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  • 1
    Electronic Resource
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    Springer
    Calcified tissue international 23 (1977), S. 13-17 
    ISSN: 1432-0827
    Keywords: Dental calculus ; Glycopeptide ; Chemistry
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Summary A method is described for the isolation and purification of a sulphated glycopeptide from human supragingival calculus. The compound was isolated after using EDTA treatment, 2 M CaCl2 extraction, proteolytic digestion, ethanol precipitation, and finally purified by DEAE cellulose chromatography. It migrated as a single component on cellulose acetate electrophoresis, and chemical and infrared spectral analysis showed the presence of covalently attached sulphate groups. The sulphated glycopeptide was distinguished from being a sulphated glycosaminoglycan.
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  • 2
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    Journal of molecular evolution 9 (1977), S. 369-371 
    ISSN: 1432-1432
    Keywords: Methanogenic bacteria ; Primitive atmosphere ; Evolution ; Ecology ; Methane-carbon dioxide cycle
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The phenotype and antiquity of methanogenic bacteria suggest them to have been one of the major factors determining a dynamic balance between CO2 and CH4 in the primitive atmosphere.
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  • 3
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    Journal of molecular evolution 15 (1980), S. 79-101 
    ISSN: 1432-1432
    Keywords: Molecules ; Interstellar ; Chemistry ; Isotopes ; Solar system
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The study of interstellar molecules broadly includes two areas of interest. One area uses the unique ability of molecules to act as probes of the physical conditions in the cold, dense, visually opaque component of the interstellar medium. The physical properties of this and other components of the interstellar medium are summarized. The other area deals with the chemistry of interstellar molecules, recent aspects of which are emphasized in this review. Gas-phase chemistry, shock chemistry, and grain surface chemistry are discussed in the context of recent observations. No present observations suggest that surface reactions are relevant, but neither can they be ruled out. Ion-molecule reactions are clearly operative, at least for the simpler species. Chemical isotope fractionation is reviewed, andd it is concluded that the complexities of the chemistry allow no cosmological conclusions to be drawn from observations of deuterium in interstellar molecules, while the presence of13C in interstellar molecules permits an estimate of the12C/13C ratio which is consistent with the current concepts of the nucleosynthesis history of the Galaxy. Possible connections between interstellar molecules and the early molecular history of the solar system are discussed.
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  • 4
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    Pure and applied geophysics 118 (1980), S. 128-151 
    ISSN: 1420-9136
    Keywords: Galactic cosmic rays ; Solar proton events ; Particle precipitation ; Chemistry
    Source: Springer Online Journal Archives 1860-2000
    Topics: Geosciences , Physics
    Notes: Abstract An assessment is made of the relative contribution of certain classes of energetic particle precipitation to the chemical composition of the middle atmosphere with emphasis placed on the production of odd nitrogen and odd hydrogen species and their subsequent role in the catalytic removal of ozone. Galactic cosmic radiation is an important source of odd nitrogen in the lower stratosphere but since the peak energy deposition occurs below the region where catalytic removal of O3 is most effective, it is questionable whether this mechanism is important in the overall terrestrial ozone budget. The precipitation of energetic solar protons can periodically produce dramatic enhancement in upper stratospheric NO. The long residence time of NO in this region of the atmosphere, where catalytic interaction with O3 is also most effective, mandates that this mechanism be included in future modelling of the global distribution of O3. Throughout the mesosphere the precipitation of energetic electrons from the outer radiation belt (60°≲Λ≲70°) can sporadically act as a major local source of odd hydrogen and odd nitrogen leading to observable O3 depletion. Future satellite studies should be directed at simultaneously measuring the precipitation flux and the concomitant atmosphere modification, and these results should be employed to develop more sophisticated models of this important coupling.
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  • 5
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    Calcified tissue international 23 (1977), S. 39-44 
    ISSN: 1432-0827
    Keywords: Dental cementum ; Collagen ; Protein ; Chemistry
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Summary Cyanogen bromide (CNBr) peptides were prepared of the insoluble collagen of bovine dental cementum. Following chromatographic separation, the peptides were identified by their amino-acid composition. Type I collagen ([α1(I)]2α2) accounted for more than 90% of the organic matrix, while Type III collagen ([α1(III)]3) was present at a level of approximately 5%. Amino-acid analyses revealed that the CNBr peptides from α1(I) and α2 chains of cementum closely resembled the corresponding peptides from calf skin. The only systematic difference was a higher level of hydroxylation of prolyl and lysyl residues of the cementum peptides.
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  • 6
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    Calcified tissue international 23 (1977), S. 87-94 
    ISSN: 1432-0827
    Keywords: Calcium ; Osteoporosis ; Lactation ; Chemistry
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Summary The calcium homeostatic mechanism was challenged in adult female rats by feeding them a calcium-deficient diet containing oxalate, and by subjecting them to pregnancy and lactation. The regimen caused a substantial weight loss, especially in those animals which reared their young well. Severe hypocalcaemia was observed in the lactating rats. Serum-P was slightly elevated. The content of hydroxyproline in serum was considerably elevated, reflecting the degree of calcium deprivation. Serum proteins were least influenced. The calcium depriving regimen reduced the growth of long bones, but did not stop it. The ash content of the bones was considerably reduced, the degree of reduction depended on the degree of calcium deprivation. Ash as percentage of total bone organ was reduced, but not to the same extent as total ash. Analyses of different parts of femur showed that the proximal and distal parts had lost more bone mineral than the diaphyseal shaft. The ash content of cortical bone tissue from the femur was estimated by a volumetric method. No differences were observed between test groups and controls, indicating that no measurable amounts of bone mineral had been removed from the walls of the vascular canals or by osteocytic osteolysis. Planimetric determinations on cross sections from femora disclosed that a great amount of bone had been removed from the endosteal surface of the diaphysis, while the periosteal surface demonstrated reduced bone apposition.
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  • 7
    ISSN: 1432-0827
    Keywords: Bacterial amphophile ; Purification ; Chemistry ; Resorption ; Ca influx ; Cyclic AMP
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine , Physics
    Notes: Summary The bone resorptive factor and amphipathic antigen (AcA) previously identified by us in preparations fromActinomyces viscosus have been partially purified, characterized chemically, and compared. They elute at the same location on chromatography with Ac 22. The fatty acid composition of AcA and the bone resorptive factor is the same. Some differences in carbohydrate composition are observed. TheActinomyces factor does not affect calcium influx or cyclic AMP in isolated bone cells. Therefore it is concluded that AcA stimulates resorption either by gaining entrance into bone cells or by way of a yet undetermined second messenger.
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  • 8
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    Environmental management 4 (1980), S. 111-124 
    ISSN: 1432-1009
    Keywords: Carolinian ; Ecology ; Ideology ; Policy ; Rondeau ; Technology ; Wildland Management ; Parks
    Source: Springer Online Journal Archives 1860-2000
    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Notes: Abstract This is a critical examination of some of the basic concepts that have guided management of parks and related reserves, often termed wildlands. Study is focussed on Rondeau Provincial Park, Ontario, and on concepts such as wilderness, primeval forest, and the Carolinian forest. Deer culling and other management policies and practices have been based upon the idea that the highly valued sassafras, tulip, and other species of the Carolinian forest are decreasing due to browsing. Field mapping and analysis of historic vegetation records indicate that this trend is not in fact occurring. Historic research also reveals difficulties in defining the Carolinian or other perceived types of forest for management purposes. A major reassessment of ideology and management policy and practice seem to be required in Rondeau and other wildlands. Vague or general concepts such as wilderness or preservation should be strongly complemented and supported by more precise statements of objectives, a learning attitude, and experimentation and research. As a result of the technical uncertainties and value judgments frequently involved, management should also be based upon the expressed preferences and continuing involvement of citizens.
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  • 9
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    Environmental management 5 (1981), S. 495-505 
    ISSN: 1432-1009
    Keywords: Suitability analysis ; Land-use assessment ; Ecology ; Planning ; Human ecology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Notes: Abstract Beginning with the passage of the National Environmental Policy Act in 1969, the federal government of the United States has enacted numerous pieces of legislation intended to protect or conserve the environment. Other national governments have also enacted environmental legislation during the past two decades. State and local governments have also adopted policies concerned with environmental planning and management. Multiple laws and overlapping governmental agency responsibilities have confused development and resource management efforts. A comprehensive methodology that integrates the legal mandates and the agency missions into a common and unified framework is needed. Ecological planning offers such a method. Application of the method allows planners and resource managers to better understand the nature and character of the land and/or resource and therefore make better decisions about its appropriate use or management. The steps taken in an ecological planning process—1) goal setting, 2) inventory and analysis of data, 3) suitability analysis, 4) developing alternatives, 5) implementation, 6) administration, and 7) evaluation—are outlined and explained. Hand-drawn overlays and computer programs as techniques for handling ecological planning information are compared. Observations and suggestions for further research are offered.
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  • 10
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    Archives of microbiology 112 (1977), S. 153-156 
    ISSN: 1432-072X
    Keywords: Marine luminous bacteria ; Symbiosis ; Vibrio fischeri ; Cleidopus gloriamaris ; Taxonomy ; Ecology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Luminous bacteria isolated from the light organs of the Australian Pinecone fish Cleidopus gloriamaris have been studied. The isolates were from fish from four different geographical estuarine systems on the east coast of Australia. All isolates were found to be strains of Vibrio fischeri, a species not hitherto demonstrated conclusively as forming a symbiotic association. Some ecological considerations are discussed.
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  • 11
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    Archives of microbiology 131 (1982), S. 107-111 
    ISSN: 1432-072X
    Keywords: Cyanophyta ; Cyanobacteria ; Oscillatoria rubescens ; Photosynthetic pathways ; Photosynthetic enzymes ; Ecology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Short term14C labelling experiments and enzymatic activities related to primary pathways of photosynthesis have been studied in the cyanophytaOscillatoria rubescens D.C. from axenic cyclostat cultures. Responses of samples from cultures with different amounts of nitrogen are presented and compared. Variations in photosynthetic pigments are used to quantify the degree of nitrogen starvation at different levels. PEPcarboxylase activity remains low and is not affected by nitrogen starvation. RuBPcarboxylase activity is lowered to nearly two thirds of its normal metabolic rate by starvation but PEPcarboxykinase and aspartate aminotransferase activities are significantly higher in this case. Malate dehydrogenase is slightly altered and malic enzyme is never active. Starved algae replaced in fresh complete media fix rapidly14C in nitrogen compounds such as amino acids. Results are discussed in regard to both physiological and ecological characteristics ofO. rubescens. PEPcarboxykinase can play a role in making efficient use of HCO 3 - .
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  • 12
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    Archives of microbiology 104 (1975), S. 207-214 
    ISSN: 1432-072X
    Keywords: Halophilic bacteria ; Halobacterium volcanii ; Halophilism ; Dead Sea ; Ecology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A halophilic bacterium was isolated from bottom sediment from the Dead Sea. The organism possessed the properties of the halobacteria, but differed from the known species in two important respects, 1) the cells were disc-shaped and often cupped when grown under optimum conditions, 2) the optimum requirements for sodium chloride was in the range 1.7–2.5 molar which is about half of that generally reported for the halobacteria. The organism was assigned to the genus Halobacterium and described as Halobacterium volcanii spec.nov. The optimum sodium chloride concentration for growth was close to that found in the Dead Sea. The tolerance for magnesium chloride was very high; the organism grew well in media containing magnesium chloride in the concentrations found in the Dead Sea. Halobacterium volcanii is therefore remarkably well fitted for life in the Dead Sea.
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  • 13
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    Archives of microbiology 139 (1984), S. 351-354 
    ISSN: 1432-072X
    Keywords: Aerobic denitrification ; Thiosphaera pantotropha ; Nitrate reduction ; Bacterial selection ; Ecology ; Oxygen
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract During studies on the denitrifying mixotroph, Thiosphaera pantotropha, it has been found that this organism is capable of simultaneously utilizing nitrate and oxygen as terminal electron acceptors in respiration. This phenomenon, termed aerobic denitrification, has been found in cultures maintained at dissolved oxygen concentrations up to 90% of air saturation. The evidence for aerobic denitrification was obtained from a number of independant experiments. Denitrifying enzymes were present even in organisms growing aerobically without nitrate. Aerobic yields on acetate were higher (8.1 g protein/mol) without than with (6.0 g protein/mol) nitrate, while the anaerobic yield with nitrate was even lower (4 g protein/mol). The maximum specific growth rate of Tsa. pantotropha was higher (0.34 h-1) in the presence of both oxygen (〉80% air saturation) and nitrate than in similar cultures not supplied with nitrate (0.27 h-1), indicating that the rate of electron transport to oxygen was limiting. This was confirmed by oxygen uptake experiments which showed that although the rate of respiration on acetate was not affected by nitrate, the total oxygen uptake was reduced in its presence. The original oxygen uptake could be restored by the addition of denitrification inhibitors.
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  • 14
    ISSN: 1432-072X
    Keywords: Bacillus tusciae ; New species ; Taxonomy ; Ecology ; Chemolithoautotrophy ; Hydrogen oxidation ; Hydrogenase ; Thermophily ; Geothermal manifestation ; Solfatara
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A thermophilic, chemolithoautotrophic, hydrogen-oxidizing sporeformer has been isolated from ponds in a solfatara in the geothermal area of Tuscany (Italy). Some physicochemical parameters of the habitat were determined. The habitat was characterized by the presence of molecular hydrogen in the escaping gases, a very low content of phosphate and organic matter. Temperature and water level in the ponds varied widely. The organism formed oval, subterminal spores, which swelled distinctly the sporangium. Optimal growth occured between pH 4.2 and 4.8 at 55°C. It grew best under autotrophic conditions, but organic substrates including short chain fatty acids, amino acids and alcohols could also support heterotrophic growth. Sugars were not metabolized. The hydrogenase was soluble but did not reduce pyridine nucleotides. Based on its morphological and biochemical features, the organism belongs to the genus Bacillus, but differs from all the previously described species. It is therefore proposed as constituting a new species, Bacillus tusciae.
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  • 15
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    Journal of mathematical biology 12 (1981), S. 343-354 
    ISSN: 1432-1416
    Keywords: Ecology ; Periodic differential equations ; Optimization
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Mathematics
    Notes: Summary The theory developed here applies to populations whose size x obeys a differential equation, $$\dot x = r(t)xF(x,t)$$ in which r and F are both periodic in t with period p. It is assumed that the function r, which measures a population's intrinsic rate of growth or intrinsic rate of adjustment to environmental change, is measurable and bounded with a positive lower bound. It is further assumed that the function F, which is determined by the density-dependent environmental influences on growth, is such that there is a closed interval J, with a positive lower bound, in which there lies, for each t, a number K(t) for which $$F(K(t),t) = 0$$ and, as functions on J × ℝ, F is continuous, while ∂F/∂x is continuous, negative, and bounded. Because x(t) = 0, 〉 0, or 〈 0 in accord with whether K(t) = x(t), K(t) 〉 x(t), or K(t) 〈 x(t), the number K(t) is called the “carrying capacity of the environment at time t”. The assumptions about F imply that the number K(t) is unique for each t, depends continuously and periodically on t with period P, and hence attains its extrema, K min and K max. It is, moreover, easily shown that the differential equation for x has precisely one solution x * which has its values in J and is bounded for all t in ℝ; this solution is of period p, is asymptotically stable with all of J in its domain of attraction, and is such that its minimum and maximum values, x min * and x max * , obey $$K_{min} \leqslant x_{min}^* \leqslant x_{max}^* \leqslant K_{max}^* .$$ The following question is discussed: If the function F is given, and the function r can be chosen, which choices of r come close to maximizing, x min * ? The results obtained yield a procedure for constructing, for each F and each ɛ 〉 0, a function r such that x min * 〉 K max − ɛ.
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  • 16
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    Journal of mathematical biology 18 (1983), S. 255-280 
    ISSN: 1432-1416
    Keywords: Population dyamics ; Ecology ; Periodic solutions
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Mathematics
    Notes: Abstract A model of the competition of n species for a single essential periodically fluctuating nutrient is considered. Instead of the familiar Michaelis-Menten kinetics for nutrient uptake, we assume only that the uptake rate functions are positive, increasing and bounded above. Sufficient conditions for extinction are given. The existence of a nutrient threshold under which the Principle of Competitive Exclusion holds, is proven. For two species systems the following very general result is proven: All solutions of a τ-periodic, dissipative, competitive system are either τ-periodic or approach a τ-periodic solution. A complete description of the geometry of the Poincaré operator of the two species system is given.
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  • 17
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    Journal of mathematical biology 7 (1979), S. 281-301 
    ISSN: 1432-1416
    Keywords: Ecology ; Population dynamics ; Semelparous species
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Mathematics
    Notes: Summary The theory discussed in the first two papers, I and II, of this series is here generalized so that it is applicable to a population which obeys, at each instant t, the following two assumptions: (i) the rate- Dx(a, t) at which the population loses individuals of age a through death and dispersal is given by a function γt of a and the number x(a, t) of individuals which have age a, i.e.-Dx(a, t)=γt(x(a, t), a) and (ii) the number x(0, t) of newly born individuals is given by a function Ft of the number x(af, t) of individuals at a specified age af of fecundity, i.e. x(0, t)=Ft(x(af, t)). The ‘autonomous case’ in which the functions γt and Ft are independent of the subscript t corresponds to the theory developed in I and II. The present article contains a treatment of the case in which the population is in a ‘periodic environment’ in the sense that the mapping t ↦ (γt, Ft) is periodic with a period which is an integral multiple N of af. Under the assumption that for each pair (t, a) the function γt(·, a) is convex and the function Ft(·) is strictly increasing and concave, it is shown that when the environment is periodic, a given population can be expected to belong to one of three classes, regardless of initial conditions: (A) the class of ‘endangered populations’ for which the abundance function x eventually decays to zero, (B) the class of ‘asymptotically periodic populations’ for which as time increases x approaches a non-zero function x* which is periodic in time with period Naf, and (C) the class of populations which exhibit unbounded growth. The properties of the loss functions γt and fecundity functions Ft which determine the class to which a population belongs are found and discussed, and formulae are given for the stable periodic abundance function x* of a population in class B. In a discussion of the domain of application of the theory, it is pointed out that when reproduction is seasonal and is followed by mortality, the assumption that an individual interacts only with others of the same age is a reasonable one.
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  • 18
    ISSN: 1432-0878
    Keywords: Milk ; Fat globule membrane ; Carbohydrates ; Chemistry ; Ruthenium red ; Ultrastructure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Summary The fat globules of the cream fractions of human and rat milk were stained with ruthenium red. Under the electron microscope, discrete granules and an amorphous coat of lesser density are seen at the surface of the milk fat globules. Since ruthenium red binds anionic groups selectively, it is probable that the granules containe the greatest concentration of these groups. The cream fraction of rat milk contains hexoses, hexosamines, methylpentoses and sialic acid. Methylpentoses and hexosamines are significantly enriched in the cream fraction. It is concluded that the finding of a surface coat in milk fat globules is in keeping with the Bargmann-Knoop model and suggests a distinct mechanism for carrying certain complex carbohydrates in milk. The role of the negative charges at the outer surface of the membrane coat in maintaining fat globules in suspension and in binding certain cations such as calcium is suggested.
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  • 19
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    Plant ecology 30 (1975), S. 153-155 
    ISSN: 1573-5052
    Keywords: Ecology ; History of phytosociology ; India ; Phytosociology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
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  • 20
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    Plant ecology 44 (1981), S. 13-24 
    ISSN: 1573-5052
    Keywords: Aceri-Fagetum ; Alpine timberline ; Dynamics of stands ; Ecology ; Fagus silvatica ; Morphogenesis ; Polycormons ; Vegetative regeneration
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary In the Central Europaean mountain ranges, the alpine timberline is usually formed by Picea abies or by other conifers (Larix decidua, Pinus mugo, Pinus cembra). Unlike in the East Europaean mountains, the Balkan Peninsula, the Europaean Mediterranean and Les Vosges, Fagus silvatica occurs sporadically on the alpine timberline in this area where it forms very specific woods. This type of the alpine timberline is bound to the association Aceri-Fagetum (Bartsch 1940, Moor 1952). This association is found on the highest sites of the Fagion alliance in the subalpine vegetation zone. Within this zone, the association is bound to localities with heavy snowfall and a submaritime climat. It occupies larger areas in the Swiss Jura and in Les Vosges. In other Central Europaean mountains (the Alps, Schwarzwald, Krkonoše etc.) it occus in isolated areas only. Many trunk deformations and bush forms are found with Fagus on a large scale in the snow impacted localities (steep slopes, periphery of corries, avalanche slopes etc.). Crawling and sliding snow causes these growth deformations in the Fagus seedlings since their first year. The general increase of the vegetative propagation is a remarkable and exceptional response of Fagus in adapting to these extreme growth conditions. Under alpine timberline conditions, the generative propagation is very limited. The vegetative shoots with adventitious root systems are formed mainly from branches layering in the humus. The typical monocormonal tree-form of Fagus from lower altitudes turns in this way into a polycormon. From an evolutionary point of view, it is a suitable substitution; but from the ecological viewpoint, however, it is a sturdy growth form. In its typical form, the polycormon is formed by a number of vegetative shoots, which may be deformed but are very elastic and resistent. The number of shoots in a polycormon varies from 3–5 below, and up to 40–50 at and above the timberline. They are formed by shoots of a number of filial successions. The decay of a polycormon results from decreasing vitality of single shoots or, very often, it is caused by the impact of snow and ice. Considering, however, the fact that single shoots have a sufficient adventitious root system and are thus physiologically independent, the dying of the other shoots does not mean a danger for the existence of the remaining part of the polycormon. The age of a polycormon as a whole is difficult to determine. Fagus polycormons can be considered as a typical growthform of the highest sites of the association Aceri-Fagetum. No other tree species is able to form close stands under these conditions. This phenomenon is of primary importance for the existence of this plant community. The unusual character of the structure and dynamics of the highest Aceri-Fagetum stands gives rise to a special type of the alpine timberline which should be understood not as a ‘line’ but as a transitional zone between the closed stands and the hon-wooded plant communities of the subalpine vegetation zone. The dynamic succession of the Fagus polycormons guarantees the stability of the Fagus stands forming the alpine timberline.
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  • 21
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    Plant ecology 48 (1982), S. 123-131 
    ISSN: 1573-5052
    Keywords: Ecology ; Fringe communities ; Numerical classification ; Ostrya carpinifolia woods ; Phytogeographic elements ; Phytosociology ; Southern Alps (N-Italy) ; Vegetation dynamics ; Wood edge communities
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Forest regeneration in the vegetation complex of the submontane belt in the Southern Alps involves the active participation ofOstrya carpinifolia woods and their wood edge communities. The corresponding syndynamical processes are described by employing phytosociological, phytogeographical and ecological methods. It is concluded that: (i) The communities of the grassland-wood transition are of major importance in the successional developments in this man-made vegetation complex. (ii) Many species occurring in the region of the deciduous forests of Eurasia find their refuge in such transitional communities and are supposed to play an important part in the succession. (iii) Ostrya carpinifolia is considered as an early successional tree species.
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  • 22
    ISSN: 1573-5052
    Keywords: Alyssum serpyllifolium subspecies ; Nickel accumulation ; Nickel tolerance ; Ecology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Experiments were carried out on the tolerance to, and uptake of, nickel by three iberian subspecies of Alyssum serpylliforium Desf. Two of these subspecies, the serpentine-endemic ssp. lusitanicum from Bragança, Portugal and ssp. malacitanum from Málaga, Spain, are hyperaccumulators (〉 1000 μg/g in dried material) of nickel. Their possible ancestor, ssp. serpyllifolium (from Granada, Spain) was a non-accumulator of this element. Seeds of the two serpentine-endemics germinated extensively in nickel concentrations up to 12 000 μg/g (1.2%) whereas ssp. serpyllifolium only germinated in nickel concentrations below 60 μg/ml. Tolerance tests involving measurement of new root lengths of excised seedlings placed in varying nickel concentrations, again showed much greater tolerance of the two serpentinophytes. In both series of experiments, the order of tolerance was: ssp. lusitanicum 〉 ssp. malacitanum 〉 ssp. serpyllifolium. In pot trials involving seedlings of ssp. malacitanum grown in mixtures containing varying amounts of calcium, magnesium, and nickel, the most important finding was that plants will tolerate higher nickel contents in the soil when excess calcium is added. This is achieved by lowering the uptake of nickel. There appeared to be some concomitant reduction in calcium uptake in the presence of nickel, and some increase in uptake of magnesium. The resultant lower calcium/magnesium ratio in the plant, though not symptomatic of a favourable condition for colonization of serpentine soils, probably results from a mechanism which renders nickel innocuous to the plant at the expense of calcium uptake. It is suggested that the physiological characters of ssp. lusitanicum and ssp malacitanum are sufficiently different to support arguments for promoting the latter to full specific rank as has now been done for ssp. lusitanicum.
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  • 23
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    Plant ecology 55 (1984), S. 57-64 
    ISSN: 1573-5052
    Keywords: Ecology ; Hepaticae ; Pioneer vegetation ; Resurrection (poikilohydric) plants ; Riccia ; South West Africa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Three associations of the Nanocyperion teneriffae Lebrun 1947 (Sporoboletalia festivi Lebrun 1947) are described. They are physiognomically and ecologically similar to associations of the Mediterranean Isoeto-Nanojuncetea Br.-Bl. et Tx. 1943 and Helianthemetalia guttati Br.-Bl. 1940. They are rich in very specialized therophytes and resurrection plants.
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  • 24
    ISSN: 1573-5036
    Keywords: Actinorhizas ; Ecology ; Gamma irradiation ; Hippophaë rhamnoides ; Longidorus ; Nematode ; Nodulation ; Root nodules ; Soil sterilization ; Succession
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary To explain the decline of Hippophaë scrub in the vegetation succession in the dunes of The Netherlands, the growth and nodulation of Hippophaë plants grown in pots, using soil from an early stage (site AH) and a post-optimum stage (site HP), were investigated. In HP-soil nodulation, yield, and the nitrogen and phosphorus content of test plants were always lower and the number of necrotic nodules and the dry matter content were always higher than in AH-soil, even after inoculation with crushed nodules and the addition of a nutrient solution. Plants in HP-soil also had darker roots, less root hairs, a higher number of short lateral roots and a higher percentage of dead roots than those in AH-soil. These characteristics of adverse growth conditions disappeared upon ignition or gamma-irradiation of HP-soil. Possible explanations of these results are discussed. The degeneration of Hippophaë scrub cannot be ascribed to the age of the plants, the absence of sufficient infective endophyte particles or to abiotic factors such as unfavourable physical (particle size) or chemical soil conditions but is caused by biotic factors. No indications were obtained that plant-pathogenic fungi and bacteria are involved. HP-soil in contrast to AH-soil, however, contained large numbers of the nematodeLongidorus sp., a species known to cause root deformations. The conclusion was that this nematode is one of the biotic factors involved in the degeneration of the Hippophaë scrub. This degeneration is due to a restriction of the root system resulting in a low phosphate uptake, a low nodulation capacity and, as a consequence, a low nitrogen content. The results demonstrate that biotic soil factors are important in influencing succession in higher plant communities.
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    Plant and soil 69 (1982), S. 293-297 
    ISSN: 1573-5036
    Keywords: Ecology ; Frankia ; Nitrogen fixation ; Water potential
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Growth responses of Frankia isolates to decreasing water potential were monitored in systems where potentials were controlled by KCl, NaCl and Polyethylene glycol. The highest potential tested was −2 bar (basal medium). The general pattern emerging was that isolates fromAlnus glutinosa, A. viridis andComptonia peregrina showed declining growth at potentials below −2 to −5 bar. AMyrica gale isolate showed declining growth with decreasing potential. All isolates were more sensitive to decreases in potential in a matric controlled than an osmotic controlled system. They all showed approximately 50 percent growth reduction at −5 to −8 bar, and meagre growth at −16 bar after 35 days. The Comptonia isolate was the most vigorous at low potentials. Nitrogen fixation ability was monitored for two isolates. Highest specific activities were observed between −3 and −5 bar for the Myrica isolate and between −5 and −7.5 bar for theA. glutinosa isolate.
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  • 26
    ISSN: 1573-5036
    Keywords: Actinorhizas ; (Actinomycetes) ; Ecology ; Hippophaë ; (Mystiflora: Elaeagnaceae) ; Longidorus ; (Nematoda: Longidoridae) ; Nodulation ; Soil ; sterization ; Vegetational succession ; Tylenchorhynchus (Nematoda: Tylenchrohynchidae)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Hippophaë rhamnoides seedlings were grown in sterilized and unsterilized soil from a decliningH. rhamnoides scrub, to which different numbers ofLongidorus sp. andTylenchorhynchus microphasmis were added. In sterilized and unsterilized soil, retardation of growth, content of dry matter in the shoots, and incidence of deformed short lateral roots of test plants were positively correlated with counts of both nematode species. Nitrogen content in the shoots, nodulation on the roots of test plants and increase increase in nematodes were negatively correlated with the initial number of both nematode species in sterilized soil. In unsterilized soil, an unknown biotic factor was present that reduces growth ofH. rhamnoides, nodulation and multiplication of the nematodes. This factor seems to interact with the nematodes in reducing growth ofH. rhamnoides.
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  • 27
    ISSN: 1573-5036
    Keywords: Catalase ; Ecology ; Fertilizers ; H2O2∶H2O2 oxidoreductase ; Rhizosphere effects ; Soil enzymes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Catalase activity of a loamy sand under a 3-year crop rotation in the southeastern U.S.A. was monitored. Corn (Zea mays L.), cotton (Gossypium hirsutum L.), and soybean [Glycine max (L.) Merr.] were the summer crops in the rotation. Winter wheat (Triticum aestivum L.) was planted after corn, and soybean was followed by a winter fallow period. Cotton was followed by a mixture of common vetch (Vicia sativa L.) and crimson clover (Trifolium incarnatum Gibelli & Belli) which was eventually plow-incorporated as a green manure. Highest mean catalase activities were recorded in soil under the wheat, soybean, and winter legume crops; lowest activities were found in soil bearing corn and cotton, and during the winter fallow period. The fertilization regime influenced soil catalase activity independently of the crop. Soil deficient in any of the major elements showed low enzyme activity. Highest activity was found in soil fertilized with P and K, and with N supplied by a winter legume crop. Addition of supplementary mineral nitrogen to this regime reduced catalase activity. Elimination of the winter legume crop from an otherwise complete fertilization regime resulted in a drastic reduction in enzyme activity. In soil receiving a complete fertilization regime there was a close correlation between soil catalase and xylanase activities. A similar correlation between these two enzymes was not found in soil receiving incomplete fertilization.
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  • 28
    ISSN: 1573-5036
    Keywords: Chitin ; Chitinase ; Chitinglycanohydrolase ; E. C. 3.2.1.14 ; Ecology ; Fertilizers ; Rhizosphere effects ; Soil enzymes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Chitinase activity was determined by incubating a mixture of toluene-treated soil with 1% (w/w) colloidal chitin suspension for 18 h at 37°C and then, after dilution, assaying the amount of N-acetyl-glucosamine released. Maximal chitinase activity was observed at 45°C and optimal pH for enzymatic reaction was 5.0–5.5. Soil chitinase activity decreased with increasing soil depth and was significantly affected by crop cover and fertilization regime. Chitin added to soil stimulated chitinase activity. Enzyme activity was correlated with the soil fungal population but not with numbers of actinomycetes or bacteria. A specialized mycoflora was associated with chitin decomposition.
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  • 29
    ISSN: 1573-5117
    Keywords: Ecology ; Porifera ; Spongillidae ; Taxonomy
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    Topics: Biology
    Notes: Abstract The taxonomic validity, present distribution, and specific threats to the existence of the freshwater sponge,Spongilla sponginosa Penney were investigated. This species, reported only from the type locality, Week's Pond, Sumter County, South Carolina, has apparently been extirpated due to highly acidic pH levels in the pond water. Examination of holotype materials indicate some question of the validity of S. sponginosa as a distinct species.
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  • 30
    ISSN: 1573-5117
    Keywords: Ecology ; Porifera ; Spongillidae ; Taxonomy
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    Notes: Abstract The taxonomic validity, present distribution, and specific threats to the existence of the freshwater sponge, Corvomeyenia carolinensis Harrison 1971 were investigated. This species, a valid environmentally restricted species, has not colonized other areas beyond the type locality, Adams Pond, Richland County, South Carolina. At present, the only threat to the existence of this species is the aggressive competition for substrate provided by Heteromeyenia baileyi, a sponge species recently colonizing the habitat. Habitat data, particularly physicochemical data, from Adams Pond and other components of the Mill Creek drainage system greatly extend the known environmental parameters of Corvomeyenia carolinensis, Heteromeyenia baileyi, Anheteromeyenia ryderi, Spongilla lacustris, and Trochospongilla pennsylvanica.
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    ISSN: 1573-5117
    Keywords: Ecology ; Porifera ; Spongillidae ; Taxonomy
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    Notes: Abstract The taxonomic status, present distribution and specific threats to the existence of the environmentally restricted freshwater sponge, Spongilla heterosclerifera Smith 1918 were investigated. This species, collected only from Oneida Lake, New York, has not colonized other habitats and continues to exhibit typical diagnostic characteristics, thus qualifying as a valid environmentally restricted species. Although the sponge presently colonizes two sites in the lake, both near the northwestern shore, the total absence of sponge fauna from other lake regions near more heavily populated areas of this species. Physicochemical data from Oneida Lake greatly extend the known environmental parameters of Spongilla heterosclerifera.
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    Hydrobiologia 62 (1979), S. 137-164 
    ISSN: 1573-5117
    Keywords: Planarians ; Triclads ; Ecology ; Australia
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    Topics: Biology
    Notes: Abstract The ten species of freshwater planarians known from Victoria, including one new species, are briefly reviewed. Detailed field and laboratory studies of six of these have been made and a close correlation between seasonal variation in numbers and viability at different laboratory temperatures is demonstrated. Thus Spathula camara and Reynoldsonia reynoldsoni inhabit temporary habitats that experience wide temperature fluctuations and these two species survive equally well in the laboratory at a wide range of temperatures. In contrast Spathula tryssa appears stenothermal in habitat and in the laboratory cannot tolerate even a small temperature increase. Cura pinguis and Dugesia (Girardia) sp. also show wide temperature tolerance both in terms of abundance in the field and viability studies in the laboratory. Spathula agelaea sp. nov. is unusual in that it shows two annual peaks in abundance and also exhibits aggregatory and cannibalistic behaviour that may be involved in population regulation. Aspects of the distribution, abundance, and life cycle, of all the species are discussed in relation to what is known generally of planarian ecology.
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    Hydrobiologia 65 (1979), S. 23-32 
    ISSN: 1573-5117
    Keywords: Rotifers ; Ecology ; Population peaks ; Interspecific competition ; Influence of Physico-chemical factors
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    Topics: Biology
    Notes: Abstract 17 species of rotifers have been recorded from Lake Surinsar, Jammu (J & K), India of which some are either exclusively limnetic (Brachionus angularis, Hexarthra sp., Filinia opliensis), or littoral (Brachionus patulus, M. ventralis, Trichotoria sp., Platyias quadricornis, Lecane (Monostyla) decipiens, L (M), bulla and Lecane sp.) and others (Keratella tropica, Anuraeopsis fissa, Brachionus quadridentatus, B. calyciflorus, Trichocera sp., T. similis, and Polyarthra sp.) seem to be wandering species. Seasonal maxima for both littoral and limnetic zones are reported. Most population maxima are contributed mainly by one or at best two species. Physico-chemical factors like temperature, pH, dissolved oxygen, free carbon dioxide, calcium, magnesium, and total alkalinity have been studied and their infuence on these rotifer species are discussed. On their thermal responses, the available rotifer species have been classified as warm stenothermal, cold stenothermal or eurythermal. The importance of Mytilina ventralis as a biological indicator for dissolved oxygen in this lake has been pointed out.
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  • 34
    ISSN: 1573-5117
    Keywords: Ecology ; Porifera ; Spongillidae ; Taxonomy
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    Topics: Biology
    Notes: Abstract The taxonomic status of Ephydatia subtilis (Weltner) remains undetermined. Despite extensive collecting in the type locality, Lake Kissimmee, Florida, the species was not found. Stratospongilla penneyi sp. nov. is described utilizing spicular diagnosis, cytochemistry, and scanning electron microscopy. Physicochemical data from the type locality are presented and specific threats to the existence of the species are determined.
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    Hydrobiologia 76 (1981), S. 87-96 
    ISSN: 1573-5117
    Keywords: Ecology ; production ; Gulf of Bothnia ; pelagial ; benthos
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    Topics: Biology
    Notes: Abstract Production biology in the Bothnian Bay is discussed and compared to that of the southern parts of the Baltic. Severe ice-conditions, low water temperatures in spring and early summer and a pronounced water-colouring cause a delay of the spring development of phytoplankton and a low annual production in the Bothnian Bay. This delay makes possible a higher efficiency of the pelagic system as the zooplankton fauna can develop in harmony with the food resources. The downward transport of energy and matter to the bottom communities from an efficient pelagial should be small and temporally unpredictable, which is thought to be an adequate explanation of the observed very low benthic fauna biomasses in the Bothnian Bay.
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  • 36
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    Hydrobiologia 73 (1980), S. 181-193 
    ISSN: 1573-5117
    Keywords: Ecology ; feeding ; invertebrate behavior ; larval biology ; Rotifer ; sessile rotifer ; substrate-dependent survivorship ; substrate selection
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  • 37
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    Environmental biology of fishes 2 (1977), S. 137-145 
    ISSN: 1573-5133
    Keywords: Cichlid ; Behavior ; Ecology ; Predation ; Prolonged parental care ; Multiple parental care ; Etroplus maculatus ; Etroplus suratensis ; Tropics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis The Asian cichlid fishes, Etroplus maculatus (Bloch) and E. suratensis (Bloch) were observed in their natural habitat. Ecological and behavioral interactions of these species have not been previously reported. E. suratensis benefits from being cleaned by E. maculatus; it is doubtful the ingestion of parasites and fungi is of much direct benefit to E. maculatus. The advantage to E. maculatus is more likely the survival and reproductive success of adult E. suratensis which in turn provide eggs and eleutheroembryos for the egg-young predatory habit of E. maculatus. Predation is lessened by age-specific crypticity of E. suratensis. E. maculatus displays a unique behavior during its parental cycle where both parents actively defend their young until they are nearly sexually mature and almost the size of the parents. Adult E. suratensis engage in altruistic multiple parental care where several adults care for a single brood that presumably were spawned by only two of the adults. Such behavior has not been reported previously for fish.
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  • 38
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    Environmental biology of fishes 4 (1979), S. 389-400 
    ISSN: 1573-5133
    Keywords: Ecology ; Endocrinology ; Epidermis ; Evolution ; Feeding ; Motivation ; Ontogeny ; Parental behavior ; Physiology ; Prolactin
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Parent-touching behavior by young fishes occurs in a number of species. Most reports have been from the family Cichlidae, but this may reflect the major concentration of studies on these species. The behavior appears to serve a trophic function in many species, but may also serve to maintain cohesion of family groups, to keep adults in a parental state, or to communicate the motivational state of the young (e.g. fear, hunger). It has been suggested that prolactin may regulate the behavior and epidermal mucus condition in parental fish involved in such behavior, but the evidence is not conclusive. There appear to be similarities between cases of parent-touching as a trophic behavior, and mucus- and/or scale-feeding by cleaning symbionts or predators. Studies of this behavior hold promise for investigating interrelationships between endocrinology and behavior, and ecology and behavior.
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  • 39
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    Environmental biology of fishes 5 (1980), S. 27-32 
    ISSN: 1573-5133
    Keywords: Salvelinus fontinalis ; Salmo salar (ouananiche) ; Ecology ; Salmonids ; Atlantic salmon
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis The age structures of brook charr (Salvelinus fontinalis) and ouananiche (Salmo salar) stocks inhabiting a large rapid the river Méo, tributary to the Caniapiscau River were used to compare population stability and production of these species in north central Quebec. The brook chart stock was stable whereas ouananiche showed considerable variation in year class strength. Stock estimates were not significantly different for the two species although the brook charr estimate was 1.5 that of the ouananiche. Production estimates differed by a greater margin because of different growth patterns. Brook chair production was estimated at 19.4 kg ha−1 yr−1. Above age 2+ it was 11.4 kg ha−1 yr−1 which compares with 4.8 kg ha−1 yr−1 for the same age groups of ouananiche.
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    Environmental biology of fishes 5 (1980), S. 117-133 
    ISSN: 1573-5133
    Keywords: Cycles ; Communities ; Diversity ; Ecology ; Estuary ; Multiple regressions ; Oceanography ; Salinity ; Seasons ; Time-series analysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis From November 1975 to April 1977 nocturnal dermersal fish were sampled fortnightly at ten sites in Serpentine Creek using a three meter beam trawl with a 3.2 cm mesh net. Forty-five species from thirty-four families were obtained totalling 14 518 individuals with the six most abundant species comprising approximately 72% of the catch. Using multiple regression techniques with Fourier transformations, the mean number of species (S) and abundance (N) of all fish were found to conform to a regular annual cyclical pattern with maxima in April and May. A trend toward declining abundances of individuals and species was present. Shannon (H′) and Gleason (G) diversity indices showed no regular seasonal trends and are considered poor indicators of pollution. In comparison with other estuarine studies at different latitudes Serpentine Creek conforms to the theory that more tropical waters have the greatest faunal diversity. Seventeen of the 22 most abundant species demonstrated a regular annual cycle of abundance. The number of species, abundance and diversity measures were greatest about 1 km from the mouth of the creek and gradually declined upstream. This was the region with highest macrobenthos diversity and with the most stable abiotic values. Temperature and/or salinity were positively correlated with the abundance of eleven species. The species were placed in five groups according to their periodic characteristics. The proportion of ‘resident’ species was low and this is consistent with Tyler's (1971) theory of temperature stabilized fish assemblages. The known biology of six species is related to their occurrence. Salinity and temperature values in the creek exhibit an annual cycle which preceeds that of Bramble Bay by approximately one month. Rainfall in the watershed was correlated with observed salinity values. It is postulated that salinity is the common feature between temperate and tropical estuaries in the maintenance of community cycles.
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  • 41
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    Environmental biology of fishes 6 (1981), S. 95-103 
    ISSN: 1573-5133
    Keywords: Behavior ; Ecology ; Parental care ; Reproductive cycles ; Colonial nesting ; Etroplus maculatus ; Etroplus suratensis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis The Asian cichlids,Etroplus maculatus (the orange chromide) and E. suratensis (the green chromide) in Sri Lanka reproduce twice during the year when water conditions are favorable for nest construction and maintaining visual contact with offspring. These are the drier premonsoonal and monsoonal seasons when water turbidity decreased and salinity increased. When breeding in isolation orange chromide pairs selected dense vegetation where nests were camouflaged. During the peak breeding cycle (July) orange chromide pairs selected sparse vegetation for nesting as a compromise between survival of young and availability of adult food. These areas were also occupied by foraging non-breeding conspecifics which increased the threat of cannibalism of offspring. Under these pressures most orange chromides nested in colonies which helped decrease both actual and attempted cannibalism. The sympatric green chromide does not forage during nesting and nest site selection was determined mainly by factors favoring offspring survival. Biparental care is exhibited by both species. One member of an orange chromide pair stands guard over offspring while the other leaves the territory to forage — their roles are reversed every few minutes. The total parental investment is equivalent to the full investment of a single parent. Monogamy appears to be maintained by their metabolic constraints. In the green chromide both parents are vigilant over offspring and neither forages thus spending twice as much time in parental investment.
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    Environmental biology of fishes 6 (1981), S. 207-211 
    ISSN: 1573-5133
    Keywords: Fish ; Ecology ; Population density ; Exploitation ; Tagging ; Catch per effort
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Population and exploitation estimates were made from angler recaptures of Chautauqua Lake muskellunge,Esox masquinongy Mitchill. Fish were tagged during Conservation Department studies in 1941–1946, 1961–1965 and 1976–1978. Population estimates of adult fish ranged from one to seven fish per hectare and angler exploitation rates of tagged fish fluctuated from 3.8% to 14.1%. Relative catch indicators suggest a major decline in the lake's muskellunge population during the last decade. Overexploitation, habitat alteration and interspecific competition with recently introduced fish species were cited as probable causes of the decline.
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    Environmental biology of fishes 6 (1981), S. 213-218 
    ISSN: 1573-5133
    Keywords: Australia ; Communities ; Cycles ; Diversity ; Ecology ; Estuary ; Lunar periodicity ; Migration ; Sub-tropics ; Tides
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis A series of 10 sites were sampled at new and full moon phases in a vertically homogenous estuary, Serpentine Creek, Queensland, Australia. Forty-five species (14,518 individuals) were caught and analysed using standardized Shannon & Gleason diversity indices, and total number of species and individuals. The coefficients of variation for these values were greater for times than for sites. There were no significant differences between 14 pairs of new and full moon phases fort,t,t, andt, or between mean number of individuals for the 16 most abundant species. If significant variations do exist within months, then experiments should be done between spring and neap tides as this study found no differences between the spring tides associated with new and full moon phases.
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    Environmental biology of fishes 6 (1981), S. 371-375 
    ISSN: 1573-5133
    Keywords: Anguilliformes ; Anguillidae ; Leptocephalus ; Fish larvae ; Horizontal distribution ; Vertical distribution ; Spawning area ; Migration ; Ultrasonic tracking ; Hydrography ; Ecology ; North Atlantic ; Anguilla anguilla ; A. rostrata
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis This report presents preliminary results of the 1979 Sargasso Sea expedition from February to May 1979. Information is given on horizontal and vertical distribution of eel larvae and adults, adult eel tracking and pelagic trawling. Related matters such as electrophoretic studies on anguilliform larvae, feeding of eel larvae, predation on leptocephali, occurrence of other anguilliform larvae and hydrography are mentioned.
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    Environmental biology of fishes 7 (1982), S. 177-180 
    ISSN: 1573-5133
    Keywords: Temperature ; Behavior ; Ecology ; Fisheries ; Fish ; Marine juveniles
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    Topics: Biology
    Notes: Synopsis Sixteen yearling winter flounder, tested individually for 3-day periods in electronic shuttleboxes, voluntarily occupied an 8–27°C range of temperature, with a modal final thermal preferendum of 18.5°C (mean 18.7°C, median 19°C, midpoint 17.5°C, s.d. 1.9°C, S k + 0.33). The locomotor activity pattern of the yearling fish in the laboratory was markedly nocturnal, with mean hourly nocturnal activity exceeding mean hourly diurnal activity by a factor of 3.4. Maximum activity occurred at 0300 EST, minimum activity at 1400 EST. While activity generally increased with temperature, a local activity minimum occurred at 18.7°C, coinciding with the 24-hour mean final thermal preferendum. Comparison of these laboratory data with previously published field data suggest that behavioral responses to temperature and light play significant roles in determining age- and size-specific differences in seasonal depth stratification and onshore-offshore distributions in this species.
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    Environmental biology of fishes 3 (1978), S. 33-47 
    ISSN: 1573-5133
    Keywords: Arctic ; Boreal ; Coral reefs ; Diel patterns ; Ecology ; Diversity ; Lakes ; Seasonal differences ; Stability ; Tropics
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Freshwater and marine fish communities are described and compared for arctic, boreal and tropical latitudes. Details of habitat characteristics, species numbers, and diel and seasonal differences in distribution are given for each community type. The order of increasing richness of fish species in these environments is (1) arctic lakes, (2) arctic marine, (3) boreal lakes, (4) tropical lakes, (5) boreal marine and (6) tropical marine. The richness of numbers of species can be related to a series of factors, each of which may function at some threshold value. These factors include climatic perturbation, solar radiation, spatial heterogeneity, available nutrient supply, availability of cover, and geological time. Discontinuities in the availability of some factors can be partially compensated for by torpor or aestivation; this effectively removes the fish from the community for a period of time. Increased diversity may also be effected through the diurnal/nocturnal shift in activity in some fish communities. The development of an organic matrix, notably macrophyte beds or coral reefs, may contribute significantly to an increase in diversity within fish communities. This matrix operates by an increase in spatial heterogeneity and in biological interactions. The apparent lack of resilience of high diversity fish communities can be related to the characteristics of the underlying organic matrix. A change in the matrix will cause a change in the level of fish diversity that can be maintained in the system.
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    Environmental biology of fishes 5 (1980), S. 109-116 
    ISSN: 1573-5133
    Keywords: Bay ; Dispersal ; Ecology ; Egg type ; Fish larvae ; Islands ; Points ; Rocky habitats ; Species turnover
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Reef fish community composition in three segments of a peninsular rocky shoreline in the Gulf of California was estimated over four periods by visual observation. ‘Point’ and ‘bay’ segments had regular and distinct species compositions over most periods while a ‘middle’ segment was least distinct but consistently had the greatest number of species. Compositional change along the peninsula was least regular during the coldest sea temperature period (April). Mean species turnover between segments was highest between point and bay. Within segments, the point had greater compositional predictable composition (lowest species turnover). When species with regular frequency of encounter were classified into ‘point’, ‘middle’, ‘bay’, and ‘no trend’ groups it was found that comparatively more ‘point’ species had pelagic eggs and comparatively more ‘bay’ species had demersal eggs. Beta diversity of rocky-shore fishes along the physical gradient of the Punta Doble peninsula reflects a transition between exposed and protected rocky shoreline communities. The correlated physical environmental characteristics associated with exposed and protected habitats are discussed in relation to diversity regulation and dispersal strategies in reef fishes.
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    Environmental biology of fishes 6 (1981), S. 361-365 
    ISSN: 1573-5133
    Keywords: Mimicry ; Shamming death ; Africa ; Fish ; Chafing ; Predation ; Ecology ; Cyrtocara
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Haplochromis (=Cyrtocara) livingstoni, one of the predatory cichlids of the sand community of Lake Malawi, Africa, occurs at a density of 1.3 individuals per hectare. They are territorial, defending areas 15 m wide by 40 m long along the interface of sand andVallisneria weed beds. Individuals use a ‘death feigning’ hunting pattern to capture prey. From a position of lying on their sides semiburied in the sand, these fish attack small cichlids. During four hours of SCUBA observations three successful attacks from this position were seen. After an attack the small cichlids scatter and the predator moves on toward a new aggregation of fish where it again plays dead. Individuals feign death an average of seven times per thirty minutes watch. Death feigning behavior is initiated in two ways. The fish either 1) is stationary with its ventral surface on or close to the sand, and then falls onto its side, or 2) drops from the water colum into `lying on side' position. The initial behavioral actions of the latter method are similar to chafing behavior. But instead of chafing the sand and rising again off the bottom, the fish plows into the sand and remains immobile. These data further add to the evidence that cichlids are remarkably flexible in their feeding behavior.
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    Environmental biology of fishes 7 (1982), S. 121-136 
    ISSN: 1573-5133
    Keywords: Seasonality ; Predator-prey ; Predator interference ; Turnoverrate ; Diversity ; Ecology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Development of the fish community on a submerged 16 m barge and variation in fish abundance on nearby transects were surveyed twice monthly for twenty months. A steady increase in abundance was observed for certain fishes on the barge, whereas a few species exhibited distinct seasonal variation on both the barge and transects. Most of the seasonal species settled between March and May. Some seasonal species appeared to be site selective in their settlement and consequently settled juveniles were clumped in their distribution. An abundance of preferred topographical features may be why settlement was relatively high at the study site and indirectly why predators became significantly (r3 = 7.67***, N = 37) more abundant at the study area during the months of maximum prey settlement. Concurrent settlement of several species during the same few months may be important because juveniles become an abundant food source to predators during those few months only. Periodic swamping of predators by abundant juvenile prey may improve the chances for individuals of rarer prey species to be overlooked and therefore be succesfully recruited.
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    Environmental biology of fishes 9 (1983), S. 41-53 
    ISSN: 1573-5133
    Keywords: Artificial reefs ; Competition ; Intermediate disturbance ; Ecology ; Mortality ; Predation ; Recruitment ; Stability
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis In January 1977, a record breaking cold spell caused fish kills at Big Pine Key, Florida. Census data collected before and after the cold spell from a series of model reefs constructed in 1975 showed a significant drop in mean number of reef fish species and individuals. Following this disturbance, high recruitment of juveniles occurred, presumably due to reduced competition, predation, or a combination of these. Model and natural patch reef communities examined the summer following the cold spell (1977) were significantly different from those examined the summer before (1976) and the second summer following the cold spell (1978). During the summer of 1977, a significantly smaller mean fish size and a significantly greater mean number of species and individuals were observed. Increased species richness following the cold spell is consistent with the intermediate disturbance hypothesis. Contrary to some theoretical predictions, results suggest reef fish communities are highly resilient to some regional disturbance.
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    Plant and soil 52 (1979), S. 59-68 
    ISSN: 1573-5036
    Keywords: Actinomycete symbiosis ; Ecology ; Endophyte ; Field studies ; Hippophaë ; Nodulation ; Nodule distribution ; Root nodules
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The numbers, weights, and ages of root nodules were determined in a homogeneous 6- to 7-year-old stand ofHippophaë rhamnoides in a coastal sand-dune area. Large variations in the number of nodules, which ranges from 30 to 281 per m2 were found. Most of the nodules occurred between 10 and 60 cm below the soil surface. In the surface layer and lower than 60 cm only small numbers of nodules were present. It is concluded that relatively large samples have to be investigated to obtain an impression of the nodulation of a given stand and to permit a comparison of the contribution of dinitrogen fixation in different stands. Close correlation was found between nodule numbers and the age of the roots, young roots having the highest numbers. However, the wide variation in the number of nodules per square metre could not be explained solely by the age distribution of the roots. The possible role of some other factors is discussed. No relationship was found between the nodule weight and the age of the nodule. The mean dry weight of living nodule material was 5.3 g per m2. Most nodules reached an age of up to 3 years. The significance of nodule decay for the distribution of the endophyte in the soil and in the process of nodule formation is discussed.
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    Plant and soil 56 (1980), S. 123-139 
    ISSN: 1573-5036
    Keywords: Actinorhizas ; Ecology ; Endophyte distribution ; Hippophaë rhamnoides ; Infective potential ; Nodulation ; Root nodules
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary The infective potential (IP) of nodule homogenates from field-grownHippophaë rhamnoides L. ssp.rhamnoides was determined by counting the number of nodules formed on test plants after inoculation with various dilutions of the homogenates. The IP was almost constant,i.e. 105 to 106 per gram of fresh nodule material. Methods to store nodule material without loss of IP were tested. The IP of air-dried nodule powders stored at 6°C hardly decreased during a period of more than a year. Data are presented on the IP of soil samples from sites representing various stages of dune formation. BeforeH. rhamnoides appeared, the IP was low: 1 to 36 nodules were formed on test plants per kg of soil. This low IP was due to low numbers of infective endophyte particles in these soils. During the succession of theH. rhamnoides scrub, the IP of the soil increased, due to the increase in the number of endophyte particles in the soil. Gradually, however, nodulation was limited by other environmental factors. The nature of these factors is discussed.
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    Plant and soil 61 (1981), S. 71-80 
    ISSN: 1573-5036
    Keywords: Ecology ; Fluorescent antibody ; Immunofluorescence ; Rhizobium japonicum ; Rhizosphere ; Root surfaces ; Soybean
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Summary Populations of nativeRhizobium japonicum 123 in the rhizospheres of field and pot grown plants as determined by immunofluorescence were calculated on the basis of root surface area. The density ofR. japonicum 123 on the root fluctuated between a few hundred to over a thousand per square centimeter of root surface. As root volume expanded rapidly, the Rhizobium density fell to less than one hundred per unit area. There was no appreciable effect due to different plant, nitrogen amendment, or addition of another strain ofR. japonicum, on the surface density of the nativeR. japonicum population on roots. Nor did the native population influence the added strain. Direct examination of root surface segments revealed that naturalized rhizobia existed sparsely on root surfaces in the form of short rods. They were observed to be attached sideways or in a polar manner on root hairs, epidermal cells, and at junctions of tap and lateral roots. There was no evidence of specific stimulation of the homologous Rhizobium by the host plant as a prelude to nodulation.
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  • 54
    ISSN: 1573-5117
    Keywords: Ecology ; Porifera ; Spongillidae ; Taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The taxonomic validity, present distribution, and specific threats to the existence of the freshwater sponge, Anheteromeyenia biceps (Lindenschmidt, 1950) were investigated. The species, reported only from the type locality, Bessey Creek and Maple River, two streams flowing into Douglas Lake, Michigan, is relegated to synonomy with Ephydatia mülleri. Habitat data from Bessey Creek and Maple River, particularly physicochemical data, greatly extend the known environmental parameters of Heteromeyenia tubisperma and Ephydatia mülleri.
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    Environmental biology of fishes 3 (1978), S. 109-128 
    ISSN: 1573-5133
    Keywords: Ecology ; Fish sizes ; Feeding guilds ; Fish adaptations ; Caribbean ; Diversity ; Structure ; Competition ; Growth
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis The fishes associated with coral reefs offer excellent opportunities for the study of the factors that determine the species composition of complex, highly interactive communities. Amenable to sampling and direct observations many patch reefs are small enough to be studied as entire units and yet diverse enough to include a wide range of interactions. Coral reef fishes appear to be highly specialized in morphology, color, behavior and life cycles and yet colonization experiments and repeated censusing have shown a surprisingly high variation in the fishes that are associated in similar habitats or in the same habitat at different times. This has led to two different views: (i) the chaos view that holds that the species composition is due to random factors and chance colonization, and (ii) the order view that resource sharing adaptations determine which species can live together. This paper reviews some of the obvious adaptations of reef fishes. An examination of the maximum sizes reached by infaunal reef dwellers shows that the largest individual of each species differs by a constant proportion from the next larger and next smaller species. This suggests growth limitations by interspecies competition. A hypothetical model showing how this might work is offered and it is shown that as long as there are more species than can be accommodated in the community at any one time the number of combinations is great enough to give the appearance of randomness even though the individual species may have precise environmental requirements.
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    Environmental biology of fishes 1 (1976), S. 13-60 
    ISSN: 1573-5133
    Keywords: Ecosystem ; Production ; Fish ; Ecology ; Density ; Biomass ; Yield ; Succession ; Growth ; Sex ratio ; Fecundity ; Lake ; Rotenone ; Perch ; Charr ; Cyprinids
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Ecological fish production of 30.8 kg ha−1 yr−1 was estimated for a 6.2 ha Precambrian shield lake by treating it with a piscicide and removing all fish. This is one of the lowest productions recorded for any waterbody.Perca flavescens contributed 71% to this total. The five other indigenous species werePimephales promelas, Semotilus margarita, S. atromaculatus, Notemigonus crysoleucas andSalvelinus fontinalis. Seventy-five percent of the production occurred in the first year of life. A conventional capture-mark-recapture experiment conducted onP. flavescens prior to the piscicide treatment underestimated the density by nine times and the total production by eight times. The gravest error occurred in the estimation of density for the younger age groups. Production studies can quantify the ecological success of a species, and provide a measure of stress in aquatic ecosystems.
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    Environmental biology of fishes 1 (1977), S. 159-169 
    ISSN: 1573-5133
    Keywords: Cichlidae ; Field study ; South America ; Reproduction ; Behavior ; Ecology ; Tides ; Oxygen ; Carbon dioxide ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Parental behavior of the substrate-brooding cichlid, Biotodoma cupido, was studied in a small creek entering the lower Essequibo River, Guyana, where the freshwaters are affected by semi-diurnal tides. Physico-chemical variables of the tidal cycle were associated with the parental behavior of B. cupido. During late ebb and early flood tides, while off-spring were nest dependent, parents displayed intense aggression toward brood predators, mainly characins. At low tide, when the concentration of dissolved oxygen decreased to about 4 mg 1−1 and that of free carbon dioxide increased to 28 mg 1−1, parents entered a state of somnolence and brood predators vanished. Early flood tide brought an immediate and dramatic reversal of hypoxic and hypercarbic conditions and an associated renewal of aggressive and predatory activity. At very low tide, parents orally transferred the brood to a secondary nest depression in deeper water. The significance of water-level fluctuation to the evolution of this behavior, as well as that of parent-brood itineracy and the related phenomena of oral incubation and movable nests, is discussed.
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    Environmental biology of fishes 1 (1977), S. 181-188 
    ISSN: 1573-5133
    Keywords: Methods ; Ecology ; Fish abundance ; Diver counts ; Lake fish ecology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis The strip count method of determining fish densities was investigated for a small lake in a series of inshore sites that differed in their physical and biological characteristics and in the communities of fishes present. Overall total numbers of fish, number of species, ratio of commonest to total species, and 2nd commonest to total species, were investigated. Counts were made during time of the feeding peaks. Repeatability of the method was tested by series of five traverses at 10-minute intervals and was good both for total numbers of fish and ratio of commonest species to total fish. However, it varied with the habitat type, being excellent for small semi-isolated weedy sites, good for gravel-bottom sites, but only fair in open sandy bays where the strip was laid in the middle of an extensive area of homogeneous habitat. Series of comparative counts made (a) between morning and afternoon on the same day and, (b) between successive mornings, to determine how constant populations were between these time intervals, proved to be within the same general range but were significantly different by the Mann Whitney U test at the α = 0.05 level. In small lakes the strip count method proves to have considerable potential in the study of habitat specializations, taxocene structures, and relative abundances.
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    Environmental biology of fishes 11 (1984), S. 121-130 
    ISSN: 1573-5133
    Keywords: Ecology ; Habitat ; Feeding ; Age ; Growth ; Reproduction ; Mississippi
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Etheostoma swaini, the gulf darter, was collected from the Black Creek drainage in southern Mississippi (February 1978 – April 1979). The gulf darter generally inhabits small- to moderate-size creeks and occurs over a sand or sandy mud bottom, often in association with aquatic vegetation or a layer of organic debris. Larval dipterans were the most important food items, both numerically and volumetrically. Chironomids were found in 71–100% of the stomachs in all except the unusual March 16 collection. The length frequency distribution and the scale annuli analysis indicated there were three year-classes present in the population at any one time. Fifty-one percent of the specimens taken were less than 12 months old. During the mid-February to late March spawning season gulf darters were most often collected over clean gravel or gravelsand substrates. Laboratory observations suggest that the female burrows into the gravel where the demersal, adhesive eggs are deposited. Female gulf darters significantly outnumbered males at a ratio of 59:41.
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    Environmental biology of fishes 11 (1984), S. 173-190 
    ISSN: 1573-5133
    Keywords: Percidae ; Etheostomatini ; Darters ; Ecomorphology ; Embryology ; Ecology ; Early life history
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis The early development of northern logperch, Percina caprodes semifasciata, was examined from an ecological perspective and in relation to the theory of saltatory ontogeny. Steps, the intervals of relative homeostasis, separated by thresholds, rapid switches to new form and function resulting from canalization of changes in the preceeding step, are described and related to environmental factors. Adaptive shifts in growth allometries provided further evidence of the saltatory nature of ontogeny. Logperch eggs are small (1.2 mm diameter), demersal, and adhesive. The simple embryonic respiratory system reflects high oxygen availability on the lotic spawning grounds. Hatching occurs early, relative to other darters, and free embryos are pelagic. The small free embryos presumably drift downstream to lentic areas, where small planktonic food is more abundant. Logperch are therefore nonguarding, open substrate spawning lithopelagophils and, along with other Percina species, have not advanced from ancestral percid reproductive styles. Percina species have generally remained in ancestral habitats-rivers and lakes. The close correlation between developmental patterns of logperch and environmental factors is therefore interpreted as a restriction based on retention of ancestral characteristics, not as evidence of novel adaptations to new habitats.
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    Environmental biology of fishes 11 (1984), S. 277-299 
    ISSN: 1573-5133
    Keywords: Percidae ; Etheostomatini ; Ecomorphology ; Embryology ; Ecology ; Early life history ; Heterochrony
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis The early development of rainbow darter, Etheostoma caeruleum, was examined from an ecological perspective. Steps and thresholds of ontogeny to completion of body squammation are defined, and related to environmental factors. Rainbow darter eggs are about 2 mm diameter, considerably larger than those of related logperch (Percina caprodes). The embryonic vitelline respiratory plexus is much more extensive. The pelagic interval characteristic of logperch and ancestral percids is eliminated and onset of exogenous feeding is delayed. The larger larvae of the rainbow darter can begin feeding directly on aquatic insects, and complete their life cycle in streams. Therefore, shifts in the timing of important thresholds (e.g. exogenous feeding) are ecologically important. Furthermore, early maturation and/or delayed bone and scale formation may be responsible for reductions in the lateralis system and scalation in this and other darter species.
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    Environmental biology of fishes 3 (1978), S. 49-63 
    ISSN: 1573-5133
    Keywords: Algae ; Co-evolution ; Behavior ; Ecology ; Communities ; Seagrass ; Feeding selectivity ; Predatorprey ; Fish morphology ; Herbivore
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Herbivorous fishes and invertebrates are conspicious elements of coral reef communities where they predominate both in numbers and biomass. Herbivores and the coral reef algae on which they feed represent a co-evolved system of defense and counter-defense. Algal species have developed toxic, structural, spatial and temporal defense or escape mechanisms, while the herbivores employ strategies that involve anatomical, physiological and behavioral adaptations. Current research demonstrates that many reef fishes are highly selective in the algae they consume. Food selection in these fishes may be correlated with their morphological and digestive capabilities to rupture algal cell walls. Sea urchins select more in accordance with relative abundance, although certain algal species are clearly avoided. The determinants of community structure on coral reefs have yet to be established but evidence indicates a strong influence by herbivores. Reef herbivores may reduce the abundance of certain competitively superior algae, thus allowing corals and cementing coralline algae to survive. We discuss how the foraging activities of tropical marine herbivores affect the distribution and abundance of algae and how these activities contribute to the development of coral reef structure and the fish assemblages which are intimately associated with reef structure.
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    Environmental biology of fishes 3 (1978), S. 103-108 
    ISSN: 1573-5133
    Keywords: Community ; Larvae ; Diversity ; Competitive exclusion ; Habitat ; Cardinalfish ; Refugia ; Ecology ; Niche ; Resource partitioning
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis An alternative to the ‘reef fish lottery’ model is proposed for explaining instances of coexistence of reef fishes without apparent spatial resource partitioning. This model is termed ‘money-in-the-bank’ because of a financial analogy used to explain it. It stresses the importance of habitats that can support only one of two or more closely related species that coexist elsewhere. Populations living in such monospecific habitats could, according to the model, produce enough larvae to repopulate these habitats plus an excess that may settle in the multispecific habitats. Possible examples among cardinalfishes are given.
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  • 64
    ISSN: 1573-5133
    Keywords: Cichlid ; Ecology ; Behavior ; Evolution ; Tropics ; Polymorphism ; Central America ; Lake Malawi ; Africa
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Cichlasoma citrinellum is a polymorphic species whose individual coloration varies from the dark grey markings typical of the species to yellow, orange, and red. In Lake Jiloá, Nicaragua the depth distribution of these latter, nongrey, golden morphs shows dramatic seasonal variation. In the height of the dry season in February over 50% of the gold morphs occur above 9 m, but as the breeding season approaches they migrate deeper such that less than 7% of the gold population occurs above 9 m at the onset of the breeding season. During the rainy season when breeding occurs most of the gold morphs occur below 15 m. It appears that gold morphs ‘voluntarily’ move into deeper water to breed rather than being aggressively forced deeper by larger, territorial grey morphs as was implied in an earlier paper (McKaye & Barlow 1976). Since the morphs of this species assortatively mate and select different habitats in which to breed, future sympatric splitting of this species is possible. Likely examples of sympatric speciation and of incipient speciation in the family Cichlidae are discussed.
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  • 65
    ISSN: 1573-5133
    Keywords: Fish ; Nematode ; Populations ; Life cycle ; Host factors ; Ecology ; Parasites
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis A total of 314 white suckers (Catostomus commersoni) taken monthly during May to December 1975 and in April and May 1976 from southern Lake Huron, Ontario, Canada, were examined forCapillaria catostomi. Prevalence determined from fresh white suckers (66%) was significantly lower than from frozen white suckers (81%). However, there was no significant difference in prevalence ofC. catostomi in samples taken at monthly intervals; in male and female white suckers; or in the age categories. Mean intensity of infection was not significantly different in fresh (9.6 [± 13.41]) or frozen (10.4 [± 13.11]) white suckers. There was no significant difference in intensities between monthly samples in male and female white suckers or in the age categories. Suckers were infected with 1–172 worms. The percentage of male, female and immature worms did not change with sex or age of host or by month. The frequency distribution showed the parasites were overdispersed. A possible life cycle forC. catostomi involving an oligochaete intermediate host is discussed and an attempt made to explain the almost constant levels of prevalence and intensity.
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    Biopolymers 14 (1975), S. 1841-1846 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conformational phase diagram of poly(L-lysine) (4.6 × 10-4 M, residue) in sodium dodecyl sulfate (1.6 × 10-2 M) solution was constructed from circular dichroism results at various temperatures and pH's. Poly(L-lysine)-sodium dodecyl sulfate complexes undergo a β-helix transition upon raising the pH of the solution. The transition pH tends to shift downward at elevated temperatures. No helix-β transition can be detected for poly(L-lysine) in sodium dodecyl sulfate solution (pH 〉 11) even after 1-hr heating at 70°C. This is in marked contrast with uncharged poly(L-lysine) solution without sodium dodecyl sulfate, which is converted into the β-form upon mild heating of the solution above 50°C.
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    Biopolymers 14 (1975), S. 1885-1903 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A normal coordinate analysis of V-amylose has been performed for an isolated 61 helical chain. Negligible splitting from interactions of vibrations of successive residues is expected between A and E vibrational species due to the large size of the monomer unit. As a result, calculation of only the totally symmetric A modes represents an adequate approximation to the vibrational spectrum of helical polysaccharides. Using this method together with a valence force field we have obtained good agreement between the observed and calculated frequencies. In addition, the computed potential energy distribution and Cartesian displacement coordinates match previous experimental assignments, based on deuterium exchange. The analysis also supports the proposed mechanism for conversion of V-amylose to the more extended B-form. This conversion results in an observed frequency shift for the Raman line at 946 cm-1 which is predicted by the calculations.
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    Biopolymers 14 (1975), S. 2025-2033 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The circular dichroism of Ac-(Ala)x-OMe and H-Lys-(Lys)x-OH with x = 1, 2, 3, and 4 has been measured in aqueous solutions. The oligomers with x = 4 show similar circular dichroism spectra in water when the lysyl amino groups are protonated, and they respond in similar fashion to heating and to sodium perchlorate. Both oligomers at 15°C exhibit a positive circular dichroism band at 217-218 nm, which is eliminated by the isothermal addition of 4 M sodium perchlorate or by heating. The positive circular dichroism of the lysine oligomer is also eliminated when the pH is elevated to deprotonate the amino groups. Positive circular dichroism is still observed for Ac-(Ala)4-OMe at elevated pH. Circular dichroism spectra have been estimated for poly(L-alanine) and poly(L-lysine) as statistical coils under the above conditions, based on the trends established with the oligomers. Poly(L-lysine) and poly(L-alanine) are predicted to exhibit similar circular dichroism behavior in aqueous solution so long as the lysyl amino groups are protonated. The circular dichroism of the statistical coil of poly(L-lysine), but not poly(L-alanine), is predicted to change when the pH is elevated sufficiently to deprotonate the lysyl amino groups. These results suggest that the unionized lysyl side chains participate in interactions that are not available to poly(L-alanine). Hydrophobic interactions may occur between the unionized lysyl side chains. Protonation of the lysyl amino groups is proposed to disrupt these interactions, causing poly(L-alanine) and protonated poly(L-lysine) to have similar circular dichroism properties.
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    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Synthesis of nonapeptide hydrazide (sequence 93-101), [Thr107]-decapeptide (sequence 99-108), [Thr107]-tridecapeptide (sequence 96-108), [Thr107]-hexadecapeptide (sequence 93-108), [Thr107]-heptacosapeptide (sequence 82-108), and Nα-benzyloxycarbonyl-[Thr107]-dotetracontapeptide (sequence 67-108) of the proposed primary structure of baker's yeast iso-1-cytochrome c are described. Evidence is presented to indicate that these materials are sequentially homogeneous.
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    Biopolymers 14 (1975), S. 2115-2135 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Poly-β-benzyl-L-aspartate (poly[Asp(OBzl)]) forms either a lefthanded α-helix, β-sheet, ω-helix, or random coil under appropriate conditions. In this paper the Raman spectra of the above poly[Asp(OBzl)] conformations are compared. The Raman active amide I line shifts from 1663 cm-1 to 1679 cm-1 upon thermal conversion of poly[Asp(OBzl)] from the α-helical to β-sheet conformation while an intense line appearing at 890 cm-1 in the spectrum of the α-helix decreases in intensity. The 890 cm-1 line also displays weak intensity when the polymer is dissolved in chloroform-dichloroacetic acid solution and therefore is converted to the random coil. This line probably arises from a skeletal vibration and is expected to be conformationally sensitive. Similar behavior in the intensity of skeletal vibrations is discussed for other polypeptides undergoing conformational transitions.The Raman spectra of two cross-β-sheet copolypeptides, poly(Ala-Gly) and poly(Ser-Gly), are examined. These sequential polypeptides are model compounds for the crystalline regions of Bombyx mori silk fibroin which forms an extensive β-sheet structure. The amide I, III, and skeletal vibrations appeared in the Raman spectra of these polypeptides at the frequencies and intensities associated with β-sheet homopolypeptides. Since the sequential copolypeptides are intermediate in complexity between the homopolypeptides and the proteins, these results indicate that Raman structure-frequency correlations obtained from homopolypeptide studies can now be applied to protein spectra with greater confidence.The perturbation scheme developed by Krimm and Abe for explaining the frequency splitting of the amide I vibrations in β-sheet polyglycine is applied to poly(L-valine), poly-(Ala-Gly), poly(Ser-Gly), and poly[Asp(OBzl)]. The value of the “unperturbed” frequency, V0, for poly[Asp(OBzl)] was significantly greater than the corresponding values for the other polypeptides. A structural origin for this difference may be displacement of adjacent hydrogen-bonded chains relative to the standard β-sheet conformation.
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  • 71
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    Biopolymers 14 (1975) 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
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  • 72
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    Topics: Chemistry and Pharmacology
    Notes: Circular dichroism studies on synthetic peptides related to the C-terminal region of yeast iso-1-cytochrome c were carried out and compared with conformational studies on horse cytochrome c fragments. Evidence is presented for a weaker predisposition for ordered structure in the former peptides when compared with the corresponding region in horse cytochrome c. These findings agree with theoretical predictions and with observations that yeast and other mammalian type cytochromes c differ in several minor respects.
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  • 73
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    Biopolymers 14 (1975), S. 2107-2114 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A polarimetric electric-field-jump relaxation apparatus is described and used to determine the relaxation spectrum for the helix-coil transition of poly(α,L-glutamic acid) in water at 24°C. A maximum relaxation time of 1.7 μc occurs at the transition midpoint (pH = 5.9) yielding a rate constant for helical growth of 6 × 107 sec-1.
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  • 74
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    Biopolymers 14 (1975), S. 2181-2195 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Mixtures of a weak polybase (polyethylenimine) and a weak polyacid acrylamide-acrylic acid copolymer in aqueous solutions at several ionic strengths and polymer concentrations are studied potentiometrically. When the concentrations of the polyethylenimine and acrylamide-acrylic acid copolymer charges are not too different, phase separation into two liquid phases (“complex coacervation”) is observed. In the pH region where no phase separation occurs, potentiometric titrations are performed on mixtures of both polymers. From the titrations of polyethylenimine solutions, acrylamide-acrylic acid copolymer solutions, and the mixtures, the free energy of interaction has been evaluated according to the theory of Litan. The dependence of the free energy of interaction on pH, polymer concentrations, and ionic strength is explained quantitatively with a model of cooperative electrostatic physical association.
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  • 75
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    Topics: Chemistry and Pharmacology
    Notes: The problem of deducing the DNA structure with correct base pairing and specific symmetry is formulated in the form of algebraic equations. In this way the number of independent variables determining double-helix conformation can be reduced from six to four. The effectiveness of the method is illustrated by the computations for A-DNA and B-DNA. The method allows one to predict all possible conformations of the complementary nucleic acids.
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  • 76
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    Biopolymers 14 (1975), S. 2211-2230 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The synthesis and characterization of a series of sequential polypeptides with the repeating sequences Aze-Pro-Aze, Pro-Aze-Pro, Pro-Aze-Gly, Aze-Pro-Gly, Ala-Aze-Gly, Aze-Ala-Gly, and Pro-Pro-Gly are reported. The polymers were prepared by the active ester method, using the p-nitrophenyl, pentachlorophenyl, and N-hydroxysuccinimide esters as the polymerizable tripeptide derivatives. Except for poly(Ala-Aze-Gly) obtained via the N-hydroxysuccinimide ester, all polymers were isolated in good yields and have weight-average molecular weights in the range 10,000-30,000. The molecular weights have been determined by applying the calibrated gel chromatography system described by Fairweather et al. [J. Chromatogr. (1972) 67, 157] and by viscometry. All di- and tripeptide intermediates were chemically and optically pure.
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  • 77
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    Topics: Chemistry and Pharmacology
    Notes: Synthetic regular polytripeptides of the type (Gly-R2-R3) where R2, R3, or both, are imino acids have been widely studied as model compounds for collagen. One such polytripeptide is poly(Gly-Pro-Hyp), since triplets with this sequence constitute about 10% of collagen. Recently, a new model has been proposed for this polytripeptide in which one of the three peptide bonds in the tripeptide unit is in the cis conformation, and the γ-hydroxyl group of hydroxyproline forms a direct interchain hydrogen bond within the triple helix. We have confirmed this structure by model building using computer techniques, and the helical parameters obtained by us are close to the experimentally observed values. The model is also found to be comparable in stability with other models from energy considerations.
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  • 78
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    Topics: Chemistry and Pharmacology
    Notes: Several globular proteins have values of the Scheraga-Mandelkern β parameter significantly below the theoretical minimum value, β0 = 2.112 × 106, for an impermeable sphere. Using the Felderhof-Deutch generalization of the Debye-Bueche-Brinkman theory of hydrodynamics of porous spheres, we have shown that values of β slightly below this supposed minimum are theoretically expected. A porous sphere of uniform density has a minimum β of 2.084 × 106 at a Debye shielding ratio of 6.5, corresponding, for example, to a sphere radius of 11 Å and an inverse hydrodynamic shielding length of 0.6 Å-1, values not far from those of small proteins. A two-layer porous sphere model gives similar results. Although this is the first theoretical explanation of values of β below β0, the theory is incomplete since β values as low as 2.03 × 106 are observed.
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  • 79
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    Biopolymers 14 (1975), S. 2489-2506 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: NMR measurements of poly(γ-benzyl-L-glutamate) are reported in several different strengths of magnetic field to determine the relaxation time of the helix-coil transition. Nmr spectra of various samples had line shapes varying from the double to single, depending on the extent of the polydispersity of the sample. This result indicated that the correct line shape of a polypeptide is obscured in the overlapping of multipeaks, which are due to the heterogeneity of the molecular weight in the sample. Thus, the conventional line-shape analysis could not be applied to the kinetic study of the helix-coil transition of polypeptides without consideration of this polydispersity effect on the line shape.To overcome this difficulty, we measured linewidths of nmr spectra for fairly monodisperse samples, using various nmr spectrometers, having field strengths from 60 to 220 MHz. The results were analyzed by a quadratic equation, which involves an additional term proportional to the frequency difference of two sites. The equation differs from the conventional quadratic equation, usually utilized in the case of the fast-exchange limit, only in this additional term. This modification is required to evaluate correctly the unusual broadening of the linewidth resulting from the polydispersity effect and to determine the relaxation time reflected in nmr.Nmr spectra of three samples (DP-35, 85, and 250) were measured by 220-, 100-, and 60-MHz spectrometers in trifluoroacetic acid/chloroform at 28°C and linewidths were analyzed. Relaxation times of the helix-coil transition obtained at the transition midpoint are 2.5 × 10-4, 7 × 10-4, and 1.1 × 10-3 sec, for DP-35, 85, and 250, respectively.
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  • 80
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: Theoretical expressions are derived for the change in the polarized components of the fluorescence, resulting from the orientation of a rigid molecule bearing a chromophore with arbitrary angles for the absorption and transition moments \documentclass{article}\pagestyle{empty}\begin{document}$ \vec \mu _a $\end{document} and \documentclass{article}\pagestyle{empty}\begin{document}$ \vec \mu _e $\end{document} with respect to the molecular axis. The break in the symmetry relation HV = VH is related to the tilt angle between \documentclass{article}\pagestyle{empty}\begin{document}$ \vec \mu _a $\end{document} and \documentclass{article}\pagestyle{empty}\begin{document}$ \vec \mu _e $\end{document}. The theory is applied to a sonicated DNA-2-hydroxy-4,4′-diamidinostilbene complex, in the blue and red emission bands of this peculiar dye. Simultaneous measurements of linear dichroism and fluorescence lead to the determination of an angle of 47° between a fluorescent bound dye and the DNA axis, with no difference for the blue- and red-emitting species, but confirm the presence of nonfluorescent bound dye in a more perpendicular arrangement.
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  • 81
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    Biopolymers 14 (1975), S. 2613-2623 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The translational drag, rotational drag, and intrinsic viscosity of spherical multisubunit structures have been calculated analytically using the Felderhof-Deutch theory of polymer frictional properties. The structures considered were hollow shells, spheres with uniform subunit density, and spheres covered with a subunit layer of different density. Changes in the transport coefficients resulting from the random removal of subunits and from the variation of subunit size are calculated. For the case of the shell, the results agree with the numerical computations of Bloomfield, Dalton, and Van Holde [Biopolymers 5, 135, 149 (1967)].
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  • 82
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    Topics: Chemistry and Pharmacology
    Notes: Interactions of glutaraldehyde with either n-butylamine, poly(α,L-lysine), or collagen resulted in a fast release of protons in dilute aqueous solutions at various pH values, followed by much slower changes. The latter reactions, which extended over hours and days, were followed spectrophotometrically and revealed the formation of distinct absorption bands in the visible and near-ultraviolet regions in all the above systems. The visible-range bands disappeared upon treatment with sodium borohydride. A qualitative relationship between oxygen uptake by the system n-butylamine-glutaraldehyde and the slow formation of colored products has been established, while the chemical nature of the reaction products has not been determined.Sedimentation velocity, viscosity, and optical rotation measurements on the products of interaction between poly(L-lysine) and glutaraldehyde in aqueous solution indicated large conformational changes in the polyamino acid present in excess (in residues) over the dialdehyde. In particular, the intrinsic viscosity dropped considerably after interaction, indicating intramolecular crosslinking. At molar ratios of 1:1 between polylsine residues and aldehyde groups, intermolecular crosslinking of polylysine was obtained at pH 8.6.Electron microscopic examinations of collagen samples treated by glutaraldehyde at various pH values indicated changes from unordered to more ordered structures upon treatment with glutaraldehyde, in particular at pH 10.The present structural and optical investigations are considered to be relevant to tanning processes of hides and to fixation procedures.
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  • 83
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    Biopolymers 15 (1976), S. 1-14 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The template directed synthesis of poly[d(A-T)] from the nucleoside triphosphates in the presence of DNA polymerase I is carried out continuously in a stirred flow reactor for the first time. The initial objective is to test the kinetic stability of the established steady states at various flow rates. Graphical analysis predicts instable steady states for certain high flow rates. As a consequence of instabilities multiple steady states and steady-state hysteresis may occur. Steady-state hysteresis has now been found experimentally. For a different enzyme fraction of low exonuclease activity we found the steady-state absorbance at 260 nm to be almost invariant with flow rate at high enzyme concentrations even if the flow rate was increased by a large factor. We call this phenomenon kinetic buffering. Relaxation of a large flow perturbation approaches the steady state in a sigmoidal fashion. Concentration oscillations at 260 nm occurred in one experiment using an enzyme fraction of low exonuclease activity after perturbing the steady state by monomer (dATP). Advantages of the stirred flow reactor method over serial transfer are discussed.
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  • 84
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    Topics: Chemistry and Pharmacology
    Notes: The far-ultraviolet circular dichroic spectrum of the 39-residue peptide hormone porcine corticotropin and the biologically active fragment corticotropin 1-24 is negative from 250 nm to 195 nm in water, but in 6M guanidinium chloride a positive band appears at about 225 nm. The temperature and guanidinium chloride dependence of this spectral transition indicates the absence of any stable ordered secondary structure in corticotropin and the spectrum is seen to be in only partial agreement with results using the model peptide chromophore, Ala-Ala-Ala. Using oligopeptides containing aromatic amino acid residues sandwiched between glycyl residues, it is shown that the shape and intensity of the corticotropin 225 nm positive band which appears in 6M guanidinium chloride is in agreement with the far-ultraviolet transitions of the aromatic chromophores in the hormone. Curve resolution of the near-ultraviolet circular dichroic spectrum of corticotropin and comparison of the rotational strengths of the phenylalanyl and tyrosyl bands reveals no evidence for increased rotational freedom in 6M guanidinium hydrochloride. Spectral changes are observed, however, in the transitions arising from the single tryptophan. This study suggests that corticotropin in aqueous solution may serve as a better model for the circular dichroic spectrum of the aperiodic regions in globular proteins than either synthetic homopolypeptides or reference proteins for which spectral and X-ray diffraction data are available.
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    Biopolymers 15 (1976), S. 131-152 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An all-order classical coupled oscillator theory in which monomer band shapes are explicity taken into account is applied to the calculations of polynucleotide circular dichroism. Calculations are shown for ApA and oligoadenylic acid of varying chain lengths, in both RNA and B-DNA geometry, and the advantages of this theory are assessed. By introducing an effective dielectric constant, good agreement with measured spectra is obtained. Variations in monomer parameters are tested in an attempt to eliminate remaining discrepancies between calculated and measured spectra.
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    Biopolymers 15 (1976), S. 203-218 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: The Raman Spectra of bovine serum albumin have been obtained in the solute state, in alkaline and acidic solutions, and in the gel. The reversible denaturations of bovine serum albumin solutions by heat, acid's, and alkali were studied and a new mechanism for heat denaturation has been proposed based on a continuous unfolding of the α-helices.
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    Biopolymers 15 (1976), S. 219-225 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: New techniques in laser Raman spectroscopy are used to obtain spectra of aqueous solutions of lysozylme for frequency shifts as small as 5 cm-1. In addition, Raman measurements are made on two crystalline forms of hen egg white lysozyme. The spectra obtained from the solution and from the crystal are found to be similar for frequencies above 100 cm-1. However, a low-frequency band at 25 cm-1 observed in crystalline lysozyme is not found in the solution, indicating that this band cannot be attributed to an internal molecular vibration.
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    Biopolymers 15 (1976), S. 257-263 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The adsorption of protein films on polystyrene latex spheres was studied by optical mixing spectroscopy. With this technique, we show that both the hydrodynamic thickness of protein films and their optical density can be measured. Thus, we found that films of the glycoproteins isolated from the human erythrocyte membrane were four times as thick as films of either human serum albumin or bovine serum albumin for about the same surface coverage. This result suggests an end-on orientation for the adsorbed glycoprotein molecules, which is consistent with the model proposed by others for the orientation of these molecules at the surface of the red blood cell itself.
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    Biopolymers 15 (1976), S. 293-299 
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Solvent binding to bovine serum albumin in 2-chloroethanol-water mixed solvents of different composition, measured previously by Inoue and Timasheff (Biopolymers (1972) 11, 737-43) is applied to a hydrodynamic study of the solvated protein.From sedimentation and diffusion data, the apparent molecular weight of the solvated protein particle can be calculated, provided an average partial specific volume, computed from the composition of the particle, is introduced in Svedberg's equation. The unsolvated molecular weight of the protein can than be calculated by subtraction of the bound solvent. Further data on the hydrodynamic particle (f/fmin and axial ratio of the equivalent ellipsoid) are readily calculated from these experiments, and reinforce the supposition that 2-chloroethanol is a strong helix-inducing solvent.
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    Biopolymers 14 (1975), S. 2625-2637 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In order to obtain a molecular picture of the A and B forms of a DNA subunit, potential energy calculations have been made for dGpdC with C(3′)-endo and C(2′)-endo [or C(3′)-exo] sugar puckerings. These are compared with results for GpC. The global minima for dGpdC and GpC are almost identical. They are like A-form duplex DNA and RNA, respectively, with bases anti, the ω′, ω angle pair near 300°, 280°, and sugar pucker C(3′)-endo. For dGpdC, a B-form helical conformer, with sugar pucker C(2′)-endo and ω′ = 257°, ω = 298°, is found only 0.4 kcal/mol above the global minimum. A second low-energy conformation (2.3 kcal/mol) has ω′ = 263°, ω = 158° and ψ near 180°. This has dihedral angles like the original Watson-Crick model of the double helix. In contrast, for GpC, the C(2′)-endo B form is 6.9 kcal/mol above the global minimum. These theoretical results are consistent with experimental studies on DNA and RNA fibers. DNA fibers exist in both A and B forms, while RNA fibers generally assume only the A form. A low-energy conformation unlike the A or B forms was found for both dGpdC and GpC when the sugars were C(3′)-endo. This conformation - ω′,ω near 20°,80° - was not observed for C(2′)-endo dGpdC. Energy surface maps in the ω′,ω plane showed that C(2′)-endo dGpdC has one low-energy valley. It is in the B-form helical region (ω′ ∼ 260°, ω ∼ 300). When the sugar pucker is C(3′)-endo, dGpdC has two low-energy regions: the A-form helical region and the region with the minimum at ω′ = 16°, ω = 85°.
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    Biopolymers 15 (1976) 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Biopolymers 15 (1976), S. 403-414 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have carried out a detailed study of ligand binding of ferrihemoglobins under various conditions. Our results show that n varies with time and that this variation is paralleled by changes in the spectrum of methemoglobin. This suggests some form of structural perturbation. The time-dependent value of n is discussed in terms of the observed spectral changes accompanying prolonged equilibration.
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  • 93
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    Notes: The nmr titration curves of chemical shifts versus pH were observed for the protons of various histidine-containing di- and tripeptides. With these results, the macroscopic pKa values and the chemical shifts intrinsic to each ionic species were determined by a computer curve-fitting based on a simple acid dissociation sequence. The pKa value of the imidazole ring in N-acetyl-L-histidine methylamide was assumed to represent the intrinsic (or unperturbed) pKa of the imidazole rings of histidine having peptide linkages at both the CO and NH sides. The pKa values of the imidazole rings observed for most di- and tripeptides were reasonably reproduced by simple calculations using the intrinsic value and the perturbations due to the CO2- and NH3+ groups located at various positions. Some other factors affecting the pKa value of the imidazole ring are also discussed.
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    Biopolymers 15 (1976) 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
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  • 95
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    Topics: Chemistry and Pharmacology
    Notes: The hyperchromic and hypochromic changes in the intensity of the amide-I and amide-III lines of polypeptides and certain ring vibrations of the bases of polynucleotides are shown to be related to similar changes in the lower energy uv absorption bands. The selection rules strictly limit the pairs of excited electronic states that can contribute to the elements of the polarizability matrix. An energy-dependent term in this equation weights the contribution of the pairs of electronic transitions in favor of those involving the lower energy transitions. For both polypeptides and polynucleotides, there is a large hypochromic inensity change in the first π → π* exciton band upon the coil-to-helix transition. Through the selection rules, certain conformationally sensitive Raman lines are shown to derive their intensity predominantly from this band and hence also display hypochromism. Again, through an application of the selection rules, certain Raman lines can be demonstrated to depend predominantly for their intensity upon the n → π* transition, and consequently have the opposite hyperchromic intensity change upon the same conformational transition.
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    Biopolymers 15 (1976), S. 301-315 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Transient electric birefringence experiments have been performed on well-characterized highly monodisperse samples of tobacco mosaic virus (TMV). Experiments and calculations are presented that show that the sensitivity and accuracy of the traditional transient electric birefringence technique can be enhanced by several orders of magnitude through the use of a low-powered laser and crystal polarizing optics, signal averaging, and digital data processing. Measurements of the field-free decay of the birefringence yield for the rotational diffusion coefficient, DR = 318 ± 3 sec-1. The length of the rodlike virion, calculated from the Broersma equation with this value of DR and a rod diameter of 15 nm, is 292.5 ± 1.0 nm. Measurements of the growth of the birefringence when an electric field is applied across the sample yield μ2/kT(α∥ - α⊥) = 0.47 ± 0.07, where μ is the permanent dipole moment (assumed parallel to the symmetry axis of the virus) and α∥ - α⊥ is the electrical polarizability anistropy of the virus. Using the value of α∥ - α⊥ measured by O'Konski et al., we then obtain μ = 2.5 × 10-14 esu cm.
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  • 97
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    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The high-resolution nmr spectrum of baker's yeast tRNACUALeu, a recently sequenced non-denaturable tRNA, has been compared with the spectra of the native and denatured conformers of the closely related species tRNAUUGLeu. Because of the presence of many common base pairs in the different tRNA's, it is possible to assign most of the low-field resonances to specific secondary-structure base pairs. A comparison of the observed positions of the various resonances with those predicted by a semiempirical ring-current shift theory shows a root-mean-square deviation of 0.14, 0.11, and 0.12 ppm for tRNAUUGLeu (native), and tRNAUUGLeu (denatured), respectively. These results support the ring-current shift theory currently used to interpret the low-field nmr spectra of the tRNA molecules. Differences between the predicted and observed positions of some resonances provide new evidence for higher order effects such as shifts from second nearest neighbors, anomalous shifts exerted by G·U base pairs, and tertiary-structure effects. A model that was previously proposed for the denatured conformer of tRNAUUGLeu is also supported.
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  • 98
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 14 (1975), S. 319-334 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The properties of apomyoglobin were examined in aqueous solutions and various helix- and random-coil-forming solvents by solvent perturbation, optical rotation, circular dichroism, and viscosity measurements. The solvent perturbation data obtained in neutral aqueous solutions suggest 25-40% exposure of the two tryptophyl residues and 50-60% exposure of the three tyrosyls. The estimates of burial of these groups are in the ranges expected for myoglobin based on its X-ray structure. In the helicogenic alcohols, methanol, ethanol, 2-chloroethanol, trifluoroethanol, and 1-propyl alcohol, as well as in acidic solutions, 8 M urea and 6M guanidine hydrochloride, essentially all the tryptophyl and tyrosyl residues are found to be exposed to solvent based on this method. Analysis of the ORD and CD data indicates that in the alcohols the α-helix content of apomyoglobin has in most cases changed from 58-59% to about 80-95%. Analysis of the intrinsic viscosity data based on the equations of Simha and Kirkwood and Auer indicates that the polypeptide chain in these solvents has the dimensions of fully extended α-helical rods, with lengths of 221-251 Å and mean diameters of 12.8-13.6 Å. It is concluded that apomyoglobin in the various alcohols must have an extended but somewhat irregular rodlike structure, having a few bend or irregular sequences between the α-helical segments due largely to the presence of the four proline residues, 37, 88, 100, and 120 in the amino acid sequence.
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  • 99
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 14 (1975), S. 335-351 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The fluorescence parameters, lifetime, relative quantum yield, maximum and mean wavelength, half-width, and polarization, of bovine serum albumin (BSA) were measured at 15°C in aqueous solutions containing varying concentrations of different chemical perturbants, glycerol, Cu2+ ions, guanidine hydrochloride, and urea. By considering a quenching mechanism as being either dynamic or static, depending upon whether the quenching is or is not accompanied by a change in the fluorescence lifetime, we were able to correlate the changes produced in the various fluorescence parameters by the different chemical perturbants with changes in macromolecular structure as the concentration of perturbant was gradually increased. The addition of glycerol and of Cu2+ ions indicated that in aqueous BSA both tryptophan residues are below the surface of the macromolecule, out of contact with solvent water, and, as a consequence, they are statically quenched. “Ultra-Pure” guanidine hydrochloride at 2.4 M or more caused a drastic conformation change, which resulted in the emergence of a visible tyrosine peak at 304 nm in the BSA fluorescence spectrum when either 260- or 270-nm excitation was employed. With the same excitation, the enhancement of BSA tyrosine fluorescence by 6-8 M ultra-pure urea produced only a shoulder near 304 nm in the BSA fluorescence spectrum. We have introduced the use of a new relative quantum yield for protein fluorescence, q′, referenced to the quantum yield of unquenched free tryptophan, which eliminates the quenching action of water from the reference.
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  • 100
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 15 (1976) 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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