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  • Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.  (15)
  • National Academy of Sciences  (13)
  • Public Library of Science (PLoS)
  • 2020-2023  (28)
  • 2010-2014
  • 2020  (28)
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  • 1
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-07-07
    Description: Freshwater ecosystems are changing their natural conditions, influenced and accelerated by human activities. These processes are capable of changing the hydrological regime and the composition of the communities, letting the future of aquatic biodiversity unknown. The construction of dams has been one of the main factors responsible for environmental changes, such as nutrients depletion, increased water transparency and loss of biodiversity in freshwater ecosystems. The aim of our study was to analyze the functional and taxonomic dissimilarity of the zooplankton community and its drivers in response to the effect of the hydrological cycle (drought and rainy), in two highly distinct floodplains, the Upper Paraná River (river with a cascade of dams) and the Amazon. A total of 72 samples were collected (16 AMA dry and 16 on rainy and 20 PAR dry and 20 on rainy) from zooplankton communities as the response variable, phytoplankton as a predictor of food, fish as a predictor of potential predators and limnological variables. Were calculated β-Total diversity and partitioned in the components β-Repl and β-Rich (taxonomic and functional approach). We expect that environmental heterogeneity is going to drive higher values of beta diversity. In sequence, distance-based redundancy analysis (db-RDA) was calculated using the distance matrices generated in the functional and taxonomic beta to assess which are the determinants of zooplankton beta diversity. Thus, we hypothesized that biotic interactions will have stronger relationships with zooplankton dissimilarity during the drought and, limnological variables and spatial component will be more important during rainy season. Greater environmental heterogeneity was found in the Amazon floodplain and also in the dry season. The beta functional and taxonomic diversity of zooplankton showed a similar relationship between the floodplains and between the hydrological periods, represented by the β-Repl component, except for the drought season in the Upper Paraná River, where the functional diversity showed the lowest values, undetected by the taxonomic approach. The factors that influenced the zooplankton beta functional and taxonomic diversity in the two floodplains were different depending on the hydrological period, reflecting once again the difference in environmental heterogeneity and the strength of hydrodynamics within each plain. The analysis of the species and functional traits distribution and, which are the variables structuring this distribution is extremely important to analyze ecosystem processes and services, especially in impacted environments such as the Upper Paraná River floodplain, and a floodplain so biodiverse as the Amazon, and even so, with the prediction of the construction of numerous dams in its hydrographic basin. We reinforce the importance of periodic flooding in these floodplains, for the maintenance of biodiversity and ecosystem services over time, and in this way, prevent biotic homogenization, and consequently, conserve these aquatic ecosystems.
    Description: Os ecossistemas de água doce estão passando por frequentes alterações nas suas condições naturais, influenciadas e aceleradas por atividades humanas. Esses processos são capazes de alterar o regime hidrológico e a composição das comunidades, deixando cada vez mais incerto o futuro da biodiversidade aquática. A construção de barramentos tem sido um dos principais responsáveis por modificações ambientais, como a redução de nutrientes, o aumento da transparência da água e a perda de biodiversidade em ecossistemas dulcícolas. O objetivo deste estudo foi analisar a dissimilaridade funcional e taxonômica da comunidade zooplanctônica e seus determinantes em resposta ao efeito do ciclo hidrológico (seca e chuva) em duas planícies de inundação altamente distintas, a planície do alto rio Paraná (rio com cascata de barramentos) e planície Amazônica. Foram coletadas 72 amostras (16 na seca e 16 na cheia na planície Amazônica e 20 na seca e 20 na cheia na palnície do alto rio Paraná) das comunidades de zooplâncton como variável resposta, de fitoplâncton como variável preditora de alimentação, de peixes como preditor de potenciais predadores e as variáveis limnológicas. Foram calculadas a diversidade β-Total e particionada nos componentes β-Repl e β-Rich em uma abordagem taxonômica e funcional, e espera-se que a heterogeneidade ambiental conduza a maiores valores de diversidade beta. Na sequência, foi calculada através das matrizes de distância geradas na beta funcional e taxonômica a análise de redundância baseada em distância (db-RDA) para avaliar quais os determinantes da diversidade beta. Assim, foi hipotetizado que as interações bióticas apresentarão relações mais fortes com a dissimilaridade zooplanctônica na seca e as variáveis limnológicas e o espaço na cheia. Foi encontrada uma maior heterogeneidade ambiental na planície Amazônica e também no período de seca. A diversidade beta funcional e taxonômica do zooplâncton apresentou uma relação semelhante entre as planícies e entre os períodoshidrológicos, representados pelo componente β-Repl, exceto pelo período de seca na planície do alto rio Paraná onde a diversidade funcional apresentou os menores valores, não detectado pela abordagem taxonômica. Os fatores que influenciaram a diversidade beta funcional e taxonômica zooplanctônica nas duas planícies de inundação foram bem distintos dependendo do período hidrológico, refletindo mais uma vez a diferença na heterogeneidade ambiental e na força da hidrodinâmica dentro de cada planície. A análise da distribuição das espécies e dos traços funcionais, e de quais variáveis estruturam essa distribuição é de extrema importância para analisar os processos e serviços ecossistêmicos, especialmente em ambientes impactados como a planície de inundação do alto rio Paraná, e uma planície tão biodiversa como a Amazônica e, mesmo assim, com previsão de construção de inúmeros barramentos em sua bacia hidrográfica. Reforça-se a importância da inundação periódica nessas planícies, para a manutenção da biodiversidade e dos serviços ecossistêmicos ao longo do tempo e, desta forma, prevenir a homogeneização biótica, e consequentemente, a conservação dos ecossistemas aquáticos.
    Description: PhD
    Keywords: Zooplâncton de água doce ; Comunidades, Ecologia de ; Diversidades beta taxonômica e funcional ; Planícies de inundação ; Floodplain ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::Y::Zooplankton ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::S::Species diversity
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 56pp.
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  • 2
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-07-05
    Description: Although several studies have dealt with the description of morphological characters in Cichlidae, usually aiming for phylogenetic inference, little attention has been given to their musculature. The complete striated musculature of a cichlid species, Geophagus sveni Lucinda, Lucena & Assis, was described for the first time, with illustrations of all muscles and a protocol for the dissection of specimens. The striated musculature of at least of species of each genus in tribe Geophagini, among other cichlids, was compared, and 98 characters were described with the purpose of analysing their relation with the group’s phylogeny. This character matrix was employed to produce two unconstrained phylogenetic analyses, one weighted and the other unweighted. The myological characters were mapped upon a pre-existing phylogenetic hypothesis, for understanding the correlation among the characters and trophic specialisations of each taxon. The conclusion is that Geophagini specialised in sifting substrate (winnowers) tend to present a few convergent adaptations, manifested in the shape and degree of development of muscles such as adductor mandibulae, levator arcus palatini, dilatator operculi, adductor branchialis 1 and obliqui ventrales 1–2. This study facilitates future investigations on the functions of the striated muscles in fishes and their role in the processes of adaptive radiation, i.e., functional diversification.
    Description: Apesar de diversos estudos terem tratado da descrição de caracteres morfológicos em Cichlidae, geralmente para fins de inferência filogenética, muito pouco se estudou sobre sua musculatura. Descreveu-se, pela primeira vez, a musculatura estriada completa de uma espécie de ciclídeo, Geophagus sveni Lucinda, Lucena & Assis, com ilustrações de todos os músculos e um protocolo para a dissecção de exemplares. Comparou-se a musculatura esquelética de pelo menos uma espécie de cada gênero da tribo Geophagini, dentre outros ciclídeos, e descreveram-se 98 caracteres com o propósito de analisar sua relação com a filogenia do grupo. Essa matriz de caracteres foi empregada para produzir duas análises filogenéticas sem restrição, uma com pesagem e outra sem pesagem. Mapearam-se os caracteres miológicos sobre uma hipótese filogenética pré-existente, para a compreensão da correlação entre os caracteres e as especializações tróficas de cada táxon. Conclui-se que os Geophagini especializados em peneirar o substrato (winnowers) tendem a apresentar algumas adaptações convergentes, manifestadas na forma e no grau de desenvolvimento de músculos como adductor mandibulae, levator arcus palatini, dilatator operculi, adductor branchialis 1 e obliqui ventrales 1–2. Este estudo possibilita futuras investigações acerca das funções dos músculos estriados em peixes e seu papel nos processos de irradiação adaptativa, i.e., diversificação funcional.
    Description: PhD
    Keywords: Geophagini (Acanthopterygii, Cichlidae) “cará” ; Peixes de água doce ; Filogenia ; Morfologia ; Musculatura esquelética ; ASFA_2015::F::Freshwater fish ; ASFA_2015::T::Taxonomy ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::M::Morphology (organisms) ; ASFA_2015::P::Phylogeny ; ASFA_2015::M::Musculoskeletal system
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 234pp.
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  • 3
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-06-28
    Description: In Neotropical rivers the predation by fish and the structuring of the habitat by macrophytes influence the dynamics of the zooplankton community, altering the richness and composition of species and the richness and functional composition of the zooplankton and thus the functioning of the ecosystem. We analyzed the influence of macrophytes bank structure and predation by forage fish species on taxonomic and functional zooplankton diversity, estimated by different diversity indices (taxonomic and functional richness, taxonomic beta diversity and functional beta diversity). Thus, we assume that different levels of macrophytes structure and fish predation will alter the taxonomic and functional composition of the zooplankton (alpha and beta) between the analyzed points. Beta diversity was split into two distinct components, turnover and nesting. The zooplankton species richness was positively associated with the macrophytes richness and the macrophytes diversity. In turn, the functional richness of zooplankton had a positive association with fish richness and macrophytes richness. For the variation of total taxonomic beta diversity of zooplankton, the Generalized Dissimilarity Modeling (GDM) explained 32.58% of the total among the predictor variables. The macrophytes biomass represented the taxonomic turnover. The variation in total functional beta diversity of the zooplankton explained 9.98% by the GDM model. The abundance of fish represented the functional nesting. Macrophytes structure represented the taxonomic components and predation represented the functional components. The limnological heterogeneity of the coastal region of the Bay River made possible the colonization by multispecies macrophytes banks, influencing the alteration of the fish and zooplankton community and the more heterogeneous the environmental conditions, the greater is the capacity of colonization of different species, which can present different functional traits. The results indicate the importance of maintaining heterogeneous locations, the need to preserve the tributaries in river floodplain systems as they serve as nursery for fish spawning and contribute to a greater richness of fish, which causes an increase in the functional diversity of zooplankton.
    Description: Em rios neotropicais a predação por peixes e a estruturação do habitat por macrófitas influenciam na dinâmica da comunidade zooplanctônica, alterando a riqueza e composição de espécies e a riqueza e composição funcional do zooplâncton e, assim, o funcionamento do ecossistema. Analisou-se a influência da estruturação dos bancos de macrófitas e a predação por espécies de peixes forrageiras sobre a diversidade taxonômica e funcional zooplanctônica, estimadas por diferentes índices de diversidade (riqueza taxonômica e funcional, diversidade beta taxonômica e diversidade beta funcional). Assim, supõe-se que diferentes níveis de estruturação por macrófitas e predação por peixes alterarão a composição taxonômica e funcional do zooplâncton (alfa e beta) entre os pontos analisados. A diversidade beta foi particionada em dois componentes distintos, o turnover e o aninhamento. A riqueza de espécies do zooplâncton associou-se de forma positiva com a riqueza de macrófitas e a diversidade de macrófitas. Por sua vez, a riqueza funcional do zooplâncton teve associação positiva com a riqueza de peixes e a riqueza de macrófitas. Para a variação da diversidade beta total taxonômica do zooplâncton, a Modelagem de Dissimilaridade Generalizada (GDM) explicou 32,58% do total dentre as variáveis preditoras. A biomassa de macrófitas representou o turnover taxonômico. A variação da diversidade beta total funcional do zooplâncton, explicou 9,98% pelo modelo da GDM. A abundância de peixes representou o aninhamento funcional. A estruturação por macrófitas representou os componentes taxonômicos e a predação representou os componentes funcionais. A heterogeneidade limnológica da região litorânea do rio Baía possibilitou a colonização por bancos de macrófitas multiespecíficos, influenciando na alteração da comunidade de peixes e de zooplâncton e quanto mais heterogêneas as condições ambientais, maior é a capacidade de colonização de diferentes espécies, que podem apresentar distintos traços funcionais. Os resultados indicam a importância da manutenção de locais heterogêneos, a necessidade de preservação dos tributários em sistemas rio-planície de inundação por servirem como berçário para desova de peixes e contribuir para uma maior riqueza de peixes, o que causa um aumento na diversidade funcional do zooplâncton.
    Description: Masters
    Keywords: Zooplâncton de água doce ; Riqueza taxonômica e funcional ; Diversidade beta ; Taxonomic richness ; Functional richness ; Beta diversity ; Nestedness ; Turnover ; Comunidades, Ecologia de ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::Y::Zooplankton ; ASFA_2015::M::Macrophytes ; ASFA_2015::T::Taxonomy ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::P::Predation
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 49pp.
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  • 4
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-08-31
    Description: The construction of dams is among the main anthropogenic impacts in natural freshwater systems. The first consequence of impoundments is the formation of reservoirs upstream, which represents a completely new environment compared to the natural river. In addition to this primary impact, the variations in the reservoir water level may be considered another facet of disturbances. Although several studies investigated the processes that occur in reservoirs, there is a shortfall regarding the effects of the dam operation scheme on ecosystem health. Most dams are designed to operate under two almost contrasting schemes: storage (STR) and run-of-river (ROR). These alternative operation schemes result in very different temporal variations, with STR reservoirs presenting rapid fluctuations while ROR reservoirs have a relatively constant volume. Likewise, this difference in the temporal dynamics of water level likely affects the stability of these ecosystems. In order to investigate how the dam operation scheme could affect the temporal stability of freshwater ecosystems, we used the fish communities from two reservoirs in the Iguaçu River that operate under contrasting schemes. The hypothesis was that the STR reservoir would be less stable, considering the environmental heterogeneity created by frequent water level variations, and the interactions among species would be less important for the structure of the resident fish community. In the first approach, the focus was on stability in terms of the ability to resist and recover (i.e., resistance and resilience) to disturbances. In the second approach, empirical data and simulations were used to assess which mechanism (species interactions, environmental or demographic stochasticity) underlie the synchrony of fish communities. Contrary to the expectation, the results showed the ROR reservoir as less stable than the STR, and the mechanisms underlying species synchrony coincided between reservoirs but played opposite roles. More specifically, the temporal dynamics imposed by ROR operation may have weakened the species-environment relationships, which led to a less stable community. Although the results were consistent, they were only primary evidence and such cause-effect relationships between dam operation and its effects on ecosystem stability require further investigations.
    Description: A construção de barragens está entre os principais impactos antropogênicos em ambientes de água doce. A primeira consequência dos barramentos é a formação de um reservatório à montante, que representa um ambiente completamente modificado, em relação ao rio natural. Impactos secundários, como as variações no nível da água, também podem ser considerados outros tipos de distúrbio. Embora vários estudos investigaram os processos que ocorrem em reservatórios, existe uma lacuna a respeito dos efeitos do modo de operação da barragem sobre a estado dos ecossistemas. A maioria das barragens é projetada para operar sob dois modos: acumulação (ACU) e fio d’água (FDA). Esses modos alternativos resultam em variações temporais muito distintas, com reservatórios ACU apresentando flutuações rápidas, enquanto reservatórios FDA possuem volume relativamente constante. Do mesmo modo, essa diferença na dinâmica temporal do nível da água provavelmente afeta a estabilidade desses ecossistemas. A fim de investigar como o modo de operação da barragem pode afetar a estabilidade temporal dos ambientes de água doce, foram utilizadas comunidades de peixes de dois reservatórios do rio Iguaçu, que operam sob modos diferentes. A hipótese testada foi que o reservatório ACU seria menos estável, considerando a heterogeneidade ambiental criada pelas variações frequentes no nível da água, e as interações entre as espécies seriam menos importantes para a estrutura da comunidade de peixes. Na primeira abordagem, o foco foi na estabilidade em termos da habilidade em resistir e se recuperar (i.e., resistência e resiliência) aos distúrbios. Na segunda abordagem, dados empíricos e simulações foram utilizados para verificar quais mecanismos (interações entre espécies, ou estocasticidade ambiental/demográfica) seriam subjacentes à sincronia das comunidades de peixes. Ao contrário do esperado, os resultados mostraram que o reservatório FDA foi menos estável do que o reservatório ACU e os mecanismos subjacentes à sincronia das espécies coincidiram entre os reservatórios, mas com papéis opostos. Mais especificamente, a dinâmica temporal imposta pela operação do reservatório FDA provavelmente enfraqueceu as relações espécie-ambiente, o que levou a uma comunidade menos estável. Embora os resultados sejam consistentes, são apenas indícios primários e as relações de causa-e-efeito entre o modo de operação da barragem e a estabilidade dos ecossistemas requer investigações futuras.
    Description: PhD
    Keywords: Peixes de água doce ; Reservatórios de água doce ; Environmental stochasticity ; Reservatórios ; Comunidades, Ecologia de ; Competição interespecífica ; Impactos ambientais antropogênicos ; Manejo ; ASFA_2015::F::Freshwater fish ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::N::Niches ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::I::Impacts ; ASFA_2015::C::Competition ; ASFA_2015::R::Reservoirs (water) ; ASFA_2015::S::Species diversity ; ASFA_2015::I::Interactions ; ASFA_2015::I::Impoundments
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 98pp.
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  • 5
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-01
    Description: Plagioscion squamosissimus (Heckel, 1840) (Sciaenidae), known as “corvina” is a native species of Amazon basin and it is a model for studding their parasites. Intending to analyze ectoparasites ecological aspects, such as distribution and interactions, gills of twenty specimens were analyzed, from rio Tapajós, in the region of Santarém-PA, Brazil. Ecological analyzes considered distribution of parasites between host specimens and also microhabitats occupied by ectoparasites. Eighteen ectoparasites species were founded, fourteen monogenetic and four copepods. Considering species abundance, monogenetic were the dominant group and Euryhaliotrema thatcheri was the most abundant in all analyzed hosts. There was a significate correlation between some parasite species abundance and prevalence with total length and host condition factor. Each species of parasite presented an aggregate distribution pattern. The community of P. squamosissimus ectoparasites were interactive. Considering the distribution of the species in the gills, there was a significant difference in the composition between arches, segments and regions. It is suggested that this distribution is related to factors related to microhabitat, such as water flow and area available for fixation of parasites, as well as the structures of fixation of each species and interactions such as positive associations and competition. During the investigation of the material, specimens that differed from the species already described were founded, so three new monogenetic species were proposed, belonging to the genus Aetheolabes, Anakohnia and Euryhaliotrema, based on their morphological characteristics.
    Description: A corvina de água doce ou pescada branca, Plagioscion squamosissimus (Heckel, 1840) (Sciaenidae) se distribui pela bacia Amazônica e que como hospedeira, consiste em um modelo para o estudo de seus parasitas. Analisou-se os aspectos ecológicos da fauna ectoparasitária de P. squamosissimus, tais como a distribuição e as interações e entre as espécies, por meio das brânquias de vinte espécimes coletados no rio Tapajós, região de Santarém-PA. Considerou-se a distribuição de parasitas entre os espécimes de hospedeiros e também, a partir dos microhabitats que os ectoparasitas ocupavam nesses espécimes. Foram encontradas dezoito espécies de ectoparasitas, dentre os quais catorze monogenéticos e quatro copépodes. Em relação a abundância das espécies, os monogenéticos destacaram-se como grupo dominante e, dentre estas espécies, Euryhaliotrema thatcheri apresentou-se como a mais abundante em todos os hospedeiros analisados. Houve correlação da abundância e da prevalência de algumas espécies de parasitas com o comprimento total e o fator de condição dos hospedeiros. Cada espécie de parasita apresentou padrão de distribuição agregado. A comunidade de ectoparasitas de P. squamosissimus foi considerada interativa. Em relação à distribuição das espécies nas brânquias, houve diferença significativa na composição entre os arcos, segmentos e regiões. Sugere-se que esta distribuição se relaciona com fatores referentes ao microhabitat, como o fluxo de água e a área disponível para fixação dos parasitas, bem como as estruturas de fixação de cada espécie e também interações como associações positivas e competição. Durante a investigação do material, os espécimes encontrados diferiram das espécies previamente descritas, de modo que realizou-se a proposta de três novas espécies de monogenéticos pertencentes aos gêneros Aetheolabes, Anakohnia e Euryhaliotrema a partir de suas características morfológicas.
    Description: PhD
    Keywords: Fauna ectoparasitária ; Monogenea ; Copepoda ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::P::Parasites ; ASFA_2015::E::Ectoparasites ; ASFA_2015::E::Ectoparasitism
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 83pp.
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  • 6
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Peredo, E. L., & Cardon, Z. G. Shared up-regulation and contrasting down-regulation of gene expression distinguish desiccation-tolerant from intolerant green algae. Proceedings of the National Academy of Sciences of the United States of America, 117(29), 1(2020): 7438-17445, doi:10.1073/pnas.1906904117.
    Description: Among green plants, desiccation tolerance is common in seeds and spores but rare in leaves and other vegetative green tissues. Over the last two decades, genes have been identified whose expression is induced by desiccation in diverse, desiccation-tolerant (DT) taxa, including, e.g., late embryogenesis abundant proteins (LEA) and reactive oxygen species scavengers. This up-regulation is observed in DT resurrection plants, mosses, and green algae most closely related to these Embryophytes. Here we test whether this same suite of protective genes is up-regulated during desiccation in even more distantly related DT green algae, and, importantly, whether that up-regulation is unique to DT algae or also occurs in a desiccation-intolerant relative. We used three closely related aquatic and desert-derived green microalgae in the family Scenedesmaceae and capitalized on extraordinary desiccation tolerance in two of the species, contrasting with desiccation intolerance in the third. We found that during desiccation, all three species increased expression of common protective genes. The feature distinguishing gene expression in DT algae, however, was extensive down-regulation of gene expression associated with diverse metabolic processes during the desiccation time course, suggesting a switch from active growth to energy-saving metabolism. This widespread downshift did not occur in the desiccation-intolerant taxon. These results show that desiccation-induced up-regulation of expression of protective genes may be necessary but is not sufficient to confer desiccation tolerance. The data also suggest that desiccation tolerance may require induced protective mechanisms operating in concert with massive down-regulation of gene expression controlling numerous other aspects of metabolism.
    Description: Dr. Louise Lewis (University of Connecticut) provided F. rotunda and A. deserticola. Suzanne Thomas and Jordan Stark provided expert technical assistance. This work was supported by the NSF, Division of Integrative Organismal Systems (1355085 to Z.G.C.), and an anonymous donor (to Z.G.C.).
    Keywords: Aquatic green algae ; Desert-evolved green algae ; Extremophiles ; Microbiotic ; Crusts ; Scenedesmaceae
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 7
    Publication Date: 2022-10-31
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Northcutt, A. J., Kick, D. R., Otopalik, A. G., Goetz, B. M., Harris, R. M., Santin, J. M., Hofmann, H. A., Marder, E., & Schulz, D. J. Molecular profiling of single neurons of known identity in two ganglia from the crab Cancer borealis. Proceedings of the National Academy of Sciences of the United States of America, 116 (52) (2019): 26980-26990, doi: 10.1073/pnas.1911413116.
    Description: Understanding circuit organization depends on identification of cell types. Recent advances in transcriptional profiling methods have enabled classification of cell types by their gene expression. While exceptionally powerful and high throughput, the ground-truth validation of these methods is difficult: If cell type is unknown, how does one assess whether a given analysis accurately captures neuronal identity? To shed light on the capabilities and limitations of solely using transcriptional profiling for cell-type classification, we performed 2 forms of transcriptional profiling—RNA-seq and quantitative RT-PCR, in single, unambiguously identified neurons from 2 small crustacean neuronal networks: The stomatogastric and cardiac ganglia. We then combined our knowledge of cell type with unbiased clustering analyses and supervised machine learning to determine how accurately functionally defined neuron types can be classified by expression profile alone. The results demonstrate that expression profile is able to capture neuronal identity most accurately when combined with multimodal information that allows for post hoc grouping, so analysis can proceed from a supervised perspective. Solely unsupervised clustering can lead to misidentification and an inability to distinguish between 2 or more cell types. Therefore, this study supports the general utility of cell identification by transcriptional profiling, but adds a caution: It is difficult or impossible to know under what conditions transcriptional profiling alone is capable of assigning cell identity. Only by combining multiple modalities of information such as physiology, morphology, or innervation target can neuronal identity be unambiguously determined.
    Description: We thank members of the D.J.S., H.A.H., and E.M. laboratories for helpful discussions. We thank the Genomic Sequencing and Analysis Facility (The University of Texas [UT] at Austin) for library preparation and sequencing and the bioinformatics consulting team at the UT Austin Center for Computational Biology and Bioinformatics for helpful advice. This work was supported by National Institutes of Health grant R01MH046742-29 (to E.M. and D.J.S.) and the National Institute of General Medical Sciences T32GM008396 (support for A.J.N.) and National Institute of Mental Health grant 5R25MH059472-18 and the Grass Foundation (support for Neural Systems and Behavior Course at the Marine Biological Laboratory).
    Keywords: qPCR ; RNA-seq ; Stomatogastric ; Expression profiling
    Repository Name: Woods Hole Open Access Server
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  • 8
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lebrato, M., Garbe-Schönberg, D., Müller, M. N., Blanco-Ameijeiras, S., Feely, R. A., Lorenzoni, L., Molinero, J. C., Bremer, K., Jones, D. O. B., Iglesias-Rodriguez, D., Greeley, D., Lamare, M. D., Paulmier, A., Graco, M., Cartes, J., Barcelos E Ramos, J., de Lara, A., Sanchez-Leal, R., Jimenez, P., Paparazzo, F. E., Hartman, S. E., Westernströer, U., Küter, M., Benavides, R., da Silva, A. F., Bell, S., Payne, C., Olafsdottir, S., Robinson, K., Jantunen, L. M., Korablev, A., Webster, R. J., Jones, E. M., Gilg, O., Bailly du Bois, P., Beldowski, J., Ashjian, C., Yahia, N. D., Twining, B., Chen, X. G., Tseng, L. C., Hwang, J. S., Dahms, H. U., & Oschlies, A. Global variability in seawater Mg:Ca and Sr:Ca ratios in the modern ocean. Proceedings of the National Academy of Sciences of the United States of America, 117(36), (2020): 22281-22292, doi:10.1073/pnas.1918943117.
    Description: Seawater Mg:Ca and Sr:Ca ratios are biogeochemical parameters reflecting the Earth–ocean–atmosphere dynamic exchange of elements. The ratios’ dependence on the environment and organisms' biology facilitates their application in marine sciences. Here, we present a measured single-laboratory dataset, combined with previous data, to test the assumption of limited seawater Mg:Ca and Sr:Ca variability across marine environments globally. High variability was found in open-ocean upwelling and polar regions, shelves/neritic and river-influenced areas, where seawater Mg:Ca and Sr:Ca ratios range from ∼4.40 to 6.40 mmol:mol and ∼6.95 to 9.80 mmol:mol, respectively. Open-ocean seawater Mg:Ca is semiconservative (∼4.90 to 5.30 mol:mol), while Sr:Ca is more variable and nonconservative (∼7.70 to 8.80 mmol:mol); both ratios are nonconservative in coastal seas. Further, the Ca, Mg, and Sr elemental fluxes are connected to large total alkalinity deviations from International Association for the Physical Sciences of the Oceans (IAPSO) standard values. Because there is significant modern seawater Mg:Ca and Sr:Ca ratios variability across marine environments we cannot absolutely assume that fossil archives using taxa-specific proxies reflect true global seawater chemistry but rather taxa- and process-specific ecosystem variations, reflecting regional conditions. This variability could reconcile secular seawater Mg:Ca and Sr:Ca ratio reconstructions using different taxa and techniques by assuming an error of 1 to 1.50 mol:mol, and 1 to 1.90 mmol:mol, respectively. The modern ratios’ variability is similar to the reconstructed rise over 20 Ma (Neogene Period), nurturing the question of seminonconservative behavior of Ca, Mg, and Sr over modern Earth geological history with an overlooked environmental effect.
    Description: We thank the researchers, staff, students, and volunteers in all the expeditions around the world for their contributions. One anonymous referee and Bernhard Peucker-Ehenbrink, Woods Hole Oceanographic Institution, contributed significantly to the final version of the manuscript. This study was developed under a grant from the Federal Ministry of Education and Research to D.G.-S. under contract 03F0722A, by the Kiel Cluster of Excellence “The Future Ocean” (D1067/87) to A.O. and M.L., and by the “European project on Ocean Acidification” (European Community’s Seventh Framework Programme FP7/2007-2013, grant agreement 211384) to A.O. and M.L. Additional funding was provided from project DOSMARES CTM2010-21810-C03-02, by the UK Natural Environment Research Council, to the National Oceanography Centre. This is Pacific Marine Environmental Laboratory contribution number 5046.
    Keywords: global ; seawater ; Mg:Ca ; Sr:Ca ; biogeochemistry
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  • 9
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Chakraborty, A., Ruff, S. E., Dong, X., Ellefson, E. D., Li, C., Brooks, J. M., McBee, J., Bernard, B. B., & Hubert, C. R. J. Hydrocarbon seepage in the deep seabed links subsurface and seafloor biospheres. Proceedings of the National Academy of Sciences of the United States of America, 117(20), (2020): 11029-11037, doi: 10.1073/pnas.2002289117.
    Description: Marine cold seeps transmit fluids between the subseafloor and seafloor biospheres through upward migration of hydrocarbons that originate in deep sediment layers. It remains unclear how geofluids influence the composition of the seabed microbiome and if they transport deep subsurface life up to the surface. Here we analyzed 172 marine surficial sediments from the deep-water Eastern Gulf of Mexico to assess whether hydrocarbon fluid migration is a mechanism for upward microbial dispersal. While 132 of these sediments contained migrated liquid hydrocarbons, evidence of continuous advective transport of thermogenic alkane gases was observed in 11 sediments. Gas seeps harbored distinct microbial communities featuring bacteria and archaea that are well-known inhabitants of deep biosphere sediments. Specifically, 25 distinct sequence variants within the uncultivated bacterial phyla Atribacteria and Aminicenantes and the archaeal order Thermoprofundales occurred in significantly greater relative sequence abundance along with well-known seep-colonizing members of the bacterial genus Sulfurovum, in the gas-positive sediments. Metabolic predictions guided by metagenome-assembled genomes suggested these organisms are anaerobic heterotrophs capable of nonrespiratory breakdown of organic matter, likely enabling them to inhabit energy-limited deep subseafloor ecosystems. These results point to petroleum geofluids as a vector for the advection-assisted upward dispersal of deep biosphere microbes from subsurface to surface environments, shaping the microbiome of cold seep sediments and providing a general mechanism for the maintenance of microbial diversity in the deep sea.
    Description: We wish to thank Jody Sandel as well as the crew of R/V GeoExplorer for collection of piston cores, onboard core processing, sample preservation, and shipment. Cynthia Kwan and Oliver Horanszky are thanked for assistance with amplicon library preparation. We also wish to thank Jayne Rattray, Daniel Gittins, and Marc Strous for valuable discussions and suggestions, and Rhonda Clark for research support. Collaborations with Andy Mort from the Geological Survey of Canada, and Richard Hatton from Geoscience Wales are also gratefully acknowledged. This work was financially supported by a Mitacs Elevate Postdoctoral Fellowship awarded to A.C.; an Alberta Innovates-Technology Futures/Eyes High Postdoctoral Fellowship to S.E.R.; and a Natural Sciences and Engineering Research Council Strategic Project Grant, a Genome Canada Genomics Applications Partnership Program grant, a Canada Foundation for Innovation grant (CFI-JELF 33752) for instrumentation, and Campus Alberta Innovates Program Chair funding to C.R.J.H.
    Keywords: Deep biosphere ; Microbiome ; Dispersal
    Repository Name: Woods Hole Open Access Server
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  • 10
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in MBL Hernandez, C. M., van Daalen, S. F., Caswell, H., Neubert, M. G., & Gribble, K. E. A demographic and evolutionary analysis of maternal effect senescence. Proceedings of the National Academy of Sciences of the United States of America, 17(28), (2020):16431-16437, doi: 10.1073/pnas.1919988117.
    Description: Maternal effect senescence—a decline in offspring survival or fertility with maternal age—has been demonstrated in many taxa, including humans. Despite decades of phenotypic studies, questions remain about how maternal effect senescence impacts evolutionary fitness. To understand the influence of maternal effect senescence on population dynamics, fitness, and selection, we developed matrix population models in which individuals are jointly classified by age and maternal age. We fit these models to data from individual-based culture experiments on the aquatic invertebrate, Brachionus manjavacas (Rotifera). By comparing models with and without maternal effects, we found that maternal effect senescence significantly reduces fitness for B. manjavacas and that this decrease arises primarily through reduced fertility, particularly at maternal ages corresponding to peak reproductive output. We also used the models to estimate selection gradients, which measure the strength of selection, in both high growth rate (laboratory) and two simulated low growth rate environments. In all environments, selection gradients on survival and fertility decrease with increasing age. They also decrease with increasing maternal age for late maternal ages, implying that maternal effect senescence can evolve through the same process as in Hamilton’s theory of the evolution of age-related senescence. The models we developed are widely applicable to evaluate the fitness consequences of maternal effect senescence across species with diverse aging and fertility schedule phenotypes.
    Description: K.E.G. was supported by Grant 5K01AG049049 from the National Institute on Aging and by the Bay and Paul Foundations. H.C. and S.F.v.D. were supported by the European Research Council through Advanced Grants 322829 and 788195 and by the Dutch Research Council through Grant ALWOP.2015.100. C.M.H. was supported by a National Science Foundation Graduate Research Fellowship. M.G.N. received funding from The Paul MacDonald Fye Chair for Excellence in Oceanography at the Woods Hole Oceanographic Institution.
    Keywords: Aging ; Demography ; Fitness ; Maternal effects ; Selection gradients
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  • 11
    Publication Date: 2022-10-26
    Description: Author Posting. © National Academy of Sciences, 2020. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences of the United States of America 117(22), (2020): 12215-12221, doi: 10.1073/pnas.1918439117.
    Description: Picophytoplankton are the most abundant primary producers in the ocean. Knowledge of their community dynamics is key to understanding their role in marine food webs and global biogeochemical cycles. To this end, we analyzed a 16-y time series of observations of a phytoplankton community at a nearshore site on the Northeast US Shelf. We used a size-structured population model to estimate in situ division rates for the picoeukaryote assemblage and compared the dynamics with those of the picocyanobacteria Synechococcus at the same location. We found that the picoeukaryotes divide at roughly twice the rate of the more abundant Synechococcus and are subject to greater loss rates (likely from viral lysis and zooplankton grazing). We describe the dynamics of these groups across short and long timescales and conclude that, despite their taxonomic differences, their populations respond similarly to changes in the biotic and abiotic environment. Both groups appear to be temperature limited in the spring and light limited in the fall and to experience greater mortality during the day than at night. Compared with Synechococcus, the picoeukaryotes are subject to greater top-down control and contribute more to the region’s primary productivity than their standing stocks suggest.
    Description: We thank E. T. Crockford, E. E. Peacock, J. Fredericks, Z. Sandwith, the MVCO Operations Team, and divers of the Woods Hole Oceanographic Institution diving program. This work was supported by NSF Grants OCE-0119915 (to R.J.O. and H.M.S.) and OCE-1655686 (to M.G.N., R.J.O., A.R.S., and H.M.O.); NASA Grants NNX11AF07G (to H.M.S.) and NNX13AC98G (to H.M.S.); Gordon and Betty Moore Foundation Grant GGA#934 (to H.M.S.); and Simons Foundation Grant 561126 (to H.M.S.).
    Description: 2020-11-15
    Keywords: Picoeukaryotes ; Flow cytometry ; Matrix model ; Primary productivity
    Repository Name: Woods Hole Open Access Server
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  • 12
    Publication Date: 2022-10-26
    Description: © The Author(s), 202. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in McDermott, J. M., Sylva, S. P., Ono, S., German, C. R., & Seewald, J. S. Abiotic redox reactions in hydrothermal mixing zones: decreased energy availability for the subsurface biosphere. Proceedings of the National Academy of Sciences of the United States of America, 117(34), (2020): 20453-20461, doi:10.1073/pnas.2003108117.
    Description: Subseafloor mixing of high-temperature hot-spring fluids with cold seawater creates intermediate-temperature diffuse fluids that are replete with potential chemical energy. This energy can be harnessed by a chemosynthetic biosphere that permeates hydrothermal regions on Earth. Shifts in the abundance of redox-reactive species in diffuse fluids are often interpreted to reflect the direct influence of subseafloor microbial activity on fluid geochemical budgets. Here, we examine hydrothermal fluids venting at 44 to 149 °C at the Piccard hydrothermal field that span the canonical 122 °C limit to life, and thus provide a rare opportunity to study the transition between habitable and uninhabitable environments. In contrast with previous studies, we show that hydrocarbons are contributed by biomass pyrolysis, while abiotic sulfate (SO42−) reduction produces large depletions in H2. The latter process consumes energy that could otherwise support key metabolic strategies employed by the subseafloor biosphere. Available Gibbs free energy is reduced by 71 to 86% across the habitable temperature range for both hydrogenotrophic SO42− reduction to hydrogen sulfide (H2S) and carbon dioxide (CO2) reduction to methane (CH4). The abiotic H2 sink we identify has implications for the productivity of subseafloor microbial ecosystems and is an important process to consider within models of H2 production and consumption in young oceanic crust.
    Description: Financial support was provided by the National Aeronautics and Space Administration (NASA) Astrobiology program (Awards NNX09AB75G and 80NSSC19K1427 to C.R.G. and J.S.S.) and the NSF (Award OCE-1061863 to C.R.G. and J.S.S.). Ship and vehicle time for cruise FK008 was provided by the Schmidt Ocean Institute. We thank the ROV Jason II and HROV Nereus groups, and the captain, officers, and crew of R/V Atlantis (AT18-16) and R/V Falkor (FK008) for their dedication to skillful operations at sea. We thank our scientific colleagues from both cruises, as well as Meg Tivey, Frieder Klein, and Scott Wankel for insightful discussions. We are grateful to the editor and two anonymous reviewers for providing helpful comments and suggestions.
    Keywords: Hydrothermal vent ; Subsurface biosphere ; Bioenergetics ; Biogeochemistry
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  • 13
    Publication Date: 2022-10-26
    Description: Author Posting. © National Academy of Sciences, 2020. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences (2020): 201913625, doi: 10.1073/pnas.1913625117.
    Description: Oceanic transform faults display a unique combination of seismic and aseismic slip behavior, including a large globally averaged seismic deficit, and the local occurrence of repeating magnitude (M) ∼6 earthquakes with abundant foreshocks and seismic swarms, as on the Gofar transform of the East Pacific Rise and the Blanco Ridge in the northeast Pacific Ocean. However, the underlying mechanisms that govern the partitioning between seismic and aseismic slip and their interaction remain unclear. Here we present a numerical modeling study of earthquake sequences and aseismic transient slip on oceanic transform faults. In the model, strong dilatancy strengthening, supported by seismic imaging that indicates enhanced fluid-filled porosity and possible hydrothermal circulation down to the brittle–ductile transition, effectively stabilizes along-strike seismic rupture propagation and results in rupture barriers where aseismic transients arise episodically. The modeled slow slip migrates along the barrier zones at speeds ∼10 to 600 m/h, spatiotemporally correlated with the observed migration of seismic swarms on the Gofar transform. Our model thus suggests the possible prevalence of episodic aseismic transients in M ∼6 rupture barrier zones that host active swarms on oceanic transform faults and provides candidates for future seafloor geodesy experiments to verify the relation between aseismic fault slip, earthquake swarms, and fault zone hydromechanical properties.
    Description: We thank Joan Gomberg, Ruth Harris, Steve Hickman, Shane Detweiler, Mike Diggles, and two anonymous external reviewers for their thoughtful comments that helped to improve the manuscript. This study was supported by Natural Sciences and Engineering Research Council of Canada Discovery Grants RGPIN/418338-2012 and RGPIN-2018-05389; and NSF Grants OCE-10-61203 and OCE-18-33279.
    Description: 2020-10-28
    Keywords: Oceanic transform faults ; Earthquake rupture segmentation ; Aseismic transients ; Seismic swarms
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  • 14
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Buesseler, K. O., Boyd, P. W., Black, E. E., & Siegel, D. A. Metrics that matter for assessing the ocean biological carbon pump. Proceedings of the National Academy of Sciences of the United States of America, (2020): 201918114, doi: 10.1073/pnas.1918114117.
    Description: The biological carbon pump (BCP) comprises wide-ranging processes that set carbon supply, consumption, and storage in the oceans’ interior. It is becoming increasingly evident that small changes in the efficiency of the BCP can significantly alter ocean carbon sequestration and, thus, atmospheric CO2 and climate, as well as the functioning of midwater ecosystems. Earth system models, including those used by the United Nation’s Intergovernmental Panel on Climate Change, most often assess POC (particulate organic carbon) flux into the ocean interior at a fixed reference depth. The extrapolation of these fluxes to other depths, which defines the BCP efficiencies, is often executed using an idealized and empirically based flux-vs.-depth relationship, often referred to as the “Martin curve.” We use a new compilation of POC fluxes in the upper ocean to reveal very different patterns in BCP efficiencies depending upon whether the fluxes are assessed at a fixed reference depth or relative to the depth of the sunlit euphotic zone (Ez). We find that the fixed-depth approach underestimates BCP efficiencies when the Ez is shallow, and vice versa. This adjustment alters regional assessments of BCP efficiencies as well as global carbon budgets and the interpretation of prior BCP studies. With several international studies recently underway to study the ocean BCP, there are new and unique opportunities to improve our understanding of the mechanistic controls on BCP efficiencies. However, we will only be able to compare results between studies if we use a common set of Ez-based metrics.
    Description: We thank the many scientists whose ideas and contributions over the years are the foundation of this paper. This includes A. Martin, who led the organization of the BIARRITZ group (now JETZON) workshop in July 2019, discussions at which helped to motivate this article. We thank D. Karl for pointing us in the right direction for this paper format at PNAS and two thoughtful reviewers who through their comments helped to improve this manuscript. Support for writing this piece is acknowledged from several sources, including the Woods Hole Oceanographic Institution’s Ocean Twilight Zone project (K.O.B.); NASA as part of the EXport Processes in the global Ocean from RemoTe Sensing (EXPORTS) program (K.O.B. and D.A.S.). E.E.B. was supported by a postdoctoral fellowship through the Ocean Frontier Institute at Dalhousie University. P.W.B. was supported by the Australian Research Council through a Laureate (FL160100131).
    Keywords: Biological carbon pump ; Twilight zone ; Particle flux
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  • 15
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    Unknown
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-07-01
    Description: Generalist species can be composed of specialist individuals, who use a small part of the population's niche. This process is known as individual specialization and can involve changes in diet and morphology. In this study, we hypothesized that individual variations in the diet and morphology of fish associated with macrophytes are related to the habitat’s complexity and greater levels of individual specialization will be found in the intermediate levels of macrophyte biomass. Fish and macrophytes were sampled in 30 multispecific macrophytes stands with different biomasses in a 13.7 km stretch of the rio Baía (Paraná River floodplain). Habitat complexity was assessed using the biomass of aquatic macrophytes (five stands with low biomass, five with intermediate biomass and five with high biomass were selected) and the fish species used in this study was Moenkhausia forestii. The individuals' diet was evaluated using the volumetric method, and the morphology through 18 linear measurements and six area measurements. To assess individual specialization in the diet, the Specialization Index (IS) and the NODF nesting index were used. Individual morphological specialization was assessed using ecomorphological diversity for each level of macrophyte biomass. Correlations between diet and morphology were assessed using the Mantel test. IS and NODF values indicated greater individual specialization in the diet in macrophytes stands with low biomass. The greatest individual morphological specialization was found in macrophytes stands with intermediate biomasses. The Mantel test showed that there was no significant correlation between diet and morphology. The individual specialization of M. forestii diet is related to the increase in competition, mainly intraspecific, intensified by the low availability of resources in low biomass stands. Morphological specialization, in turn, is related to greater availability and accessibility to resources within the intermediate biomass stands, where there are ideal conditions for increasing richness and abundance of resources and little structural complexity when compared to high biomass stands.
    Description: Espécies generalistas podem ser compostas por indivíduos especialistas, que utilizam uma pequena parte do nicho da população. Este processo é conhecido como especialização individual e pode envolver mudanças na dieta e na morfologia. Investigou-se a hipótese de que variações individuais na dieta e na morfologia de peixes associados à macrófitas estão relacionadas à complexidade do habitat e que maiores níveis de especialização individual serão encontrados nos níveis intermediários de biomassa de macrófitas. Foram amostrados peixes e macrófitas em 30 bancos multiespecíficos de macrófitas com diferentes biomassas em um trecho de 13,7 km de extensão do rio Baía (planície de inundação do rio Paraná). A complexidade do habitat foi medida por meio da biomassa das macrófitas aquáticas (selecionou-se cinco bancos com biomassas baixas, cinco com biomassas intermediárias e cinco com biomassas altas) e a espécie de peixe utilizada foi Moenkhausia forestii. Analisou-se a dieta dos indivíduos mediante o método volumétrico e a morfologia mediante 18 medidas lineares e seis medidas de área. Para avaliar a especialização individual na dieta utilizou-se o Índice de Especialização (IS) e o Índice NODF de aninhamento. A especialização individual morfológica foi avaliada por intermédio da diversidade ecomorfológica para cada nível de biomassa de macrófitas. As correlações entre a dieta e a morfologia foram avaliadas por meio de um teste de Mantel. Os valores de IS e NODF indicaram maior especialização individual na dieta em bancos de macrófitas com baixas biomassas. A maior especialização morfológica individual foi verificada em bancos de macrófitas com biomassas intermediárias. O teste de Mantel mostrou que não houve correlação significativa entre a dieta e a morfologia. A especialização individual da dieta de M. forestii está relacionada com o aumento da competição, principalmente intraespecífica, intensificada pela baixa disponibilidade de recursos nos bancos de baixas biomassas. A especialização morfológica por sua vez está relacionada com a maior disponibilidade e acessibilidade aos recursos dentro dos bancos de biomassas intermediárias, onde existem condições ideais para o aumento da riqueza e abundância de recursos e pouca complexidade estrutural quando comparado aos bancos de biomassa alta.
    Description: Masters
    Keywords: Populações, Ecologia de ; Ecologia trófica ; Macrófitas aquáticas ; Especialização individual ; Indivíduos da mesma espécie ; Complexidade estrutural ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::A::Aquatic plants ; ASFA_2015::M::Macrophytes ; ASFA_2015::P::Population dynamics ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::P::Population structure ; ASFA_2015::T::Trophic levels
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 38pp.
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  • 16
    facet.materialart.
    Unknown
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-05
    Description: The differential distribution of productivity in reservoirs has consequences for the fish assemblage, influencing spatially in its distribution, along a longitudinal gradient. Following the hypothesis that the spatiotemporal dynamics of chlorophyll a and turbidity influence the distribution of the fish assemblage in the Sobradinho reservoir, BA, three predictions were tested: i) Whether the spatiotemporal variations of these variables, determined by digital processing of remote sensing images, follow the spatial zoning pattern described in the literature, for large reservoirs; ii) Whether with the increase in distance, in kilometers, from the collection points to the dam, there is an increase in the total abundance of fish; and iii) If, with the increase in productivity, represented by higher concentrations of chlorophyll a and turbidity, there is an increase in the abundance of fish (total or by trophic guild). The sampling was distributed in five periods, between April 2008 and July 2009, with at least one collection being carried out in each zone of the reservoir, fluvial, transition and lake, in each period. Bands 2 and 3 of scenes from the Landsat-5 satellite were selected, in which the chosen limnological variables show their peak of reflection. With the values of the collections in situ and the reflectance of the scenes, an interpolation was performed and, later, thematic maps of each of the variables were elaborated. The chlorophyll a and turbidity values of the ichthyofauna collection points were extracted from the interpolations. To analyze the existence of the longitudinal gradient, Spearman correlation analyses were performed between the value of the limnological variables and the distance from the collection point to the dam, obtained by extracting a longitudinal profile of the reservoir. To search for associations between limnological variables and ichthyofauna, Spearman's correlation analyses were performed with the value of the variables and total abundance and by trophic guilds. Also, the analyses were carried out dividing the collection points according to the reservoir area and the rainfall regime (dry and full). The Sobradinho reservoir showed a pattern of productivity zoning consistent with the typical pattern of large reservoirs. This zoning had a strong association with the distribution of fish abundance in the Sobradinho reservoir. There was an association between the abundance of fish in the lake area and the seasonal increase in productivity, with a remarkable decrease in abundance during the dry months and an increase in abundance during the floods. However, in the river zone, excess turbidity acted as a limiting factor. High values of this variable, also showing a greater flow of water, may have favored the dispersion of organisms to places of lesser environmental stress, reducing the abundance of fish in this region during floods. However, in general, the fluvial zone showed the highest abundances, exhibiting the well-known fluvial〉 transition〉 lacustrine pattern. The presence of favorable characteristics in the river zone, such as seasonal flooding and greater environmental heterogeneity, may have contributed to this result.
    Description: A distribuição diferencial da produtividade em reservatórios apresenta consequências sobre a assembleia de peixes, influenciando espacialmente na sua distribuição, ao longo de um gradiente longitudinal. Seguindo a hipótese de que as dinâmicas espaço-temporais de clorofila a e turbidez têm influência na distribuição da assembleia de peixes no reservatório de Sobradinho, BA, foram testadas três predições: i) Se as variações espaço-temporais destas variáveis, determinadas por processamento digital de imagens de sensoriamento remoto, seguem o padrão espacial de zonação descrito na literatura, para grandes reservatórios; ii) Se com o aumento da distância, em quilômetros, dos pontos de coleta em relação à barragem há incremento na abundância total de peixes; e iii) Se com o aumento da produtividade, representada por maiores concentrações de clorofila a e turbidez, há incremento na abundância de peixes (total ou por guilda trófica). A amostragem foi distribuída em cinco períodos, entre abril de 2008 e julho de 2009, sendo realizada pelo menos uma coleta em cada zona do reservatório, fluvial, transição e lacustre, em cada período. Selecionou-se as bandas 2 e 3 de cenas do satélite Landsat-5, nas quais as variáveis limnológicas escolhidas apresentam seu pico de reflexão. Com os valores das coletas in situ e a reflectância das cenas foi realizada uma interpolação e, posteriormente elaborou-se mapas temáticos de cada uma das variáveis. Os valores de clorofila a e turbidez dos pontos de coleta da ictiofauna foram extraídos das interpolações. Para analisar a existência do gradiente longitudinal, realizou-se análises de correlação de Spearman entre o valor das variáveis limnológicas e a distância do ponto de coleta em relação à barragem, obtidos através da extração de um perfil longitudinal do reservatório. Para buscar associações entre as variáveis limnológicas e a ictiofauna realizou-se análises de correlação de Spearman com o valor das variáveis e abundância total e por guilda trófica. Também, efetuou-se as análises dividindo os pontos de coleta de acordo com a zona do reservatório e com o regime pluviométrico (seca e cheia). O reservatório de Sobradinho apresentou um padrão de zonação de produtividade condizente com o padrão típico de grandes reservatórios. Esta zonação teve forte associação com a distribuição da abundância de peixes no reservatório de Sobradinho. Foi evidenciada uma associação entre a abundância de peixes da zona lacustre e o incremento sazonal da produtividade, sendo notável a diminuição da abundância durante os meses secos e o incremento desta durante as cheias. No entanto, na zona fluvial, o excesso de turbidez agiu como um fator limitante. Valores altos dessa variável, evidenciando também maior fluxo d’água, podem ter favorecido a dispersão dos organismos para locais de menor stress ambiental, diminuindo a abundância de peixes nesta região durante as cheias. Entretanto, em geral, a zona fluvial apresentou as maiores abundâncias, exibindo o conhecido padrão fluvial 〉 transição 〉 lacustre. A presença de características favoráveis na zona fluvial, como inundação sazonal e maior heterogeneidade ambiental, podem ter contribuido para esse resultado.
    Description: Masters
    Keywords: Ictiofauna de água doce ; Sensoriamento remoto orbital (SR) ; Reservatórios ; Variáveis limnológicas ; Gradiente longitudinal ; ASFA_2015::I::Ichthyofauna ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::R::Reservoirs (water) ; ASFA_2015::V::Variability ; ASFA_2015::L::Limnology ; ASFA_2015::R::Remote sensing
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 45pp.
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  • 17
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-05
    Description: The use of multimetric indices (MMIs) to assess ecological conditions in aquatic environments has been applied globally. These indices are practical tools that incorporate various biotic metrics at different levels of biological organization. However, criticism has been directed to the use of MMIs, especially regarding the methodological criteria applied in the process such as related to metric selection and scoring and identification of reference conditions that consider all sources of ecological integrity disturbance. A review of the scientific literature was carried out to evaluate processes of creation and validation of MMIs worldwide. The criteria used by scientists to identify reference conditions, metric selection and scoring, the main metrics globally used in MMIs, and the challenges in applying these indices were verified. It was identified whether nonnative species have been considered as a source of degradation of ecological integrity in the MMIs application. The results indicated that there are no common criteria for determining reference conditions, for metric selection and scoring, which makes it difficult to compare different programs and regions, and to develop or improve future MMIs. The results showed that metrics related to species richness were most frequently used in MMIs applied worldwide, thus, it represents a consistent response pattern in the assessment of ecological conditions. The results also indicate that differentiating natural variability from anthropogenic impacts was evidenced as the major challenge in the MMIs creation and application. The review of the scientific literature indicated that biological invasions are neglected in ecological integrity assessments, as nonnative species are rarely considered as a disturbing factor in identifying reference conditions and species origin metrics are not widely used in MMIs. The results presented in this review may promote the advancement and improvement of MMIs as bioassessment tools.
    Description: O uso de índices multimétricos (MMIs) para avaliação das condições ecológicas em ambientes aquáticos tem sido aplicado globalmente. Estes índices são ferramentas práticas que incorporam várias métricas bióticas em diferentes níveis de organização biológica. No entanto, críticas têm sido endereçadas ao uso de MMIs, especialmente em relação aos critérios metodológicos empregados no processo, como a seleção e pontuação de métricas e identificação de condições de referência que considerem todas as fontes de perturbação da integridade ecológica. Efetuou-se uma revisão de literatura científica a fim de avaliar processos de criação e validação de MMIs em todo o mundo. Verificou-se os critérios usados pelos cientistas para identificação de condições de referência, seleção e pontuação de métricas, as principais métricas usadas globalmente nos MMIs e os desafios na aplicação desses índices. Foi verificado se espécies não nativas têm sido consideradas como fonte de degradação da integridade ecológica na aplicação de MMIs. Os resultados obtidos indicaram que não existem critérios comuns para determinação das condições de referência e seleção e pontuação de métricas, o que dificulta a avaliação comparável entre diferentes programas e regiões e desenvolvimento ou aprimoramento de futuros MMIs. Os resultados mostraram que as métricas de riqueza de espécies foram as mais frequentemente usadas nos MMIs aplicados em todo o mundo, representando, assim, um padrão de resposta consistente na avaliação das condições ecológicas. Os resultados obtidos também sugerem que diferenciar a variabilidade natural dos impactos antropogênicos foi evidenciado como o maior desafio na criação e aplicação de MMIs. A revisão da literatura científica indicou que invasões biológicas são negligenciadas em avaliações de integridade ecológica, pois espécies não nativas são raramente consideradas como fator de perturbação na identificação de condições de referência e métricas de origem das espécies não são amplamente empregadas nos MMIs. Os resultados apresentados nessa revisão podem promover o avanço e aprimoramento dos MMIs como ferramentas de bioavaliação.
    Description: PhD
    Keywords: Ecossistemas de água doce ; Biomonitoramento ; Invasões biológicas ; Indicadores biológicos ; Índice de Integridade Biótica ; Seleção de métricas ; Integridade ecológica ; Indicadores ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::E::Ecosystems ; ASFA_2015::B::Bioindicators ; ASFA_2015::I::Indigenous species
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 92pp.
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  • 18
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-02
    Description: Changes in the biodiversity of parasites communities can be used as indicators of the healthy ecosystem as they reflect environmental impacts through their responses to changes in habitat. Thus, the aim of the study was to investigate the potential use of parasites from Geophagus brasiliensis as bioindicators of environmental changes. Three sample points were determined of rio Iguaçu with different degrees of environmental impact. Among 69 specimes analyzed of G. brasiliensis, 32 (46.3%) were parasitized by at least one parasite. A total of 56 specimens of endoparasites belonging to the phylum Nematoda were collected. The abundance of nematode species was significantly higher in fishes collected in point 3 (Kruskal-Wallis2;69 = 8.62; p = 0.01) and species composition between points were significantly different (F = 6.95, p = 0.002). There was no significant difference in relative condition factor (Kn) of G. brasilienses between the points (F2;66 = 2.54; p = 0.08) there was no correlation in Kn and abundance of nematodes (rs = 0.1; p = 0.4). The lower abundance of nematodes was observed in point 1 (critically degraded), due to this environment showing changes in abiotic factors, represented in the relatively high values of conductivity and phosphorus when compared with points 2 and 3 (moderately degraded).The results obtained in the present study indicate that the parasitic community of G. brasiliensis is characterized by low diversity in polluted locations, thus the absence of certain species of parasites and the occurrence of nematode species demonstrated a variation in response to the pollution gradient.
    Description: Alterações na biodiversidade de comunidades parasitárias são utilizadas como indicadoras da saúde de sistemas ecológicos, pois refletem impactos ambientais mediante suas respostas às alterações no habitat. Investigou-se o potencial uso de nematoides de Geophagus brasiliensis como indicadores de alterações ambientais mediante o registro de sua presença e ausência. Foram determinados três pontos amostrais no rio Iguaçu com diferentes graus de impacto ambiental. Entre os 69 espécimes de G. brasiliensis analisados, 32 (46,3%) estavam parasitados por pelo menos um parasita. Um total de 56 espécimes de endoparasitas pertencentes a Nematoda foram coletados. A abundância de espécies de nematoides foi significativamente maior em peixes coletados no ponto 3 (Kruskal-Wallis 2;69 = 8,62; p = 0,01) e a composição das espécies entre os pontos foram significativamente diferentes (F = 6,95, p = 0,002). Não houve diferença significativa no fator de condição relativo (Kn) de G. brasiliensis entre os pontos (F2;66 = 2,54; p = 0,08) e na correlação entre o Kn e a abundância de nematoides (rs = 0,1; p = 0,4). A menor abundância foi verificada no ponto 1 (criticamente degradado), devido a esse ambiente apresentar alterações nos fatores abióticos e na estrutura biológica, quando comparado com os pontos 2 e 3 (moderadamente degradados). Os resultados obtidos indicam que a comunidade parasitária de G. brasiliensis é caracterizada por baixa diversidade em locais poluídos, portanto a ausência de certas espécies de parasitas e a ocorrência de espécies de nematoides demonstraram uma variação em resposta ao gradiente de poluição.
    Description: Masters
    Keywords: Peixes de água doce ; Ictioparasitologia de água doce ; Ecotoxicologia aquática ; Rio impactado ; Parasitas ; Ecotoxicologia ; Bioindicadores ; ASFA_2015::F::Freshwater fish ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::P::Parasites ; ASFA_2015::E::Ecotoxicology ; ASFA_2015::B::Bioindicators ; ASFA_2015::I::Impacts
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 26pp.
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  • 19
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-02
    Description: Several studies have presented phylogeny of Geophagini based on morphological and molecular characters; however, neuroanatomical characters have not been explored for the tribe yet. Fish encephalon shows interspecific morphological variation, even in related groups, and can be used to build cladograms. The phylogeny of Geophagini is presented using the neuroanatomical characters mapped on a previous cladogram. This approach showed how the encephalon of Geophagini species have diversified among clades and how ecological features of some species can be related to changes (increase or decrease) of a particular structure. The morphological description of the encephalon of Geophagus sveni was also performed, with an illustration of the major encephalon structures and the origin of the cranial nerves, as well as a comparison of the morphometric differences between males and females.
    Description: Diversos estudos apresentaram a filogenia de Geophagini com base em caracteres morfológicos e moleculares, entretanto, caracteres neuroanatômicos ainda não foram explorados para a tribo. Os cérebros de peixes apresentam variação morfológica interespecífica, mesmo em grupos aparentados, podendo ser utilizados para construção de cladogramas. A filogenia de Geophagini é apresentada com a utilização dos caracteres neuroanatômicos mapeados sobre um cladograma prévio. Esta abordagem evidenciou como o encéfalo de Geophagini se diversificou entre os clados e como características ecológicas de cada espécie podem estar relacionados com modificações (aumento ou diminuição) de uma estrutura em particular. Foi realizada também a descrição morfológica do encéfalo de Geophagus sveni, com ilustração das principais estruturas do encéfalo e origem dos nervos cranianos, assim como a comparação das diferenças morfométricas entre machos e fêmeas.
    Description: Masters
    Keywords: Geophagini (Cichliformes: Cichlidae: Cichlinae) ; Filogenia ; Encéfalo ; Morfologia ; ASFA_2015::F::Freshwater fish ; ASFA_2015::P::Phylogeny ; ASFA_2015::M::Morphology (organisms) ; ASFA_2015::B::Brain ; ASFA_2015::A::Anatomical structures ; ASFA_2015::T::Taxonomy
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 137pp.
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  • 20
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-02
    Description: Biodiversity encompasses multiple aspects or facets changing in space and time. Before a loss of biodiversity in response to anthropogenic impacts it is of the utmost importance to determine what facets of biodiversity are altered and the determinants of such changes. By using information from species abundance, their evolutionary relatedness, and ecological traits we determine how the dissimilarity in composition of fish communities is influenced by temporal changes in land use and changes in environmental heterogeneity across space. In the first approach, we can see that changes in land use over time affected mainly the substitution of evolutionary lineages and functional traits. In the second approach, we find evidence of taxonomic and functional homogenization over time, likely following a decrease in diversity of traits related to habitat use. Furthermore, we found that ecological traits contributed differently to the changes in functional composition as well in their response to environmental heterogeneity. These results support recently evidence showing that anthropogenic impacts are driving changes in biological communities through a taxonomic and functional homogenization.
    Description: A biodiversidade está constituída por múltiplos aspectos ou facetas que mudam no espaço e tempo. Ante um cenário de perda de diversidade em resposta a impactos antropogênicos é urgente determinar quais aspectos da biodiversidade estão sendo alterados e os determinantes de tais mudanças. Usando informação de abundância de espécies, suas relações evolutivas e características ecológicas, determinamos como dissimilaridade da composição entre comunidades de peixes é influenciada por mudanças no uso da terra ao longo do tempo e mudanças da heterogeneidade ambiental no espaço. Na primeira abordagem, podemos ver que ao longo do tempo as mudanças no uso da terra afetam principalmente a substituição de linhagens evolutivas e características ecológicas. Na segunda abordagem, encontramos evidência de que as comunidades estão sendo homogeneizadas taxonômica e funcionalmente ao longo do tempo, provavelmente devido à perda de diversidade em características relacionadas ao uso de habitat. Ademais, encontramos que as características ecológicas contribuem de forma diferente para as mudanças na composição funcional e apresentam diferenças na resposta à heterogeneidade ambiental. Esses resultados suportam evidências de que impactos antropogênicos estão levando a mudanças nas comunidades biológicas, as quais estão tendendo a perder diversidade mediante homogeneização taxonômica e funcional
    Description: PhD
    Keywords: Peixes de água doce ; Comunidades, Ecologia de ; Impactos ambientais antropogênicos ; Mudanças espaciais e temporais ; Diversidades funcional e filogenética ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::L::Land use ; ASFA_2015::P::Phylogenetics ; ASFA_2015::F::Functional analysis ; ASFA_2015::E::Ecological diversity ; ASFA_2015::T::Temporal variations ; ASFA_2015::T::Taxonomy ; ASFA_2015::E::Environmental impact
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 89pp.
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  • 21
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-02
    Description: Different ecological processes (e.g., rescue effect, environmental filtering, limiting similarity and dispersal) shape the structure of ecological communities. These processes, which are related to the theories of metapopulation and metacommunities, guided this study. For this purpose, data from fish communities in streams in the Upper Araguaia river basin (Mato Grosso and the Goiás States, Brazil) were used. It was observed that the regional distribution of fish species was modelled according to niche attributes (position and breadth), body size, trophic position, and swimming capacity. The results indicated that average abundance, niche position and niche amplitude predict the regional distribution of the species. Taken together, these results suggest the importance of metapopulation dynamics and niche-based processes explaining the regional distribution of species in the studied system. At another time, it was tested whether the abundance of subordinate species (i.e., any species that are not dominant in a local community) was correlated with the functional distance between dominant and subordinate species. In the results, a negative relationship between these quantities and that the subordinate species had larger body sizes compared to the dominant species in the local communities. These results also suggest that species filtering is more important than the interspecific competition to explain the patterns of species abundance distribution. In this study, was analyzed the relative importance of local environmental, landscape and spatial variables in structuring fish communities in streams of “veredas” (small wetlands in the Cerrado). The local environmental variables, after controlling the effect of space, were clearly more important than those obtained at the landscape scale. In view of the observations, it is concluded that the use of landscape data, in studies seeking environmental correlates of local community structure, should not occur at the expense of obtaining local variables (mainly those related to the habitat structure). The results of the three investigations in this study shown the predominant role of local environmental filters in the structuring of the fish communities analyzed. Species with high niche amplitude tend to have wide regional distributions and small-bodied ones tend to be locally dominant.
    Description: Diversos processos ecológicos, tais como efeito resgate, filtragem ambiental, similaridade limitante e dispersão atuam na estruturação das comunidades. Esses processos, relacionados às teorias de metapopulação e metacomunidades, direcionaram este estudo. Para tanto, dados de comunidades de peixes em riachos do Alto da bacia do rio Araguaia (estados do Mato Grosso e Goiás, Brasil) foram utilizados. Foi observado que a distribuição regional das espécies de peixes em função de atributos do nicho (posição e amplitude), tamanho do corpo, posição trófica e capacidade natatória. Observou-se que apenas a abundância média, a posição de nicho e a amplitude de nicho predizem a distribuição regional das espécies. Em conjunto, esses resultados indicam a importância da dinâmica metapopulacional e de processos baseados no nicho para explicar a distribuição regional das espécies de peixes de riachos do Cerrado. Em outro momento, foi testado se a abundância de espécies subordinadas (i.e., quaisquer espécies que não são dominantes numa comunidade local) estava correlacionada com a distância funcional entre espécies dominantes e subordinadas. Nos resultados, encontrou-se uma relação negativa entre essas quantidades e que as espécies subordinadas apresentavam maiores tamanhos corpóreos em comparação com as espécies dominantes nas comunidades locais. Esses resultados mostram que a filtragem de espécies é mais importante que a competição interespecífica para explicar a distribuição da abundância entre as espécies. Neste estudo, foi analisada a importância relativa de variáveis ambientais locais, da paisagem e espaciais na estruturação de comunidades de peixes de riachos de veredas (pequenas áreas úmidas do Cerrado). As variáveis ambientais locais, após controlar o efeito do espaço, foram claramente mais importantes que aquelas obtidas na escala da paisagem. Diante das observações, conclui-se que a obtenção de dados de paisagem, em estudos que buscam variáveis ambientais relacionadas com a estruturação de comunidades locais, não deve ocorrer em detrimento da obtenção de variáveis locais (principalmente aquelas relacionadas com a estruturação dos habitats). Os resultados das três investigações deste estudo mostram o papel preponderante de filtros ambientais locais na estruturação das comunidades de peixes em riachos do Cerrado. Espécies de peixes com maiores amplitudes de nicho tendem a apresentar maiores distribuições regionais e espécies com menores tamanhos corpóreos tendem a ser localmente dominantes.
    Description: PhD
    Keywords: Peixes de riachos de cerrado ; Ecologia funcional ; Peixes de riachos de água doce ; Comunidades, Ecologia de ; Escala espaço-temporal ; Diversidade funcional ; Variáveis ambientais ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::S::Stream ecology ; ASFA_2015::F::Functional analysis ; ASFA_2015::N::Niches ; ASFA_2015::D::Dispersion ; ASFA_2015::A::Abundance ; ASFA_2015::F::Filters
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 105pp.
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  • 22
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-07
    Description: The diversity of aquatic macrophytes provides different local conditions, containing more microhabitat than homogeneous systems, thus supporting diverse biotic communities. Considering that the diversity of these plants can affect the invertebrate community and, consequently, the associated fish diet, this study assessed the influence of macrophyte diversity on the abundance, richness, and diversity of invertebrates, and the diet of Moenkhausia forestii. Fish, invertebrates, and macrophytes were sampled in macrophyte stands with different diversities, distributed along with a 14 km extension of the coastal region of Rio Baía (Upper Paraná River floodplain). The stands were separated into low, medium and high diversity, and they all had biomass that did not differ significantly. The invertebrates associated with the macrophytes and those consumed by M. forestii were identified and counted. Differences in abundance, richness, and diversity of invertebrates between levels of macrophyte diversity (low, medium and high) were tested using an ANOVA. Differences in the composition of the M. forestii diet were tested using a PERMANOVA, and feeding selectivity was calculated using the Ivlev index. Richness, diversity, and abundance of invertebrates were greater in high diversity macrophyte stands, however, for abundance, there was no significant difference between the levels of macrophyte diversity. The diet of M. forestii differed significantly between stands, and aquatic plants were the most used resource in low diversity. Invertebrates were dominant in high diversity, while aquatic plants and invertebrates were important in medium diversity of macrophytes. These results indicate that invertebrate communities were influenced by the diversity of macrophytes since richer and more diverse communities were also associated with more diverse stands of these plants. Changes observed in the diet of M. forestii were also associated with the diversity of macrophytes. In a scenario where involving changes in the attributes of these plants, and these stands become dominated by one or a few species of macrophytes, it is expected that this will reflect on other trophic levels, even at a local scale.
    Description: A diversidade de macrófitas aquáticas proporciona condições locais distintas, de modo a conter mais micro-habitat do que sistemas homogêneos, sustentando assim comunidades associadas diversas. Considerando que a diversidade destas plantas pode influenciar a comunidade de invertebrados e, consequentemente, a dieta de peixes associados, este estudo avaliou a influência da diversidade de macrófitas sobre a abundância, riqueza e diversidade de invertebrados, e sobre a dieta de Moenkhausia forestii. Peixes, invertebrados e macrófitas foram amostrados em bancos de macrófitas com diferentes diversidades, distribuídos ao longo de 14 km de extensão da região litorânea do rio Baía (planície de inundação do alto rio Paraná). Os bancos de macrófitas foram categorizados em diversidade baixa, média e alta, e todos apresentaram biomassa que não diferiram significativamente. Os invertebrados associados à macrófitas e os consumidos por M. forestii foram identificados e contados. Diferenças na abundância, riqueza e diversidade de invertebrados entre os níveis de diversidade de macrófitas (baixa, média e alta) foram testadas por uma ANOVA. Diferenças na composição da dieta de M. forestii entre os níveis de diversidade foram avaliadas por uma PERMANOVA. A riqueza, a diversidade e a abundância de invertebrados foram maiores em bancos de macrófitas com maior diversidade, porém para a abundância não houve diferença significativa entre os níveis de diversidade de macrófitas. A dieta de M. forestii diferiu significativamente entre os bancos, sendo que vegetal foi o recurso mais utilizado em baixa diversidade de macrófitas, invertebrado foi dominante em alta diversidade e vegetal e invertebrado foram importantes em média diversidade de macrófitas. Estes resultados indicam que as comunidades de invertebrados foram influenciadas pela diversidade de macrófitas, visto que comunidades mais ricas e diversas estiveram também associadas a bancos mais diversos destas plantas. As alterações constatadas na dieta de M. forestii também estiveram associadas à diversidade de macrófitas. A espécie passou de uma dieta onívora, em bancos de baixa diversidade, para uma dieta invertívora em bancos com alta diversidade de macrófitas. Assim, em um cenário onde haja mudanças nos atributos dessas plantas, e esses bancos passem a ser dominados por uma ou poucas espécies de macrófitas, é esperado que isso se reflita para os outros níveis tróficos, ainda que em uma escala local.
    Description: Masters
    Keywords: Macrófitas aquáticas ; Comunidades, Ecologia de ; Ecologia trófica ; Diversidade ; Peixes ; Alimentação ; Nicho ; Amplitude ; ASFA_2015::M::Macrophytes ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::E::Ecological diversity ; ASFA_2015::E::Ecology ; ASFA_2015::T::Trophic levels ; ASFA_2015::N::Niches ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::I::Invertebrate zoology
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 32pp.
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  • 23
    facet.materialart.
    Unknown
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-07-04
    Description: El Niño Southern Oscillation (ENSO) is a natural phenomenon that generates El Niño and La Niña events worldwide. Among the consequences caused by this climatic fluctuation, there are changes in the rainfall regime, which can trigger in times of extreme drought or extreme flood in freshwater environments, such as floodplains. The floodplain flood phases cause homogenization between the different environments, which also cause the homogenization of the fish assemblage in these floodplains. Among the rivers affected by ENSO is the Rio Paraná and the floodplain associated with its upper stretch, the upper Rio Paraná floodplain (UPRF). We aimed to study if El Niño phenomena change the functional diversity of fish in the floodplain between different environments, lakes and rivers. The results answered the hypotheses that: 1. El Niño events intensify floods in UPRF and, consequently, promote a functional homogenization of the fish assemblage; 2. Different functional guilds will be favored in times of El Niño or La Niña. The measurement of ENSO was obtained by the Oceanic Niño Index (ONI), while the hydrometric level of the upper Rio Paraná was obtained by daily measurement on a hydrometric ruler. The fish were collected with gillnets in different environments of the floodplain, lakes and rivers, being grouped in reproductive and trophic guilds, used to calculate indices of functional diversity. It was tested how ONI affects the hydrometric level of the upper Rio Paraná (Pearson's correlation); how ENSO affects the functional composition of floodplain fish (PCoA; PERMANOVA), as well as the effect of homogenization; which functional guilds are favored in El Niño or La Niña events and whether there is an additive effect of ONI and hydrometric level on the functional composition of the floodplain fish. The hydrometric level presented a positive correlation with ONI, indicating that El Niño events cause flooding in the upper Paraná River, while La Niña drought. The effect of El Niño's functional homogenization on fish was more visible in lakes, with rivers being less affected by ENSO, and floods were not intense enough to homogenize these two types of environment, this may be the same for other floodplains where ENSO acts in the same way. Fish with parental care and invertivores were favored in El Niño events, while herbivorous and piscivorous fish were favored in La Niña events. Migratory fish appears to respond one year after these climatic events, as they have a long-life cycle. The additive effect of ENSO and hydrometric level on the functional composition wasn’t found, because other regional and local factors can influence this interaction. However, even with these factors, the fish assemblage from the floodplain still responds to these climatic fluctuations, being more homogeneous in El Niño events than in La Niña events.
    Description: El Niño Oscilação Sul (El Niño Southern Oscillation – ENSO) é um fenômeno natural que gera eventos de El Niño e La Niña no mundo todo. Dentre as consequências causadas por essa oscilação climática, existem alterações no regime pluviométrico, que podem desencadear em épocas de extrema seca ou extrema cheia em ambientes de água doce, como as planícies de inundação. As fases de cheia de planícies de inundação causam uma homogeneização entre os diferentes ambientes, o que também causa a homogeneização da assembleia de peixes dessas planícies. Dentre os rios afetados por ENSO encontra-se o rio Paraná e a planície de inundação associada ao seu trecho superior, a planície de inundação do alto rio Paraná (PIARP). Estudou-se o fenômeno de El Niño e por meio da amostragem constatou-se mudanças na diversidade funcional dos peixes da planície de inundação entre diferentes ambientes, lagoas e rios. Os resultados responderam as hipóteses de que: 1. Eventos de El Niño intensifiquem cheias na PIARP e, consequentemente, provoquem uma homogeneização funcional da assembleia de peixes; 2. Diferentes guildas funcionais serão favorecidas em épocas de El Niño ou La Niña. Obteve-se a mensuração de ENSO pelo índice de ONI (Oceanic Niño Index), enquanto que o nível hidrométrico do alto rio Paraná foi obtido pela medição diária em uma régua hidrométrica. Os peixes foram coletados com redes de espera em diferentes ambientes da planície de inundação, lagoas e rios, sendo agrupados em guildas reprodutivas e alimentares, usados para calcular índices de diversidade funcional. Testou-se como o ONI afeta o nível hidrométrico do alto rio Paraná (correlação de Pearson); como o ENSO afeta a composição funcional dos peixes da planície de inundação (PCoA; PERMANOVA), bem como o efeito da homogeneização; quais guildas funcionais são favorecidas em eventos de El Niño ou La Niña e se há efeito aditivo de ONI e nível hidrométrico sobre a composição funcional dos peixes da planície. O nível hidrométrico apresentou correlação positiva com ONI, indicando que eventos de El Niño causam cheias no alto rio Paraná, enquanto La Niña, seca. O efeito da homogeneização funcional de El Niño sobre os peixes foi mais visível em lagoas, sendo que os rios foram menos afetados por ENSO, e as cheias não foram intensas o suficiente para homogeneizarem esses dois tipos de ambiente, podendo ser o mesmo para demais planícies de inundação onde ENSO age da mesma maneira. Peixes com cuidado parental e invertívoros foram favorecidos em épocas de El Niño, enquanto que, peixes herbívoros e piscívoros foram favorecidos em épocas de La Niña. Os peixes migradores aparentam responder um ano após esses eventos climáticos, por possuírem ciclo de vida longo. O efeito aditivo de ONI e nível hidrométrico sobre a composição funcional não foi encontrado, sendo que outros fatores regionais e locais podem influenciar nessa interação. Entretanto, mesmo com esses fatores a assembleia de peixes da planície de inundação ainda responde à essas oscilações climáticas, sendo mais homogênea em eventos de El Niño do que em eventos de La Niña.
    Description: Masters
    Keywords: Peixes de água doce, Assembleia de ; El Niño Oscilação Sul (ENSO) ; Diversidade e índices funcionais ; Mudanças climáticas ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::A::Assemblages ; ASFA_2015::D::Diversity index ; ASFA_2015::I::Impacts ; ASFA_2015::C::Climatic changes ; ASFA_2015::E::El Nino phenomena
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 49pp.
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  • 24
    facet.materialart.
    Unknown
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-07-04
    Description: We evaluated the effects of El Niño Southern Oscillation in the fish assemblages of the upper Paraná River floodplain. Specifically, we tested if: (i) reservoirs regulate ENSO effects on the hydrometric level in the rivers that compose the plain (Rio Paraná – intensely dammed and Rio Ivinhema – not dammed); (ii) ENSO events influence the structure of the fish assemblages of the study rivers; and that (iii) the hydrometric level and the ENSO events will act synergistically on the structure of the fish assemblage of the Rio Paraná and Rio Ivinhema. ENSO data was gathered at the National Oceanic and Atmospheric Administration (NOAA), using as proxy the “Oceanic Niño Index” (ONI). Water level data were gathered from the hydrological stations located in the sampled area. Fish samplings were carried out quarterly between the years 2000 and 2018. In general, ENSO events were correlated with the hydrometric level of the Rio Paraná and Rio Ivinhema, but with lower correlation for the Rio Paraná, probably due to the effects of dams upstream the plain. The fish assemblages of the Rio Paraná and Rio Ivinhema presented distinct structures, and the ENSO events appeared to influence this differentiation. Migratory species were negatively correlated with ONI, but the greatest abundances were found one year after the events of El Niño ("Lag" of one year). Higher values of the attributes of the fish assemblages were recorded for the Rio Ivinhema, in all events of ENSO (La Niña, Neutral and El Niño), probably because it presents more pristine conditions. The hydrometric level and the ENSO events act synergistically, but distinctively in the study rivers, which should be related to their degree of impacts. Thus, the influence of ENSO in the studied area is apparently minimized, especially in the Rio Paraná, due to the flow control imposed by dams located upstream of the area.
    Description: Avaliou-se os efeitos do El Niño Oscilação Sul (El Niño Southern Oscillation-ENSO) nas assembleias de peixes da planície de inundação do alto rio Paraná. Especificamente, foram testados: (i) os reservatórios minimizam os efeitos do ENSO no nível hidrométrico nos rios que compõem a planície (rios Paraná - intensamente represado e Ivinhema - não represado); (ii) os eventos ENSO influenciam a estrutura das assembleias de peixes dos rios estudados; (iii) o nível hidrométrico e os eventos ENSO atuam sinergicamente na estrutura da assembleia de peixes dos rios Paraná e Ivinhema. Coletaram-se os dados do ENSO no National Oceanic and Atmospheric Administration (NOAA), utilizando como proxy o "Índice Niño Oceânico" (Oceanic Niño Index-ONI). Os dados do nível hidrométrico foram coletados nas estações fluviométricas localizadas na área de estudo. As amostragens de peixes transcorreram trimestralmente entre os anos 2000 e 2018. Em geral, os eventos ENSO correlacionaram-se com o nível hidrométrico dos rios Paraná e Ivinhema, mas com menor correlação para o rio Paraná, provavelmente devido aos efeitos de barragens a montante da planície. As assembleias de peixes dos respectivos rios apresentaram estruturas distintas, e os eventos ENSO pareciam influenciar essa diferenciação. As espécies migradoras possuem correlação negativa com o ONI, mas com registro de maiores abundâncias um ano após os eventos de El Niño ("Lag" de um ano). Maiores valores de riqueza e abundancia total de espécies registradas para o rio Ivinhema, em todos os eventos do ENSO (La Niña, Neutro e El Niño), provavelmente por apresentar condições mais pristinas. O nível hidrométrico e os eventos do ENSO atuam sinergicamente, mas de maneira distinta nos rios estudados, o que deve estar relacionado ao grau de impacto antrópico. Assim, a influência do ENSO na área de estudo é aparentemente minimizada, principalmente no rio Paraná, devido ao controle de vazão imposto por barragens localizadas a montante da área.
    Description: Masters
    Keywords: Peixes de água doce, Assembleia de ; El Niño Southern Oscillation (ENSO) ; Diversidade taxonômica ; Mudanças climáticas ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::A::Assemblages ; ASFA_2015::E::El Nino phenomena ; ASFA_2015::C::Climatic changes ; ASFA_2015::T::Taxonomy
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 41pp.
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  • 25
    Publication Date: 2022-05-26
    Description: Author Posting. © National Academy of Sciences, 2020. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences of the United States of America 117(26), (2020): 14618-14621, doi:10.1073/pnas.2008009117.
    Description: Plastic pollution is one of the most visible and complex environmental issues today. Interested and concerned parties include researchers, governmental agencies, nongovernmental organizations, industry, media, and the general public. One key assumption behind the issue and the public outcry is that plastics last indefinitely in the environment, resulting in chronic exposure that harms animals and humans. But the data supporting this assumption are scant.
    Description: We thank Briana Prado, Cassia Armstrong, and Anna Walsh for their help with the review, Kenneth Kostel, Katie Linehan, Daniel Ward, and Rose Cory for feedback on an earlier version of this piece, John Furfey for assistance with tracking down the original sources of the environmental lifetime estimates, and Natalie Reiner for help with Fig. 1. We acknowledge financial support from Woods Hole Oceanographic Institution (Woods Hole, MA) and the Seaver Institute (Los Angeles, CA).
    Description: 2020-12-10
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 26
    Publication Date: 2022-10-26
    Description: Author Posting. © National Academy of Sciences, 2020. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences of the United States of America 117(25), (2020): 13983-13990, doi: 10.1073/pnas.1922190117.
    Description: The two dominant drivers of the global mean sea level (GMSL) variability at interannual timescales are steric changes due to changes in ocean heat content and barystatic changes due to the exchange of water mass between land and ocean. With Gravity Recovery and Climate Experiment (GRACE) satellites and Argo profiling floats, it has been possible to measure the relative steric and barystatic contributions to GMSL since 2004. While efforts to “close the GMSL budget” with satellite altimetry and other observing systems have been largely successful with regards to trends, the short time period covered by these records prohibits a full understanding of the drivers of interannual to decadal variability in GMSL. One particular area of focus is the link between variations in the El Niño−Southern Oscillation (ENSO) and GMSL. Recent literature disagrees on the relative importance of steric and barystatic contributions to interannual to decadal variability in GMSL. Here, we use a multivariate data analysis technique to estimate variability in barystatic and steric contributions to GMSL back to 1982. These independent estimates explain most of the observed interannual variability in satellite altimeter-measured GMSL. Both processes, which are highly correlated with ENSO variations, contribute about equally to observed interannual GMSL variability. A theoretical scaling analysis corroborates the observational results. The improved understanding of the origins of interannual variability in GMSL has important implications for our understanding of long-term trends in sea level, the hydrological cycle, and the planet’s radiation imbalance.
    Description: The research was carried out at JPL, California Institute of Technology, under a contract with NASA. This study was funded by NASA Grants NNX17AH35G (Ocean Surface Topography Science Team), 80NSSC17K0564, and 80NSSC17K0565 (NASA Sea Level Change Team). The efforts of J.T.F. in this work were also supported by NSF Award AGS-1419571, and by the Regional and Global Model Analysis component of the Earth and Environmental System Modeling Program of the US Department of Energy's Office of Biological & Environmental Research via National Science Foundation Grant IA 1844590. C.G.P. was supported by the J. Lamar Worzel Assistant Scientist Fund and the Penzance Endowed Fund in Support of Assistant Scientists at the Woods Hole Oceanographic Institution.
    Description: 2020-12-08
    Keywords: Sea level ; Climate variability ; Global mean sea level ; Satellite altimetry
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 27
    Publication Date: 2022-10-26
    Description: © The Author(s), [year]. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Broadley, M. W., Barry, P. H., Bekaert, D. V., Byrne, D. J., Caracausi, A., Ballentine, C. J., & Marty, B. Identification of chondritic krypton and xenon in Yellowstone gases and the timing of terrestrial volatile accretion. Proceedings of the National Academy of Sciences of the United States of America, 117 (25), (2020): 13997-14004, doi: 10.1073/pnas.2003907117.
    Description: Identifying the origin of noble gases in Earth’s mantle can provide crucial constraints on the source and timing of volatile (C, N, H2O, noble gases, etc.) delivery to Earth. It remains unclear whether the early Earth was able to directly capture and retain volatiles throughout accretion or whether it accreted anhydrously and subsequently acquired volatiles through later additions of chondritic material. Here, we report high-precision noble gas isotopic data from volcanic gases emanating from, in and around, the Yellowstone caldera (Wyoming, United States). We show that the He and Ne isotopic and elemental signatures of the Yellowstone gas requires an input from an undegassed mantle plume. Coupled with the distinct ratio of 129Xe to primordial Xe isotopes in Yellowstone compared with mid-ocean ridge basalt (MORB) samples, this confirms that the deep plume and shallow MORB mantles have remained distinct from one another for the majority of Earth’s history. Krypton and xenon isotopes in the Yellowstone mantle plume are found to be chondritic in origin, similar to the MORB source mantle. This is in contrast with the origin of neon in the mantle, which exhibits an isotopic dichotomy between solar plume and chondritic MORB mantle sources. The co-occurrence of solar and chondritic noble gases in the deep mantle is thought to reflect the heterogeneous nature of Earth’s volatile accretion during the lifetime of the protosolar nebula. It notably implies that the Earth was able to retain its chondritic volatiles since its earliest stages of accretion, and not only through late additions.
    Description: Samples were collected as part of Study YELL-08056: Xenon Anomalies in the Yellowstone Hotspot. We thank Annie Carlson and all of the rangers at the Yellowstone National Park for providing invaluable advice and help when collecting the samples. M.W.B., D.V.B., D.J.B., and B.M. were supported by the European Research Council (PHOTONIS Project Grant 695618). This work was partially supported by Grants G-2016-7206 and G-2017-9696 from the Alfred P. Sloan Foundation and the Deep Carbon Observatory (to P.H.B.) and UK National Environment Research Council Deep Volatile Grant NE/M000427/1 (to C.J.B.). We also thank Laurent Zimmerman for providing help with the analysis. Finally, we thank the editor for efficient handling of our manuscript and the two anonymous reviewers for their insightful comments. This is CRPG contribution 2998.
    Keywords: Origin of Earth’s volatiles ; Accretion ; Mantle plume ; Noble gases ; Yellowstone
    Repository Name: Woods Hole Open Access Server
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  • 28
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sutherland, K. M., Wankel, S. D., & Hansel, C. M. Dark biological superoxide production as a significant flux and sink of marine dissolved oxygen. Proceedings of the National Academy of Sciences of the United States of America, 117(7), (2020): 3433-3439, doi:10.1073/pnas.1912313117.
    Description: The balance between sources and sinks of molecular oxygen in the oceans has greatly impacted the composition of Earth’s atmosphere since the evolution of oxygenic photosynthesis, thereby exerting key influence on Earth’s climate and the redox state of (sub)surface Earth. The canonical source and sink terms of the marine oxygen budget include photosynthesis, respiration, photorespiration, the Mehler reaction, and other smaller terms. However, recent advances in understanding cryptic oxygen cycling, namely the ubiquitous one-electron reduction of O2 to superoxide by microorganisms outside the cell, remains unexplored as a potential player in global oxygen dynamics. Here we show that dark extracellular superoxide production by marine microbes represents a previously unconsidered global oxygen flux and sink comparable in magnitude to other key terms. We estimate that extracellular superoxide production represents a gross oxygen sink comprising about a third of marine gross oxygen production, and a net oxygen sink amounting to 15 to 50% of that. We further demonstrate that this total marine dark extracellular superoxide flux is consistent with concentrations of superoxide in marine environments. These findings underscore prolific marine sources of reactive oxygen species and a complex and dynamic oxygen cycle in which oxygen consumption and corresponding carbon oxidation are not necessarily confined to cell membranes or exclusively related to respiration. This revised model of the marine oxygen cycle will ultimately allow for greater reconciliation among estimates of primary production and respiration and a greater mechanistic understanding of redox cycling in the ocean.
    Description: This work was supported by NASA Earth and Space Science Fellowship NNX15AR62H to K.M.S., NASA Exobiology grant NNX15AM04G to S.D.W. and C.M.H., and NSF Division of Ocean Sciences grant 1355720 to C.M.H. This research was further supported in part by Hanse-Wissenschaftskolleg Institute of Advanced Study fellowships to C.M.H. and S.D.W. We thank Danielle Hicks for assistance with figures and Community Earth Systems Model (CESM) Large Ensemble Project for the availability and use of its data product. The CESM project is primarily supported by the NSF.
    Keywords: Microbial superoxide ; Reactive oxygen species ; Marine dissolved oxygen
    Repository Name: Woods Hole Open Access Server
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