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  • Springer Nature  (580)
  • American Chemical Society
  • American Physical Society
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  • 1
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    Allometric relationships of ecologically important Antarctic and Arctic zooplankton and fish species (2022)
    Springer
    In:  EPIC3Polar Bioloy, Springer
    Details
    Publication Date: 2023-06-21
    Description: Allometric relationships between body properties of animals are useful for a wide variety of purposes, such as estimation of biomass, growth, population structure, bioenergetic modelling and carbon flux studies. This study summarizes allometric relationships of zooplankton and nekton species that play major roles in polar marine food webs. Measurements were performed on 639 individuals of 15 species sampled during three expeditions in the Southern Ocean (winter and summer) and 2374 individuals of 14 species sampled during three expeditions in the Arctic Ocean (spring and summer). The information provided by this study fills current knowledge gaps on relationships between length and wet/dry mass of understudied animals, such as various gelatinous zooplankton, and of animals from understudied seasons and maturity stages, for example, for the krill Thysanoessa macrura and larval Euphausia superba caught in winter. Comparisons show that there is intra-specific variation in length–mass relationships of several species depending on season, e.g. for the amphipod Themisto libellula. To investigate the potential use of generalized regression models, comparisons between sexes, maturity stages or age classes were performed and are discussed, such as for the several krill species and T. libellula. Regression model comparisons on age classes of the fish E. antarctica were inconclusive about their general use. Other allometric measurements performed on carapaces, eyes, heads, telsons, tails and otoliths provided models that proved to be useful for estimating length or mass in, e.g. diet studies. In some cases, the suitability of these models may depend on species or developmental stages.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 2
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    Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus (2022)
    Wiley
    In:  EPIC3Ecology and Evolution, Wiley, 12(e8605)
    Details
    Publication Date: 2023-06-21
    Description: The copepod Calanus finmarchicus (Crustacea, Copepoda) is a key zooplanktonic spe-cies with a crucial position in the North Atlantic food web and significant contributor to ocean carbon flux. Like many other high latitude animals, it has evolved a programmed arrested development called diapause to cope with long periods of limited food sup-ply, while growth and reproduction are timed to take advantage of seasonal peaks in primary production. However, anthropogenic warming is inducing changes in the expected timing of phytoplankton blooms, suggesting phenological mismatches with negative consequences for the N. Atlantic ecosystem. While diapause mechanisms are mainly studied in terrestrial arthropods, specifically on laboratory model species, such as the fruit fly Drosophila, the molecular investigations of annual rhythms in wild marine species remain fragmentary. Here we performed a rigorous year-l ong monthly sampling campaign of C. finmarchicus in a Scottish Loch (UK; 56.45°N, 5.18°W) to generate an annual transcriptome. The mRNA of 36 samples (monthly triplicate of 25 individuals) have been deeply sequenced with an average depth of 137 ± 4 million reads (mean ± SE) per sample, aligned to the reference transcriptome, and filtered. We detail the quality assessment of the datasets and provide a high- quality resource for the investigation of wild annual transcriptomic rhythms (35,357 components) in a key diapausing zooplanktonic species.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 3
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    Transformation of dissolved organic matter by two 〈scp〉Indo‐Pacific〈/scp〉 sponges (2022)
    Wiley
    In:  EPIC3Limnology and Oceanography, Wiley, ISSN: 0024-3590
    Details
    Publication Date: 2023-06-21
    Description: Dissolved organic matter (DOM) is the largest organic carbon reservoir in the ocean and an integral component of biogeochemical cycles. The role of free-living microbes in DOM transformation has been studied thoroughly, whereas little attention has been directed towards the influence of benthic organisms. Sponges are efficient filter feeders and common inhabitants of many benthic communities circumglobally. Here, we investigated how two tropical coral reef sponges shape marine DOM. We compared bacterial abundance, inorganic and organic nutrients in off reef, sponge inhalant, and sponge exhalant water of Melophlus sarasinorum and Rhabdastrella globostellata. DOM and bacterial cells were taken up, and dissolved inorganic nitrogen was released by the two Indo-Pacific sponges. Both sponge species utilized a common set of 142 of a total of 3040 compounds detected in DOM on a molecular formula level via ultrahigh-resolution mass spectrometry. In addition, species-specific uptake was observed, likely due to differences in their associated microbial communities. Overall, the sponges removed presumably semi-labile and semi-refractory compounds from the water column, thereby competing with pelagic bacteria. Within minutes, sponge holobionts altered the molecular composition of surface water DOM (inhalant) into a composition similar to deep-sea DOM (exhalent). The apparent radiocarbon age of DOM increased consistently from off reef and inhalant to exhalant by about 900 14C years for M. sarasinorum. In the pelagic, similar transformations require decades to centuries. Our results stress the dependence of DOM lability definition on the respective environment and illustrate that sponges are hotspots of DOM transformation in the ocean.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 4
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    A common temperature dependence of nutritional demands in ectotherms (2022)
    Wiley
    In:  EPIC3Ecology Letters, Wiley, ISSN: 1461-023X
    Details
    Publication Date: 2023-06-21
    Description: In light of ongoing climate change, it is increasingly important to know how nutritional requirements of ectotherms are affected by changing temperatures. Here, we analyse the wide thermal response of phosphorus (P) requirements via elemental gross growth efficiencies of Carbon (C) and P, and the Threshold Elemental Ratios in different aquatic invertebrate ectotherms: the freshwater model species Daphnia magna, the marine copepod Acartia tonsa, the marine heterotrophic dinoflagellate Oxyrrhis marina, and larvae of two populations of the marine crab Carcinus maenas. We show that they all share a non-linear cubic thermal response of nutrient requirements. Phosphorus requirements decrease from low to intermediate temperatures, increase at higher temperatures and decrease again when temperature is excessive. This common thermal response of nutrient requirements is of great importance if we aim to understand or even predict how ectotherm communities will react to global warming and nutrient-driven eutrophication.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 5
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    Modeling drivers of biodiversity change emphasizes the need for multivariate assessments and rescaled targeting for management (2022)
    Wiley
    In:  EPIC3Conservation Science and Practice, Wiley, 4(10), ISSN: 2578-4854
    Details
    Publication Date: 2023-10-04
    Description: The current policy and goals aimed to conserve biodiversity and manage biodiversity change are often formulated at the global scale. At smaller scales however, biodiversity change is more nuanced leading to a plethora of trends in different metrics of alpha diversity and temporal turnover. Therefore, large-scale policy targets do not translate easily into local to regional management decisions for biodiversity. Using long-term monitoring data from the Wadden Sea (Southern North Sea), joining structural equation models and general dissimilarity models enabled a better overview of the drivers of biodiversity change. Few commonalities emerged as birds, fish, macroinvertebrates, and phytoplankton differed in their response to certain drivers of change. These differences were additionally dependent upon the biodiversity aspect in question and which environmental data were recorded in each monitoring program. No single biodiversity metric or model sufficed to capture all ongoing change, which requires an explicitly multivariate approaches to biodiversity assessment in local ecosystem management.
    Repository Name: EPIC Alfred Wegener Institut
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  • 6
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    Mining questions of ‘what’ and ‘who’: deepening discussions of the seabed for future policy and governance (2022)
    Springer Nature
    In:  EPIC3Maritime Studies, Springer Nature, 21(3), pp. 327-338, ISSN: 1872-7859
    Details
    Publication Date: 2023-10-30
    Description: 〈jats:title〉Abstract〈/jats:title〉〈jats:p〉In spite of a proliferation of academic and policy-oriented interest in deep sea mining (DSM), this paper argues that two underlying questions remain underexplored. The first relates to 〈jats:italic〉what〈/jats:italic〉 exactly the seabed 〈jats:italic〉is〈/jats:italic〉; the second to 〈jats:italic〉who〈/jats:italic〉 the stakeholders 〈jats:italic〉are〈/jats:italic〉. It is argued that a greater interrogation of how the seabed is defined and understood, and a deeper consideration of how stakeholders are identified and the politics of their inclusion, is crucial to the enactment of policy and planning techniques. Through the analysis of current regulations to govern DSM in both national and international jurisdictions, this paper critically examines these seemingly banal but vital questions in different contexts. It is contended that most regulations are ‘fuzzy’ when it comes to addressing these questions, with the result that different understandings of the seabed and the implications of mining are ignored and that who stakeholders are and how they are defined causes many relevant voices to be unheard. It is argued, therefore, that it is imperative to address these often-overlooked questions directly in order to inform future seabed policy and governance.〈/jats:p〉
    Repository Name: EPIC Alfred Wegener Institut
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  • 7
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    Exploiting the legacy of N.N. Ambraseys: known and unknown earthquakes in the Anatolian area (2022)
    Springer
    Details
    Publication Date: 2023-05-25
    Description: N.N. Ambraseys left us a wealth of papers and volumes on a number of topics; many of them concern the historical earth- quake investigation. One of the last works is the 2009 volume (Ambraseys in Earthquakes in the Eastern Mediterranean and the Middle East: a multidisciplinary study of 2000 years of seismicity, Cambridge, Cambridge, UK, 2009), where he summarizes the results of more than thirty years of investigation through archives and libraries, covering earthquakes of a large area, from Albania to Caucasus. For each earthquake, a short summary of the main effects is supplied, together with the list of the sources used. Such information is intended as material for assessing location and size of the earthquakes, task that the author accomplished only in a very preliminary way for a few earthquakes, only. In addition to exhaustive descriptions of the most known earthquakes and the relevant historical sources, the volume contains information on a large number of earthquakes, so far unknown to the current earthquake catalogues. This paper intends to represent a homage to his immense work, partially showing the potential of his volume. We briefly present here some case histories, including the preliminary location and size of the earthquakes – known and unknown—around Anatolia. We add some examples of how he was able to prove that some alleged earthquakes are actually to be considered as fake or very doubtful. We also present the damage information supplied for some known and unknown earthquakes, and how they can be used for assessing location and size of them.
    Description: Published
    Description: 555–568
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: N/A or not JCR
    Keywords: earthquakes ; Anatolia ; Historical seismology ; 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 8
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    Assessing the impact of an updated spatial correlation model of ground motion parameters on the italian shakemap (2022)
    Springer
    Details
    Publication Date: 2023-05-25
    Description: This study develops a new spatial correlation model for Italy using the most up-to-date and densest dataset of accelerometer and velocimeter records available. The objective is to estimate the average correlation length and assess its impact on the prediction accuracy of the Italian Shakemap compared to the global model (Loth and Baker, 2013–LB13) adopted in the default configuration of the program. We compute the spatial covariance structure using a geostatistical approach based on traditional variography applied to standardized residuals within the events of a reference ground motion model (ITA10). We observe spatial clusters of the correlation lengths and a wide variability over the Italian territory linked to the profound heterogeneity of the geological and geomorphological context. The obtained estimates are then implemented within the LB13 co-regionalization model in place of the default values while assuming the same cross-correlation coefficients among spectral parameters. Although our results are quite consistent with previous models calibrated for Italy, we find that the inclusion of the new correlation lengths in the Shakemap predictions, assessed through a leave-one-out cross-validation technique, results in a non-appreciable improvement over the global model, thus indicating that the adopted approach is not able to resolve the regional features and the corresponding spatial correlation with reference to individual scenarios. These findings may suggest the need to move towards nonergodic models in the Shakemap computing to better capture the spatial variability or to determine different co-regionalisation matrices more suitable for the regional applications.
    Description: Published
    Description: 1847–1873
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 9
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    Health impact of natural gas emission at Cava dei Selci residential zone (metropolitan city of Rome, Italy) (2022)
    Springer
    Details
    Publication Date: 2023-05-25
    Description: Natural gas hazard was assessed at Cava dei Selci, a residential neighbourhood of Marino (Rome) by a joint study of gas emissions and related health problems. Here a densely urbanized zone with 4000 residents surrounds a dangerous natural gas discharge where, along the years, dozens of animals were killed by the gas. Gas originates from Colli Albani volcano and consists mostly of CO2 with ~1 vol.% of H2S. In recent years, several gas-related accidents occurred in the urbanized zone (gas blowouts and road collapses). Some houses were evacuated because of hazardous indoor air gas concentration. Gas hazard was assessed by soil CO2 flux and concentration surveys and indoor and outdoor air CO2 and H2S concentration measurements. Open fields and house gardens release a high quantity of CO2 (32.23 tonnes*day-1). Inside most houses, CO2 air concentration exceeds 0.1 vol.%, the acceptable long-term exposure range. In several houses both CO2 and H2S exceed the IDLH level (Immediately Dangerous to Life and Health). An epidemiological cohort study was carried out on the residents of two Cava dei Selci zones with high (ZoneA) and medium (ZoneB) gas hazard exposure, using the rest of Marino as reference zone. We found excess mortality and Emergency Room Visits (ERV) related to high exposure to CO2 and H2S; in particular , an increased risk of mortality and ERV for diseases of central nervous system (HR 1.57, 95% CI 0.76-3.25 and HR 5.82, 95% CI 1.27-26.56 respectively) was found among men living in Zone A.
    Description: Published
    Description: 707–729
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Keywords: Cava dei Selci (Rome) · Gas hazard assessment ; Soil CO2 flux surveys ; Indoor concentration of CO2 and H2S ; Gas-related health problems ; Epidemiologic study on mortality and ERV ; 04.08. Volcanology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 10
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    Temporal declines in Wadden Sea phytoplankton cell volumes observed within and across species (2022)
    Wiley
    In:  EPIC3Limnology and Oceanography, Wiley, 67(2), pp. 468-481, ISSN: 0024-3590
    Details
    Publication Date: 2023-09-27
    Description: Cell size is a master trait in the functional ecology of phytoplankton correlating with numerous morphological, physiological, and life-cycle characteristics of species that constrain their nutrient use, growth, and edibility. In contrast to well-known spatial patterns in cell size at macroecological scales or temporal changes in experimental contexts, few data sets allow testing temporal changes in cell sizes within ecosystems. To analyze the temporal changes of intraspecific and community-wide cell size, we use the phytoplankton data derived from the Lower Saxony Wadden Sea monitoring program, which comprises sample- and species-specific measurements of cell volume from 1710 samples collected over 14 yr. We find significant reductions in both the cell volume of most species and the weighted mean cell size of communities. Mainly diatoms showed this decline, whereas the size of dinoflagellates seemed to be less responsive. The magnitude of the trend indicates that cell volumes are about 30% smaller now than a decade ago. This interannual trend is overlayed by seasonal cycles with smaller cells typically observed in summer. In the subset of samples including environmental conditions, small community cell size was strongly related to high temperatures and low total phosphorus concentration. We conclude that cell size captures ongoing changes in phytoplankton communities beyond the changes in species composition. In addition, based on the changes in species biovolumes revealed by our analysis, we warn that using standard cell size values in phytoplankton assessment will not only miss temporal changes in size, but also lead to systematic errors in biomass estimates over time.
    Repository Name: EPIC Alfred Wegener Institut
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  • 11
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    Drivers of global pre‐industrial patterns of species turnover in planktonic foraminifera (2022)
    Wiley
    In:  EPIC3Ecography, Wiley, 2022(1), ISSN: 0906-7590
    Details
    Publication Date: 2023-09-27
    Description: 〈jats:p〉Anthropogenic climate change is altering global biogeographical patterns. However, it remains difficult to quantify how bioregions are changing because pre‐industrial records of species distributions are rare. Marine microfossils, such as planktonic foraminifera, are preserved in seafloor sediments and allow the quantification of bioregions in the past. Using a recently compiled data set of pre‐industrial species composition of planktonic foraminifera in 3802 worldwide seafloor sediments, we employed multivariate and statistical model‐based approaches to study spatial turnover in order to 1) quantify planktonic foraminifera bioregions and 2) understand the environmental drivers of species turnover. Four latitudinally banded bioregions emerge from the global assemblage data. The polar and temperate bioregions are bi‐hemispheric, supporting the idea that planktonic foraminifera species are not limited by dispersal. The equatorial bioregion shows complex longitudinal patterns and overlaps in sea surface temperature (SST) range with the tropical bioregion. Compositional‐turnover models (Bayesian bootstrap generalised dissimilarity models) identify SST as the strongest driver of species turnover. The turnover rate is constant across most of the SST gradient, showing no SST threshold values with rapid shifts in species composition, but decelerates above 25°C, suggesting SST is less predictive of species composition in warmer waters. Other environmental predictors affect species turnover non‐linearly, and their importance differs across regions. In the Pacific ocean, net primary productivity below 500 mgC m〈jats:sup〉−2〈/jats:sup〉 day〈jats:sup〉−1〈/jats:sup〉 drives fast compositional change. Water depth values below 3000 m (which affect calcareous microfossil preservation) increasingly drive changes in species composition among death assemblages in the Pacific and Indian oceans. Together, our results suggest that the dynamics of planktonic foraminifera bioregions are expected to be highly responsive to climate change; however, at lower latitudes, environmental drivers other than SST may affect these dynamics.〈/jats:p〉
    Repository Name: EPIC Alfred Wegener Institut
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  • 12
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    Failures to disagree are essential for environmental science to effectively influence policy development (2022)
    Wiley
    In:  EPIC3Ecology Letters, Wiley, 25(5), pp. 1075-1093, ISSN: 1461-023X
    Details
    Publication Date: 2023-09-27
    Description: While environmental science, and ecology in particular, is working to provide better understanding to base sustainable decisions on, the way scientific understanding is developed can at times be detrimental to this cause. Locked-in debates are often unnecessarily polarised and can compromise any common goals of the opposing camps. The present paper is inspired by a resolved debate from an unrelated field of psychology where Nobel laureate David Kahneman and Garry Klein turned what seemed to be a locked-in debate into a constructive process for their fields. The present paper is also motivated by previous discourses regarding the role of thresholds in natural systems for management and governance, but its scope of analysis targets the scientific process within complex social-ecological systems in general. We identified four features of environmental science that appear to predispose for locked-in debates: (1) The strongly context-dependent behaviour of ecological systems. (2) The dominant role of single hypothesis testing. (3) The high prominence given to theory demonstration compared investigation. (4) The effect of urgent demands to inform and steer policy. This fertile ground is further cultivated by human psychological aspects as well as the structure of funding and publication systems.
    Repository Name: EPIC Alfred Wegener Institut
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  • 13
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    Low statistical power and overestimated anthropogenic impacts, exacerbated by publication bias, dominate field studies in global change biology (2022)
    Wiley
    In:  EPIC3Global Change Biology, Wiley, 28(3), pp. 969-989, ISSN: 1354-1013
    Details
    Publication Date: 2023-09-27
    Description: Field studies are essential to reliably quantify ecological responses to global change because they are exposed to realistic climate manipulations. Yet such studies are limited in replicates, resulting in less power and, therefore, potentially unreliable effect estimates. Furthermore, while manipulative field experiments are assumed to be more powerful than non-manipulative observations, it has rarely been scrutinized using extensive data. Here, using 3847 field experiments that were designed to estimate the effect of environmental stressors on ecosystems, we systematically quantified their statistical power and magnitude (Type M) and sign (Type S) errors. Our investigations focused upon the reliability of field experiments to assess the effect of stressors on both ecosystem's response magnitude and variability. When controlling for publication bias, single experiments were underpowered to detect response magnitude (median power: 18%–38% depending on effect sizes). Single experiments also had much lower power to detect response variability (6%–12% depending on effect sizes) than response magnitude. Such underpowered studies could exaggerate estimates of response magnitude by 2–3 times (Type M errors) and variability by 4–10 times. Type S errors were comparatively rare. These observations indicate that low power, coupled with publication bias, inflates the estimates of anthropogenic impacts. Importantly, we found that meta-analyses largely mitigated the issues of low power and exaggerated effect size estimates. Rather surprisingly, manipulative experiments and non-manipulative observations had very similar results in terms of their power, Type M and S errors. Therefore, the previous assumption about the superiority of manipulative experiments in terms of power is overstated. These results call for highly powered field studies to reliably inform theory building and policymaking, via more collaboration and team science, and large-scale ecosystem facilities. Future studies also require transparent reporting and open science practices to approach reproducible and reliable empirical work and evidence synthesis.
    Repository Name: EPIC Alfred Wegener Institut
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  • 14
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    Cell size as driver and sentinel of phytoplankton community structure and functioning (2022)
    Wiley
    In:  EPIC3Functional Ecology, Wiley, 36(2), pp. 276-293, ISSN: 0269-8463
    Details
    Publication Date: 2023-09-27
    Description: Body size is a decisive functional trait in many organisms, especially for phytoplankton, which span several orders of magnitude in cell volume. Therefore, the analysis of size as a functional trait driving species’ performance has received wide attention in aquatic ecology, amended in recent decades by studies documenting changes in phytoplankton size in response to abiotic or biotic factors in the environment. We performed a systematic literature review to provide an overarching, partially quantitative synthesis of cell size as a driver and sentinel of phytoplankton ecology. We found consistent and significant allometric relationships between cell sizes and the functional performance of phytoplankton species (cellular rates of carbon fixation, respiration and exudation as well as resource affinities, uptake and content). Size scaling became weaker, absent or even negative when addressing C- or volume-specific rates or growth. C-specific photosynthesis and population growth rate peaked at intermediate cell sizes around 100 µm3. Additionally, we found a rich literature on sizes changing in response to warming, nutrients and pollutants. Whereas small cells tended to dominate under oligotrophic and warm conditions, there are a few notable exceptions, which indicates that other environmental or biotic constraints alter this general trend. Grazing seems a likely explanation, which we reviewed to understand both how size affects edibility and how size structure changes in response to grazing. Cell size also predisposes the strength and outcome of competitive interactions between algal species. Finally, we address size in a community context, where size-abundance scaling describes community composition and thereby the biodiversity in phytoplankton assemblages. We conclude that (a) size is a highly predictive trait for phytoplankton metabolism at the cellular scale, with less strong and nonlinear implications for growth and specific metabolism and (b) size structure is a highly suitable sentinel of phytoplankton responses to changing environments. A free Plain Language Summary can be found within the Supporting Information of this article.
    Repository Name: EPIC Alfred Wegener Institut
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  • 15
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    The Underwater Vision Profiler 6: an imaging sensor of particle size spectra and plankton, for autonomous and cabled platforms (2022)
    Wiley
    In:  EPIC3Limnology and Oceanography Methods, Wiley, 20(2), pp. 115-129, ISSN: 1541-5856
    Details
    Publication Date: 2023-08-01
    Description: Autonomous and cabled platforms are revolutionizing our understanding of ocean systems by providing 4D monitoring of the water column, thus going beyond the reach of ship-based surveys and increasing the depth of remotely sensed observations. However, very few commercially available sensors for such platforms are capable of monitoring large particulate matter (100–2000 μm) and plankton despite their important roles in the biological carbon pump and as trophic links from phytoplankton to fish. Here, we provide details of a new, commercially available scientific camera-based particle counter, specifically designed to be deployed on autonomous and cabled platforms: the Underwater Vision Profiler 6 (UVP6). Indeed, the UVP6 camera-and-lighting and processing system, while small in size and requiring low power, provides data of quality comparable to that of previous much larger UVPs deployed from ships. We detail the UVP6 camera settings, its performance when acquiring data on aquatic particles and plankton, their quality control, analysis of its recordings, and streaming from in situ acquisition to users. In addition, we explain how the UVP6 has already been integrated into platforms such as BGC-Argo floats, gliders and long-term mooring systems (autonomous platforms). Finally, we use results from actual deployments to illustrate how UVP6 data can contribute to addressing longstanding questions in marine science, and also suggest new avenues that can be explored using UVP6-equipped autonomous platforms.
    Repository Name: EPIC Alfred Wegener Institut
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  • 16
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    Publisher Correction: Biodiversity, environmental drivers, and sustainability of the global deep-sea sponge microbiome (2022)
    Springer Nature
    In:  EPIC3Nature Communications, Springer Nature, 13(1), pp. 6546-6546, ISSN: 2041-1723
    Details
    Publication Date: 2023-07-25
    Description: The original version of the Description of Additional Supplementary Files associated with this Article contained errors in the legends of Supplementary Data 5–8 and omitted legends for the Source Data. The HTML has been updated to include a corrected version of the Description of Additional Supplementary Files; the original incorrect version of this file can be found as Supplementary Information associated with this Correction.
    Repository Name: EPIC Alfred Wegener Institut
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  • 17
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    Front Cover: Transcriptome–proteome compendium of the Antarctic krill (Euphausia superba): Metabolic potential and repertoire of hydrolytic enzymes (2022)
    Wiley
    In:  EPIC3Proteomics, Wiley, 22(18), pp. 2270121-2270121, ISSN: 1615-9853
    Details
    Publication Date: 2023-05-10
    Description: The Antarctic krill (Euphausia superba Dana) is a keystone species in the Southern Ocean that uses an arsenal of hydrolases for biomacromolecule decomposition to effectively digest its omnivorous diet. The present study builds on a hybrid-assembled transcriptome (13,671 ORFs) combined with comprehensive proteome profiling. The analysis of individual krill compartments allowed detection of significantly more different proteins compared to that of the entire animal (1464 vs. 294 proteins). The nearby krill sampling stations in the Bransfield Strait (Antarctic Peninsula) yielded rather uniform proteome datasets. Proteins related to energy production and lipid degradation were particularly abundant in the abdomen, agreeing with the high energy demand of muscle tissue. A total of 378 different biomacromolecule hydrolysing enzymes were detected, including 250 proteases, 99 CAZymes, 14 nucleases and 15 lipases. The large repertoire in proteases is in accord with the protein-rich diet affiliatedwith E. superba’s omnivorous lifestyle and complex biology. The richness in chitin-degrading enzymes allows not only digestion of zooplankton diet, but also the utilisation of the discharged exoskeleton after moulting.
    Repository Name: EPIC Alfred Wegener Institut
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  • 18
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    Environmentally induced functional shifts in phytoplankton and their potential consequences for ecosystem functioning (2022)
    Wiley
    In:  EPIC3Global Change Biology, Wiley, 28(8), pp. 2804-2819, ISSN: 1354-1013
    Details
    Publication Date: 2023-06-21
    Description: Phytoplanktonic organisms are particularly sensitive to environmental change, and, as they represent a direct link between abiotic and biotic compartments within the marine food web, changes in the functional structure of phytoplankton communities can result in profound impacts on ecosystem functioning. Using a trait-based approach, we examined changes in the functional structure of the southern North Sea phytoplankton over the past five decades in relation to environmental conditions. We identified a shift in functional structure between 1998 and 2004 which coincides with a pronounced increase in diatom and decrease in dinoflagellate abundances, and we provide a mechanistic explanation for this taxonomic change. Early in the 2000s, the phytoplankton functional structure shifted from slow growing, autumn blooming, mixotrophic organisms, towards earlier blooming and faster-growing microalgae. Warming and decreasing dissolved phosphorus concentrations were linked to this rapid reorganization of the functional structure. We identified a potential link between this shift and dissolved nutrient concentrations, and we hypothesise that organisms blooming early and displaying high growth rates efficiently take up nutrients which then are no longer available to late bloomers. Moreover, we identified that the above-mentioned functional change may have bottom-up consequences, through a food quality-driven negative influence on copepod abundances. Overall, our study highlights that, by altering the phytoplankton functional composition, global and regional changes may have profound long-term impacts on coastal ecosystems, impacting both food-web structure and biogeochemical cycles.
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  • 19
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    MOSAiC-ACA and AFLUX - Arctic airborne campaigns characterizing the exit area of MOSAiC (2022)
    Springer Nature
    In:  EPIC3Scientific data, Springer Nature, 9, pp. 1-19, ISSN: 2052-4463
    Details
    Publication Date: 2023-01-25
    Description: Two airborne field campaigns focusing on observations of Arctic mixed-phase clouds and boundary layer processes and their role with respect to Arctic amplification have been carried out in spring 2019 and late summer 2020 over the Fram Strait northwest of Svalbard. The latter campaign was closely connected to the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition. Comprehensive datasets of the cloudy Arctic atmosphere have been collected by operating remote sensing instruments, in-situ probes, instruments for the measurement of turbulent fluxes of energy and momentum, and dropsondes on board the AWI research aircraft Polar 5. In total, 24 flights with 111 flight hours have been performed over open ocean, the marginal sea ice zone, and sea ice. The datasets follow documented methods and quality assurance and are suited for studies on Arctic mixedphase clouds and their transformation processes, for studies with a focus on Arctic boundary layer processes, and for satellite validation applications. All datasets are freely available via the world data center PANGAEA.
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  • 20
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    Method optimization of the simultaneous detection of B12 congeners leading to the detection of a novel isomer of hydroxycobalamin in seawater (2022)
    Wiley
    In:  EPIC3Rapid Communications in Mass Spectrometry, Wiley, 36(23), pp. e9401-e9401, ISSN: 0951-4198
    Details
    Publication Date: 2023-01-17
    Description: Rationale More than half of surveyed microalgae and over 90% of harmful algae have an obligate requirement for vitamin B12, but methods for directly measuring dissolved B12 in seawater are scarce due to low concentrations and rapid light-induced hydrolysis. Methods We present a method to detect and measure the four main congeners of vitamin B12 dissolved in seawater. The method includes solid-phase extraction, separation by ultrahigh-performance liquid chromatography and detection by triple-quadrupole tandem mass spectrometry utilizing an electrospray ion source. This method was applied to coastal field samples collected in the German Bay, Baltic Sea and the Danish Limfjord system. Results The total dissolved B12 pool ranged between 0.5 and 2.1 pM. Under ambient conditions methyl-B12 and adenosyl-B12 were nearly fully hydrolyzed to hydroxy-B12 in less than 1 h. Hydroxy-B12 and a novel, corresponding isomer were the main forms of B12 found at all field sites. This isomer eluted well after the OH-B12 peak and was also detected in commercially available OH-B12. Both compounds showed very high similarity in their collision-induced dissociation spectra. Conclusions The high instability of the biologically active forms of Me-B12 and Ado-B12 towards hydrolysis was shown, highlighting the importance of reducing the duration of the extraction protocol. In addition, the vitamin B12 pool in the study area was mostly comprised of a previously undescribed isomer of OH-B12. Further studies into the structure of this isomer and its bioavailability are needed.
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  • 21
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    Method optimization of the simultaneous detection of B12 congeners leading to the detection of a novel isomer of hydroxycobalamin in seawater (2022)
    Wiley
    In:  EPIC3Rapid Communications in Mass Spectrometry, Wiley, 36(23), pp. e9401-e9401, ISSN: 0951-4198
    Details
    Publication Date: 2023-01-17
    Description: Rationale More than half of surveyed microalgae and over 90% of harmful algae have an obligate requirement for vitamin B12, but methods for directly measuring dissolved B12 in seawater are scarce due to low concentrations and rapid light-induced hydrolysis. Methods We present a method to detect and measure the four main congeners of vitamin B12 dissolved in seawater. The method includes solid-phase extraction, separation by ultrahigh-performance liquid chromatography and detection by triple-quadrupole tandem mass spectrometry utilizing an electrospray ion source. This method was applied to coastal field samples collected in the German Bay, Baltic Sea and the Danish Limfjord system. Results The total dissolved B12 pool ranged between 0.5 and 2.1 pM. Under ambient conditions methyl-B12 and adenosyl-B12 were nearly fully hydrolyzed to hydroxy-B12 in less than 1 h. Hydroxy-B12 and a novel, corresponding isomer were the main forms of B12 found at all field sites. This isomer eluted well after the OH-B12 peak and was also detected in commercially available OH-B12. Both compounds showed very high similarity in their collision-induced dissociation spectra. Conclusions The high instability of the biologically active forms of Me-B12 and Ado-B12 towards hydrolysis was shown, highlighting the importance of reducing the duration of the extraction protocol. In addition, the vitamin B12 pool in the study area was mostly comprised of a previously undescribed isomer of OH-B12. Further studies into the structure of this isomer and its bioavailability are needed.
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  • 22
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    Experiential learning, practices, and space for change: The institutional preconfiguration of community participation in flood risk reduction (2022)
    Wiley
    In:  EPIC3Journal of Flood Risk Management, Wiley, ISSN: 1753-318X
    Details
    Publication Date: 2024-02-07
    Description: Responding to societal challenges requires an understanding of how institutional change happens or does not happen. In the context of flood risk reduction, a central impediment of transformational change is a struggle over how public participation is understood and practiced. Risk institutions are often portrayed as resistant to change, which overlooks the individuals within institutions who struggle to implement innovative power-sharing approaches/arrangements. Using two rounds of qualitative interviews spread over 5 years, this research identifies factions within the risk sector—those who view participation as awareness raising and those who are struggling to make participation part of a wider commitment to power-sharing: a group that, for the purpose of this analysis, we call “mavericks.” Through focus on how mavericks struggle for change, this analysis uncovers tensions that arise as individuals attempt to alter prevailing knowledge-practices. The findings highlight the importance of experiential learning, active listening, and the alteration of space. By applying a relational conceptualisation, we explore how mavericks advocate for relationship building, which alters spaces of public participation and, in that way, lays the foundation for transformational social innovations. The conclusions offer flood risk researchers perspective on the institutional struggles that preconfigure how frontrunner projects are or are not able to facilitate the community participation needed to successfully implement societal transformations.
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  • 23
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    Availability of vitamin B12 and its lower ligand intermediate α-ribazole impact prokaryotic and protist communities in oceanic systems (2022)
    Springer Nature
    In:  EPIC3The ISME Journal: Multidisciplinary Journal of Microbial Ecology, Springer Nature, 16(8), pp. 2002-2014, ISSN: 1751-7362
    Details
    Publication Date: 2023-11-14
    Description: Genome analyses predict that the cofactor cobalamin (vitamin B12, called B12 herein) is produced by only one-third of all prokaryotes but almost all encode at least one B12-dependent enzyme, in most cases methionine synthase. This implies that the majority of prokaryotes relies on exogenous B12 supply and interacts with producers. B12 consists of a corrin ring centred around a cobalt ion and the lower ligand 5’6-dimethylbenzimidazole (DMB). It has never been tested whether availability of this pivotal cofactor, DMB or its intermediate α-ribazole affect growth and composition of prokaryotic microbial communities. Here we show that in the subtropical, equatorial and polar frontal Pacific Ocean supply of B12 and α-ribazole enhances heterotrophic prokaryotic production and alters the composition of prokaryotic and heterotrophic protist communities. In the polar frontal Pacific, the SAR11 clade and Oceanospirillales increased their relative abundances upon B12 supply. In the subtropical Pacific, Oceanospirillales increased their relative abundance upon B12 supply as well but also downregulated the transcription of the btuB gene, encoding the outer membrane permease for B12. Surprisingly, Prochlorococcus, known to produce pseudo-B12 and not B12, exhibited significant upregulation of genes encoding key proteins of photosystem I + II, carbon fixation and nitrate reduction upon B12 supply in the subtropical Pacific. These findings show that availability of B12 and α-ribazole affect growth and composition of prokaryotic and protist communities in oceanic systems thus revealing far-reaching consequences of methionine biosynthesis and other B12-dependent enzymatic reactions on a community level.
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  • 24
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    The overlooked role of a biotin precursor for marine bacteria - desthiobiotin as an escape route for biotin auxotrophy (2022)
    Springer Nature
    In:  EPIC3The ISME Journal: Multidisciplinary Journal of Microbial Ecology, Springer Nature, 16(11), pp. 2599-2609, ISSN: 1751-7362
    Details
    Publication Date: 2023-11-14
    Description: 〈jats:title〉Abstract〈/jats:title〉〈jats:p〉Biotin (vitamin B〈jats:sub〉7〈/jats:sub〉) is involved in a wide range of essential biochemical reactions and a crucial micronutrient that is vital for many pro- and eukaryotic organisms. The few biotin measurements in the world’s oceans show that availability is subject to strong fluctuations. Numerous marine microorganisms exhibit biotin auxotrophy and therefore rely on supply by other organisms. Desthiobiotin is the primary precursor of biotin and has recently been detected at concentrations similar to biotin in seawater. The last enzymatic reaction in the biotin biosynthetic pathway converts desthiobiotin to biotin via the biotin synthase (BioB). The role of desthiobiotin as a precursor of biotin synthesis in microbial systems, however, is largely unknown. Here we demonstrate experimentally that bacteria can overcome biotin auxotrophy if they retain the 〈jats:italic〉bioB〈/jats:italic〉 gene and desthiobiotin is available. A genomic search of 1068 bacteria predicts that the biotin biosynthetic potential varies greatly among different phylogenetic groups and that 20% encode solely 〈jats:italic〉bioB〈/jats:italic〉 and thus can potentially overcome biotin auxotrophy. Many 〈jats:italic〉Actino〈/jats:italic〉- and 〈jats:italic〉Alphaproteobacteria〈/jats:italic〉 cannot synthesize biotin de novo, but some possess solely 〈jats:italic〉bioB〈/jats:italic〉, whereas the vast majority of 〈jats:italic〉Gammaproteobacteria〈/jats:italic〉 and 〈jats:italic〉Flavobacteriia〈/jats:italic〉 exhibit the last four crucial biotin synthesis genes. We detected high intra- and extracellular concentrations of the precursor relative to biotin in the prototrophic bacterium, 〈jats:italic〉Vibrio campbellii〈/jats:italic〉, with extracellular desthiobiotin reaching up to 1.09 ± 0.15*10〈jats:sup〉6〈/jats:sup〉 molecules per cell during exponential growth. Our results provide evidence for the ecological role of desthiobiotin as an escape route to overcome biotin auxotrophy for bacteria in the ocean and presumably in other ecosystems.〈/jats:p〉
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  • 25
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    Selection, drift and community interactions shape microbial biogeographic patterns in the Pacific Ocean (2022)
    Springer Nature
    In:  EPIC3The ISME Journal: Multidisciplinary Journal of Microbial Ecology, Springer Nature, 16(12), pp. 2653-2665, ISSN: 1751-7362
    Details
    Publication Date: 2023-11-14
    Description: Despite accumulating data on microbial biogeographic patterns in terrestrial and aquatic environments, we still lack a comprehensive understanding of how these patterns establish, in particular in ocean basins. Here we show the relative significance of the ecological mechanisms selection, dispersal and drift for shaping the composition of microbial communities in the Pacific Ocean over a transect of 12,400 km between subantarctic and subarctic regions. In the epipelagic, homogeneous selection contributes 50–60% and drift least to the three mechanism for the assembly of prokaryotic communities whereas in the upper mesopelagic, drift is relatively most important for the particle-associated subcommunities. Temperature is important for the relative significance of homogeneous selection and dispersal limitation for community assembly. The relative significance of both mechanisms was inverted with increasing temperature difference along the transect. For eukaryotes 〉8 µm, homogeneous selection is also the most important mechanisms at two epipelagic depths whereas at all other depths drift is predominant. As species interactions are essential for structuring microbial communities we further analyzed co-occurrence-based community metrics to assess biogeographic patterns over the transect. These interaction-adjusted indices explained much better variations in microbial community composition as a function of abiotic and biotic variables than compositional or phylogenetic distance measures like Bray–Curtis or UniFrac. Our analyses are important to better understand assembly processes of microbial communities in the upper layers of the largest ocean and how they adapt to effectively perform in global biogeochemical processes. Similar principles presumably act upon microbial community assembly in other ocean basins.
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  • 26
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    Availability of vitamin B12 and its lower ligand intermediate α-ribazole impact prokaryotic and protist communities in oceanic systems (2022)
    Springer Nature
    In:  EPIC3The ISME Journal: Multidisciplinary Journal of Microbial Ecology, Springer Nature, 16(8), pp. 2002-2014, ISSN: 1751-7362
    Details
    Publication Date: 2023-11-14
    Description: Genome analyses predict that the cofactor cobalamin (vitamin B12, called B12 herein) is produced by only one-third of all prokaryotes but almost all encode at least one B12-dependent enzyme, in most cases methionine synthase. This implies that the majority of prokaryotes relies on exogenous B12 supply and interacts with producers. B12 consists of a corrin ring centred around a cobalt ion and the lower ligand 5’6-dimethylbenzimidazole (DMB). It has never been tested whether availability of this pivotal cofactor, DMB or its intermediate α-ribazole affect growth and composition of prokaryotic microbial communities. Here we show that in the subtropical, equatorial and polar frontal Pacific Ocean supply of B12 and α-ribazole enhances heterotrophic prokaryotic production and alters the composition of prokaryotic and heterotrophic protist communities. In the polar frontal Pacific, the SAR11 clade and Oceanospirillales increased their relative abundances upon B12 supply. In the subtropical Pacific, Oceanospirillales increased their relative abundance upon B12 supply as well but also downregulated the transcription of the btuB gene, encoding the outer membrane permease for B12. Surprisingly, Prochlorococcus, known to produce pseudo-B12 and not B12, exhibited significant upregulation of genes encoding key proteins of photosystem I + II, carbon fixation and nitrate reduction upon B12 supply in the subtropical Pacific. These findings show that availability of B12 and α-ribazole affect growth and composition of prokaryotic and protist communities in oceanic systems thus revealing far-reaching consequences of methionine biosynthesis and other B12-dependent enzymatic reactions on a community level.
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  • 27
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    Significance of gene variants for the functional biogeography of the near-surface Atlantic Ocean microbiome (2022)
    Springer Nature
    In:  EPIC3Nature Communications, Springer Nature, 13(1), pp. 456-456, ISSN: 2041-1723
    Details
    Publication Date: 2023-11-14
    Description: Microbial communities are major drivers of global elemental cycles in the oceans due to their high abundance and enormous taxonomic and functional diversity. Recent studies assessed microbial taxonomic and functional biogeography in global oceans but microbial functional biogeography remains poorly studied. Here we show that in the near-surface Atlantic and Southern Ocean between 62°S and 47°N microbial communities exhibit distinct taxonomic and functional adaptations to regional environmental conditions. Richness and diversity showed maxima around 40° latitude and intermediate temperatures, especially in functional genes (KEGG-orthologues, KOs) and gene profiles. A cluster analysis yielded three clusters of KOs but five clusters of genes differing in the abundance of genes involved in nutrient and energy acquisition. Gene profiles showed much higher distance-decay rates than KO and taxonomic profiles. Biotic factors were identified as highly influential in explaining the observed patterns in the functional profiles, whereas temperature and biogeographic province mainly explained the observed taxonomic patterns. Our results thus indicate fine-tuned genetic adaptions of microbial communities to regional biotic and environmental conditions in the Atlantic and Southern Ocean.
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  • 28
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    Elemental and biochemical nutrient limitation of zooplankton: A meta‐analysis (2022)
    Wiley
    In:  EPIC3Ecology Letters, Wiley, 25(12), pp. 2776-2792, ISSN: 1461-023X
    Details
    Publication Date: 2023-09-22
    Description: Primary consumers in aquatic ecosystems are frequently limited by the quality of their food, often expressed as phytoplankton elemental and biochemical composition. However, the effects of these food quality indicators vary across studies, and we lack an integrated understanding of how elemental (e.g. nitrogen, phosphorus) and biochemical (e.g. fatty acid, sterol) limitations interactively influence aquatic food webs. Here, we present the results of a meta-analysis using 〉100 experimental studies, confirming that limitation by N, P, fatty acids, and sterols all have significant negative effects on zooplankton performance. However, effects varied by grazer response (growth vs. reproduction), specific manipulation, and across taxa. While P limitation had greater effects on zooplankton growth than fatty acids overall, P and fatty acid limitation had equal effects on reproduction. Furthermore, we show that: nutrient co-limitation in zooplankton is strong; effects of essential fatty acid limitation depend on P availability; indirect effects induced by P limitation exceed direct effects of mineral P limitation; and effects of nutrient amendments using laboratory phytoplankton isolates exceed those using natural field communities. Our meta-analysis reconciles contrasting views about the role of various food quality indicators, and their interactions, for zooplankton performance, and provides a mechanistic understanding of trophic transfer in aquatic environments.
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  • 29
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    Plankton response to global warming is characterized by non-uniform shifts in assemblage composition since the last ice age (2022)
    Springer Nature
    In:  EPIC3Nature Ecology & Evolution, Springer Nature, 6(12), pp. 1871-1880, ISSN: 2397-334X
    Details
    Publication Date: 2023-09-22
    Description: Biodiversity is expected to change in response to future global warming. However, it is difficult to predict how species will track the ongoing climate change. Here we use the fossil record of planktonic foraminifera to assess how biodiversity responded to climate change with a magnitude comparable to future anthropogenic warming. We compiled time series of planktonic foraminifera assemblages, covering the time from the last ice age across the deglaciation to the current warm period. Planktonic foraminifera assemblages shifted immediately when temperature began to rise at the end of the last ice age and continued to change until approximately 5,000 years ago, even though global temperature remained relatively stable during the last 11,000 years. The biotic response was largest in the mid latitudes and dominated by range expansion, which resulted in the emergence of new assemblages without analogues in the glacial ocean. Our results indicate that the plankton response to global warming was spatially heterogeneous and did not track temperature change uniformly over the past 24,000 years. Climate change led to the establishment of new assemblages and possibly new ecological interactions, which suggests that current anthropogenic warming may lead to new, different plankton community composition.
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  • 30
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    Measuring stability in ecological systems without static equilibria (2022)
    Wiley
    In:  EPIC3Ecosphere, Wiley, 13(12), ISSN: 2150-8925
    Details
    Publication Date: 2023-09-22
    Description: Ecological stability refers to a range of concepts used to quantify how species and environments change over time and in response to disturbances. Most empirically tractable ecological stability metrics assume that systems have simple dynamics and static equilibria. However, ecological systems are typically complex and often lack static equilibria (e.g., predator–prey oscillations, transient dynamics, chaos). Failing to account for these factors can lead to biased estimates of stability, in particular, by conflating effects of observation error, process noise, and underlying deterministic dynamics. To distinguish among these processes, we combine three existing approaches: state space models; delay embedding methods; and particle filtering. Jointly, these provide something akin to a deterministically “detrended” version of the coefficient of variation, separately tracking variability due to deterministic dynamics versus stochastic perturbations. Moreover, these variability estimates can be used to forecast dynamics, classify underlying sources of stochastic dynamics, and estimate the “exit time” before a state change takes place (e.g., local extinction events). Importantly, the time-delay embedding methods that we employ make very few assumptions about the functions governing deterministic dynamics, which facilitates applications in systems with limited data and a priori biological knowledge. To demonstrate how complex dynamics without static equilibria can bias ecological stability estimates, we analyze simulated time series of abundance dynamics in a system with time-varying carrying capacity and empirically observed abundance dynamics of the green algae Chlamydomonas terricola grown in a diverse microcosm mixture under variable temperature conditions. We show that stability estimates based on raw observations greatly overestimate temporal variability and fail to accurately forecast time to extinction. In contrast, joint application of state space modeling, delay embedding, and particle filters were able to: (1) correctly quantify the contributions of deterministic versus stochastic variability; (2) successfully estimate “true” abundance dynamics; and (3) correctly forecast time to extinction. Our results therefore demonstrate the importance of accounting for effects of complex, nonstatic dynamics in studies of ecological stability and provide an empirically tractable and flexible toolkit for conducting these measurements.
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  • 31
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    Coastal ecosystem engineers and their impact on sediment dynamics: Eelgrass–bivalve interactions under wave exposure (2022)
    Wiley
    In:  EPIC3Limnology and Oceanography, Wiley, 67(3), pp. 621-633, ISSN: 0024-3590
    Details
    Publication Date: 2023-09-18
    Description: Habitat forming ecosystem engineers play critical roles in structuring coastal seascapes. Many ecosystem engineers, such as seagrasses and epifaunal bivalves, are known to have positive effects on sediment stability and increase coastal protection and ecosystem resilience. Others, such as bioturbating infaunal bivalves, may instead destabilize sediment. However, despite the common co-occurrence of seagrasses and bivalves in coastal seascapes, little is known of their combined effects on sediment dynamics. Here, we used wave flumes to compare sediment dynamics in monospecific and multispecific treatments of eelgrass, Zostera marina, and associated bivalves (infaunal Limecola balthica, infaunal Cerastoderma edule, epifaunal Magellana gigas) under a range of wave exposures. Eelgrass reduced bedload erosion rates by 25–50%, with digital elevation models indicating that eelgrass affected the sediment micro-bathymetry by decreasing surface roughness and ripple sizes. Effects of bivalves on sediment mobilization were species-specific; L. balthica reduced erosion by 25%, C. edule increased erosion by 40%, while M. gigas had little effect. Importantly, eelgrass modified the impacts of bivalves: the destabilizing effects of C. edule vanished in the presence of eelgrass, while we found positive additive effects of eelgrass and L. balthica on sediment stabilization and potential for mutual anchoring. Such interspecific interactions are likely relevant for habitat patch emergence and resilience to extreme wave conditions. In light of future climate scenarios where increasing storm frequency and wave exposure threaten coastal ecosystems, our results add a mechanistic understanding of sediment dynamics and interactions between ecosystem engineers, with relevance for management and conservation.
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  • 32
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    Quantifying the portfolio of larval responses to salinity and temperature in a coastal-marine invertebrate: a cross population study along the European coast (2022)
    Springer
    In:  EPIC3Marine Biology, Springer, 169(6), ISSN: 0025-3162
    Details
    Publication Date: 2024-01-01
    Description: portfolio available for a species to cope with and mitigate effects of climate change. Here, we quantified variation in larval survival and physiological rates of Carcinus maenas among populations occurring in distant or contrasting habitats (Cádiz: Spain, Helgoland: North Sea, Kerteminde: Baltic Sea). During the reproductive season, we reared larvae of these populations, in the laboratory, under a combination of several temperatures (15–24 °C) and salinities (25 and 32.5 PSU). In survival, all three populations showed a mitigating effect of high temperatures at lower salinity, with the strongest pattern for Helgoland. However, Cádiz and Kerteminde differed from Helgoland in that a strong thermal mitigation did not occur for growth and developmental rates. For all populations, oxygen consumption rates were driven only by temperature; hence, these could not explain the growth rate depression found at lower salinity. Larvae from Cádiz, reared in seawater, showed increased survival at the highest temperature, which differs from Helgoland (no clear survival pattern), and especially Kerteminde (decreased survival at high temperature). These responses from the Cádiz population correspond with the larval and parental habitat (i.e., high salinity and temperature) and may reflect local adaptation. Overall, along the European coast, C. maenas larvae showed a diversity of responses, which may enable specific populations to tolerate warming and subsidise more vulnerable populations. In such case, C. maenas would be able to cope with climate change through a spatial portfolio effect.
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  • 33
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    Thermohydrological Impact of Forest Disturbances on Ecosystem‐Protected Permafrost (2022)
    Wiley
    In:  EPIC3Journal of Geophysical Research: Biogeosciences, Wiley, 127(5)
    Details
    Publication Date: 2024-04-23
    Description: Boreal forests cover over half of the global permafrost area and protect underlying permafrost. Boreal forest development, therefore, has an impact on permafrost evolution, especially under a warming climate. Forest disturbances and changing climate conditions cause vegetation shifts and potentially destabilize the carbon stored within the vegetation and permafrost. Disturbed permafrost-forest ecosystems can develop into a dry or swampy bush- or grasslands, shift toward broadleaf- or evergreen needleleaf-dominated forests, or recover to the pre-disturbance state. An increase in the number and intensity of fires, as well as intensified logging activities, could lead to a partial or complete ecosystem and permafrost degradation. We study the impact of forest disturbances (logging, surface, and canopy fires) on the thermal and hydrological permafrost conditions and ecosystem resilience. We use a dynamic multilayer canopy-permafrost model to simulate different scenarios at a study site in eastern Siberia. We implement expected mortality, defoliation, and ground surface changes and analyze the interplay between forest recovery and permafrost. We find that forest loss induces soil drying of up to 44%, leading to lower active layer thicknesses and abrupt or steady decline of a larch forest, depending on disturbance intensity. Only after surface fires, the most common disturbances, inducing low mortality rates, forests can recover and overpass pre-disturbance leaf area index values. We find that the trajectory of larch forests after surface fires is dependent on the precipitation conditions in the years after the disturbance. Dryer years can drastically change the direction of the larch forest development within the studied period.
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  • 34
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    A ~700 years perspective on the 21st century drying in the eastern part of Europe based on δ18O in tree ring cellulose (2022)
    Springer Nature
    In:  EPIC3Communications Earth & Environment, Springer Nature, 3(1), pp. 277-277, ISSN: 2662-4435
    Details
    Publication Date: 2024-04-22
    Description: Numerical simulations indicate that extreme climate events (e.g., droughts, floods, heat waves) will increase in a warming world, putting enormous pressure on society and political decision-makers. To provide a long-term perspective on the variability of these extreme events, here we use a ~700 years tree-ring oxygen isotope chronology from Eastern Europe, in combination with paleo-reanalysis data, to show that the summer drying over Eastern Europe observed over the last ~150 years is to the best of our knowledge unprecedented over the last 700 years. This drying is driven by a change in the pressure patterns over Europe, characterized by a shift from zonal to a wavier flow around 1850CE, leading to extreme summer droughts and aridification. To our knowledge, this is the first and longest reconstruction of drought variability, based on stable oxygen isotopes in the tree-ring cellulose, for Eastern Europe, helping to fill a gap in the spatial coverage of paleoclimate reconstructions.
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    In contrast to diatoms, cryptophytes are susceptible to iron limitation, but not to ocean acidification (2022)
    Wiley
    In:  EPIC3Physiologia Plantarum, Wiley, 174(1), ISSN: 0031-9317
    Details
    Publication Date: 2024-05-07
    Description: Previous field studies in the Southern Ocean (SO) indicated an increased occurrence and dominance of cryptophytes over diatoms due to climate change. To gain a better mechanistic understanding of how the two ecologically important SO phytoplankton groups cope with ocean acidification (OA) and iron (Fe) availability, we chose two common representatives of Antarctic waters, the cryptophyte Geminigera cryophila and the diatom Pseudo-nitzschia subcurvata. Both species were grown at 2°C under different pCO2 (400 vs. 900 μatm) and Fe (0.6 vs. 1.2 nM) conditions. For P. subcurvata, an additional high pCO2 level was applied (1400 μatm). At ambient pCO2 under low Fe supply, growth of G. cryophila almost stopped while it remained unaffected in P. subcurvata. Under high Fe conditions, OA was not beneficial for P. subcurvata, but stimulated growth and carbon production of G. cryophila. Under low Fe supply, P. subcurvata coped much better with OA than the cryptophyte, but invested more energy into photoacclimation. Our study reveals that Fe limitation was detrimental for the growth of G. cryophila and suppressed the positive OA effect. The diatom was efficient in coping with low Fe, but was stressed by OA while both factors together strongly impacted its growth. The distinct physiological response of both species to OA and Fe limitation explains their occurrence in the field. Based on our results, Fe availability is an important modulator of OA effects on SO phytoplankton, with different implications on the occurrence of cryptophytes and diatoms in the future.
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    Author Correction: Annual cycle observations of aerosols capable of ice formation in central Arctic clouds (2022)
    Springer Nature
    In:  EPIC3Nature Communications, Springer Nature, 13(1), pp. 6010-6010, ISSN: 2041-1723
    Details
    Publication Date: 2024-05-08
    Description: The original version of this Article contained an error in Fig. 4, in which the y-axis should read “INPs (L−1 of air)” instead of “INPs x 10−3 (L−1 of air)”. This has been corrected in both the PDF and HTML versions of the Article.
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    Tidal dissipation from free drift sea ice in the Barents Sea assessed using GNSS beacon observations (2022)
    Springer Nature
    In:  EPIC3Ocean Dynamics, Springer Nature, 72(8), pp. 577-597, ISSN: 1616-7341
    Details
    Publication Date: 2024-05-08
    Description: One of the major challenges facing global hydrodynamic tidal models is the modelling of the interaction between sea ice and tides in high-latitude waters. Recent studies have shown strong seasonal correlation between sea ice and tides. Hence, it is important to accurately model the effect of sea ice in a tidal model. Presence of sea ice leads to a frictional dissipation of tides. Most models either completely ignore sea ice or partly include it by assuming a fixed sea ice cover (landfast ice). However, sea ice can also be drifting and the nature of dissipation between drifting sea ice and tides is partly unknown. We assess the dissipation of tides due to free drift sea ice. In the absence of wind, this is negligible in the deeper and open ocean. For the shallow water regions, however, this dissipation is unknown. Here, we evaluate this dissipation for the Spitzbergen Shelf region using a beacon dataset showing strong free drift subdaily sea ice oscillations and a physics based point ice model. Two analyses were done which compared the model and observed motion. The analyses showed that for winds speeds below 8m/s and with low subdaily signals, the subdaily free drift sea ice motion is strongly connected to the tides and that the frictional dissipation is low. In the context of global tide and storm surge models, the dissipation from free drift sea ice on tides should be evaluated based on the region (deep ocean or shallow water) and existing wind conditions. In the presence of strong winds the dissipation between free drift sea ice and air can be significant on a subdaily scale even if there are no subdaily signals in the wind itself.
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  • 38
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    Harnessing the microbiome to prevent global biodiversity loss (2022)
    Springer Nature
    In:  EPIC3Nature Microbiology, Springer Nature, 7(11), pp. 1726-1735, ISSN: 2058-5276
    Details
    Publication Date: 2024-01-02
    Description: Global biodiversity loss and mass extinction of species are two of the most critical environmental issues the world is currently facing, resulting in the disruption of various ecosystems central to environmental functions and human health. Microbiome-targeted interventions, such as probiotics and microbiome transplants, are emerging as potential options to reverse deterioration of biodiversity and increase the resilience of wildlife and ecosystems. However, the implementation of these interventions is urgently needed. We summarize the current concepts, bottlenecks and ethical aspects encompassing the careful and responsible management of ecosystem resources using the microbiome (termed microbiome stewardship) to rehabilitate organisms and ecosystem functions. We propose a real-world application framework to guide environmental and wildlife probiotic applications. This framework details steps that must be taken in the upscaling process while weighing risks against the high toll of inaction. In doing so, we draw parallels with other aspects of contemporary science moving swiftly in the face of urgent global challenges.
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  • 39
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    Testing the use of the silica deposition fluorescent probe PDMPO to estimate in situ growth rates of diatoms (2022)
    Wiley
    In:  EPIC3Limnology and Oceanography Methods, Wiley, 20(9), pp. 568-580, ISSN: 1541-5856
    Details
    Publication Date: 2024-04-03
    Description: The fluorophore [2-(4-pyridyl)-5{[4-dimethylaminoethyl-aminocarbamoyl-methoxy]phenyl}oxazole], in short PDMPO, is incorporated in newly polymerized silica in diatom frustules and thereby provides a tool to estimate Si uptake, study diatom cell cycles but also determine mortality-independent abundance-based species specific-growth rates in cultures and natural assemblages. In this study, the theoretical framework and applicability of the PDMPO staining technique to estimate diatom species specific-growth rates were investigated. Three common polar diatom species, Pseudo-nitzschia subcurvata, Chaetoceros simplex, and Thalassiosira sp., chosen in order to cover a broad range of species specific frustule and life-cycle characteristics, were incubated over 24 h in control (no PDMPO) and with 0.125 and 0.6 μM PDMPO addition, respectively. Results indicate that specific-growth rates of the species tested were not affected in both treatments with PDMPO addition. The specific-growth rate estimates based on the PDMPO staining patterns (μPDMPO) were comparable and more robust than growth rates estimated from the changes in cell concentrations (μcc). This technique also allowed to investigate and highlight the importance of the illumination cycle (light and dark phases) on cell division in diatoms.
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  • 40
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    Microbial metabolites in the marine carbon cycle (2022)
    Springer Nature
    In:  EPIC3Nature Microbiology, Springer Nature, 7(4), pp. 508-523, ISSN: 2058-5276
    Details
    Publication Date: 2024-04-03
    Description: One-quarter of photosynthesis-derived carbon on Earth rapidly cycles through a set of short-lived seawater metabolites that are generated from the activities of marine phytoplankton, bacteria, grazers and viruses. Here we discuss the sources of microbial metabolites in the surface ocean, their roles in ecology and biogeochemistry, and approaches that can be used to analyse them from chemistry, biology, modelling and data science. Although microbial-derived metabolites account for only a minor fraction of the total reservoir of marine dissolved organic carbon, their flux and fate underpins the central role of the ocean in sustaining life on Earth.
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  • 41
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    ‘Destructive fishing’—A ubiquitously used but vague term? Usage and impacts across academic research, media and policy (2022)
    Wiley
    In:  EPIC3Fish and Fisheries, Wiley, 23(5), pp. 1039-1054, ISSN: 1467-2960
    Details
    Publication Date: 2024-04-17
    Description: The term ‘destructive fishing’ appears in multiple international policy instruments intended to improve outcomes for marine biodiversity, coastal communities and sustainable fisheries. However, the meaning of ‘destructive fishing’ is often vague, limiting effectiveness in policy. Therefore, in this study, we systematically reviewed the use of ‘destructive fishing’ in three record types: academic literature, media articles and policy documents between 1976 and 2020. A more detailed analysis was performed on subsets of these records, considering the extent to which the term is characterised, geographic distribution of use, and specific impacts and practices associated with the term. We found that use of ‘destructive fishing’ relative to the generic term ‘fisheries’ has increased since the 1990s. Records focussed predominantly on fishing practices in South-eastern Asia, followed by Southern Asia and Europe. The term was characterised in detail in only 15% of records. Habitat damage and blast/poison fishing were the most associated ecological impacts and gear/practices, respectively. Bottom trawling and unspecified net fishing were regularly linked to destructive fishing. Importantly, the three record types use the term differently. Academic literature tends to specifically articulate the negative impacts, while media articles focus generally on associated gears/practices. Significant regional variation also exists in how the term is used and what phenomena it is applied to. This study provides evidence and recommendations to inform stakeholders in any future pursuit of a unified definition of ‘destructive fishing’ to support more meaningful implementation of global sustainability goals.
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  • 42
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    THE CHANGING BIOGEOCHEMICAL CYCLES OF TUNDRA (2022)
    Wiley
    In:  EPIC3Multi‐Scale Biogeochemical Processes in Soil Ecosystems, Multi‐Scale Biogeochemical Processes in Soil Ecosystems, Hoboken, NJ, Wiley, pp. 157-181, ISBN: 9781119480471
    Details
    Publication Date: 2024-04-22
    Description: Tundra is experiencing more intense warming than any other ecosystem on earth. While warming is the most direct effect of climate change on tundra, warming leads to a cascade of environmental changes such as permafrost thaw, altered precipitation regimes, and increased wildfires. This chapter will first focus on how climate change is changing the environment of Arctic and subarctic tundra and then focus on how climate change is altering tundra's carbon, nitrogen, and phosphorus cycles with a focus on soils. Overall, tundra soils are shifting from being a carbon sink into a carbon source as rising temperatures increase microbial activity—a positive feedback to climate change. However, those rising temperatures are also increasing nutrient mineralization rates, which could increase ecosystem carbon storage via enhanced plant productivity as well as increase emissions of nitrous oxide, a powerful greenhouse gas. There is currently a disconnect between the large soil carbon losses measured in many in situ experiments and the strong plant carbon gains predicted by models. Ultimately, more research is needed on the interplay between tundra soils, nutrients, and plants to determine the magnitude of tundra's feedback to climate change.
    Repository Name: EPIC Alfred Wegener Institut
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  • 43
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    Megadroughts in the Common Era and the Anthropocene (2022)
    Springer Nature
    In:  EPIC3Nature Reviews Earth & Environment, Springer Nature, 3(11), pp. 741-757, ISSN: 2662-138X
    Details
    Publication Date: 2024-04-22
    Description: Exceptional drought events, known as megadroughts, have occurred on every continent outside Antarctica over the past ~2,000 years, causing major ecological and societal disturbances. In this Review, we discuss shared causes and features of Common Era (Year 1–present) and future megadroughts. Decadal variations in sea surface temperatures are the primary driver of megadroughts, with secondary contributions from radiative forcing and land–atmosphere interactions. Anthropogenic climate change has intensified ongoing megadroughts in south-western North America and across Chile and Argentina. Future megadroughts will be substantially warmer than past events, with this warming driving projected increases in megadrought risk and severity across many regions, including western North America, Central America, Europe and the Mediterranean, extratropical South America, and Australia. However, several knowledge gaps currently undermine confidence in understanding past and future megadroughts. These gaps include a paucity of high-resolution palaeoclimate information over Africa, tropical South America and other regions; incomplete representations of internal variability and land surface processes in climate models; and the undetermined capacity of water-resource management systems to mitigate megadrought impacts. Addressing these deficiencies will be crucial for increasing confidence in projections of future megadrought risk and for resiliency planning.
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    Expanding beaver pond distribution in Arctic Alaska, 1949 to 2019 (2022)
    Springer Nature
    In:  EPIC3Scientific Reports, Springer Nature, 12(1), pp. 7123-7123, ISSN: 2045-2322
    Details
    Publication Date: 2024-01-30
    Description: Beavers were not previously recognized as an Arctic species, and their engineering in the tundra is considered negligible. Recent findings suggest that beavers have moved into Arctic tundra regions and are controlling surface water dynamics, which strongly influence permafrost and landscape stability. Here we use 70 years of satellite images and aerial photography to show the scale and magnitude of northwestward beaver expansion in Alaska, indicated by the construction of over 10,000 beaver ponds in the Arctic tundra. The number of beaver ponds doubled in most areas between ~ 2003 and ~ 2017. Earlier stages of beaver engineering are evident in ~ 1980 imagery, and there is no evidence of beaver engineering in ~ 1952 imagery, consistent with observations from Indigenous communities describing the influx of beavers over the period. Rapidly expanding beaver engineering has created a tundra disturbance regime that appears to be thawing permafrost and exacerbating the effects of climate change.
    Repository Name: EPIC Alfred Wegener Institut
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  • 45
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    Delayed Antarctic sea-ice decline in high-resolution climate change simulations (2022)
    Springer
    In:  EPIC3Nature Communications, Springer, 13(637), ISSN: 2041-1723
    Details
    Publication Date: 2024-01-31
    Description: Despite global warming and Arctic sea-ice loss, on average the Antarctic sea-ice extent has not declined since 1979 when satellite data became available. In contrast, climate model simulations tend to exhibit strong negative sea-ice trends for the same period. This Antarctic sea-ice paradox leads to low confidence in 21st-century sea-ice projections. Here we present multi-resolution climate change projections that account for Southern Ocean mesoscale eddies. The high-resolution configuration simulates stable September Antarctic sea-ice extent that is not projected to decline until the mid-21st century. We argue that one reason for this finding is a more realistic ocean circulation that increases the equatorward heat transport response to global warming. As a result, the ocean becomes more efficient at moderating the anthropogenic warming around Antarctica and hence at delaying sea-ice decline. Our study suggests that explicitly simulating Southern Ocean eddies is necessary for providing Antarctic sea-ice projections with higher confidence.
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  • 46
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    Degrading permafrost river catchments and their impact on Arctic Ocean nearshore processes (2022)
    Springer Nature
    In:  EPIC3Ambio, Springer Nature, ISSN: 0044-7447
    Details
    Publication Date: 2024-01-22
    Description: Arctic warming is causing ancient perennially frozen ground (permafrost) to thaw, resulting in ground collapse, and reshaping of landscapes. This threatens Arctic peoples' infrastructure, cultural sites, and land-based natural resources. Terrestrial permafrost thaw and ongoing intensification of hydrological cycles also enhance the amount and alter the type of organic carbon (OC) delivered from land to Arctic nearshore environments. These changes may affect coastal processes, food web dynamics and marine resources on which many traditional ways of life rely. Here, we examine how future projected increases in runoff and permafrost thaw from two permafrost-dominated Siberian watersheds—the Kolyma and Lena, may alter carbon turnover rates and OC distributions through river networks. We demonstrate that the unique composition of terrestrial permafrost-derived OC can cause significant increases to aquatic carbon degradation rates (20 to 60% faster rates with 1% permafrost OC). We compile results on aquatic OC degradation and examine how strengthening Arctic hydrological cycles may increase the connectivity between terrestrial landscapes and receiving nearshore ecosystems, with potential ramifications for coastal carbon budgets and ecosystem structure. To address the future challenges Arctic coastal communities will face, we argue that it will become essential to consider how nearshore ecosystems will respond to changing coastal inputs and identify how these may affect the resiliency and availability of essential food resources.
    Repository Name: EPIC Alfred Wegener Institut
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    Vertical redistribution of principle water masses on the Northeast Greenland Shelf (2022)
    Springer Nature
    In:  EPIC3Nature Communications, Springer Nature, 13(1), pp. 7660-7660, ISSN: 2041-1723
    Details
    Publication Date: 2024-04-08
    Description: The Northeast Greenland shelf (NEGS) is a recipient of Polar Water (PW) from the Arctic Ocean, Greenland Ice Sheet melt, and Atlantic Water (AW). Here, we compile hydrographical measurements to quantify long-term changes in fjords and coastal waters. We find a profound change in the vertical distribution of water masses, with AW shoaling 〉60 m and PW thinning 〉50 m since early 2000’s. The properties of these waters have also changed. AW is now 1 °C warmer and the salinity of surface waters and PW are 1.8 and 0.68 lower, respectively. The AW changes have substantially weakened stratification south of ~74°N, indicating increased accessibility of heat and potentially nutrients associated with AW. The Atlantification earlier reported for the eastern Fram Strait and Barents Sea region has also propagated to the NEGS. The increased presence of AW, is an important driver for regional change leading to a likely shift in ecosystem structure and function.
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    Mapping subsea permafrost with electrical resistivity surveys (2022)
    Springer
    In:  EPIC3Nature Reviews Earth & Environment, Springer, 3(6)
    Details
    Publication Date: 2024-04-19
    Repository Name: EPIC Alfred Wegener Institut
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    Lessons Learned in the Digital Earth Project (2022)
    Springer Nature
    In:  EPIC3Springer Nature, pp. 145-148, ISBN: 9783030995454
    Details
    Publication Date: 2024-05-03
    Description: 〈jats:title〉Abstract〈/jats:title〉〈jats:p〉The Digital Earth project aimed for the integration of data science and Earth science. Here, we reflect on the main lessons learned that include the need for interdisciplinary collaboration, thinking out of the box, the concept of ‘thinking in workflows’ and models for the sustainable implementation of scientific software, data infrastructure and policies.〈/jats:p〉
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    Data Science and Earth System Science (2022)
    Springer Nature
    In:  EPIC3Springer Nature, pp. 1-6, ISBN: 9783030995454
    Details
    Publication Date: 2024-05-03
    Description: 〈jats:title〉Abstract〈/jats:title〉〈jats:p〉Data-driven science has turned into a fourth fundamental paradigm of performing research. Earth System Science, following a holistic approach in unraveling the complex network of processes and interactions shaping system Earth, particularly profits from embracing data-driven approaches next to observation and modeling. At the end, increasing digitalization of Earth sciences will lead to cultural transformation towards a Digital Earth Culture.〈/jats:p〉
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    The Digital Earth Project: Focus and Agenda (2022)
    Springer Nature
    In:  EPIC3Springer Nature, pp. 7-16, ISBN: 9783030995454
    Details
    Publication Date: 2024-05-03
    Description: 〈jats:title〉Abstract〈/jats:title〉〈jats:p〉Digital Earth is a project funded by the German Helmholtz Association with all centers of the research field Earth and Environment involved. The main goal of the Digital Earth project is to develop and bundle data science methods in extendable and maintainable scientific workflows that enable natural scientists in collaboration with data scientists to achieve a deeper understanding of the Earth system. This has been achieved by developing solutions for data analysis and exploration with visual and computational approaches with data obtained in a SMART monitoring approach and modeling studies, accompanied by a continuous evaluation of the collaboration processes. In this chapter, the history, setup, and focus of the Digital Earth project are described.〈/jats:p〉
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    Animal behavior is central in shaping the realized diel light niche (2022)
    Springer Nature
    In:  EPIC3Communications Biology, Springer Nature, 5(1), pp. 562-, ISSN: 2399-3642
    Details
    Publication Date: 2024-05-10
    Description: Animal behavior in space and time is structured by the perceived day/night cycle. However, this is modified by the animals’ own movement within its habitat, creating a realized diel light niche (RDLN). To understand the RDLN, we investigated the light as experienced by zooplankton undergoing synchronized diel vertical migration (DVM) in an Arctic fjord around the spring equinox. We reveal a highly dampened light cycle with diel changes being about two orders of magnitude smaller compared to the surface or a static depth. The RDLN is further characterized by unique wavelength-specific irradiance cycles. We discuss the relevance of RDLNs for animal adaptations and interactions, as well as implications for circadian clock entrainment in the wild and laboratory.
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    A Cryptochrome adopts distinct moon- and sunlight states and functions as sun- versus moonlight interpreter in monthly oscillator entrainment (2022)
    Springer Nature
    In:  EPIC3Nature Communications, Springer Nature, 13(1), pp. 5220-, ISSN: 2041-1723
    Details
    Publication Date: 2024-05-10
    Description: The moon’s monthly cycle synchronizes reproduction in countless marine organisms. The mass-spawning bristle worm Platynereis dumerilii uses an endogenous monthly oscillator set by full moon to phase reproduction to specific days. But how do organisms recognize specific moon phases? We uncover that the light receptor L-Cryptochrome (L-Cry) discriminates between different moonlight durations, as well as between sun- and moonlight. A biochemical characterization of purified L-Cry protein, exposed to naturalistic sun- or moonlight, reveals the formation of distinct sun- and moonlight states characterized by different photoreduction- and recovery kinetics of L-Cry’s cofactor Flavin Adenine Dinucleotide. In Platynereis, L-Cry’s sun- versus moonlight states correlate with distinct subcellular localizations, indicating different signaling. In contrast, r-Opsin1, the most abundant ocular opsin, is not required for monthly oscillator entrainment. Our work reveals a photo-ecological concept for natural light interpretation involving a “valence interpreter” that provides entraining photoreceptor(s) with light source and moon phase information.
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  • 54
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    COI metabarcoding of large benthic Foraminifera: Method validation for application in ecological studies (2022)
    Wiley
    In:  Ecology and Evolution vol. 12 no. e9549 | H2020 European Institute of Innovation and Technology, Grant/Award Number: 813360; Nederlandse Organisatie voor Wetenschappelijk Onderzoek, Grant/ Award Number: 16.161.301
    Details
    Publication Date: 2024-06-13
    Description: Monitoring community composition of Foraminifera (single-celled marine protists) pro-vides valuable insights into environmental conditions in marine ecosystems. Despitethe efficiency of environmental DNA (eDNA) and bulk-sample DNA (bulk-DNA) me-tabarcoding to assess the presence of multiple taxa, this has not been straightforwardfor Foraminifera partially due to the high genetic variability in widely used ribosomalmarkers. Here, we test the correctness in retrieving foraminiferal communities by me-tabarcoding of mock communities, bulk-DNA from coral reef sediment samples, andeDNA from their associated ethanol preservative using the recently sequenced cy-tochrome c oxidase subunit 1 (COI) marker. To assess the detection success, we com-pared our results with large benthic foraminiferal communities previously reportedfrom the same sampling sites. Results from our mock communities demonstrate thatall species were detected in two mock communities and all but one in the remainingfour. Technical replicates were highly similar in number of reads for each assigned ASVin both the mock communities and bulk-DNA samples. Bulk-DNA showed a signifi-cantly higher species richness than their associated eDNA samples, and also detectedadditional species to what was already reported at the specific sites. Our study con-firms that metabarcoding using the foraminiferal COI marker adequately retrieves thediversity and community composition of both the mock communities and the bulk-DNA samples. With its decreased variability compared with the commonly used nu-clear 18 S rRNA, the COI marker renders bulk-DNA metabarcoding a powerful tool toassess foraminiferal community composition under the condition that the referencedatabase is adequate to the target taxa.
    Keywords: bulk-sample ; DNA ; community composition ; coral reef ; environmental DNA ; foraminifera ; metabarcoding
    Repository Name: National Museum of Natural History, Netherlands
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    The deglacial forest conundrum (2022)
    Springer Nature
    In:  EPIC3Nature Communications, Springer Nature, 13(1), pp. 6035-6035, ISSN: 2041-1723
    Details
    Publication Date: 2024-06-21
    Description: How fast the Northern Hemisphere (NH) forest biome tracks strongly warming climates is largely unknown. Regional studies reveal lags between decades and millennia. Here we report a conundrum: Deglacial forest expansion in the NH extra-tropics occurs approximately 4000 years earlier in a transient MPI-ESM1.2 simulation than shown by pollen-based biome reconstructions. Shortcomings in the model and the reconstructions could both contribute to this mismatch, leaving the underlying causes unresolved. The simulated vegetation responds within decades to simulated climate changes, which agree with pollen-independent reconstructions. Thus, we can exclude climate biases as main driver for differences. Instead, the mismatch points at a multi-millennial disequilibrium of the NH forest biome to the climate signal. Therefore, the evaluation of time-slice simulations in strongly changing climates with pollen records should be critically reassessed. Our results imply that NH forests may be responding much slower to ongoing climate changes than Earth System Models predict.
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    Last Interglacial decadal sea surface temperature variability in the eastern Mediterranean (2022)
    Springer Nature
    In:  EPIC3Nature Geoscience, Springer Nature, 15(10), pp. 812-818, ISSN: 1752-0894
    Details
    Publication Date: 2024-06-21
    Description: The Last Interglacial (~129,000–116,000 years ago) is the most recent geologic period with a warmer-than-present climate. Proxy-based temperature reconstructions from this interval can help contextualize natural climate variability in our currently warming world, especially if they can define changes on decadal timescales. Here, we established a ~4.800-year-long record of sea surface temperature (SST) variability from the eastern Mediterranean Sea at 1–4-year resolution by applying mass spectrometry imaging of long-chain alkenones to a finely laminated organic-matter-rich sapropel deposited during the Last Interglacial. We observe the highest amplitude of decadal variability in the early stage of sapropel deposition, plausibly due to reduced vertical mixing of the highly stratified water column. With the subsequent reorganization of oceanographic conditions in the later stage of sapropel deposition, when SST forcing resembled the modern situation, we observe that the maximum amplitude of reconstructed decadal variability did not exceed the range of the recent period of warming climate. The more gradual, centennial SST trends reveal that the maximal centennial scale SST increase in our Last Interglacial record is below the projected temperature warming in the twenty-first century.
    Repository Name: EPIC Alfred Wegener Institut
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    Climate, glacial and vegetation history of the polar Ural Mountains since c. 27 cal ka bp, inferred from a 54 m long sediment core from Lake Bolshoye Shchuchye (2022)
    Wiley
    In:  EPIC3Journal of Quaternary Science, Wiley, 37(5), pp. 818-835, ISSN: 0267-8179
    Details
    Publication Date: 2024-06-20
    Description: Because continuous and high-resolution records are scarce in the polar Urals, a multiproxy study was carried out on a 54 m long sediment succession (Co1321) from Lake Bolshoye Shchuchye. The sedimentological, geochemical, pollen and chironomid data suggest that glaciers occupied the lake's catchment during the cold and dry MIS 2 and document a change in ice extent around 23.5–18 cal ka bp. Subsequently, meltwater input, sediment supply and erosional activity decreased as local glaciers progressively melted. The vegetation around the lake comprised open, herb and grass-dominated tundra-steppe until the Bølling-Allerød, but shows a distinct change to probably moister conditions around 17–16 cal ka bp. Local glaciers completely disappeared during the Bølling-Allerød, when summer air temperatures were similar to today and low shrub tundra became established. The Younger Dryas is confined by distinct shifts in the pollen and chironomid records pointing to drier conditions. The Holocene is characterised by a denser vegetation cover, stabilised soil conditions and decreased minerogenic input, especially during the local thermal maximum between c. 10 and 5 cal ka bp. Subsequently, present-day vegetation developed and summer air temperatures decreased to modern, except for two intervals, which may represent the Little Ice Age and Medieval Warm Period.
    Repository Name: EPIC Alfred Wegener Institut
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    Pleistocene glacial and interglacial ecosystems inferred from ancient DNA analyses of permafrost sediments from Batagay megaslump, East Siberia (2022)
    Wiley
    In:  EPIC3Environmental DNA, Wiley, 4(6), pp. 1265-1283, ISSN: 2637-4943
    Details
    Publication Date: 2024-06-18
    Description: Pronounced glacial and interglacial climate cycles characterized northern ecosystems during the Pleistocene. Our understanding of the resultant community transformations and past ecological interactions strongly depends on the taxa found in fossil assemblages. Here, we present a shotgun metagenomic analysis of sedimentary ancient DNA (sedaDNA) to infer past ecosystem-wide biotic composition (from viruses to megaherbivores) from the Middle and Late Pleistocene at the Batagay megaslump, East Siberia. The shotgun DNA records of past vegetation composition largely agree with pollen and plant metabarcoding data from the same samples. Interglacial ecosystems at Batagay attributed to Marine Isotope Stage (MIS) 17 and MIS 7 were characterized by forested vegetation (Pinus, Betula, Alnus) and open grassland. The microbial and fungal communities indicate strong activity related to soil decomposition, especially during MIS17. The local landscape likely featured more open, herb-dominated areas, and the vegetation mosaic supported birds and small omnivorous mammals. Parts of the area were intermittently/partially flooded as suggested by the presence of water-dependent taxa. During MIS 3, the sampled ecosystems are identified as cold-temperate, periodically flooded grassland. Diverse megafauna (Mammuthus, Equus, Coelodonta) coexisted with small mammals (rodents). The MIS 2 ecosystems existed under harsher conditions, as suggested by the presence of cold-adapted herbaceous taxa. Typical Pleistocene megafauna still inhabited the area. The new approach, in which shotgun sequencing is supported by metabarcoding and pollen data, enables the investigation of community composition changes across a broad range of taxonomic groups and inferences about trophic interactions and aspects of soil microbial ecology.
    Repository Name: EPIC Alfred Wegener Institut
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    Larix species range dynamics in Siberia since the Last Glacial captured from sedimentary ancient DNA (2022)
    Springer Nature
    In:  EPIC3Communications Biology, Springer Nature, 5(1), pp. 570-570, ISSN: 2399-3642
    Details
    Publication Date: 2024-06-18
    Description: Climate change is expected to cause major shifts in boreal forests which are in vast areas of Siberia dominated by two species of the deciduous needle tree larch (Larix). The species differ markedly in their ecosystem functions, thus shifts in their respective ranges are of global relevance. However, drivers of species distribution are not well understood, in part because paleoecological data at species level are lacking. This study tracks Larix species distribution in time and space using target enrichment on sedimentary ancient DNA extracts from eight lakes across Siberia. We discovered that Larix sibirica, presently dominating in western Siberia, likely migrated to its northern distribution area only in the Holocene at around 10,000 years before present (ka BP), and had a much wider eastern distribution around 33 ka BP. Samples dated to the Last Glacial Maximum (around 21 ka BP), consistently show genotypes of L. gmelinii. Our results suggest climate as a strong determinant of species distribution in Larix and provide temporal and spatial data for species projection in a changing climate.
    Repository Name: EPIC Alfred Wegener Institut
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    Marine Mikroorganismen für den Plastikabbau (2022)
    Springer
    Details
    Publication Date: 2023-01-04
    Description: Millions of tons of plastic waste are released into the marine environment every year. While they steadily accumulate, synthetic polymers provide a habitat for microorganisms. This denominated Plastisphere has been studied in detail over the past ten years. So have the enzymes responsible for microbial degradation, which are unfortunately lacking for most sorts of plastics. Therefore, the BMBF-funded project PLASTISEA is focusing on bioprospecting the marine treasure trove for novel plastic acting enzymes.
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    Cross-domain fusion in smart seafloor sensor networks (2022)
    Springer
    Details
    Publication Date: 2023-01-04
    Description: Many of the socio-economic and environmental challenges of the 21st century like the growing energy and food demand, rising sea levels and temperatures put stress on marine ecosystems and coastal populations. This requires a significant strengthening of our monitoring capacities for processes in the water column, at the seafloor and in the subsurface. However, present-day seafloor instruments and the required infrastructure to operate these are expensive and inaccessible. We envision a future Internet of Underwater Things, composed of small and cheap but intelligent underwater nodes. Each node will be equipped with sensing, communication, and computing capabilities. Building on distributed event detection and cross-domain data fusion, such an Internet of Underwater Things will enable new applications. In this paper, we argue that to make this vision a reality, we need new methodologies for resource-efficient and distributed cross-domain data fusion. Resource-efficient, distributed neural networks will serve as data-analytics pipelines to derive highly aggregated patterns of interest from raw data. These will serve as (1) a common base in time and space for fusion of heterogeneous data, and (2) be sufficiently small to be transmitted efficiently in resource-constrained settings.
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    Fusion seismischer, akustischer und optischer Unterwasserdaten und Modelle zur Analyse submariner Hangrutschungen an Vulkansystemen (2022)
    Springer
    Details
    Publication Date: 2023-01-04
    Description: Die Messung submariner Bodendeformationen an den Flanken von Inselvulkanen hilft dabei, ihre Stabilität und die Gefahr von Hangrutschungen einzuschätzen, ist aber inherent schwierig für Gebiete, die unter Wasser liegen. Wiederholte Seismik- oder Fächerecholot-Vermessungen können größere Gebiete abdecken, aber Auflösung und Lokalisierung sind bestimmten Grenzen unterworfen. Optische Daten andererseits sind besser aufgelöst, aber limitiert in ihrer räumlichen Abdeckung, und Meeresbodengeodäsie wiederum liefert nur punktuelle Information. In diesem Artikel schlagen wir vor, verschiedene Arten von Fernerkundungsdaten zusammenzubringen und auch mit bestehenden statischen und dynamischen Modellen zu verschneiden. Aufgrund ihrer verschiedenen Modalitäten, Unsicherheiten und Skalierungen ist dies jedoch schwierig und bedarf einer Fusion. Zusammen mit anderen Aspekten (Erdbeben, Strömungen etc.) sollen die fusionierten Daten und Modelle langfristig neue Einblicke in das dynamische System des sich verändernden Meeresbodens, die dafür verantwortlichen Faktoren sowie die Auswirkungen instabiler submariner Hänge auf andere Meeressysteme bieten.
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    The Marine Biodiversity Observation Network Plankton Workshops: Plankton Ecosystem Function, Biodiversity, and Forecasting - Research Requirements and Applications (2022)
    ASLO (Association for the Sciences of Limnology and Oceanography) | Wiley
    Details
    Publication Date: 2023-01-04
    Description: Plankton is a massive and phylogenetically diverse group of thousands of prokaryotes, protists (unicellular eukaryotic organisms), and metazoans (multicellular eukaryotic organisms; Fig. 1). Plankton functional diversity is at the core of various ecological processes, including productivity, carbon cycling and sequestration, nutrient cycling (Falkowski 2012), interspecies interactions, and food web dynamics and structure (D'Alelio et al. 2016). Through these functions, plankton play a critical role in the health of the coastal and open ocean and provide essential ecosystem services. Yet, at present, our understanding of plankton dynamics is insufficient to project how climate change and other human-driven impacts affect the functional diversity of plankton. That limits our ability to predict how critical ecosystem services will change in the future and develop strategies to adapt to these changes.
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    Getting the big picture in cross-domain fusion (2022)
    Springer
    Details
    Publication Date: 2023-01-04
    Description: A central promise of cross-domain fusion (CDF) is the provision of a “bigger picture” that integrates different disciplines and may span very different levels of detail. We present a number of settings that call for this bigger picture, with a particular focus on how information from several domains can be made easily accessible and visualizable for different stakeholders. We propose harnessing an approach that is now well established in interactive maps, which we refer to as the “Google maps approach” (Google LLC, Mountain View, CA, USA), which combines effective filtering with intuitive user interaction. We expect this approach to be applicable to a range of CDF settings.
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    Physical mechanisms of the linear stabilization of convection by rotation (2022)
    American Physical Society
    Details
    Publication Date: 2023-01-04
    Description: Despite the well-known limitations of linear stability theory in describing nonlinear and turbulent flows, it has been found to accurately capture the transitions between certain nonlinear flow behavior. Specifically, the transition in heat flux scaling in rotating convective flows can be well predicted by applying a linear stability analysis to simple profiles of a convective boundary layer. This fact motivates the present study of the linear mechanisms involved in the stability properties of simple convective setups subject to rotation. We look at an idealized two-layer setup and gradually add complexity by including rotation, a bounded domain, and viscosity. The two-layer setup has the advantage of allowing for the use of wave interaction theory, traditionally applied to understand stratified and homogeneous shear flow instabilities, in order to quantify the various physical mechanisms leading to the growth of convective instabilities. We quantitatively show that the physical mechanisms involved in the stabilization of convection by rotation take two different forms acting within the stratified interfacial region, and in the homogeneous mixed layers. The latter of these we associate with the tendency of a rotating flow to develop Taylor columns (TCs). This TC mechanism can lead to both a stabilization or destabilization of the instability and varies depending on the parameters of the problem. A simple criterion is found for classifying the influence of these physical mechanisms.
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    The Extreme North African Haboob in October 2008: High‐Resolution Simulation of Organized Moist Convection in the Lee of the Atlas, Dust Recirculation and Poleward Transport (2022)
    AGU (American Geophysical Union) | Wiley
    Details
    Publication Date: 2023-01-04
    Description: This study investigates the mesoscale dynamics involved in the 8–11 October 2008 unseasonably strong African dust episode, during which dust was transported to the Iberian Peninsula (IP). We employ observational datasets and a high-resolution Weather Research and Forecasting model coupled with Chemistry simulations. The analysis shows that during 0900–1200 UTC 9 October, a mesoscale convective system developed over the Atlas Mountains and resulted in a southwestward propagating convective cold pool outflow on the southern foothills of the Anti-Atlas, which lifted dust from the source region. Between 1200 and 1800 UTC 9 October, new moist convection was enhanced over the Atlas Mountains due to intensifying confluence among a heat low, moist southwesterly Atlantic sea-breeze front, and northeasterly flow associated with the convective cold pool near western Algeria. This new moist convection intensified the strength of the convective cold pool outflow and haboob, both of which continued propagating southwestward. At 1200 UTC 10 October, the low-pressure system migrated poleward on the southern slopes of the Anti-Atlas Mountains in association with a mountain-plains solenoidal circulation due to the daytime differential heating between the southern slopes of the Anti-Atlas and nearby atmosphere. The deepening low-pressure and strengthening Atlantic sea-breeze redirected an equatorward advancing dust plume into the poleward direction. The dust plume ultimately crossed the Saharan Atlas Mountains on 11 October and finally impacted the IP. Key Points: - WRF-Chem simulation of an unseasonably strong haboob on the southern slopes of the Atlas Mountains - The equatorward-advancing dust plume was recirculated in the poleward direction by an Atlantic sea-breeze front - The Atlantic sea-breeze front and an intensified upper-level cutoff vortex are instrumental for dust transport over the Iberian Peninsula
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    A Data-Centric Approach for Improving Ambiguous Labels with Combined Semi-supervised Classification and Clustering (2022)
    Springer
    Details
    Publication Date: 2023-01-02
    Description: Consistently high data quality is essential for the development of novel loss functions and architectures in the field of deep learning. The existence of such data and labels is usually presumed, while acquiring high-quality datasets is still a major issue in many cases. Subjective annotations by annotators often lead to ambiguous labels in real-world datasets. We propose a data-centric approach to relabel such ambiguous labels instead of implementing the handling of this issue in a neural network. A hard classification is by definition not enough to capture the real-world ambiguity of the data. Therefore, we propose our method “Data-Centric Classification & Clustering (DC3)” which combines semi-supervised classification and clustering. It automatically estimates the ambiguity of an image and performs a classification or clustering depending on that ambiguity. DC3 is general in nature so that it can be used in addition to many Semi-Supervised Learning (SSL) algorithms. On average, our approach yields a 7.6% better F1-Score for classifications and a 7.9% lower inner distance of clusters across multiple evaluated SSL algorithms and datasets. Most importantly, we give a proof-of-concept that the classifications and clusterings from DC3 are beneficial as proposals for the manual refinement of such ambiguous labels. Overall, a combination of SSL with our method DC3 can lead to better handling of ambiguous labels during the annotation process. (Source code is available at https://github.com/Emprime/dc3).
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    Insights into Gas Hydrate Dynamics from 3D Seismic Data, Offshore Mauritania (2022)
    Springer
    Details
    Publication Date: 2023-01-19
    Description: The gas hydrate system off Mauritania is characterized by the undulating landward termination of a gas hydrate-related bottom simulating reflector (BSR). Some of the most landward sections of this BSR reach up to within 6 m of the seafloor. This suggests a shallow sulphate-methane-interface over an unusually large area. We attribute this to the presence of large amounts of methane due to the efficient burial of organic matter in a high-productivity oceanographic region, and the efficient channelling of methane along permeable turbidite beds towards the feather edge of the gas hydrate stability zone. This is consistent with the observation of steps in the BSR, where it cross-cuts other inferred permeable horizons. The high thermal conductivity of a salt dome in the southern part of the study area distorts the subsurface temperature field, giving the base of the hydrate stability zone a concave-down shape. Within this anticline of the BSR, high amplitudes and a horizontal reflection that crosses the sedimentary strata indicate the entrapment of free gas. We interpret this as a direct indication of a reduced hydraulic permeability of the hydrate-bearing sediment.
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    Uncertainty in Aerosol Optical Depth From Modern Aerosol‐Climate Models, Reanalyses, and Satellite Products (2022)
    AGU (American Geophysical Union) | Wiley
    Details
    Publication Date: 2023-01-24
    Description: Despite the implication of aerosols for the radiation budget, there are persistent differences in data for the aerosol optical depth (τ) for 1998–2019. This study presents a comprehensive evaluation of the large-scale spatio-temporal patterns of mid-visible τ from modern data sets. In total, we assessed 94 different global data sets from eight satellite retrievals, four aerosol-climate model ensembles, one operational ensemble product, two reanalyses, one climatology and one merged satellite product. We include the new satellite data SLSTR and aerosol-climate simulations from the Coupled Model Intercomparison Project Phase 6 (CMIP6) and the Aerosol Comparisons between Observations and Models Phase 3 (AeroCom-III). Our intercomparison highlights model differences and observational uncertainty. Spatial mean τ for 60°N – 60°S ranges from 0.124 to 0.164 for individual satellites, with a mean of 0.14. Averaged τ from aerosol-climate model ensembles fall within this satellite range, but individual models do not. Our assessment suggests no systematic improvement compared to CMIP5 and AeroCom-I. Although some regional biases have been reduced, τ from both CMIP6 and AeroCom-III are for instance substantially larger along extra-tropical storm tracks compared to the satellite products. The considerable uncertainty in observed τ implies that a model evaluation based on a single satellite product might draw biased conclusions. This underlines the need for continued efforts to improve both model and satellite estimates of τ, for example, through measurement campaigns in areas of particularly uncertain satellite estimates identified in this study, to facilitate a better understanding of aerosol effects in the Earth system. Key Points: - Present-day patterns in aerosol optical depth differ substantially between 94 modern global data sets - The range in spatial means from individual satellites is −11% to +17% of the multi-satellite mean - Spatial means from climate model intercomparison projects fall within the satellite range but strong regional differences are identified
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    Gemini connector: Interfacing differentiable physical models and neural networks (2022)
    Springer
    Details
    Publication Date: 2023-01-24
    Description: Spectacular advances have been made in the field of machine vision over the past decade. While this discipline is traditionally driven by geometric models, neural networks have proven to be superior in some applications and have significantly expanded the limits of what is possible. At the same time, conventional graphic models describe the relationship between images and the associated scene with textures and light in a physically realistic manner and are an important part of photogrammetry. Differential renderers combine these approaches by enabling gradient-based optimization in fixed structures of a graphics pipeline and thus adapt the learning process of neural networks. This fusion of formalized knowledge and machine learning motivates the idea of a modular differentiable renderer in which physical and statistical models can be recombined depending on the use case. We therefore present Gemini Connector: an initiative for the modular development and combination of differentiable physical models and neural networks. We examine opportunities and problems and motivate the idea with the extension of a differentiable rendering pipeline to include models of underwater optics for the analysis of deep sea images. Finally, we discuss use cases, especially within the Cross-Domain Fusion initiative.
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    Observations and Implications of Diurnal Climatology and Trends in Direct and Diffuse Solar Radiation Over China (2022)
    AGU (American Geophysical Union) | Wiley
    Details
    Publication Date: 2023-01-24
    Description: Solar radiation received at the Earth's surface (Rs) is comprised of two components, the direct radiation (Rd) and the diffuse radiation (Rf). Rd, the direct beam from the sun, is essential for concentrated solar power generation. Rf, scattered by atmospheric molecules, aerosols, or cloud droplets, has a fertilization effect on plant photosynthesis. But how Rd and Rf change diurnally is largely unknown owing to the lack of long-term measurements. Taking advantage of 22 years of homogeneous hourly surface observations over China, this study documents the climatological means and evolutions in the diurnal cycles of Rd and Rf since 1993, with an emphasis on their implications for solar power and agricultural production. Over the solar energy resource region, we observe a loss of Rd which is relatively large near sunrise and sunset at low solar elevation angles when the sunrays pass through the atmosphere on a longer pathway. However, the concentrated Rd energy covering an average 10-hr period around noon during a day is relatively unaffected. Over the agricultural crop resource region, the large amounts of clouds and aerosols scattering more of the incoming light result in Rf taking the main proportion of Rs during the whole day. Rf resources and their fertilization effect in the main crop region of China further enhances since 1993 over almost all hours of the day. Key Points: - The loss of direct radiation over China since 1993 is relatively large at sunrise and sunset with little effect on solar power generation - The diffuse component dominates solar radiation normally near sunrise and sunset, but for the whole day over the main sown area of China - The diffuse fraction is further enhanced in the main sown area of China over almost all hours of the day since 1993
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    Modularizing Earth system models for interactive simulation (2022)
    Springer
    Details
    Publication Date: 2023-02-02
    Description: Interactive exploration of Earth system simulations may have great potential to improve the scientific modeling process. It will allow monitoring of the state of the simulation via dashboards presenting real-time diagnostics within a digital twin world. We present the state of the art for Earth system modeling in this context. Cross-domain data handling and fusion will make it possible to integrate model and observation data in the context of digital twins of the ocean. Domain-driven modularization of monolithic Earth system models allows one to recover interfaces for such a cross-domain fusion. Reverse engineering with static and dynamic analysis enables modularization of Earth system models. The modularization does not only help with restructuring existing Earth system models, it also makes it possible to integrate additional scientific domains into the interactive simulation environment.
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    Spatio-temporal evolution of the Kolumbo Volcanic Chain and its link to the volcanic plumbing system of Santorini (2022)
    AGU (American Geophysical Union) | Wiley
    Details
    Publication Date: 2023-11-20
    Description: Key Points High-resolution reflection seismic data reveals that the internal architecture of the Kolumbo Volcanic Chain The Kolumbo Volcanic Chain evolved during two episodes along NE-SW striking normal faults A prominent volcanic ridge connects the Kolumbo Volcanic Chain with Santorini highlighting a former connection between both systems Abstract The Christiana-Santorini-Kolumbo volcanic field in the southern Aegean Sea is one of the most hazardous volcanic regions in the world. Forming the northeastern part of this volcanic field, the Kolumbo Volcanic Chain (KVC) comprises more than submarine volcanic cones. However, due to their inaccessibility, little is known about the spatio-temporal evolution and tectonic control of these submarine volcanoes and their link to the volcanic plumbing system of Santorini. In this study, we use multichannel reflection seismic imaging to study the internal architecture of the KVC and its link to Santorini. We show that the KVC evolved during two episodes, which initiated at ~1 Ma with the formation of mainly effusive volcanic edifices along a NE-SW trending zone. The cones of the second episode were formed mainly by submarine explosive eruptions between 0.7 and 0.3 Ma and partly developed on top of volcanic edifices from the first episode. We identify two prominent normal faults that underlie and continue the two main trends of the KVC, indicating a direct link between tectonics and volcanism. In addition, we reveal several buried volcanic centers and a distinct volcanic ridge connecting the KVC with Santorini, suggesting a connection between the two volcanic centers in the past. This connection was interrupted by a major tectonic event and, as a result, the two volcanic systems now have separate, largely independent plumbing systems despite their proximity
    Type: Article , NonPeerReviewed , info:eu-repo/semantics/article
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    Gas Hydrate and Fluid-Related Seismic Indicators Across the Passive and Active Margins off SW Taiwan (2022)
    Springer
    Details
    Publication Date: 2023-09-28
    Description: Well-constrained and widely distributed bottom simulating reflectors in various geological settings across both passive and active margins make the area offshore southwestern Taiwan an excellent location to study gas hydrate dynamics and fluid flow systems. Seismic data reveal the presence of subsurface fluid flow systems and ubiquitous free gas and gas hydrates. This article aims to summarize and map the different types of seismic observations related to the gas hydrate system. The spatial distribution of seismic indicators for gas accumulation, fluid migration, and the presence of gas hydrates suggests that topographic highs on both passive and active margins are sites of particularly efficient free gas accumulation and gas hydrate formation. Seismic indicators observed in fold and thrust structures suggest that the fluid system in the active margin is structurally controlled and that the highest gas hydrate saturation levels are found in the cores of thrust anticlines on the lower slope of the active margin area.
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    Northern Cascadia Margin Gas Hydrates — Regional Geophysical Surveying, IODP Drilling Leg 311 and Cabled Observatory Monitoring (2022)
    Springer
    Details
    Publication Date: 2023-09-28
    Description: This article reviews extensive geophysical survey data, ocean drilling results and long-term seafloor monitoring that constrain the distribution and concentration of gas hydrates within the accretionary prism of the northern Cascadia subduction margin, located offshore Vancouver Island in Canada. Seismic surveys and geologic studies conducted since the 1980s have mapped the bottom simulating reflector (BSR), detected gas hydrate occurrence and estimated gas hydrate and free gas concentrations. Additional constraints were obtained from seafloor-towed, controlled-source electromagnetic surveying. A component of these studies has been the examination of low-temperature seafloor vents and seeps that emit gas and fluids into the ocean. These features are identified seismically as chimney-like zones of reduced acoustic reflectivity within the sediment stratigraphy, functioning as conduits for gas and fluid migration from below the BSR to the seafloor. Gas hydrates have been recovered from the seafloor and from sediment cores at vent sites, mostly in massive (nodular) form and as a vein-like fracture filling. The Ocean Networks Canada cabled NEPTUNE observatory has gathered extensive continuous, long-term observations on gas hydrate dynamics at the seafloor and in boreholes at two nodes on the continental slope featuring high gas hydrate concentrations. Measurements taken at the observatory include a time-series of gas bubble emission rates, changes in the near-seafloor electromagnetic structure and seafloor compliance linked to gas hydrate formation and dissociation. Two Integrated Ocean Drilling Program (IODP) expeditions collected cores, measured downhole properties and deployed downhole instruments within the central accretionary prism. At IODP Site U1364, pore pressures are being monitored above and below the base of the gas hydrate stability zone at a slope setting using an “Advanced Circulation Obviation Retrofit Kit” (A-CORK). Downhole pore pressures, temperatures and electrical resistivities also are being monitored at IODP Site U1416 using the “Simple Cabled Instrument for Measuring Parameters In Situ” (SCIMPI) tool at a vent site from near-seafloor to just above the base of the gas hydrate stability zone.
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    Risk Assessment for Deep-Seabed Mining (2022)
    Springer
    Details
    Publication Date: 2023-10-06
    Description: Uncertainties concerning deep-seabed mining relate to the expected impacts on the abyssal benthic and pelagic environment and its ecosystems but also include geopolitical, economic, societal and cultural uncertainty. The uncertain impacts from mining lead to anxiety and a low societal acceptance for the activity and are not the same for everybody at the same time. Hence, uncertainty is an important element of the risk involved in deep-seabed mining. This chapter describes the different risks involved, develops a methodology for risk assessment for the exploitation of marine mineral resources that takes into consideration the state of knowledge and evolving research on deep-sea ecosystems, and informs on possible environmental threshold values in relation to deep-seabed mining operations.
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    First Evidence of Bottom Simulation Reflectors in the Western Indian Ocean Offshore Tanzania (2022)
    Springer
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    Publication Date: 2023-10-06
    Description: This article presents the first evidence of bottom simulating reflectors (BSRs) on the continental margin of the western Indian Ocean, offshore Tanzania. The analysis of 2D and 3D seismic reflection data revealed two different types of BSRs. The Type 1 BSR, identified in water depths of 2250–2370 m west of the Seagap fault, shows a continuous reflection that mimics the seafloor, has a reverse polarity with respect to the seafloor and crosscuts the stratigraphy. Type 2 BSRs have been identified on the slope of the Tanzanian margin in water depths less than 1500 m. They are represented by a phase-reversed reflection that mimics the seafloor topography, revealing lateral variations in amplitude that are expressed as changes from high to moderate brightness. Modelling results show that gas hydrates of microbial origin (100% CH4) are stable in a minimum water depth of 740 m and a bottom water temperature of 9 °C, thus indicating a possible microbial origin for the type 2 BSRs. The thickest gas hydrate stability zone is observed within the Kerimbas Graben at water depths of up to 3621 m, with values ranging from 321.4–383.4 m for geothermal gradients of 5.4 °C/100 m and 6.4 °C/100 m, respectively. We suggest that the type 1 BSR may have a thermogenic gas source, as the observed BSR depths are deeper than the calculated base of the gas hydrate stability zone for 100% methane. The interpreted faults that crosscut the stratigraphy may have facilitated gas transport from deeper source rocks.
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    Evaluating species richness using proteomic fingerprinting and DNA barcoding — a case study on meiobenthic copepods from the Clarion Clipperton Fracture Zone (2022)
    Springer
    Details
    Publication Date: 2024-01-08
    Description: The Clarion Clipperton Fracture Zone (CCZ) is a vast deep-sea region harboring a highly diverse benthic fauna, which will be affected by potential future deep-sea mining of metal-rich polymetallic nodules. Despite the need for conservation plans and monitoring strategies in this context, the majority of taxonomic groups remain scientifically undescribed. However, molecular rapid assessment methods such as DNA barcoding and Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS) provide the potential to accelerate specimen identification and biodiversity assessment significantly in the deep-sea areas. In this study, we successfully applied both methods to investigate the diversity of meiobenthic copepods in the eastern CCZ, including the first application of MALDI-TOF MS for the identification of these deep-sea organisms. Comparing several different species delimitation tools for both datasets, we found that biodiversity values were very similar, with Pielou’s evenness varying between 0.97 and 0.99 in all datasets. Still, direct comparisons of species clusters revealed differences between all techniques and methods, which are likely caused by the high number of rare species being represented by only one specimen, despite our extensive dataset of more than 2000 specimens. Hence, we regard our study as a first approach toward setting up a reference library for mass spectrometry data of the CCZ in combination with DNA barcodes. We conclude that proteome fingerprinting, as well as the more established DNA barcoding, can be seen as a valuable tool for rapid biodiversity assessments in the future, even when no reference information is available.
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    Taxonomic assessment of deep-sea decapod crustaceans collected from polymetallic nodule fields of the East Pacific Ocean using an integrative approach (2022)
    Springer
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    Publication Date: 2024-01-08
    Description: Deep-sea decapod crustaceans (Crustacea: Decapoda) collected during nine research cruises to the Clarion-Clipperton Zone (CCZ) in the NE Pacific Ocean and the Peru Basin in the SE Pacific Ocean were studied comprehensively using an integrative taxonomic approach. The abyssal seafloors of both areas are rich in economically interesting polymetallic nodules. All specimens were morphologically identified and genetically analysed using a fragment of the mitochondrial cytochrome c oxidase subunit I (COI). Eight species were collected, comprising three anomurans, three carideans, one dendrobranchiate, and one brachyuran, from water depths ranging between 4089 and 4511 m. COI sequences for representatives of the genera Parapagurus Smith, 1879, Ethusina SI Smith, 1884, and Bathystylodactylus Hanamura & Takeda, 1996 are provided for the first time. The molecular barcodes of the species provided herein will be valuable for the full taxonomic assignment of sequences produced in future metabarcoding and eDNA monitoring work. The new records extend the geographical distributional ranges or fill geographical gaps of the species reported, although none of the species is endemic to polymetallic nodule areas. This study is part of a taxonomic series aiming to describe the biodiversity of areas targeted for future deep-sea mining.
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    Geoengineering: Methods, Associated Risks and International Liability (2022)
    Springer
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    Publication Date: 2024-02-02
    Description: Climate change arguably constitutes one of the greatest risks to the long-term health of the world’s environment. In 2015, the Intergovernmental Panel on Climate Change (IPCC) highlighted that the Earth’s climate system has consistently been warming since the 1950s and that a “large fraction of anthropogenic climate change resulting from CO2 emissions is irreversible on a multi-century to millennial time scale, except in the case of a large net removal of CO2 from the atmosphere over a sustained period”. Initial responses to climate change revolved around States attempting to reduce, rather than remove, greenhouse gas emissions. However, as the global economy expands, greenhouse gas emissions have continued to rise and cooperative arrangements aimed at reducing emissions have had limited, if any, impact. If recent predictions are to be believed, the remaining “carbon budget” needed to prevent average global temperatures from increasing by more than 1.5 °C may be exhausted by 2030. Climate Analytics estimates that the current Nationally Determined Contributions (NDCs) made by States under the Paris Agreement indicate that average global temperatures will rise by 2.8 °C by 2100—almost double the stipulated efforts to limit the temperature increase to 1.5 °C above pre-industrial levels mentioned in Article 2(1)(a) of the Paris Agreement. The recent IPCC Special Report on 1.5 °C Global Warming concludes that without “increased and urgent mitigation ambition in the coming years, leading to a sharp decline in greenhouse gas emissions by 2030, global warming will [cause] irreversible loss of the most fragile ecosystems and crisis after crisis for the most vulnerable people and societies”.
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    Microbial diversity through an oceanographic lens: refining the concept of ocean provinces through trophic‐level analysis and productivity‐specific length scales (2022)
    Wiley
    Details
    Publication Date: 2024-02-07
    Description: In the marine realm, microorganisms are responsible for the bulk of primary production, thereby sustaining marine life across all trophic levels. Longhurst provinces have distinct microbial fingerprints; however, little is known about how microbial diversity and primary productivity change at finer spatial scales. Here, we sampled the Atlantic Ocean from south to north (~50°S–50°N), every ~0.5° latitude. We conducted measurements of primary productivity, chlorophyll-a and relative abundance of 16S and 18S rRNA genes, alongside analyses of the physicochemical and hydrographic environment. We analysed the diversity of autotrophs, mixotrophs and heterotrophs, and noted distinct patterns among these guilds across provinces with high and low chlorophyll-a conditions. Eukaryotic autotrophs and prokaryotic heterotrophs showed a shared inter-province diversity pattern, distinct from the diversity pattern shared by mixotrophs, cyanobacteria and eukaryotic heterotrophs. Additionally, we calculated samplewise productivity-specific length scales, the potential horizontal displacement of microbial communities by surface currents to an intrinsic biological rate (here, specific primary productivity). This scale provides key context for our trophically disaggregated diversity analysis that we could relate to underlying oceanographic features. We integrate this element to provide more nuanced insights into the mosaic-like nature of microbial provincialism, linking diversity patterns to oceanographic transport through primary production.
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    Cold comfort: Arctic seabirds find refugia from climate change and potential competition in marginal ice zones and fjords (2022)
    Springer
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    Publication Date: 2024-02-07
    Description: Climate change alters species distributions by shifting their fundamental niche in space through time. Such effects may be exacerbated by increased inter-specific competition if climate alters species dominance where competitor ranges overlap. This study used census data, telemetry and stable isotopes to examine the population and foraging ecology of a pair of Arctic and temperate congeners across an extensive zone of sympatry in Iceland, where sea temperatures varied substantially. The abundance of Arctic Brünnich’s guillemot Uria lomvia declined with sea temperature. Accessibility of refugia in cold water currents or fjords helped support higher numbers and reduce rates of population decline. Competition with temperate Common guillemots Uria aalge did not affect abundance, but similarities in foraging ecology were sufficient to cause competition when resources are limiting. Continued warming is likely to lead to further declines of Brünnich’s guillemot, with implications for conservation status and ecosystem services
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    Suitability of the Coralline Alga Clathromorphum compactum as an Arctic Archive for Past Sea ice Cover (2022)
    AGU (American Geophysical Union) | Wiley
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    Publication Date: 2024-02-07
    Description: Arctic sea ice cover has been steeply declining since the onset of satellite observations in the late 1970s. However, the available annually resolved sea ice data prior to this time are limited. Here, we evaluated the suitability of annual trace element (Mg/Ca) ratios and growth increments from the long-lived annual increment-forming benthic coralline red alga, Clathromorphum compactum, as high-resolution sea ice cover archive. It has previously been shown that growth of C. compactum is strongly light controlled and therefore greatly limited during polar night and underneath sea ice cover. We compare algal data from 11 sites collected throughout the Canadian Arctic, Greenland and Svalbard, with satellite sea ice data. Our results suggested that algal growth anomalies most often produced better correlations to sea ice concentration than Mg/Ca ratios or when averaging growth and Mg/Ca anomalies. High Arctic regions with persistently higher sea ice concentrations and shorter ice-free seasons showed strongest correlations between algal growth anomalies and satellite sea ice concentration over the study period (1979-2015). At sites where ice breakup took place prior to the return of sufficient solar irradiance, algal growth was most strongly tied to a combination of solar irradiance and other factors such as temperature, suspended sediments, phytoplankton blooms and cloud cover. These data are the only annually resolved in situ marine proxy data known to date and are of utmost importance to gain a better understanding of the sea ice system and to project future sea ice conditions.
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    Invasive alien species as simultaneous benefits and burdens: trends, stakeholder perceptions and management (2022)
    Springer
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    Publication Date: 2024-02-07
    Description: In addition to being a major threat to biodiversity and ecosystem functioning, biological invasions also have profound impacts on economies and human wellbeing. However, the threats posed by invasive species often do not receive adequate attention and lack targeted management. In part, this may result from different or even ambivalent perceptions of invasive species which have a dual effect for stakeholders—being simultaneously a benefit and a burden. For these species, literature that synthesizes best practice is very limited, and analyses providing a comprehensive understanding of their economics are generally lacking. This has resulted in a critical gap in our understanding of the underlying trade-offs surrounding management efforts and approaches. Here, we explore qualitative trends in the literature for invasive species with dual effects, drawing from both the recently compiled InvaCost database and international case studies. The few invasive species with dual roles in InvaCost provide evidence for a temporal increase in reporting of costs, but with benefits relatively sporadically reported alongside costs. We discuss methods, management, assessment and policy frameworks dedicated to these species, along with lessons learned, complexities and persisting knowledge gaps. Our analysis points at the need to enhance scientific understanding of those species through inter- and cross-disciplinary efforts that can help advance their management.
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    Effects of Reversal of Water Flow in an Arctic Floodplain River on Fluvial Emissions of CO 2 and CH 4 (2022)
    AGU (American Geophysical Union) | Wiley
    Details
    Publication Date: 2024-02-07
    Description: When organic matter from thawed permafrost is released, the sources and sinks of greenhouse gases (GHGs), like carbon dioxide (CO2) and methane (CH4) in Arctic rivers will be influenced in the future. However, the temporal variation, environmental controls, and magnitude of the Arctic riverine GHGs are largely unknown. We measured in situ high temporal resolution concentrations of CO2, CH4, and oxygen (O2) in the Ambolikha River in northeast Siberia between late June and early August 2019. During this period, the largely supersaturated riverine CO2 and CH4 concentrations decreased steadily by 90% and 78%, respectively, while the O2 concentrations increased by 22% and were driven by the decreasing water temperature. Estimated gas fluxes indicate that during late June 2019, significant emissions of CO2 and CH4 were sustained, possibly by external terrestrial sources during flooding, or due to lateral exchange with gas-rich downstream-flowing water. In July and early August, the river reversed its flow constantly and limited the water exchange at the site. The composition of dissolved organic matter and microbial communities analyzed in discrete samples also revealed a temporal shift. Furthermore, the cumulative total riverine CO2 emissions (36.8 gC-CO2 m−2) were nearly five times lower than the CO2 uptake at the adjacent floodplain. Emissions of riverine CH4 (0.21 gC-CH4 m−2) were 16 times lower than the floodplain CH4 emissions. Our study revealed that the hydraulic connectivity with the land in the late freshet, and reversing flow directions in Arctic streams in summer, regulate riverine carbon replenishment and emissions.
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    Investigating the basal shear zone of the submarine Tuaheni Landslide Complex, New Zealand: a core‐log‐seismic integration study (2022)
    AGU (American Geophysical Union) | Wiley
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    Publication Date: 2024-02-07
    Description: Although submarine landslides have been studied for decades, a persistent challenge is the integration of diverse geoscientific datasets to characterise failure processes. We present a core-log-seismic integration study of the Tuaheni Landslide Complex to investigate intact sediments beneath the undeformed seafloor as well as post-failure landslide deposits. Beneath the undeformed seafloor are coherent reflections underlain by a weakly-reflective and chaotic seismic unit. This chaotic unit is characterised by variable shear strength that correlates with density fluctuations. The basal shear zone of the Tuaheni landslide likely exploited one (or more) of the low shear strength intervals. Within landslide deposits is a widespread “Intra-debris Reflector”, previously interpreted as the landslide’s basal shear zone. This reflector is a subtle impedance drop around the boundary between upper and lower landslide units. However, there is no pronounced shear strength change across this horizon. Rather, there is a pronounced reduction in shear strength ∼10-15 m above the Intra-debris Reflector that presumably represents an induced weak layer that developed during failure. Free gas accumulates beneath some regions of the landslide and is widespread deeper in the sedimentary sequence, suggesting that free gas may have played a role in pre-conditioning the slope to failure. Additional pre-conditioning or failure triggers could have been seismic shaking and associated transient fluid pressure. Our study underscores the importance of detailed core-log-seismic integration approaches for investigating basal shear zone development in submarine landslides.
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    Seasonality in the relationship between equatorial-mean heat content and interannual eastern equatorial Atlantic sea surface temperature variability (2022)
    Springer
    Details
    Publication Date: 2024-02-07
    Description: Interannual sea surface temperature (SST) variations in the tropical Atlantic Ocean lead to anomalous atmospheric circulation and precipitation patterns with important ecological and socioeconomic consequences for the semiarid regions of sub-Saharan Africa and northeast Brazil. This interannual SST variability is characterized by three modes: an Atlantic meridional mode featuring an anomalous cross-equatorial SST gradient that peaks in boreal spring; an Atlantic zonal mode (Atlantic Nino mode) with SST anomalies in the eastern equatorial Atlantic cold tongue region that peaks in boreal summer; and a second zonal mode of variability with eastern equatorial SST anomalies peaking in boreal winter. Here we investigate the extent to which there is any seasonality in the relationship between equatorial warm water recharge and the development of eastern equatorial Atlantic SST anomalies. Seasonally stratified cross-correlation analysis between eastern equatorial Atlantic SST anomalies and equatorial heat content anomalies (evaluated using warm water volume and sea surface height) indicate that while equatorial heat content changes do occasionally play a role in the development of boreal summer Atlantic zonal mode events, they contribute more consistently to Atlantic Nino II, boreal winter events. Event and composite analysis of ocean adjustment with a shallow water model suggest that the warm water volume anomalies originate mainly from the off-equatorial northwestern Atlantic, in agreement with previous studies linking them to anomalous wind stress curl associated with the Atlantic meridional mode.
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  • 88
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    Differential effects of elevated p CO 2 and warming on marine phytoplankton stoichiometry (2022)
    ASLO (Association for the Sciences of Limnology and Oceanography) | Wiley
    Details
    Publication Date: 2024-02-07
    Description: Phytoplankton stand at the base of the marine food-web, and play a major role in global carbon cycling. Rising CO2 levels and temperatures are expected to enhance growth and alter carbon:nutrient stoichiometry of marine phytoplankton, with possible consequences for the functioning of marine food-webs and the oceanic carbon pump. To date, however, the consistency of phytoplankton stoichiometric responses remains unclear. We therefore performed a meta-analysis on data from experimental studies on stoichiometric responses of marine phytoplankton to elevated pCO2 and 3–5° warming under nutrient replete and limited conditions. Our results demonstrate that elevated pCO2 increased overall phytoplankton C:N (by 4%) and C:P (by 9%) molar ratios under nutrient replete conditions, as well as phytoplankton growth rates (by 6%). Nutrient limitation amplified the CO2 effect on C:N and C:P ratios, with increases to 27% and 17%, respectively. In contrast to elevated pCO2, warming did not consistently alter phytoplankton elemental composition. This could be attributed to species- and study-specific increases and decreases in stoichiometry in response to warming. While our observed moderate CO2-driven changes in stoichiometry are not likely to drive marked changes in food web functioning, they are in the same order of magnitude as current and projected estimations of oceanic carbon export. Therefore, our results may indicate a stoichiometric compensation mechanism for reduced oceanic carbon export due to declining primary production in the near future
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    Isotopic characterization of water masses in the Southeast Pacific region: Paleoceanographic implications (2022)
    AGU (American Geophysical Union) | Wiley
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    Publication Date: 2024-02-07
    Description: In this study, we used stable isotopes of oxygen (δ18O), deuterium (δD), and dissolved inorganic carbon (δ13CDIC) in combination with temperature, salinity, oxygen and nutrient concentrations to characterize the coastal (71-78 °W) and an oceanic (82-98 °W) water masses (SAAW-Subantarctic Surface Water; STW-Subtropical Water; ESSW-Equatorial Subsurface water; AAIW-Antarctic Intermediate Water; PDW-Pacific Deep Water) of the Southeast Pacific (SEP). The results show that δ18O and δD can be used to differentiate between SAAW-STW, SAAW-ESSW and ESSW-AAIW. δ13CDIC signatures can be used to differentiate between STW-ESSW (oceanic section), SAAW-ESSW, ESSW-AAIW and AAIW-PDW. Compared with the oceanic section, our new coastal section highlights differences in both the chemistry and geometry of water masses above 1000 m. Previous paleoceanographic studies using marine sediments from the SEP continental margin used the present-day hydrological oceanic transect to compare against, as the coastal section was not sufficiently characterized. We suggest that our new results of the coastal section should be used for past characterizations of the SEP water masses that are usually based on continental margin sediment samples.
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    Fungal endophytes vary by species, tissue type, and life cycle stage in intertidal macroalgae (2022)
    Wiley
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    Publication Date: 2024-02-07
    Description: Whereas fungal symbionts of terrestrial plants are among the most widespread and well-studied symbioses, relatively little is known about fungi that are associated with macroalgae. To fill the gap in marine fungal taxonomy, we combined simple culture methods with amplicon sequencing to characterize the fungal communities associated with three brown (Sargassum muticum, Pelvetia canaliculata, Himanthalia elongata) and two red (Mastocarpus stellatus, Chondrus crispus) macroalgae from one intertidal zone. In addition to characterizing novel fungal diversity, we tested three hypotheses: fungal diversity and community composition vary (i) among species distributed at different tidal heights, (ii) among tissue types (apices, mid-thallus, and stipe), and (iii) among ‘isomorphic’ C. crispus life cycle stages. Almost 70% of our reads were classified as Ascomycota, 29% as Basidiomycota, and 1% that could not be classified to phylum. Thirty fungal isolates were obtained, 18 of which were also detected with amplicon sequencing. Fungal communities differed by host and tissue type. Interestingly, P. canaliculata, a fucoid at the extreme high intertidal, did not show differences in fungal diversity across the thallus. As found in filamentous algal endophytes, fungal diversity varied among the three life cycle stages in C. crispus. Female gametophytes were also compositionally more dispersed as compared to the less variable tetrasporophytes and male gametophytes. We demonstrate the power of combining relatively simple cultivation and sequencing approaches to characterize and study macroalgal-fungal associations and highlight the need to understand the role of fungi in near-shore marine ecosystems.
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    Spontaneously exsolved free gas during major storms as an ephemeral gas source for pockmark formation (2022)
    AGU (American Geophysical Union) | Wiley
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    Publication Date: 2024-02-07
    Description: Abrupt fluid emissions from shallow marine sediments pose a threat to seafloor installations like wind farms and offshore cables. Quantifying such fluid emissions and linking pockmarks, the seafloor manifestations of fluid escape, to flow in the sub-seafloor remains notoriously difficult due to an incomplete understanding of the underlying physical processes. Here, using a compositional multi-phase flow model, we test plausible gas sources for pockmarks in the south-eastern North Sea, which recent observations suggest have formed in response to major storms. We find that the mobilization of pre-existing gas pockets is unlikely because free gas, due to its high compressibility, damps the propagation of storm-induced pressure changes deeper into the subsurface. Rather, our results point to spontaneous appearance of a free gas phase via storm-induced gas exsolution from pore fluids. This mechanism is primarily driven by the pressure-sensitivity of gas solubility, and the appearance of free gas is largely confined to sediments in the vicinity of the seafloor. We show that in highly permeable sediments containing gas-rich pore fluids, wave-induced pressure changes result in the appearance of a persistent gas phase. This suggests that seafloor fluid escape structures are not always proxies for overpressured shallow gas and that periodic seafloor pressure changes can induce persistent free gas phase to spontaneously appear. Key Points - Storm-induced pressure changes can lead to spontaneous appearance of free gas phase near the seafloor - This process is driven by pressure-sensitive phase instabilities - This mechanism could help explain elusive gas sources in recently observed pockmarks in the North Sea
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    Controls of the Foreland Deformation Pattern in the Orogen‐Foreland Shortening System: Constraints From High‐Resolution Geodynamic Models (2022)
    AGU (American Geophysical Union) | Wiley
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    Publication Date: 2024-02-07
    Description: Controls on the deformation pattern (shortening mode and tectonic style) of orogenic forelands during lithospheric shortening remain poorly understood. Here, we use high-resolution 2D thermomechanical models to demonstrate that orogenic crustal thickness and foreland lithospheric thickness significantly control the shortening mode in the foreland. Pure-shear shortening occurs when the orogenic crust is not thicker than the foreland crust or thick, but the foreland lithosphere is thin (〈70–80 km, as in the Puna foreland case). Conversely, simple-shear shortening, characterized by foreland underthrusting beneath the orogen, arises when the orogenic crust is much thicker. This thickened crust results in high gravitational potential energy in the orogen, which triggers the migration of deformation to the foreland under further shortening. Our models present fully thick-skinned, fully thin-skinned, and intermediate tectonic styles in the foreland. The first tectonics forms in a pure-shear shortening mode whereas the others require a simple-shear mode and the presence of thick (〉∼4 km) sediments that are mechanically weak (friction coefficient 〈∼0.05) or weakened rapidly during deformation. The formation of fully thin-skinned tectonics in thick and weak foreland sediments, as in the Subandean Ranges, requires the strength of the orogenic upper lithosphere to be less than one-third as strong as that of the foreland upper lithosphere. Our models successfully reproduce foreland deformation patterns in the Central and Southern Andes and the Laramide province.
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    Net‐Zero CO 2 Germany - A Retrospect From the Year 2050 (2022)
    AGU (American Geophysical Union) | Wiley
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    Publication Date: 2024-02-07
    Description: Germany 2050: For the first time Germany reached a balance between its sources of anthropogenic CO2 to the atmosphere and newly created anthropogenic sinks. This backcasting study presents a fictional future in which this goal was achieved by avoiding (∼645 Mt CO2), reducing (∼50 Mt CO2) and removing (∼60 Mt CO2) carbon emissions. This meant substantial transformation of the energy system, increasing energy efficiency, sector coupling, and electrification, energy storage solutions including synthetic energy carriers, sector-specific solutions for industry, transport, and agriculture, as well as natural-sink enhancement and technological carbon dioxide options. All of the above was necessary to achieve a net-zero CO2 system for Germany by 2050.
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    Food web structure and intraguild predation affect ecosystem functioning in an established plankton model (2022)
    ASLO (Association for the Sciences of Limnology and Oceanography) | Wiley
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    Publication Date: 2024-02-07
    Description: Understanding how marine microbial food webs and their ecosystem functions are changing is crucial for projections of the future ocean. Often, simplified food web models are employed and their solutions are only evaluated against available observations of plankton biomass. With such an approach, it remains unclear how different underlying trophic interactions affect interpretations of plankton dynamics and functioning. Here, we quantitatively compare four hypothetical food webs to data from an existing mesocosm experiment using a refined version of the Minimum Microbial Food Web model. Food web representations range from separated food chains to complex food webs featuring additional trophic links including intraguild predation (IGP). Optimization against observations and taking into account model complexity ensures a fair comparison of the different food webs. Although the different optimized model food webs capture the observations similarly well, projected ecosystem functions differ depending on the underlying food web structure and the presence or absence of IGP. Mesh-like food webs dominated by the microbial loop yield higher recycling and net primary production (NPP) than models dominated by the classical diatom-copepod food chain. A high degree of microzooplankton IGP increases NPP and organic matter recycling, but decreases trophic transfer efficiency (TTE) to copepods. Copepod production, the trophic role of copepods, and TTE are more sensitive to initial biomass changes in chain-like than in complex food webs. Measurements resolving trophic interactions, in particular those quantifying IGP, remain essential to reduce model uncertainty and allow sound conclusions for ecosystem functioning in plankton ecosystems.
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    Biogeochemical feedbacks may amplify ongoing and future ocean deoxygenation: a case study from the Peruvian oxygen minimum zone (2022)
    Springer
    Details
    Publication Date: 2024-02-07
    Description: A new box model is employed to simulate the oxygen-dependent cycling of nutrients in the Peruvian oxygen minimum zone (OMZ). Model results and data for the present state of the OMZ indicate that dissolved iron is the limiting nutrient for primary production and is provided by the release of dissolved ferrous iron from shelf and slope sediments. Most of the removal of reactive nitrogen occurs by anaerobic oxidation of ammonium where ammonium is delivered by aerobic organic nitrogen degradation. Model experiments simulating the effects of ocean deoxygenation and warming show that the productivity of the Peruvian OMZ will increase due to the enhanced release of dissolved iron from shelf and slope sediments. A positive feedback loop rooted in the oxygen-dependent benthic iron release amplifies, both, the productivity rise and oxygen decline in ambient bottom waters. Hence, a 1% decline in oxygen supply reduces oxygen concentrations in sub-surface waters of the continental margin by 22%. The trend towards enhanced productivity and amplified deoxygenation will continue until further phytoplankton growth is limited by the loss of reactive nitrogen. Under nitrogen-limitation, the redox state of the OMZ is stabilized by negative feedbacks. A further increase in productivity and transition to sulfidic conditions is only possible if the rate of nitrogen fixation increases drastically under anoxic conditions. Such a transition would lead to a wide-spread accumulation of toxic sulfide with detrimental consequences for fishery yields in the Peruvian OMZ that currently provides a significant fraction of the global fish catch.
    Type: Article , PeerReviewed
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  • 96
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    Insights Into Exhumation and Mantle Hydration Processes at the Deep Galicia Margin From a 3D High‐Resolution Seismic Velocity Model (2022)
    AGU (American Geophysical Union) | Wiley
    Details
    Publication Date: 2024-02-07
    Description: High-resolution velocity models developed using full-waveform inversion (FWI) can image fine details of the nature and structure of the subsurface. Using a 3D FWI velocity model of hyper-thinned crust at the Deep Galicia Margin (DGM) west of Iberia, we constrain the nature of the crust at this margin by comparing its velocity structure with those in other similar tectonic settings. Velocities representative of both the upper and lower continental crust are present, but there is no clear evidence for distinct upper and lower crustal layers within the hyper-thinned crust. Our velocity model supports exhumation of the lower crust under the footwalls of fault blocks to accommodate the extension. We used our model to generate a serpentinization map for the uppermost mantle at the DGM, at a depth of 100 ms (∼340 m) below the S-reflector, a low-angle detachment that marks the base of the crust at this margin. We find a good alignment between serpentinized areas and the overlying major block bounding faults on our map, suggesting that those faults played an important role in transporting water to the upper mantle. Further, we observe a weak correlation between fault heaves and serpentinization beneath the hanging-wall blocks, indicating that serpentinization was controlled by complex faulting during rifting. A good match between topographic highs of the S and local highly serpentinized areas of the mantle suggests that the morphology of the S was affected by the volume-increasing process of serpentinization and deformation of the overlying crust. Key Points Exhumation of the lower crust under the footwall of the normal faults to accommodate extension Overlying faults in the crust control water transport to the mantle Topography of the S-reflector is affected by the serpentinization process and deformations of the overlying crust
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  • 97
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    Organic matter availability drives the spatial variation in the community composition and activity of Antarctic marine bacterioplankton (2022)
    Society for Applied Microbiology | Wiley
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    Publication Date: 2024-02-07
    Description: Carbon cycling by Antarctic microbial plankton is poorly understood but it plays a major role in CO2 sequestration in the Southern Ocean. We investigated the summer bacterioplankton community in the largely understudied Weddell Sea, applying Illumina amplicon sequencing, measurements of bacterial production and chemical analyses of organic matter. The results revealed that the patchy distribution of productive coastal polynyas and less productive, mostly ice-covered sites was the major driver of the spatial changes in the taxonomic composition and activity of bacterioplankton. Gradients in organic matter availability induced by phytoplankton blooms were reflected in the concentrations and composition of dissolved carbohydrates and proteins. Bacterial production at bloom stations was, on average, 2.7 times higher than at less productive sites. Abundant bloom-responsive lineages were predominately affiliated with ubiquitous marine taxa, including Polaribacter, Yoonia-Loktanella, Sulfitobacter, the SAR92 clade, and Ulvibacter, suggesting a widespread genetic potential for adaptation to sub-zero seawater temperatures. A co-occurrence network analysis showed that dominant taxa at stations with low phytoplankton productivity were highly connected, indicating beneficial interactions. Overall, our study demonstrates that heterotrophic bacterial communities along Weddell Sea ice shelves were primarily constrained by the availability of labile organic matter rather than low seawater temperature.
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  • 98
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    Active Silica Diagenesis in the Deepest Hadal Trench Sediments (2022)
    AGU (American Geophysical Union) | Wiley
    Details
    Publication Date: 2024-02-07
    Description: Porewater dissolved silicic acid (DSi) concentrations and stable Si isotope compositions (δ30Si) together with biogenic silica (bSiO2) contents of sediments in five sediment cores collected from the southern Mariana Trench are presented. These data suggest the occurrence of bSiO2 dissolution and concomitant authigenic clay formation in three bSiO2-bearing cores. A reaction-transport model constrained by the measured geochemical data was applied to quantify the rates of Si turnover. Model results predicted the greatest rates of both bSiO2 dissolution and authigenic clay formation at the trench axis core that displayed low bSiO2 contents and abundant detrital materials, suggesting that detrital materials may be a limiting factor for bSiO2 diagenesis. Model results further predicted that ∼40%–70% of DSi generated by bSiO2 dissolution is consumed by authigenic clay formation. This is the first study that demonstrates active silica diagenesis in the hadal realm and has implications for understanding benthic Si cycling in deep-sea settings. Key Points - Biogenic silica diagenesis was examined for the first time in hadal trench sediments - Availability of detrital materials may be a limiting factor for biogenic silica (bSiO2) diagenesis in bSiO2-rich sediments of the Mariana Trench - ∼40%–80% of dissolved silicic acid generated by bSiO2 dissolution is fixed by authigenic silicate formation
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  • 99
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    Understanding communities’ perceptions, demographics and uses of wetlands in Vhembe Biosphere Reserve, South Africa (2022)
    Springer
    Details
    Publication Date: 2024-02-07
    Description: Wetlands are amongst the world’s most important ecosystems, providing direct and indirect benefits to local communities. However, wetlands worldwide continue to be degraded due to unsustainable use and improper resource management. In this paper, we assess the perceptions, importance, management and utilisation of wetlands among local community members using a household questionnaire and field observations within the seven Thulamela municipality wetlands, Vhembe Biosphere Reserve in South Africa. Seven wetlands were chosen for the study, with 140 household respondents randomly selected for a questionnaire survey. The study indicated that wetlands were beneficial in supporting local communities through resource provisioning. The unemployment rate and household respondents’ income were the main contributors to increased wetland dependency and utilisation. We found that urban and rural developments, unregulated use and extensive agricultural practices (i.e., cultivation, livestock grazing) have resulted in wetland degradation. We observed that the local communities around the wetlands were interested in the benefits they receive from wetlands when compared to their conservation. Furthermore, the study observed poor wetland co-management or collaboration among the local stakeholders. This has resulted in a lack of openly known, active platforms to discuss wetlands management issues. These results highlight that centralized, top–down approaches to wetland use are insufficient for maintaining and managing wetland ecosystems, posing a challenge to sustainable wetland management. Therefore, there is a need to develop a shared understanding through bottom-up approaches to wetland management nested within national regulatory frameworks, ideally combined with awareness building and knowledge sharing on ecological benefits and management of wetlands.
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    World Atlas of Submarine Gas Hydrates in Continental Margins (2022)
    Springer
    Details
    Publication Date: 2024-02-07
    Description: This world atlas presents a comprehensive overview of the gas-hydrate systems of our planet with contributions from esteemed international researchers from academia, governmental institutions and hydrocarbon industries. The book illustrates, describes and discusses gas hydrate systems, their geophysical evidence and their future prospects for climate change and continental margin geohazards from passive to active margins. This includes passive volcanic to non-volcanic margins including glaciated and non-glaciated margins from high to low latitudes. Shallow submarine gas hydrates allow a glimpse into the past from the Last Glacial Maximum (LGM) to modern environmental conditions to predict potential changes in future stability conditions while deep submarine gas hydrates remained more stable. This demonstrates their potential for rapid reactions for some gas hydrate provinces to a warming world, as well as helping to identify future prospects for environmental research. Three-dimensional and high-resolution seismic imaging technologies provide new insights into fluid flow systems in continental margins, enabling the identification of gas and gas escape routes to the seabed within gas hydrate environments, where seabed habitats may flourish. The volume contains a method section detailing the seismic imaging and logging while drilling techniques used to characterize gas hydrates and related dynamic processes in the sub seabed. This book is unique, as it goes well beyond the geophysical monograph series of natural gas hydrates and textbooks on marine geophysics. It also emphasizes the potential for gas hydrate research across a variety of disciplines. Observations of bottom simulating reflectors (BSRs) in 2D and 3D seismic reflection data combined with velocity analysis, electromagnetic investigations and gas-hydrate stability zone (GHSZ) modelling, provide the necessary insights for academic interests and hydrocarbon industries to understand the potential extent and volume of gas hydrates in a wide range of tectonic settings of continental margins. Gas hydrates control the largest and most dynamic reservoir of global carbon. Especially 4D, 3D seismic but also 2D seismic data provide compelling sub-seabed images of their dynamical behavior. Sub-seabed imaging techniques increase our understanding of the controlling mechanisms for the distribution and migration of gas before it enters the gas-hydrate stability zone. As methane hydrate stability depends mainly on pressure, temperature, gas composition and pore water chemistry, gas hydrates are usually found in ocean margin settings where water depth is more than 300 m and gas migrates upward from deeper geological formations. This highly dynamic environment may precondition the stability of continental slopes as evidenced by geohazards and gas expelled from the sea floor. This book provides new insights into variations in the character and existence of gas hydrates and BSRs in various geological environments, as well as their dynamics. The potentially dynamic behavior of this natural carbon system in a warming world, its current and future impacts on a variety of Earth environments can now be adequately evaluated by using the information provided in the world atlas.
    Type: Book , NonPeerReviewed
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