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  • Condensed Matter: Electronic Properties, etc.  (674)
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  • 11
    Publikationsdatum: 2021-05-19
    Beschreibung: The aim of the present study was the genetic analysis of the Dniester population of sterlet Acipenser ruthenus and comparison of it to five other sterlet populations, in order to develop a population recovery plan. The genetic analysis of six sterlet populations from Eurasian rivers (Dniester, Dnieper, Danube, Volga, Kama and Ob) was carried out using microsatellite DNA markers. The genetic variation and genetic distance between studied populations were evaluated. Significant genetic differentiation was detected between the analyzed populations through the pairwise genetic differentiation index (Fst) test. The DA measure of genetic distance between pairs of populations indicated that the shortest genetic distance (in relation to the Dniester population) was between the Dniester and the Dnieper populations (0.184). The results obtained represent a starting point of sterlet conservation program in Dniester River.
    Beschreibung: Published
    Schlagwort(e): Genetics ; Acipenser ruthenus ; Aquaculture ; Genetic analysis ; Microsatellite DNA ; Restitution ; Populations
    Repository-Name: AquaDocs
    Materialart: Journal Contribution , Refereed
    Format: pp.634-645
    Standort Signatur Erwartet Verfügbarkeit
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  • 12
    Publikationsdatum: 2021-05-19
    Beschreibung: This study reports on the molecular identification of fish species from processed products which had a priori been classified as belonging to 5 important species in Iran for human consumption. DNA barcoding using direct sequencing of an approximately 650bp of mitochondrial Cytochrome oxidase subunit I (COI) gene revealed incorrect labeling of Narrow-barred Spanish mackerel samples. High occurrence of fraudulent fishery products, if left unchecked, can pose a negative impact on the economy. This investigation adds further concern on the trading of processed fish products in Iran from both health and conservation points of view.
    Beschreibung: Published
    Schlagwort(e): Genetics ; Food traceability ; Forensic genetics ; DNA barcoding ; Fish product ; Species ; Identification
    Repository-Name: AquaDocs
    Materialart: Journal Contribution , Refereed
    Format: pp.783-791
    Standort Signatur Erwartet Verfügbarkeit
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  • 13
    Publikationsdatum: 2021-05-19
    Beschreibung: Use of different pesticides in the agriculture sector, in order to boost crop yield within a short time period and low labor, has been tremendously increased since the last decade. Pesticide use has elevated crop yield but has produced a number of pronounced problems regarding environmental and health safety. The continuously deteriorating toxicological effects of these pesticides are not only hazardous to humans and land animals but also to economically important aquatic organisms such as fish. One of these extensively used pesticides is an organochlorine insecticide, endosulfan. Experiments conducted in the past have shown the deleterious effects of endosulfan on different aspects of various fish species but its genetic toxicity has not been well studied. The present study was conducted to diagnose the DNA damage induced by endosulfan in peripheral blood erythrocytes of an economically important teleost fish rohu, Labeo rohita (Hamilton, 1822) using comet assay. The fish were exposed to three different sub lethal concentrations (1, 1.5 and 2 µg L-1) of endosulfan for 7, 14, 21 and 28 days. Rohu showed different extents of DNA damage at different concentrations and time, in terms of genetic damage index (GDI), percentage of damaged cells (% damaged cell) and cumulative tail length (µm) of the comets. Increase in DNA damage was observed to be concentration and time-dependent. The current study revealed the severe genotoxic effects of endosulfan in rohu, Labeo rohita. Therefore its discriminate use should be avoided as it can contribute to the decline of rohu in natural habitats. Also it should be considered as a hazardous threat for human consumption.
    Beschreibung: Published
    Schlagwort(e): Genetics ; Endosulfan ; DNA damage ; Erythrocyte ; Comet assay ; Rohu
    Repository-Name: AquaDocs
    Materialart: Journal Contribution , Refereed
    Format: pp.138-149
    Standort Signatur Erwartet Verfügbarkeit
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  • 14
    Publikationsdatum: 2021-05-19
    Beschreibung: In order to have a sustainable management on Persian sturgeon as a highly commercial species in the South Caspian Sea, we need to identify its population structure and the level as well as its conservation status in their natural habitat. To develop a conservation program for this all Caspian Sea' sturgeon species it requires knowledge of its genetic diversity using reliable molecular marker to study population genetic structure. For these purposes, an enriched library was prepared based on a modified biotin-capture method. Approximately 1800 positive clones were screened for microsatellites in an Acipenser persicus genomic library. Of these 350 positively hybridizing clones were sequenced, and 81 clones were identified as having microsatellites with adequate flanking regions. We developed and tested 68 microsatellite primer pairs for Persian sturgeon. Out of 68 primer pairs developed, 11 pairs resulted in poor or no amplification, 13 were ambiguous, 6 were monomorphic, 20 were tetrasomic and 18 were octosomic in Persian sturgeon. While none of the markers showed disomic inheritance in Persian sturgeon and Russian sturgeon (A. gueldenstaedtii). Several of the markers appeared useful for studies stellate sturgeon (A. stellatus), ship sturgeon (A.nudiventris) and beluga (Huso huso). Nearly all the polymorphic pattern for ship, stellate and beluga displayed the simple banding patterns characteristic of disomic loci, while those for Russian sturgeon displayed banding patterns characteristic of tetraploid or higher polyploid levels. These markers may prove useful in a variety of future sturgeon population genetic studies in the Caspian Sea.
    Beschreibung: Published
    Schlagwort(e): Russian sturgeon ; A. gueldenstaedtii ; Persian sturgeon ; Acipenser persicus ; Caspian Sea ; Microsatellite ; Population genetic ; Genetics ; Population ; Structure ; Species
    Repository-Name: AquaDocs
    Materialart: Journal Contribution , Refereed
    Format: pp.548-558
    Standort Signatur Erwartet Verfügbarkeit
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  • 15
    Publikationsdatum: 2021-05-19
    Beschreibung: Genetic diversity of six populations of bartail flathead (Platycephalus indicus Linnaeus, 1758) was investigated using amplified fragment length polymorphism (AFLP). A total of 118 reproducible bands amplified with ten AFLP primer combinations were obtained from 42 fishes that were collected from six different locations in the northern part of the Persian Gulf. The percentage of polymorphic bands was 57.06%. Nei’s genetic diversity was 0.1808±0.2074 - 0.2164±0.1903, and Shannon’s index was 0.2675±0.2949 - 0.3280±0.2727. The results of AMOVA analysis indicated that 66% and 34% of the genetic variation occurred within and among the populations and gene flow was 0.6454. The estimated level of population differentiation as measured by average Fst value across all loci was 0.327. Analyses revealed significant genetic differentiation with low gene flow among the six locations, indicating at least six separate populations of bartail flathead in the northern part of the Persian Gulf.
    Beschreibung: Published
    Schlagwort(e): Genetics ; Genetic diversity ; Bartail flathead. ; Platycephalus indicus ; AFLP ; Genetic ; Populations ; Fish
    Repository-Name: AquaDocs
    Materialart: Journal Contribution , Refereed
    Format: pp.924-936
    Standort Signatur Erwartet Verfügbarkeit
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  • 16
    Publikationsdatum: 2021-05-19
    Beschreibung: The present study was carried out during 2006-2007 along the southern Caspian Sea. The species composition showed that the common kilka, Clupeonella cultriventris caspia, is dominant species with 89% and then anchovy, C. engrauliformis, has shown only 8.7% while it was already dominant species in the past decades. The overall results indicated that common kilka was replaced with anchovy kilka as previous dominant kilka species due to invasion of Mnemiopsis leidyi to the southern Caspian Sea. Anchovy suffered greatly from M. leidyi so that the total catch dropped from 95000 mt in 1999 to less than 20000 mt in 2007. In our survey, 1415 fish specimens were collected randomly, including 221 anchovy, 281 bigeye and 913 common kilka. The mean length of anchovy was 117.8 ± 0.27 mm, while it was about 93.0 mm during 1995 to 1998 before the invasion of M. leidyi. Analysis of age classes indicated the mean age of 4.5 ± 0.04 years for anchovy, 3.6 ± 0.03 for common kilka and 4.6 ± 0.08 for big eye C. grimmi. According to the age and the length structure of the specimens in this study, it could be concluded that in recent years, young fish population of anchovy has been decreased in comparison with the last decade. The results showed that some biological characteristics of kilka population were affected by M. leidyi. Recently fishing activities take place in shallow waters where schools of kilka are in suitable density for fishing. According to our results, ctenophore occupied the anchovy habitat where it was mainly more than 50 m depth. The fishing has moved to areas with depths less than 50 meters where it was the main reason to change in species composition.
    Beschreibung: Published
    Schlagwort(e): Age structure ; Clupeonella ; Species composition ; Mnemiopsis leidyi ; Genetics
    Repository-Name: AquaDocs
    Materialart: Journal Contribution , Refereed
    Format: pp.559-569
    Standort Signatur Erwartet Verfügbarkeit
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  • 17
    Publikationsdatum: 2021-05-19
    Beschreibung: Black pomfret Parastromateus niger is a commercially important fishery resource in the Persian Gulf but harvesting its stocks lacks genetic identification of populations. AFLP technique was applied to analyze genetic diversity and population structure of 32 fish from coastal waters of Bandar Abbas, Bushehr and Abadan with 7 EcoRI/MseI primer pair combinations. In total, 381 bands were produced of which, 46 were polymorphic (12.07%). Percentage of polymorphic bands was higher in Bushehr samples (91.30%) than in Abadan (84.78%) and Bandar Abbas (73.91%) samples. The highest level of heterozygosity based on Nei’s coefficient and Shannon’s index was observed in Bushehr fish (0.38±0.16 and 0.54±0.21). Observed and effective alleles ranged from 1.73±0.44 and 1.53±0.40 in Bandar Abbas samples to 1.91±0.28 and 1.70±0.34 in Bushehr samples. The average Fst was 0.19 indicating high genetic differentiation among the three locations. Gene flow with mean of 1.93 was the lowest level between Bandar Abbas and Abadan (1.24). Nei's genetic identity revealed the least genetic similarity between the samples of Bandar Abbas and Abadan (0.77). AMOVA analysis demonstrated 81% of the genetic variation within populations and 19% among populations. The UPGMA dendrogram clustered all 32 individuals into 3 groups. In some cases individuals from the same region were grouped together but in most cases, gene exchange was observed to be common among the groups. Analyses provided evidence for genetic differentiation among the three locations, indicating separate populations of black pomfret in the northern Persian Gulf.
    Beschreibung: Published
    Schlagwort(e): Genetics ; Black pomfret ; Parastromateus niger ; AFLP molecular markers ; Population structure ; Genetic ; Populations
    Repository-Name: AquaDocs
    Materialart: Journal Contribution , Refereed
    Format: pp.857-875
    Standort Signatur Erwartet Verfügbarkeit
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  • 18
    Publikationsdatum: 2021-05-19
    Beschreibung: Esox lucius is an economically important freshwater species. Mitochondrial cytb, 12SrRNA, and 16SrRNA gene sequences were used in order to clarify the genetic variation and population structure in three E. Lucius populations, i.e., one Wild population (W) and two hatchery populations (Hatchery Population I-HPI and Hatchery Population II-HPII). A total of 55 individuals, with 19 from wild and 18 from each hatchery population, were sequenced. The results are as follows: 1) cytb. Eleven variable sites defined eight distinct haplotypes, with 1137 base pairs (bp) complete cytb sequences. The nucleotide diversity (π) values were W 0.009%, HPI 0.075% and HPII 0.068%, respectively. Genetic distances within and between populations were both between 0 and 0.1%. Analysis of molecular variance (AMOVA) analysis revealed that variation within populations accounts for 98.49% of total variation. 2) 12SrRNA. We obtained 380 bp consensus 12SrRNA sequence and found little variation among the 55 sequences. 3) 16SrRNA. Twelve variable sites defined seven haplotypes, with 519 bp consensus 16SrRNA sequence. The π values were W 0.041%, HPI 0.310% and HPII 0.021%, respectively. Genetic distances were between 0 and 0.3% within populations and from 0 to 0.2% between populations. AMOVA disclosed that variation within populations accounts for 91.79% of total variation. Variation within populations is the main source of total variation. The results suggest that low genetic variation can be found in both wild and hatchery populations of E. lucius, and the effect of genetic drift and adaptation to culture conditions gradually emerged under only two generations’ artificial cultivation.
    Beschreibung: Published
    Schlagwort(e): Genetics ; Northern pike ; Esox lucius ; Mitochondrial DNA ; Genetic diversity ; Genetic variability ; Hatchery ; Populations
    Repository-Name: AquaDocs
    Materialart: Journal Contribution , Refereed
    Format: pp.792-801
    Standort Signatur Erwartet Verfügbarkeit
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  • 19
    Publikationsdatum: 2021-05-19
    Beschreibung: The effects of starvation and subsequent re-feeding on compensatory growth performance, blood serum metabolites and IGF-ImRNA expression in liver and muscle were investigated in juvenile Persian sturgeon. Growth indices including body weight, SGR, CF, and HSI significantly decreased after starvation. However, after re-feeding sturgeons that were starved for 1 week reached the same weight as the control, indicating that complete compensatory growth had occurred. Conversely, sturgeon in longer periods of starvation showed only partial growth compensation. HSI values decreased significantly during starvation, although they returned to the control fish levels after re-feeding. Plasma levels of glucose and insulin during starvation and re-feeding did not significantly change. This suggests that sturgeon is able to maintain glycaemia during starvation, probably due to their non-carbohydrates source dietary. Plasma total lipid level in un-fed treatments, however, was found to increase, possibly as a mechanism to utilise lipids as a fuel during starvation. IGF-I mRNA expression in liver and muscle increased during starvation and decreased after re-feeding. However, changes in the IGF-ImRNA expression were not significantly different among treatments. These results indicate that a periodic short-term starvation in Persian sturgeon does not adversely sacrifice overall fish weight gain and sturgeon can realise compensatory growth.
    Beschreibung: Published
    Schlagwort(e): Genetics ; Acipenser persicus ; Persian sturgeon ; Feeding regime ; Compensatory growth ; Blood metabolite ; Plasma ; Dietary
    Repository-Name: AquaDocs
    Materialart: Journal Contribution , Refereed
    Format: pp.465-483
    Standort Signatur Erwartet Verfügbarkeit
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  • 20
    Publikationsdatum: 2021-05-19
    Beschreibung: A Gram-negative, rod-shaped, motile and halophilic bacterium identified as Vibrio harveyi was isolated from hatchery-reared larval of Iran Shrimp Research Centerfollowing mass mortality . Seven isolates of Vibrio spp.were collected from nauplii of Litopenaeus vannamei and then were evaluated for characteristics including morphology, physiology and biochemistry. The results indicated that the isolates belonged to a single species that grew on Thiosulfate citrate- Bile Sucrose agar and in 1.5 to 6% NaCl, positive lysine and ornithine decarboxylation and susceptible to O/129 disk. Identification of Vibrio harveyi strainIS01 (1 of 7 isolates) was confirmed by Polymerase Chain Reaction assay for Vibrio harveyi (expected amplicon 1493 bp). The 16S ribosomal DNA sequence (National Center for Biotechnology Information, GenBank accession number GU974342.1) gave 99% sequence identity to V. harveyi ATCC: 35084 (GenBank accession number EU130475.1).
    Beschreibung: Published
    Schlagwort(e): Genetics ; Vibriosis ; Shrimp diseases ; Litopenaeus vannamei ; 16S rDNA sequencing ; Molecular
    Repository-Name: AquaDocs
    Materialart: Journal Contribution , Refereed
    Format: pp.384-393
    Standort Signatur Erwartet Verfügbarkeit
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