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  • Articles  (66,492)
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  • 1
    Publication Date: 2017-08-30
    Description: Predicting future thaw slump activity requires a sound understanding of the atmospheric drivers and geomorphic controls on mass wasting across a range of time scales. On sub-seasonal time scales, sparse measurements indicate that mass wasting at active slumps is often limited by the energy available for melting ground ice, but other factors such as rainfall or the formation of an insulating veneer may also be relevant. To study the sub-seasonal drivers, we derive topographic changes from single-pass radar interferometric data acquired by the TanDEM-X satellite (12 m resolution). The high vertical precision (around 30 cm), frequent observations (11 days) and large coverage (5000 km2) allow us to track volume losses as drivers such as the available energy change during summer in two study regions. We find that thaw slumps in the Tuktoyaktuk coastlands, Canada, are not energy limited in June, as they undergo limited mass wasting (height loss of around 0 cm/day) despite the ample available energy, indicating the widespread presence of an insulating snow or debris veneer. Later in summer, height losses generally increase (around 3 cm/day), but they do so in distinct ways. For many slumps, mass wasting tracks the available energy, a temporal pattern that is also observed at coastal yedoma cliffs on the Bykovsky Peninsula, Russia. However, the other two common temporal trajectories are asynchronous with the available energy, as they track strong precipitation events or show a sudden speed-up in late August, respectively. The observed temporal patterns are poorly related to slump characteristics like the slump area. The contrasting temporal behaviour of nearby thaw slumps highlights the importance of complex local and temporally varying controls on mass wasting.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , notRev , info:eu-repo/semantics/article
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  • 2
    Publication Date: 2017-11-06
    Description: A suite of oxygenated volatile organic compounds (OVOCs – acetaldehyde, acetone, propanal, butanal and butanone) were measured concurrently in the surface water and atmosphere of the South China Sea and Sulu Sea in November 2011. A strong correlation was observed between all OVOC concentrations in the surface seawater along the entire cruise track, except for acetaldehyde, suggesting similar sources and sinks in the surface ocean. Additionally, several phytoplankton groups, such as haptophytes or pelagophytes, were also correlated to all OVOCs indicating that phytoplankton may be an important source for marine OVOCs in the South China and Sulu Seas. Humic and protein like fluorescent dissolved organic matter (FDOM) components seemed to be additional precursors for butanone and acetaldehyde. The atmospheric OVOC mixing ratios were relative high compared with literature values, suggesting the coastal region of North Borneo as a local hot spot for atmospheric OVOCs. The flux of atmospheric OVOCs was largely into the ocean for all 5 gases, with a few important exceptions near the coast of Borneo. The calculated amount of OVOCs entrained into the ocean seemed to be an important source of OVOCs to the surface ocean. When the fluxes were out of the ocean, marine OVOCs were found to be enough to control the local measured OVOC distribution in the atmosphere. Based on our model calculations, at least 0.4 ppb of marine derived acetone and butanone can reach the upper troposphere, where they may have an important influence on hydrogen oxide radical formation over the western Pacific Ocean.
    Repository Name: EPIC Alfred Wegener Institut
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  • 3
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    Copernicus
    In:  EPIC3Geoscientific Model Development, Copernicus, 11, pp. 753-769
    Publication Date: 2018-03-28
    Description: The Extrapolar SWIFT model is a fast ozone chemistry scheme for interactive calculation of the extrapolar stratospheric ozone layer in coupled general circulation models (GCMs). In contrast to the widely used prescribed ozone, the SWIFT ozone layer interacts with the model dynamics and can respond to atmospheric variability or climatological trends. The Extrapolar SWIFT model employs a repro-modelling approach, where algebraic functions are used to approximate the numerical output of a full stratospheric chemistry and transport model (ATLAS). The full model solves a coupled chemical differential equations system with 55 initial and boundary conditions (mixing ratio of various chemical species and atmospheric parameters). Hence the rate of change of ozone over 24  h is a function of 55 variables. Using covariances between these variables, we can find linear combinations in order to reduce the parameter space to the following nine basic variables: latitude, pressure altitude, temperature, local ozone column, mixing ratio of ozone and of the ozone depleting families (Cly, Bry, NOy and HOy). We will show that these 9 variables are sufficient to characterize the rate of change of ozone. An automated procedure fits a polynomial function of fourth degree to the rate of change of ozone obtained from several simulations with the ATLAS model. One polynomial function is determined per month which yields the rate of change of ozone over 24 h. A key aspect for the robustness of the Extrapolar SWIFT model is to include a wide range of stratospheric variability in the numerical output of the ATLAS model, also covering atmospheric states that will occur in a future climate (e.g. temperature and meridional circulation changes or reduction of stratospheric chlorine loading). For validation purposes, the Extrapolar SWIFT model has been integrated into the ATLAS model replacing the full stratospheric chemistry scheme. Simulations with SWIFT in ATLAS have proven that the systematic error is small and does not accumulate during the course of a simulation. In the context of a 10 year simulation, the ozone layer, simulated by SWIFT, shows a stable annual cycle, with inter-annual variations comparable to the ATLAS model. The application of Extrapolar SWIFT requires the evaluation of polynomial functions with 30–100 terms. Nowadays, computers can calculate such polynomial functions at thousands of model grid points in seconds. SWIFT provides the desired numerical efficiency and computes the ozone layer 104 times faster than the chemistry scheme in the ATLAS CTM.
    Repository Name: EPIC Alfred Wegener Institut
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  • 4
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    Copernicus
    In:  EPIC3The Cryosphere, Copernicus, 11(5), pp. 2383-2391
    Publication Date: 2017-10-24
    Description: Ice retreat in the eastern Eurasian Arctic is a consequence of atmospheric and oceanic processes and regional feedback mechanisms acting on the ice cover, both in winter and summer. A correct representation of these processes in numerical models is important, since it will improve predictions of sea ice anomalies along the Northeast Passage and beyond. In this study, we highlight the importance of winter ice dynamics for local summer sea ice anomalies in thickness, volume and extent. By means of airborne sea ice thickness surveys made over pack ice areas in the south-eastern Laptev Sea, we show that years of offshore-directed sea ice transport have a thinning effect on the late-winter sea ice cover. To confirm the preconditioning effect of enhanced offshore advection in late winter on the summer sea ice cover, we perform a sensitivity study using a numerical model. Results verify that the preconditioning effect plays a bigger role for the regional ice extent. Furthermore, they indicate an increase in volume export from the Laptev Sea as a consequence of enhanced offshore advection, which has far-reaching consequences for the entire Arctic sea ice mass balance. Moreover we show that ice dynamics in winter not only preconditions local summer ice extent, but also accelerate fast-ice decay.
    Repository Name: EPIC Alfred Wegener Institut
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  • 5
    Publication Date: 2017-12-19
    Description: Climate trends in the Antarctic region remain poorly characterized, owing to the brevity and scarcity of direct climate observations and the large magnitude of interannual to decadal-scale climate variability. Here, within the framework of the PAGES Antarctica2k working group, we build an enlarged database of ice core water stable isotope records from Antarctica, consisting of 112 records. We produce both unweighted and weighted isotopic (δ18O) composites and temperature reconstructions since 0 CE, binned at 5- and 10-year resolution, for seven climatically distinct regions covering the Antarctic continent. Following earlier work of the Antarctica2k working group, we also produce composites and reconstructions for the broader regions of East Antarctica, West Antarctica and the whole continent. We use three methods for our temperature reconstructions: (i) a temperature scaling based on the δ18O–temperature relationship output from an ECHAM5-wiso model simulation nudged to ERA-Interim atmospheric reanalyses from 1979 to 2013, and adjusted for the West Antarctic Ice Sheet region to borehole temperature data, (ii) a temperature scaling of the isotopic normalized anomalies to the variance of the regional reanalysis temperature and (iii) a composite-plus-scaling approach used in a previous continent-scale reconstruction of Antarctic temperature since 1 CE but applied to the new Antarctic ice core database. Our new reconstructions confirm a significant cooling trend from 0 to 1900 CE across all Antarctic regions where records extend back into the 1st millennium, with the exception of the Wilkes Land coast and Weddell Sea coast regions. Within this long-term cooling trend from 0 to 1900 CE, we find that the warmest period occurs between 300 and 1000 CE, and the coldest interval occurs from 1200 to 1900 CE. Since 1900 CE, significant warming trends are identified for the West Antarctic Ice Sheet, the Dronning Maud Land coast and the Antarctic Peninsula regions, and these trends are robust across the distribution of records that contribute to the unweighted isotopic composites and also significant in the weighted temperature reconstructions. Only for the Antarctic Peninsula is this most recent century-scale trend unusual in the context of natural variability over the last 2000 years. However, projected warming of the Antarctic continent during the 21st century may soon see significant and unusual warming develop across other parts of the Antarctic continent. The extended Antarctica2k ice core isotope database developed by this working group opens up many avenues for developing a deeper understanding of the response of Antarctic climate to natural and anthropogenic climate forcings. The first long-term quantification of regional climate in Antarctica presented herein is a basis for data–model comparison and assessments of past, present and future driving factors of Antarctic climate.
    Repository Name: EPIC Alfred Wegener Institut
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  • 6
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 8 (2017): 882, doi:10.3389/fmicb.2017.00882.
    Description: Spatial and temporal patterns in microbial biodiversity across the Amazon river-ocean continuum were investigated along ∼675 km of the lower Amazon River mainstem, in the Tapajós River tributary, and in the plume and coastal ocean during low and high river discharge using amplicon sequencing of 16S rRNA genes in whole water and size-fractionated samples (0.2–2.0 μm and 〉2.0 μm). River communities varied among tributaries, but mainstem communities were spatially homogeneous and tracked seasonal changes in river discharge and co-varying factors. Co-occurrence network analysis identified strongly interconnected river assemblages during high (May) and low (December) discharge periods, and weakly interconnected transitional assemblages in September, suggesting that this system supports two seasonal microbial communities linked to river discharge. In contrast, plume communities showed little seasonal differences and instead varied spatially tracking salinity. However, salinity explained only a small fraction of community variability, and plume communities in blooms of diatom-diazotroph assemblages were strikingly different than those in other high salinity plume samples. This suggests that while salinity physically structures plumes through buoyancy and mixing, the composition of plume-specific communities is controlled by other factors including nutrients, phytoplankton community composition, and dissolved organic matter chemistry. Co-occurrence networks identified interconnected assemblages associated with the highly productive low salinity near-shore region, diatom-diazotroph blooms, and the plume edge region, and weakly interconnected assemblages in high salinity regions. This suggests that the plume supports a transitional community influenced by immigration of ocean bacteria from the plume edge, and by species sorting as these communities adapt to local environmental conditions. Few studies have explored patterns of microbial diversity in tropical rivers and coastal oceans. Comparison of Amazon continuum microbial communities to those from temperate and arctic systems suggest that river discharge and salinity are master variables structuring a range of environmental conditions that control bacterial communities across the river-ocean continuum.
    Description: This research is funded by the Gordon and Betty Moore Foundation (GBMF 2293 and 2928), the U.S. National Science Foundation (OCE-0934095, OCE-0424602, DEB-1256724), and the São Paulo Research Foundation (FAPESP 12/51187-0).
    Keywords: Amazon River ; Tropical Atlantic Ocean ; River plume ; Microbial diversity ; Freshwater bacteria ; Marine bacteria ; Diatom-diazotroph assemblage ; Columbia River
    Repository Name: Woods Hole Open Access Server
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  • 7
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 8 (2017): 1496, doi:10.3389/fmicb.2017.01496.
    Description: Synechococcus are ubiquitous and cosmopolitan cyanobacteria that play important roles in global productivity and biogeochemical cycles. This study investigated the fine scale microdiversity, seasonal patterns, and spatial distributions of Synechococcus in estuarine waters of Little Sippewissett salt marsh (LSM) on Cape Cod, MA. The proportion of Synechococcus reads was higher in the summer than winter, and higher in coastal waters than within the estuary. Variations in the V4–V6 region of the bacterial 16S rRNA gene revealed 12 unique Synechococcus oligotypes. Two distinct communities emerged in early and late summer, each comprising a different set of statistically co-occurring Synechococcus oligotypes from different clades. The early summer community included clades I and IV, which correlated with lower temperature and higher dissolved oxygen levels. The late summer community included clades CB5, I, IV, and VI, which correlated with higher temperatures and higher salinity levels. Four rare oligotypes occurred in the late summer community, and their relative abundances more strongly correlated with high salinity than did other co-occurring oligotypes. The analysis revealed that multiple, closely related oligotypes comprised certain abundant clades (e.g., clade 1 in the early summer and clade CB5 in the late summer), but the correlations between these oligotypes varied from pair to pair, suggesting they had slightly different niches despite being closely related at the clade level. Lack of tidal water exchange between sampling stations gave rise to a unique oligotype not abundant at other locations in the estuary, suggesting physical isolation plays a role in generating additional microdiversity within the community. Together, these results contribute to our understanding of the environmental and ecological factors that influence patterns of Synechococcus microbial community composition over space and time in salt marsh estuarine waters.
    Description: This work was supported through a subcontract from the Woods Hole Center for Oceans and Human Health, from the National Institutes of Health and the National Science Foundation (NIH/NIEHS 1 P50 ES012742-01 and NSF/OCE 0430724), a National Research Council Research Associateship Award and L'Oreal USA Fellowship (JH), an Alfred P. Sloan Research Fellowship in Ocean Sciences and the Clare Boothe Luce Program (KM), NASA Astrobiology Institute Cooperative Agreement NNA04CC04A (MS), the Alfred P. Sloan Foundation's ICoMM field project, and the W. M. Keck Foundation.
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  • 8
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 4 (2017): 337, doi:10.3389/fmars.2017.00337.
    Description: The fishery for American lobster is currently the highest-valued commercial fishery in the United States, worth over US$620 million in dockside value in 2015. During a marine heat wave in 2012, the fishery was disrupted by the early warming of spring ocean temperatures and subsequent influx of lobster landings. This situation resulted in a price collapse, as the supply chain was not prepared for the early and abundant landings of lobsters. Motivated by this series of events, we have developed a forecast of when the Maine (USA) lobster fishery will shift into its high volume summer landings period. The forecast uses a regression approach to relate spring ocean temperatures derived from four NERACOOS buoys along the coast of Maine to the start day of the high landings period of the fishery. Tested against conditions in past years, the forecast is able to predict the start day to within 1 week of the actual start, and the forecast can be issued 3–4 months prior to the onset of the high-landings period, providing valuable lead-time for the fishery and its associated supply chain to prepare for the upcoming season. Forecast results are conveyed in a probabilistic manner and are updated weekly over a 6-week forecasting period so that users can assess the certainty and consistency of the forecast and factor the uncertainty into their use of the information in a given year. By focusing on the timing of events, this type of seasonal forecast provides climate-relevant information to users at time scales that are meaningful for operational decisions. As climate change alters seasonal phenology and reduces the reliability of past experience as a guide for future expectations, this type of forecast can enable fishing industry participants to better adjust to and prepare for operating in the context of climate change.
    Description: This forecast was initiated with support from NSF Coastal SEES (OCE 1325484) and was developed with funds from NASA EPSCoR through Maine Space Grant Consortium (EP-15-03).
    Keywords: Seasonal forecast ; Temperature ; Fishery landings ; Lobster fishery ; Climate variability
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  • 9
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 8 (2017): 264, doi:10.3389/fmicb.2017.00264.
    Description: The occurrence of bacteria in the food processing environments plays a key role in food contamination and development of spoilage. Species of the genus Pseudomonas are recognized as major food spoilers and the capability to actually determine spoilage can be species- as well as strain-dependent. In order to improve the taxonomic resolution of 16S rRNA gene amplicons, in this study we used oligotyping to investigate the diversity of Pseudomonas populations in meat and dairy processing environments. Sequences of the V1–V3 regions from previous studies were used, including environmental swabs and food samples from both meat and dairy processing plants. We showed that the most frequently found oligotypes belonged to Pseudomonas fragi and P. fluorescens, that the most abundant oligotypes co-occurred, and were shared between the meat and dairy datasets. All the oligotypes occurring in foods were also identified in the environmental samples of the corresponding plants, highlighting the important role of the environment as a source of strains for food contamination. Oligotypes of the same species showed different levels depending on food processing and type of sample, suggesting that different strains of the same species can have different adaptation efficiency, leading to resilient bacterial associations.
    Keywords: Pseudomonas fragi ; Food contamination ; Food processing environment ; Oligotyping ; 16S rRNA gene sequencing
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  • 10
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 4 (2017): 109, doi:10.3389/fmars.2017.00109.
    Description: Assessment of underwater noise is of particular interest given the increase in noise-generating human activities and the potential negative effects on marine mammals which depend on sound for many vital processes. The Azores archipelago is an important migratory and feeding habitat for blue (Balaenoptera musculus), fin (Balaenoptera physalus) and sei whales (Balaenoptera borealis) en route to summering grounds in northern Atlantic waters. High levels of low frequency noise in this area could displace whales or interfere with foraging behavior, impacting energy intake during a critical stage of their annual cycle. In this study, bottom-mounted Ecological Acoustic Recorders were deployed at three Azorean seamounts (Condor, Açores, and Gigante) to measure temporal variations in background noise levels and ship noise in the 18–1,000 Hz frequency band, used by baleen whales to emit and receive sounds. Monthly average noise levels ranged from 90.3 dB re 1 μPa (Açores seamount) to 103.1 dB re 1 μPa (Condor seamount) and local ship noise was present up to 13% of the recording time in Condor. At this location, average contribution of local boat noise to background noise levels is almost 10 dB higher than wind contribution, which might temporally affect detection ranges for baleen whale calls and difficult communication at long ranges. Given the low time percentatge with noise levels above 120 dB re 1 μPa found here (3.3% at Condor), we woud expect limited behavioral responses to ships from baleen whales. Sound pressure levels measured in the Azores are lower than those reported for the Mediterranean basin and the Strait of Gibraltar. However, the currently unknown effects of baleen whale vocalization masking and the increasing presence of boats at the monitored sites underline the need for continuous monitoring to understand any long-term impacts on whales.
    Description: Fundação para a Ciência e a Tecnologia (FCT) and Fundo Regional da Ciência e Tecnologia (FRCT), through research projects TRACE (PTDC/MAR/74071/2006), MAPCET (M2.1.2/F/012/2011), and FCT Exploratory project (IF/00943/2013/CP1199/CT0001), supported by funds from FEDER, the Competitiveness Factors Operational (COMPETE), QREN, POPH, European Social Fund, Portuguese Ministry for Science and Education, and Proconvergencia Açores/EU Program. We also acknowledge funds provided by FCT to MARE, through the strategic project UID/MAR/04292/2013, that also supported fees for this open access publication. MR is supported by a DRCT doctoral grant (M3.1.a/F/028/2015), IC was supported by a FCT doctoral grant (SFRH/BD/41192/2007) and MAS is supported by an FCT-Investigator contract (IF/00943/2013).
    Keywords: Underwater noise ; Ship noise ; Baleen whales ; MSFD ; Open ocean environment
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  • 11
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 8 (2017): 682, doi:10.3389/fmicb.2017.00682.
    Description: The Epsilonproteobacteria is the fifth validly described class of the phylum Proteobacteria, known primarily for clinical relevance and for chemolithotrophy in various terrestrial and marine environments, including deep-sea hydrothermal vents. As 16S rRNA gene repositories have expanded and protein marker analysis become more common, the phylogenetic placement of this class has become less certain. A number of recent analyses of the bacterial tree of life using both 16S rRNA and concatenated marker gene analyses have failed to recover the Epsilonproteobacteria as monophyletic with all other classes of Proteobacteria. In order to address this issue, we investigated the phylogenetic placement of this class in the bacterial domain using 16S and 23S rRNA genes, as well as 120 single-copy marker proteins. Single- and concatenated-marker trees were created using a data set of 4,170 bacterial representatives, including 98 Epsilonproteobacteria. Phylogenies were inferred under a variety of tree building methods, with sequential jackknifing of outgroup phyla to ensure robustness of phylogenetic affiliations under differing combinations of bacterial genomes. Based on the assessment of nearly 300 phylogenetic tree topologies, we conclude that the continued inclusion of Epsilonproteobacteria within the Proteobacteria is not warranted, and that this group should be reassigned to a novel phylum for which we propose the name Epsilonbacteraeota (phyl. nov.). We further recommend the reclassification of the order Desulfurellales (Deltaproteobacteria) to a novel class within this phylum and a number of subordinate changes to ensure consistency with the genome-based phylogeny. Phylogenomic analysis of 658 genomes belonging to the newly proposed Epsilonbacteraeota suggests that the ancestor of this phylum was an autotrophic, motile, thermophilic chemolithotroph that likely assimilated nitrogen from ammonium taken up from the environment or generated from environmental nitrate and nitrite by employing a variety of functional redox modules. The emergence of chemoorganoheterotrophic lifestyles in several Epsilonbacteraeota families is the result of multiple independent losses of various ancestral chemolithoautotrophic pathways. Our proposed reclassification of this group resolves an important anomaly in bacterial systematics and ensures that the taxonomy of Proteobacteria remains robust, specifically as genome-based taxonomies become more common.
    Description: The study was supported by a Discovery Outstanding Researcher Award (DP120103498) and an Australian Laureate Fellowship (FL150100038) from the Australian Research Council.
    Keywords: Epsilonproteobacteria ; Taxonomy ; Classification ; Genome ; Phylogenomics ; Epsilonbacteraeota ; Evolution
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  • 12
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 4 (2017): 334, doi:10.3389/fmars.2017.00334.
    Description: Scattering structures, including deep (〉200 m) scattering layers are common in most oceans, but have not previously been properly documented in the Arctic Ocean. In this work, we combine acoustic data for distribution and abundance estimation of zooplankton and fish with biological sampling from the region west and north of Svalbard, to examine high latitude meso- and epipelagic scattering layers and their biological constituents. Our results show that typically, there was strong patchy scattering in the upper part of the epipelagic zone (〈50 m) throughout the area. It was mainly dominated by copepods, krill, and amphipods in addition to 0-group fish that were particularly abundant west of the Spitsbergen Archipelago. Off-shelf there was a distinct deep scattering layer (DSL) between 250 and 600 m containing a range of larger longer lived organisms (mesopelagic fish and macrozooplankton). In eastern Fram Strait, the DSL also included and was in fact dominated by larger fish close to the shelf/slope break that were associated with Warm Atlantic Water moving north toward the Arctic Ocean, but switched to dominance by species having weaker scattering signatures further offshore. The Weighted Mean Depths of the DSL were deeper (WMD 〉 440 m) in the Arctic habitat north of Svalbard compared to those south in the Fram Strait west of Svalbard (WMD ~400 m). The surface integrated backscatter [Nautical Area-Scattering Coefficient, NASC, sA (m2 nmi−2)] was considerably lower in the waters around Svalbard compared to the more southern regions (62–69°N). Also, the integrated DSL nautical area scattering coefficient was a factor of ~6–10 lower around Svalbard compared to the areas in the south-eastern part of the Norwegian Sea ~62°30′N. The documented patterns and structures, particularly the DSL and its constituents, will be key reference points for understanding and quantifying future changes in the pelagic ecosystem at the entrance to the Arctic Ocean.
    Description: The Research Council of Norway is thanked for the financial support through the projects “The Arctic Ocean Ecosystem”—(SI_ARCTIC, RCN 228896), the “Effects of climate change on the Calanus complex”—(ECCO, RCN 200508), “Harvesting marine cold water plankton species—abundance estimation and stock assessment”—(Harvest II, RCN 203871) as well as the Institute of Marine Research, Bergen.
    Keywords: Arctic ; Bioacoustics ; Scattering layers ; Fish ; Micronekton ; Zooplankton ; Svalbard
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  • 13
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 12 (2017): e0173350, doi:10.1371/journal.pone.0173350.
    Description: Scleractinian coral are experiencing unprecedented rates of mortality due to increases in sea surface temperatures in response to global climate change. Some coral species however, survive high temperature events due to a reduced susceptibility to bleaching. We investigated the relationship between bleaching susceptibility and expression of five metabolically related genes of Symbiodinium spp. from the coral Porites astreoides originating from an inshore and offshore reef in the Florida Keys. The acclimatization potential of Symbiodinium spp. to changing temperature regimes was also measured via a two-year reciprocal transplant between the sites. Offshore coral fragments displayed significantly higher expression in Symbiodinium spp. genes PCNA, SCP2, G3PDH, PCP and psaE than their inshore counterparts (p〈0.05), a pattern consistent with increased bleaching susceptibility in offshore corals. Additionally, gene expression patterns in Symbiodinium spp. from site of origin were conserved throughout the two-year reciprocal transplant, indicating acclimatization did not occur within this multi-season time frame. Further, laboratory experiments were used to investigate the influence of acute high temperature (32°C for eight hours) and disease (lipopolysaccharide of Serratia marcescens) on the five metabolically related symbiont genes from the same offshore and inshore P. astreoides fragments. Gene expression did not differ between reef fragments, or as a consequence of acute exposure to heat or heat and disease, contrasting to results found in the field. Gene expression reported here indicates functional variation in populations of Symbiodinium spp. associated with P. astreoides in the Florida Keys, and is likely a result of localized adaptation. However, gene expression patterns observed in the lab imply that functional variation in zooxanthellae observed under conditions of chronic moderate stress is lost under the acute extreme conditions studied here.
    Description: Funding for this research was provided by Coastal Preservation network (KBS, BHS).
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  • 14
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 12 (2017): e0179318, doi: 10.1371/journal.pone.0179318.
    Description: Trace metals are essential for health but toxic when present in excess. The maintenance of trace metals at physiologic levels reflects both import and export by cells and absorption and excretion by organs. The mechanism by which this maintenance is achieved in vertebrate organisms is incompletely understood. To explore this, we chose zebrafish as our model organism, as they are amenable to both pharmacologic and genetic manipulation and comprise an ideal system for genetic screens and toxicological studies. To characterize trace metal content in developing zebrafish, we measured levels of three trace elements, copper, zinc, and manganese, from the oocyte stage to 30 days post-fertilization using inductively coupled plasma mass spectrometry. Our results indicate that metal levels are stable until zebrafish can acquire metals from the environment and imply that the early embryo relies on maternal contribution of metals to the oocyte. We also measured metal levels in bodies and yolks of embryos reared in presence and absence of the copper chelator neocuproine. All three metals exhibited different relative abundances between yolks and bodies of embryos. While neocuproine treatment led to an expected phenotype of copper deficiency, total copper levels were unaffected, indicating that measurement of total metal levels does not equate with measurement of biologically active metal levels. Overall, our data not only can be used in the design and execution of genetic, physiologic, and toxicologic studies but also has implications for the understanding of vertebrate metal homeostasis.
    Description: This work was supported by the National Institutes of Health, R00 DK84122.
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  • 15
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 8 (2017): 1786, doi:10.3389/fmicb.2017.01786.
    Description: Semi-labile dissolved organic matter (DOM) accumulates in surface waters of the oligotrophic ocean gyres and turns over on seasonal to annual timescales. This reservoir of DOM represents an important source of carbon, energy, and nutrients to marine microbial communities but the identity of the microorganisms and the biochemical pathways underlying the cycling of DOM remain largely uncharacterized. In this study we describe bacteria isolated from the North Pacific Subtropical Gyre (NPSG) near Hawaii that are able to degrade phosphonates associated with high molecular weight dissolved organic matter (HMWDOM), which represents a large fraction of semi-labile DOM. We amended dilution-to-extinction cultures with HMWDOM collected from NPSG surface waters and with purified HMWDOM enriched with polysaccharides bearing alkylphosphonate esters. The HMWDOM-amended cultures were enriched in Roseobacter isolates closely related to Sulfitobacter and close relatives of hydrocarbon-degrading bacteria of the Oceanospirillaceae family, many of which encoded phosphonate degradation pathways. Sulfitobacter cultures encoding C-P lyase were able to catabolize methylphosphonate and 2-hydroxyethylphosphonate, as well as the esters of these phosphonates found in native HMWDOM polysaccharides to acquire phosphorus while producing methane and ethylene, respectively. Conversely, growth of these isolates on HMWDOM polysaccharides as carbon source did not support robust increases in cell yields, suggesting that the constituent carbohydrates in HMWDOM were not readily available to these individual isolates. We postulate that the complete remineralization of HMWDOM polysaccharides requires more complex microbial inter-species interactions. The degradation of phosphonate esters and other common substitutions in marine polysaccharides may be key steps in the turnover of marine DOM.
    Description: Financial support for this work was provided by the National Science Foundation Center for Microbial Oceanography: Research and Education (award #EF0424599 to DK and ED), the National Science Foundation HOT program (OCE-1260164 to M. J. Church and DK), the Gordon and Betty Moore Foundation (grants #492.01 and #3777 to ED, #3298 to DR, and #3794 to DK), and the Simons Foundation (award ID 329108 to DK, DR, and ED). Additional support was provided by the Agouron Institute through a fellowship to OS.
    Keywords: Bacterial degradation ; Dissolved organic matter (DOM) ; Phosphonate metabolism ; C-P lyase ; Methane ; Ethylene ; Oligotrophic conditions
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  • 16
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 8 (2017): 702, doi:10.3389/fmicb.2017.00702.
    Description: The unique geochemistry of marine shallow-water hydrothermal systems promotes the establishment of diverse microbial communities with a range of metabolic pathways. In contrast to deep-sea vents, shallow-water vents not only support chemosynthesis, but also phototrophic primary production due to the availability of light. However, comprehensive studies targeting the predominant biogeochemical processes are rare, and consequently a holistic understanding of the functioning of these ecosystems is currently lacking. To this end, we combined stable isotope probing of lipid biomarkers with an analysis of the bacterial communities to investigate if chemoautotrophy, in parallel to photoautotrophy, plays an important role in autotrophic carbon fixation and to identify the key players. The study was carried out at a marine shallow-water hydrothermal system located at 5 m water depth off Dominica Island (Lesser Antilles), characterized by up to 55°C warm hydrothermal fluids that contain high amounts of dissolved Fe2+. Analysis of the bacterial diversity revealed Anaerolineae of the Chloroflexi as the most abundant bacterial class. Furthermore, the presence of key players involved in iron cycling generally known from deep-sea hydrothermal vents (e.g., Zetaproteobacteria and Geothermobacter), supported the importance of iron-driven redox processes in this hydrothermal system. Uptake of 13C-bicarbonate into bacterial fatty acids under light and dark conditions revealed active photo- and chemoautotrophic communities, with chemoautotrophy accounting for up to 65% of the observed autotrophic carbon fixation. Relatively increased 13C-incorporation in the dark allowed the classification of aiC15:0, C15:0, and iC16:0 as potential lipid biomarkers for bacterial chemoautotrophy in this ecosystem. Highest total 13C-incorporation into fatty acids took place at the sediment surface, but chemosynthesis was found to be active down to 8 cm sediment depth. In conclusion, this study highlights the relative importance of chemoautotrophy compared to photoautotrophy in a shallow-water hydrothermal system, emphasizing chemosynthesis as a prominent process for biomass production in marine coastal environments influenced by hydrothermalism.
    Description: SS was supported by NSF grant OCE-1124272. This work was financed through the DFG Emmy Noether Grant BU 2606/1-1 to SB.
    Keywords: Chemoautotrophy ; Marine shallow-water hydrothermal systems ; Lipid biomarker ; Stable isotope probing (SIP) ; Fatty acids ; Dominica (Lesser Antilles) ; Zetaproteobacteria ; Geothermobacter
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  • 17
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 2 (2016): 118, doi:10.3389/fmars.2015.00118.
    Description: Characterization of dissolved organic matter (DOM) in terms of its composition and optical properties, with an eye toward ultimately understanding its deep ocean dynamics, is the currently active frontier in DOM research. We used UV-visible absorption spectroscopy and fluorescence excitation-emission matrix (EEM) spectroscopy to characterize DOM in the open ocean along sections of the U.S. CO2/CLIVAR Repeat Hydrography Project located in all the major ocean basins outside the Arctic. Despite large differences in fluorescence intensity between ocean basins, some variability patterns were similar throughout the global ocean, suggesting similar processes controlling the composition of the DOM. We find that commercially available single channel CDOM sensors are sensitive to the fluorescence of humic materials in the deep ocean and thermocline but not to the UVA-fluorescing and absorbing materials that characterize freshly produced CDOM in surface waters, revealing fundamental diversity in the DOM profile. In surface waters, UVA fluorescence and absorption signatures indicate the presence of freshly produced material and the process of bleaching removal, but in the upper mesopelagic and in the main thermocline these optical signatures are replaced by those of humic materials, with distribution patterns correlated to apparent oxygen utilization (AOU) and other signatures of remineralization. Empirical orthogonal function analysis (EOF) of the EEM data suggests the presence of two (unidentified) processes which convert “fresh” DOM to humic materials: one located in the surface ocean (shallower than 500 m) and one located in the main thermocline. These inferred humification processes represent less than 5% of the overall variability in oceanic humic DOM fluorescence, which appears to be dominated by terrestrial input and solar bleaching of humic materials.
    Description: This research was supported by grants from NASA (grants NAG5-13277 and NNX14AG24G) and NSF (OCE-0241614 and OCE-0648541) to NN and D. A. Siegel.
    Keywords: CDOM ; FDOM ; Humic material ; Oceanic CDOM cycling ; Fluorescence analysis
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  • 18
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 3 (2016): 27, doi:10.3389/fmars.2016.00027.
    Description: The distributions of dissolved iron and organic iron-binding ligands were examined in water column profiles and deckboard incubation experiments in the southern California Current System (sCCS) along a transition from coastal to semi-oligotrophic waters. Analysis of the iron-binding ligand pool by competitive ligand exchange-adsorptive cathodic stripping voltammetry (CLE-ACSV) using multiple analytical windows (MAWs) revealed three classes of iron-binding ligands present throughout the water column (L1−L3), whose distributions closely matched those of dissolved iron and nitrate. Despite significant biogeochemical gradients, ligand profiles were similar between stations, with surface minima in strong ligands (L1 and L2), and relatively constant concentrations of weaker ligands (L3) down to 500 m. A phytoplankton grow-out incubation, initiated from an iron-limited water mass, showed dynamic temporal cycling of iron-binding ligands. A biological iron model was able to capture the patterns of the strong ligands in the grow-out incubation relatively well with only the microbial community as a biological source. An experiment focused on remineralization of particulate organic matter showed production of both strong and weak iron-binding ligands by the heterotrophic community, supporting a mechanism for in-situ production of both strong and weak iron-binding ligands in the subsurface water column. Photochemical experiments showed a variable influence of sunlight on the degradation of natural iron-binding ligands, providing some evidence to explain differences in surface ligand concentrations between stations. Patterns in ligand distributions between profiles and in the incubation experiments were primarily related to macronutrient concentrations, suggesting microbial remineralization processes might dominate on longer time-scales over short-term changes associated with photochemistry or phytoplankton growth.
    Description: RB, KB, and MC were supported by NSF OCE #10-2667 for the CCE-LTER program. MJ was funded by NSF ANT grant 0948378 and Harbor Branch Oceanographic Institute Foundation.
    Keywords: California Current Ecosystem ; Long term ecological research ; Iron limitation ; Dissolved iron-binding ligands ; Multiple analytical windows ; Electrochemistry
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  • 19
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Earth Science 4 (2016): 77, doi:10.3389/feart.2016.00077.
    Description: Arctic deltas are dynamic and vulnerable regions that play a key role in land-ocean interactions and the global carbon cycle. Delta lakes may provide valuable historical records of the quality and quantity of fluvial fluxes, parameters that are challenging to investigate in these remote regions. Here we study lakes from across the Mackenzie Delta, Arctic Canada, that receive fluvial sediments from the Mackenzie River when spring flood water levels rise above natural levees. We compare downcore lake sediments with suspended sediments collected during the spring flood, using bulk (% organic carbon, % total nitrogen, δ13C, Δ14C) and molecular organic geochemistry (lignin, leaf waxes). High-resolution age models (137Cs, 210Pb) of downcore lake sediment records (n = 11) along with lamina counting on high-resolution radiographs show sediment deposition frequencies ranging between annually to every 15 years. Down-core geochemical variability in a representative delta lake sediment core is consistent with historical variability in spring flood hydrology (variability in peak discharge, ice jamming, peak water levels). Comparison with earlier published Mackenzie River depth profiles shows that (i) lake sediments reflect the riverine surface suspended load, and (ii) hydrodynamic sorting patterns related to spring flood characteristics are reflected in the lake sediments. Bulk and molecular geochemistry of suspended particulate matter from the spring flood peak and lake sediments are relatively similar showing a mixture of modern higher-plant derived material, older terrestrial permafrost material, and old rock-derived material. This suggests that deltaic lake sedimentary records hold great promise as recorders of past (century-scale) riverine fluxes and may prove instrumental in shedding light on past behavior of arctic rivers, as well as how they respond to a changing climate.
    Description: Funding was provided by the US National Science Foundation as part of the Arctic Great Rivers Observatory (NSF-0732522 and NSF-1107774), as well as the Netherlands Organization for Scientific Research (Rubicon #825.10.022, and Veni #863.12.004). Additional funding for the lake coring was provided from WHOI through its Ocean and Climate Change Institute.
    Keywords: Lignin ; Biomarkers ; Mackenzie River ; Carbon isotopes ; Lake sediments
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  • 20
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 3 (2016): 22, doi:10.3389/fmars.2016.00022.
    Description: Ocean ecosystems play a critical role in the Earth's carbon cycle and the quantification of their impacts for both present conditions and for predictions into the future remains one of the greatest challenges in oceanography. The goal of the EXport Processes in the Ocean from Remote Sensing (EXPORTS) Science Plan is to develop a predictive understanding of the export and fate of global ocean net primary production (NPP) and its implications for present and future climates. The achievement of this goal requires a quantification of the mechanisms that control the export of carbon from the euphotic zone as well as its fate in the underlying “twilight zone” where some fraction of exported carbon will be sequestered in the ocean's interior on time scales of months to millennia. Here we present a measurement/synthesis/modeling framework aimed at quantifying the fates of upper ocean NPP and its impacts on the global carbon cycle based upon the EXPORTS Science Plan. The proposed approach will diagnose relationships among the ecological, biogeochemical, and physical oceanographic processes that control carbon cycling across a range of ecosystem and carbon cycling states leading to advances in satellite diagnostic and numerical prognostic models. To collect these data, a combination of ship and robotic field sampling, satellite remote sensing, and numerical modeling is proposed which enables the sampling of the many pathways of NPP export and fates. This coordinated, process-oriented approach has the potential to foster new insights on ocean carbon cycling that maximizes its societal relevance through the achievement of research goals of many international research agencies and will be a key step toward our understanding of the Earth as an integrated system.
    Description: The development of the EXPORTS Science Plan was supported by NASA Ocean Biology and Biogeochemistry program (award NNX13AC35G).
    Keywords: Satellite remote sensing ; Field campain ; Science plan ; Ocean carbon cycling ; Biological pump
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  • 21
    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 12 (2017): e0184849, doi:10.1371/journal.pone.0184849.
    Description: Diatoms are important components of marine ecosystems and contribute greatly to the world's primary production. Despite their important roles in ecosystems, the molecular basis of how diatoms cope with oxidative stress caused by nutrient fluctuations remains largely unknown. Here, an isobaric tags for relative and absolute quantitation (iTRAQ) proteomic method was coupled with a series of physiological and biochemical techniques to explore oxidative stress- and cell fate decision-related cellular and metabolic responses of the diatom Thalassiosira pseudonana to nitrate (N) and inorganic phosphate (P) stresses. A total of 1151 proteins were detected; 122 and 56 were significantly differentially expressed from control under N- and P-limited conditions, respectively. In N-limited cells, responsive proteins were related to reactive oxygen species (ROS) accumulation, oxidative stress responses and cell death, corresponding to a significant decrease in photosynthetic efficiency, marked intracellular ROS accumulation, and caspase-mediated programmed cell death activation. None of these responses were identified in P-limited cells; however, a significant up-regulation of alkaline phosphatase proteins was observed, which could be the major contributor for P-limited cells to cope with ambient P deficiency. These findings demonstrate that fundamentally different metabolic responses and cellular regulations are employed by the diatom in response to different nutrient stresses and to keep the cells viable.
    Description: This study was funded by the National Natural Science Foundation of China (41576138, 41076080, 41576138) to Dr. Jun-Rong Liang; the Woods Hole Center for Oceans and Human Health, National Science Foundation (OCE-1314642) to Dr. DonaldM Anderson; the National Institute of Environmental Health Sciences (1-P01-ES021923- 01) to Dr. DonaldM Anderson; and the ERC Advanced Award Diatomite and ANR project DiaDomOil to Dr. Chris Bowler.
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  • 22
    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 8 (2017): 2117, doi:10.3389/fmicb.2017.02117.
    Description: Bacterial consumption of dissolved organic matter (DOM) drives much of the movement of carbon through the oceanic food web and the global carbon cycle. Understanding complex interactions between bacteria and marine DOM remains an important challenge. We tested the hypothesis that bacterial growth and community succession would respond differently to DOM additions due to seasonal changes in phytoplankton abundance in the environment. Four mesocosm experiments were conducted that spanned the spring transitional period (August–December 2013) in surface waters of the Western Antarctic Peninsula (WAP). Each mesocosm consisted of nearshore surface seawater (50 L) incubated in the laboratory for 10 days. The addition of DOM, in the form of cell-free exudates extracted from Thalassiosira weissflogii diatom cultures led to changes in bacterial abundance, production, and community composition. The timing of each mesocosm experiment (i.e., late winter vs. late spring) influenced the magnitude and direction of bacterial changes. For example, the same DOM treatment applied at different times during the season resulted in different levels of bacterial production and different bacterial community composition. There was a mid-season shift from Collwelliaceae to Polaribacter having the greatest relative abundance after incubation. This shift corresponded to a modest but significant increase in the initial relative abundance of Polaribacter in the nearshore seawater used to set up experiments. This finding supports a new hypothesis that starting community composition, through priority effects, influenced the trajectory of community succession in response to DOM addition. As strong inter-annual variability and long-term climate change may shift the timing of WAP phytoplankton blooms, and the corresponding production of DOM exudates, this study suggests a mechanism by which different seasonal successional patterns in bacterial communities could occur.
    Description: CL was partially funded by the Graduate School and the Department of Ecology and Evolutionary Biology at Brown University and the Brown University-Marine Biological Laboratory Joint Graduate Program. This material is based upon work supported by the National Science Foundation under Grant Nos. ANT-1142114 to LA-Z, OPP-0823101 and PLR-1440435 to HD, and ANT-1141993 to JR. The Gordon and Betty Moore Foundation grant 1711 supported work by DR.
    Keywords: 16S rRNA ; Amplicon sequencing ; Community assembly ; Bacterial succession ; Mesocosms ; Collwelliaceae ; Polaribacter ; Phytoplankton exudates
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  • 23
    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 4 (2017): 332, doi:10.3389/fmars.2017.00332.
    Description: While sound scattering layers (SSLs) have been described previously from ice-covered waters in the Arctic, the existence of a viable mesopelagic community that also includes mesopelagic fishes in the Arctic has been questioned. In addition, it has been hypothesized that vertical migration would hardly exist in these areas. We wanted to check if deep scattering layers (DSLs) was found to the west and north of Svalbard (79°30′N−82°10′N) during autumn 2015, and if present; whether organisms in such DSLs undertook vertical migrations. Our null hypothesis was that there would be no evidence of diel vertical migration. Multi-frequency acoustic observations by hull mounted echo sounder (18, 38, and 120 kHz) revealed a DSL at depths ~210–510 m in areas with bottom depths exceeding ~600 m. Investigating eight geographical locations that differed with respect to time periods, light cycle and sea ice conditions, we show that the deeper layer of DSL displayed a clear ascending movement during night time and a descending movement during daytime. The high-light weighted mean depth (WMD) (343–514 m) with respect to backscattered energy was statistically deeper than the low-light WMD (179–437 m) for the locations studied. This behavior of the DSL was found to be consistent both when the sun was continuously above the horizon and after it started to set on 1 September, and both in open water and sea ice covered waters. The WMD showed an increasing trend, while the nautical area backscattering strength from the DSL showed a decreasing trend from south to north among the studied locations. Hydrographic observations revealed that the diel migration was found in the lower part of the north-flowing Atlantic Water, and was disconnected from the surface water masses above the Atlantic Water during day and night. The organisms conducting vertical migrations were studied by vertical and oblique hauls with zooplankton nets and pelagic trawls. These data suggest that these organisms were mainly various mesopelagic fishes, some few larger fishes, large zooplankton like krill and amphipods, and various gelatinous forms.
    Description: The Research Council of Norway is thanked for the financial support through the projects “The Arctic Ocean Ecosystem” — (SI_ARCTIC, RCN 228896), the “Effects of climate change on the Calanus complex”—(ECCO, RCN 200508), “Harvesting marine cold water plankton species—abundance estimation and stock assessment”—(Harvest II, RCN 203871).
    Keywords: Arctic Ocean ; Deep scattering layer ; Diel vertical migration ; Mesopelagic organisms ; Acoustics
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  • 24
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 11 (2016): e0155049, doi:10.1371/journal.pone.0155049.
    Description: Many reefs have shifted from coral and fish dominated habitats to less productive macroalgal dominated habitats, and current research is investigating means of reversing this phase shift. In the tropical Pacific, overfished reefs with inadequate herbivory can become dominated by the brown alga Sargassum polycystum. This alga suppresses recruitment and survival of corals and fishes, thus limiting the potential for reef recovery. Here we investigate the mechanisms that reinforce S. polycystum dominance and show that in addition to negatively affecting other species, this species acts in a self-reinforcing manner, positively promoting survival and growth of conspecifics. We found that survival and growth of both recruit-sized and mature S. polycystum fronds were higher within Sargassum beds than outside the beds and these results were found in both protected and fished reefs. Much of this benefit resulted from reduced herbivory within the Sargassum beds, but adult fronds also grew ~50% more within the beds even when herbivory did not appear to be occurring, suggesting some physiological advantage despite the intraspecific crowding. Thus via positive feedbacks, S. polycystum enhances its own growth and resistance to herbivores, facilitating its dominance (perhaps also expansion) and thus its resilience on degraded reefs. This may be a key feedback mechanism suppressing the recovery of coral communities in reefs dominated by macroalgal beds.
    Description: Financial support came to MEH from the National Science Foundation (OCE 0929119), the National Institutes of Health (2 U19 TW007401-10), and the Teasley Endowment to the Georgia Institute of Technology.
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  • 25
    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 12 (2017): e0188257, doi:10.1371/journal.pone.0188257.
    Description: Preservation of three-dimensional structure in the gut is necessary in order to analyze the spatial organization of the gut microbiota and gut luminal contents. In this study, we evaluated preparation methods for mouse gut with the goal of preserving micron-scale spatial structure while performing fluorescence imaging assays. Our evaluation of embedding methods showed that commonly used media such as Tissue-Tek Optimal Cutting Temperature (OCT) compound, paraffin, and polyester waxes resulted in redistribution of luminal contents. By contrast, a hydrophilic methacrylate resin, Technovit H8100, preserved three-dimensional organization. Our mouse intestinal preparation protocol optimized using the Technovit H8100 embedding method was compatible with microbial fluorescence in situ hybridization (FISH) and other labeling techniques, including immunostaining and staining with both wheat germ agglutinin (WGA) and 4', 6-diamidino-2-phenylindole (DAPI). Mucus could be visualized whether the sample was fixed with paraformaldehyde (PFA) or with Carnoy’s fixative. The protocol optimized in this study enabled simultaneous visualization of micron-scale spatial patterns formed by microbial cells in the mouse intestines along with biogeographical landmarks such as host-derived mucus and food particles.
    Description: Funding provided by National Science Foundation (www.nsf.gov) grant 1650141 to J.L.M.W. and National Institutes of Health National Institute of Dental and Craniofacial Research (www.nidcr.nih.gov) grant DE022586 to G.G.B.
    Repository Name: Woods Hole Open Access Server
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  • 26
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 3 (2016): 1, doi:10.3389/fmars.2016.00001.
    Description: The coccolithophore Emiliania huxleyi forms massive blooms and plays a critical role in global elemental cycles, sequestering significant amounts of atmospheric carbon dioxide on geological time scales via production of calcium carbonate coccoliths and emitting dimethyl sulfoniopropionate (DMSP), which has the potential for increasing atmosph-eric albedo. Because grazing in pelagic systems is a major top-down force structuring microbial communities, the influence of grazers on E. huxleyi populations has been of interest to researchers. Roles of DMSP (and related metabolites) in interactions between E. huxleyi and protist grazers have been investigated, however, little is known about the release of other metabolites that may influence, or be influenced by, such grazing interactions. We used high-resolution mass spectrometry in an untargeted approach to survey the suite of low molecular weight compounds released by four different E. huxleyi strains in response to grazing by the dinoflagellate Oxyrrhis marina. Overall, a strikingly small number of metabolites were detected from E. huxleyi and O. marina cells, but these were distinctly informative to construct metabolic footprints. At most, E. huxleyi strains shared 25% of released metabolites. Furthermore, there appeared to be no unified metabolic response in E. huxleyi strains to grazing; rather, these responses were strain specific. Concentrations of several metabolites also positively correlated with grazer activities, including grazing, ingestion, and growth rates; however, no single metabolite responded uniformly across all strains of E. huxleyi tested. Regardless, grazing clearly transformed the constituents of dissolved organic matter produced by these marine microbes. This study addresses several technical challenges, and presents a platform to further study the influence of chemical cues in aquatic systems and demonstrates the impact of strain diversity and grazing on the complexity of dissolved organic matter in marine systems.
    Description: Funding for this work was provided by the Gordon and Betty Moore Foundation, Grant #3301 awarded to A Vardi, BAS. Van Mooy, K Bidle, MJ, and TM. Additional funding for this work was provided by an award from the Flatley Discovery Lab to TM.
    Keywords: Dissolved organic matter ; Environmental metabolomics ; Grazing ; Metabolic footprinting ; Phytoplankton
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  • 27
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 2 (2016): 202, doi:10.3389/fmars.2016.00202.
    Description: Marine spatial planning and ecological research call for high-resolution species distribution data. However, those data are still not available for most marine large vertebrates. The dynamic nature of oceanographic processes and the wide-ranging behavior of many marine vertebrates create further difficulties, as distribution data must incorporate both the spatial and temporal dimensions. Cetaceans play an essential role in structuring and maintaining marine ecosystems and face increasing threats from human activities. The Azores holds a high diversity of cetaceans but the information about spatial and temporal patterns of distribution for this marine megafauna group in the region is still very limited. To tackle this issue, we created monthly predictive cetacean distribution maps for spring and summer months, using data collected by the Azores Fisheries Observer Programme between 2004 and 2009. We then combined the individual predictive maps to obtain species richness maps for the same period. Our results reflect a great heterogeneity in distribution among species and within species among different months. This heterogeneity reflects a contrasting influence of oceanographic processes on the distribution of cetacean species. However, some persistent areas of increased species richness could also be identified from our results. We argue that policies aimed at effectively protecting cetaceans and their habitats must include the principle of dynamic ocean management coupled with other area-based management such as marine spatial planning.
    Description: This work was supported by FEDER funds, through the Competitiveness Factors Operational Programme - COMPETE, by national funds, through FCT - Foundation for Science and Technology, under project TRACE (PTDC/ MAR/74071/2006), and by regional funds, through DRCT/SRCTE, under projects MAPCET (M2.1.2/F/012/2011) and 2020 (M2.1.2/I/026/2011). We acknowledge funds provided by FCT to MARE, through the strategic project UID/MAR/04292/2013. RP is supported by an FCT postdoctoral grant (SFRH/BPD/108007/2015); MAS is supported by Program Investigator FCT (IF/00943/2013) and MT was supported by a research fellowship under the Exploratory project (IF/00943/2013/CP1199/CT0001) that also paid the fees for this open-access publication. IF/00943/2013 and IF/00943/2013/CP1199/CT0001 are funded by FSE and MCTES, through POPH and QREN.
    Keywords: Cetacean ; Spatio-temporal distribution ; Azores ; Species distribution models (SDMs) ; Richness ; MaxEnt
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  • 28
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Physiology 7 (2016): 620, doi:10.3389/fphys.2016.00620.
    Description: Vertebrates with laterally placed eyes typically exhibit preferential eye use for ecological activities such as scanning for predators or prey. Processing visual information predominately through the left or right visual field has been associated with specialized function of the left and right brain. Lateralized vertebrates often share a general pattern of lateralized brain function at the population level, whereby the left hemisphere controls routine behaviors and the right hemisphere controls emergency responses. Recent studies have shown evidence of preferential eye use in some invertebrates, but whether the visual fields are predominately associated with specific ecological activities remains untested. We used the European common cuttlefish, Sepia officinalis, to investigate whether the visual field they use is the same, or different, during anti-predatory, and predatory behavior. To test for lateralization of anti-predatory behavior, individual cuttlefish were placed in a new environment with opaque walls, thereby obliging them to choose which eye to orient away from the opaque wall to scan for potential predators (i.e., vigilant scanning). To test for lateralization of predatory behavior, individual cuttlefish were placed in the apex of an isosceles triangular arena and presented with two shrimp in opposite vertexes, thus requiring the cuttlefish to choose between attacking a prey item to the left or to the right of them. Cuttlefish were significantly more likely to favor the left visual field to scan for potential predators and the right visual field for prey attack. Moreover, individual cuttlefish that were leftward directed for vigilant scanning were predominately rightward directed for prey attack. Lateralized individuals also showed faster decision-making when presented with prey simultaneously. Cuttlefish appear to have opposite directions of lateralization for anti-predatory and predatory behavior, suggesting that there is functional specialization of each optic lobe (i.e., brain structures implicated in visual processing). These results are discussed in relation to the role of lateralized brain function and the evolution of population level lateralization.
    Description: This work was supported by a post-doctoral study grant from the Fyssen Foundation to AS, and by a research grant “Sélavie” from the Fyssen Foundation to CJ-A. The Sholley Foundation provided partial support for the research in Woods Hole.
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  • 29
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 3 (2016): 137, doi:10.3389/fmars.2016.00137.
    Keywords: Right whales ; Conservation ; Mortalities ; Entanglements ; Population recovery
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  • 30
    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 4 (2017): 105, doi:10.3389/fmars.2017.00105.
    Description: Little is still known of the impacts of protist grazing on bacterioplankton communities in the dark ocean. Furthermore, the accuracy of assessments of in situ microbial activities, including protist grazing, can be affected by sampling artifacts introduced during sample retrieval and downstream manipulations. Potential artifacts may be increased when working with deep-sea samples or samples from chemically unique water columns such as oxygen minimum zones (OMZs). OMZs are oxygen-depleted regions in the ocean, where oxygen concentrations can drop to 〈20 μM. These regions are typically located near eastern boundary upwelling systems and currently occur in waters occupying below about 8% of total ocean surface area, representing ~1% of the ocean's volume. OMZs have a profound impact not only on the distribution of marine Metazoa, but also on the composition and activities of microbial communities at the base of marine food webs. Here we present an overview of current knowledge of protist phagotrophy below the photic zone, emphasizing studies of oxygen-depleted waters and presenting results of the first attempt to implement new technology for conducting these incubation studies completely in situ (the Microbial Sampling- Submersible Incubation Device, MS-SID). We performed 24-h incubation experiments in the Eastern Tropical South Pacific (ETSP) OMZ. This preliminary study shows that up to 28% of bacterial biomass may be consumed by protists in waters where oxygen concentrations were down to ~4.8 μM and up to 13% at a station with nitrite accumulation where oxygen concentrations were undetectable. Results also show that shipboard measurements of grazing rates were lower than rates measured from the same water using the MS-SID, suggesting that in situ experiments help to minimize artifacts that may be introduced when conducting incubation studies using waters collected from below the photic zone, particularly from oxygen-depleted regions of the water column.
    Description: This work was funded by the Agouron Institute, grant AI-M010.16.1 WHO to OU, M. Sullivan, and VE, and the Millenium Science Initiative, grant IC 120019. Ship time was provided the Chilean National Commission for Scientific and Technological Research (CONICYT) grant AUB 150006/12806.
    Keywords: OMZ ; Phagotrophy ; In situ technology ; Incubation studies ; ETSP ; Eastern Tropical South Pacific OMZ
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  • 31
    Publication Date: 2022-05-26
    Description: This is an open access article, free of all copyright. The definitive version was published in PLoS ONE 12 (2017): e0172839, doi:10.1371/journal.pone.0172839.
    Description: Marine animals, such as turtles, seabirds and pelagic fishes, are observed to travel and congregate around eddies in the open ocean. Mesoscale eddies, large swirling ocean vortices with radius scales of approximately 50–100 km, provide environmental variability that can structure these populations. In this study, we investigate the use of mesoscale eddies by 24 individual juvenile loggerhead sea turtles (Caretta caretta) in the Brazil-Malvinas Confluence region. The influence of eddies on turtles is assessed by collocating the turtle trajectories to the tracks of mesoscale eddies identified in maps of sea level anomaly. Juvenile loggerhead sea turtles are significantly more likely to be located in the interiors of anticyclones in this region. The distribution of surface drifters in eddy interiors reveals no significant association with the interiors of cyclones or anticyclones, suggesting higher prevalence of turtles in anticyclones is a result of their behavior. In the southern portion of the Brazil-Malvinas Confluence region, turtle swimming speed is significantly slower in the interiors of anticyclones, when compared to the periphery, suggesting that these turtles are possibly feeding on prey items associated with anomalously low near-surface chlorophyll concentrations observed in those features.
    Description: A Woods Hole Postdoctoral Fellowship awarded to PG and NASA grant NNX13AE47G funded this work. CB is grateful for support from NOAA and the NSF-GRFP (Grant No. 1314109). DJM gratefully acknowledges support from NASA and NSF.
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  • 32
    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Cellular Neuroscience 11 (2017): 388, doi:10.3389/fncel.2017.00388.
    Description: α-Synuclein is a presynaptic protein that regulates synaptic vesicle (SV) trafficking. In Parkinson’s disease (PD) and several other neurodegenerative disorders, aberrant oligomerization and aggregation of α-synuclein lead to synaptic dysfunction and neurotoxicity. Despite evidence that α-synuclein oligomers are generated within neurons under physiological conditions, and that altering the balance of monomers and oligomers contributes to disease pathogenesis, how each molecular species of α-synuclein impacts SV trafficking is currently unknown. To address this, we have taken advantage of lamprey giant reticulospinal (RS) synapses, which are accessible to acute perturbations via axonal microinjection of recombinant proteins. We previously reported that acute introduction of monomeric α-synuclein inhibited SV recycling, including effects on the clathrin pathway. Here, we report the effects of α-synuclein dimers at synapses. Similar to monomeric α-synuclein, both recombinant α-synuclein dimers that were evaluated bound to small liposomes containing anionic lipids in vitro, but with reduced efficacy. When introduced to synapses, the α-synuclein dimers also induced SV recycling defects, which included a build up of clathrin-coated pits (CCPs) with constricted necks that were still attached to the plasma membrane, a phenotype indicative of a vesicle fission defect. Interestingly, both α-synuclein dimers induced longer necks on CCPs as well as complex, branching membrane tubules, which were distinct from the CCPs induced by a dynamin inhibitor, Dynasore. In contrast, monomeric α-synuclein induced a buildup of free clathrin-coated vesicles (CCVs), indicating an inhibition of clathrin-mediated endocytosis at a later stage during the clathrin uncoating process. Taken together, these data further support the conclusion that excess α-synuclein impairs SV recycling. The data additionally reveal that monomeric and dimeric α-synuclein produce distinct effects on clathrin-mediated endocytosis, predicting different molecular mechanisms. Understanding what these mechanisms are could help to further elucidate the normal functions of this protein, as well as the mechanisms underlying PD pathologies.
    Description: This study was supported by a research grant from the National Institutes of Health (NINDS/NIA R01NS078165 to JRM), research funds from the Marine Biological Laboratory (to JRM) and a research grant from Horizon 2020 Grant no. InCure EU Joint Programme—JPND (to LB).
    Keywords: Dynamin ; Dynasore ; Endocytosis ; Lamprey ; Reticulospinal synapse
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  • 33
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 3 (2016): 232, doi:10.3389/fmars.2016.00232.
    Description: The reactive oxygen species (ROS) superoxide has been implicated in both beneficial and detrimental processes in coral biology, ranging from pathogenic disease resistance to coral bleaching. Despite the critical role of ROS in coral health, there is a distinct lack of ROS measurements and thus an incomplete understanding of underpinning ROS sources and production mechanisms within coral systems. Here, we quantified in situ extracellular superoxide concentrations at the surfaces of aquaria-hosted Porites astreoides during a diel cycle. High concentrations of superoxide (~10's of nM) were present at coral surfaces, and these levels did not change significantly as a function of time of day. These results indicate that the coral holobiont produces extracellular superoxide in the dark, independent of photosynthesis. As a short-lived anion at physiological pH, superoxide has a limited ability to cross intact biological membranes. Further, removing surface mucus layers from the P. astreoides colonies did not impact external superoxide concentrations. We therefore attribute external superoxide derived from the coral holobiont under these conditions to the activity of the coral host epithelium, rather than mucus-derived epibionts or internal sources such as endosymbionts (e.g., Symbiodinium). However, endosymbionts likely contribute to internal ROS levels via extracellular superoxide production. Indeed, common coral symbionts, including multiple strains of Symbiodinium (clades A to D) and the bacterium Endozoicomonas montiporae LMG 24815, produced extracellular superoxide in the dark and at low light levels. Further, representative P. astreoides symbionts, Symbiodinium CCMP2456 (clade A) and E. montiporae, produced similar concentrations of superoxide alone and in combination with each other, in the dark and low light, and regardless of time of day. Overall, these results indicate that healthy, non-stressed P. astreoides and representative symbionts produce superoxide externally, which is decoupled from photosynthetic activity and circadian control. Corals may therefore produce extracellular superoxide constitutively, highlighting an unclear yet potentially beneficial role for superoxide in coral physiology and health.
    Description: This work was supported by a Postdoctoral Fellowship from the Ford Foundation (JD), the National Science Foundation under grants OCE 1225801 (JD) and OCE 1233612 (AA), the Ocean and Climate Change Institute of the Woods Hole Oceanographic Institution (CH), a BIOS Grant in aid award (SM), the Sidney Stern Memorial Trust (CH and AA), as well as an anonymous donor.
    Keywords: Coral ; Superoxide ; Reactive oxygen species ; Photosynthesis ; Symbiodinium ; Stress
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  • 34
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 3 (2016): 243, doi:10.3389/fmars.2016.00243.
    Description: Organic ligands form strong complexes with many trace elements in seawater. Various metals can compete for the same ligand chelation sites, and the final speciation of bound metals is determined by relative binding affinities, concentrations of binding sites, uncomplexed metal concentrations, and association/dissociation kinetics. Different ligands have a wide range of metal affinities and specificities. However, the chemical composition of these ligands in the marine environment remains poorly constrained, which has hindered progress in modeling marine metal speciation. In this study, we detected and characterized natural ligands that bind copper (Cu) and nickel (Ni) in the eastern South Pacific Ocean with liquid chromatography tandem inductively coupled plasma mass spectrometry (LC-ICPMS), and high-resolution electrospray ionization mass spectrometry (ESIMS). Dissolved Cu, Ni, and ligand concentrations were highest near the coast. Chromatographically unresolved polar compounds dominated ligands isolated near the coast by solid phase extraction. Offshore, metal and ligand concentrations decreased, but several new ligands appeared. One major ligand was detected that bound both Cu2+ and Ni2+. Based on accurate mass and fragmentation measurements, this compound has a molecular formula of [C20H21N4O8S2+M]+ (M = metal isotope) and contains several azole-like metal binding groups. Additional lipophilic Ni complexes were also present only in oligotrophic waters, with masses of 649, 698, and 712 m/z (corresponding to the 58Ni metal complex). Molecular formulae of [C32H54N3O6S2Ni]+ and [C33H56N3O6S2Ni]+ were determined for two of these compounds. Addition of Cu and Ni to the samples also revealed the presence of additional compounds that can bind both Ni and Cu. Although these specific compounds represent a small fraction of the total dissolved Cu and Ni pool, they highlight the compositional diversity and spatial heterogeneity of marine Ni and Cu ligands, as well as variability in the extent to which different metals in the same environment compete for ligand binding.
    Description: Support was provided by the National Science Foundation (NSF) program in Chemical Oceanography (OCE-1356747, OCE-1233261, OCE-1233733, OCE-1233502, and OCE-1237034), the NSF Science and Technology Center for Microbial Oceanography Research and Education (C-MORE; DBI-0424599), the Gordon and Betty Moore Foundation (#3298 and 3934), and the Simons Foundation (#329108, DR).
    Keywords: Copper ; Nickel ; Marine ligands ; Metal competition ; GEOTRACES ; Eastern Pacific
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  • 35
    Publication Date: 2022-05-26
    Description: This is an open access article, free of all copyright. The definitive version was published in PLoS ONE 12 (2017): e0170962, doi:10.1371/journal.pone.0170962.
    Description: Bio-logging tags are an important tool for the study of cetaceans, but superficial tags inevitably increase hydrodynamic loading. Substantial forces can be generated by tags on fast-swimming animals, potentially affecting behavior and energetics or promoting early tag removal. Streamlined forms have been used to reduce loading, but these designs can accelerate flow over the top of the tag. This non-axisymmetric flow results in large lift forces (normal to the animal) that become the dominant force component at high speeds. In order to reduce lift and minimize total hydrodynamic loading this work presents a new tag design (Model A) that incorporates a hydrodynamic body, a channel to reduce fluid speed differences above and below the housing and wing to redirect flow to counter lift. Additionally, three derivatives of the Model A design were used to examine the contribution of individual flow control features to overall performance. Hydrodynamic loadings of four models were compared using computational fluid dynamics (CFD). The Model A design eliminated all lift force and generated up to ~30 N of downward force in simulated 6 m/s aligned flow. The simulations were validated using particle image velocimetry (PIV) to experimentally characterize the flow around the tag design. The results of these experiments confirm the trends predicted by the simulations and demonstrate the potential benefit of flow control elements for the reduction of tag induced forces on the animal.
    Description: This project was funded by the National Oceanographic Partnership Program [National Science Foundation via the Office of Naval Research N00014-11-1-0113]. C. Spencer Garborg was supported by a Grove City College Swezey Student Fellowship to Erik Anderson. Mark Johnson was funded by a Marie Curie-Sklodowska grant from the European Union.
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  • 36
    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Annual Review of Marine Science 9 (2017): 173-203, doi:10.1146/annurev-marine-010816-060733.
    Description: The events that followed the Tohoku earthquake and tsunami on March 11, 2011, included the loss of power and overheating at the Fukushima Daiichi nuclear power plants, which led to extensive releases of radioactive gases, volatiles, and liquids, particularly to the coastal ocean. The fate of these radionuclides depends in large part on their oceanic geochemistry, physical processes, and biological uptake. Whereas radioactivity on land can be resampled and its distribution mapped, releases to the marine environment are harder to characterize owing to variability in ocean currents and the general challenges of sampling at sea. Five years later, it is appropriate to review what happened in terms of the sources, transport, and fate of these radionuclides in the ocean. In addition to the oceanic behavior of these contaminants, this review considers the potential health effects and societal impacts.
    Description: K.B. was supported in part by the Gordon and Betty Moore Foundation and the Deerbrook Charitable Trust. P.M. was supported in part by the Generalitat de Catalunya through MERS (grant 2014 SGR 1356), the European Commission 7th Framework COMET-FRAME project (grant agreement 604974), and the Ministerio de Economía y Competitividad of Spain (project CTM2011-15152-E). S.C. was supported in part by the French program Investissement d'Avenir run by the National Research Agency (AMORAD project, grant ANR-11-RSNR-0002). D.O. was supported in part by the Center for Environmental Radioactivity (NFR Centers of Excellence grant 223268/F50). J.N.S. was supported in part by the Marine Environmental Observation, Prediction, and Response Network.
    Keywords: Cesium ; Caesium ; North Pacific ; Radioactivity ; Japan
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  • 37
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Microbiology 7 (2016): 2017, doi:10.3389/fmicb.2016.02017.
    Description: Ciliates from the genus Mesodinium are globally distributed in marine and freshwater ecosystems and may possess either heterotrophic or mixotrophic nutritional modes. Members of the Mesodinium major/rubrum species complex photosynthesize by sequestering and maintaining organelles from cryptophyte prey, and under certain conditions form periodic or recurrent blooms (= red tides). Here, we present an analysis of the genetic diversity of Mesodinium and cryptophyte populations from 10 environmental samples (eight globally dispersed habitats including five Mesodinium blooms), using group-specific primers for Mesodinium partial 18S, ITS, and partial 28S rRNA genes as well as cryptophyte large subunit RuBisCO genes (rbcL). In addition, 22 new cryptophyte and four new M. rubrum cultures were used to extract DNA and sequence rbcL and 18S-ITS-28S genes, respectively, in order to provide a stronger phylogenetic context for our environmental sequences. Bloom samples were analyzed from coastal Brazil, Chile, two Northeastern locations in the United States, and the Pribilof Islands within the Bering Sea. Additionally, samples were also analyzed from the Baltic and Barents Seas and coastal California under non-bloom conditions. Most blooms were dominated by a single Mesodinium genotype, with coastal Brazil and Chile blooms composed of M. major and the Eastern USA blooms dominated by M. rubrum variant B. Sequences from all four blooms were dominated by Teleaulax amphioxeia-like cryptophytes. Non-bloom communities revealed more diverse assemblages of Mesodinium spp., including heterotrophic species and the mixotrophic Mesodinium chamaeleon. Similarly, cryptophyte diversity was also higher in non-bloom samples. Our results confirm that Mesodinium blooms may be caused by M. major, as well as multiple variants of M. rubrum, and further implicate T. amphioxeia as the key cryptophyte species linked to these phenomena in temperate and subtropical regions.
    Description: MJ thanks the funding support of the National Science Foundations Grants NSF-OCE 1031718 and NSF-IOS 1326228.
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  • 38
    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 12 (2017): e0186156, doi:10.1371/journal.pone.0186156.
    Description: Bowhead whales (Balaena mysticetus) have a nearly circumpolar distribution, and occasionally occupy warmer shallow coastal areas during summertime that may facilitate molting. However, relatively little is known about the occurrence of molting and associated behaviors in bowhead whales. We opportunistically observed whales in Cumberland Sound, Nunavut, Canada with skin irregularities consistent with molting during August 2014, and collected a skin sample from a biopsied whale that revealed loose epidermis and sloughing. During August 2016, we flew a small unmanned aerial system (sUAS) over whales to take video and still images to: 1) determine unique individuals; 2) estimate the proportion of the body of unique individuals that exhibited sloughing skin; 3) determine the presence or absence of superficial lines representative of rock-rubbing behavior; and 4) measure body lengths to infer age-class. The still images revealed that all individuals (n = 81 whales) were sloughing skin, and that nearly 40% of them had mottled skin over more than two-thirds of their bodies. The video images captured bowhead whales rubbing on large rocks in shallow, coastal areas—likely to facilitate molting. Molting and rock rubbing appears to be pervasive during late summer for whales in the eastern Canadian Arctic.
    Description: Fieldwork was funded by: Fisheries and Oceans Canada (Emerging Fisheries 41436-810-120-4D875), Nunavut Wildlife Research Trust Fund (project 3-13-29 Bowhead Whale Movement's and Ecology), Molson Foundation (318366), Ocean Tracking Network (NSERC NETGP 375118-08), and ArcticNet Centre of Excellence (317588) awarded to S.H. Ferguson and World Wildlife Fund Canada (Arctic Species Conservation Fund) awarded to W.R. Koski and S.M.E. Fortune. Additional field work support was provided by: U.S. Department of the Interior, Minerals Management Service (MMS; now Bureau of Ocean Energy Management), through Inter-agency Agreement No. M08PG20021 with the U.S. Department of Commerce, National Oceanic and Atmospheric Administration, as part of the MMS Alaska Environmental Studies Program awarded to M.F. Baumgartner. Personnel support was provided by: Natural Sciences and Engineering Research Council Canadian Graduate Scholarship, the W. Garfield Weston Award for Northern Research, University of British Columbia Affiliated Fellowship and Northern Scientific Training Program (Canadian Polar Commission) awarded to S.M.E. Fortune
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  • 39
    Publication Date: 2022-05-26
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Frontiers in Marine Science 4 (2017): 338, doi:10.3389/fmars.2017.00338.
    Description: The Santa Maria di Leuca (SML) cold-water coral province (northern Ionian Sea) has the largest occurrence of a living white coral community currently known in the Mediterranean Sea. Madrepora oculata and Lophelia pertusa, identified as marking sensitive habitats of relevance by the General Fisheries Commission for the Mediterranean, have been observed heterogeneously distributed on the summits of several mounds. This particularly patchy and uneven distribution in addition to their importance for regional biodiversity highlights the need to better understand their environmental preferences and predict their distribution. Bathymetric data (40 m resolution) was used to derive seafloor characteristics. A fine scale index quantifying the landscape elevation (Bathymetric Position Index at 120 m resolution) was used to select all the elevated features considered as candidate morphologies for potential coral mounds. Statistics on 22 known coral topped mounds were computed. Two statistical methods were then used to identify other potential coral mounds based on predictive variables. The first method, the Geomorphometric proxies method, consists in computing basic statistics of terrain variables, using them for a step-by-step classification in a quantitative approach to select a subset of candidate morphologies. The second method consists in using a predictive Habitat Suitability Model (Maxent model). The Geomorphometric proxies method identified 736 potential coral mounds while the Maxent method predicted 1,252 potential coral mounds. A subset of 517 potential coral mounds was common to both methods. The analysis of the contribution of each variable with the Maxent method showed that the variable “Vector Ruggedness Measure” at a resolution of 5 pixels (200 m) contributed to 53% of the final Maxent model, followed by the “Terrain Texture” index (31%) at a resolution of 11 pixels (440 m). The common potential coral mounds are mainly located in an area characterized by a mass transport deposit, also called the mounds area because of the roughness of the seafloor, in accordance with the high proportional contribution of the noticeable first roughness index to the Maxent model. The results highlight the importance of the global conservation of the entire Province, with white coral probably widespread over the entire 600 km2 SML area.
    Description: The Habitat Suitability model study was part of a post-doctoral grant funded by the “Agence de l'Eau Rhône Méditerranée & Corse” under Convention Number 2015 0348, Ifremer and ISMAR Bologna. We are grateful to all the participants and the P.I. of the Aplabes 2004; Aplabes 2005, HERMES M70-1, MEDECO 2007 (http://dx.doi.org/10.17600/7030090) and magic CoralFISH 2010 cruises. The authors also benefited from EU FP7 project CoralFish (Grant agreement number: 213144—http://www.eu-fp7-coralfish.net), the Flag Project Ritmare (Ricerca Italiana per il Mare), funded by the Italian Ministry of Universities and Research (MIUR) and the ESF COCARDE Network. FM was funded through a Ph. D. fellowship in Earth Sciences at the University of Milano-Bicocca.
    Keywords: Predictive habitat mapping ; Maxent ; Cold-water coral ; Ecological proxies ; Santa Maria di Leuca ; Mediterranean Sea
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  • 40
    Publication Date: 2017-12-07
    Description: Author(s): E. Yakaboylu, A. Deuchert, and M. Lemeshko Recently, it was shown that molecules rotating in superfluid helium can be described in terms of the angulon quasiparticles [ Phys. Rev. Lett. 118 , 095301 (2017) ]. Here, we demonstrate that in the experimentally realized regime the angulon can be seen as a point charge on a two-sphere interacting wit... [Phys. Rev. Lett. 119, 235301] Published Wed Dec 06, 2017
    Keywords: Condensed Matter: Structure, etc.
    Print ISSN: 0031-9007
    Electronic ISSN: 1079-7114
    Topics: Physics
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  • 41
    Publication Date: 2017-12-07
    Description: Author(s): P. Lampen-Kelley, A. Banerjee, A. A. Aczel, H. B. Cao, M. B. Stone, C. A. Bridges, J.-Q. Yan, S. E. Nagler, and D. Mandrus The insulating honeycomb magnet α − RuCl 3 exhibits fractionalized excitations that signal its proximity to a Kitaev quantum spin liquid state; however, at T = 0 , fragile long-range magnetic order arises from non-Kitaev terms in the Hamiltonian. Spin vacancies in the form of Ir 3 + substituted for Ru are f... [Phys. Rev. Lett. 119, 237203] Published Wed Dec 06, 2017
    Keywords: Condensed Matter: Electronic Properties, etc.
    Print ISSN: 0031-9007
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  • 42
    Publication Date: 2017-12-07
    Description: Author(s): Dimitri R. Dounas-Frazer, Jacob T. Stanley, and H. J. Lewandowski Frustration and struggle are necessary features of learning environments that promote student ownership of projects, as opposed to obstacles that hinder ownership. [Phys. Rev. Phys. Educ. Res. 13, 020136] Published Wed Dec 06, 2017
    Electronic ISSN: 1554-9178
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  • 43
    Publication Date: 2017-12-07
    Description: Author(s): Hairun Guo, Erwan Lucas, Martin H. P. Pfeiffer, Maxim Karpov, Miles Anderson, Junqiu Liu, Michael Geiselmann, John D. Jost, and Tobias J. Kippenberg Optical frequency combs, which constitute equally spaced frequency lines, can be generated using temporal dissipative Kerr solitons—stable laser pulses generated in a laser-driven nonlinear microresonator—but these solitons can destabilize and oscillate. A new analysis reveals a novel mechanism that can trigger “soliton breathing,” highlighting the rich nonlinear dynamics of dissipative temporal structures in microresonators and identifying a regime that has to be avoided in applications. [Phys. Rev. X 7, 041055] Published Wed Dec 06, 2017
    Electronic ISSN: 2160-3308
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  • 44
    Publication Date: 2017-12-07
    Description: Author(s): Seyedeh Mahsa Kamali, Ehsan Arbabi, Amir Arbabi, Yu Horie, MohammadSadegh Faraji-Dana, and Andrei Faraon Researchers have demonstrated a device that can project two distinct holographic images when illuminated at different angles. [Phys. Rev. X 7, 041056] Published Wed Dec 06, 2017
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  • 45
    Publication Date: 2017-12-07
    Description: Author(s): Mathieu Taillefumier, Owen Benton, Han Yan, L. D. C. Jaubert, and Nic Shannon Spin ice is an exotic phase of low-temperature magnetic material in which the atoms behave like a liquid no matter how cold it becomes. New computer simulations look at how spin ice behaves near absolute zero and find surprisingly rich behavior. [Phys. Rev. X 7, 041057] Published Wed Dec 06, 2017
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  • 46
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    American Physical Society (APS)
    In: Physics
    Publication Date: 2017-12-07
    Description: Author(s): Stephan Rosswog New calculations show that the accretion flows that form after a neutron star collision can eject large amounts of matter that is rich in gold and other heavy elements. [Physics 10, 131] Published Wed Dec 06, 2017
    Electronic ISSN: 1539-0748
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  • 47
    Publication Date: 2017-12-07
    Description: Author(s): Darren Crowdy We find expressions for the change in hydrodynamic slip length when a weakly shear-thinning fluid flows longitudinally, or transversely, over a periodic array of flat, unidirectional no-shear slots from a modified reciprocal theorem of Stokes flow and exact solutions for a Newtonian fluid. [Phys. Rev. Fluids 2, 124201] Published Wed Dec 06, 2017
    Keywords: Micro- and Nanofluidics
    Electronic ISSN: 2469-990X
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  • 48
    Publication Date: 2017-12-07
    Description: Author(s): Avishek Chowdhury, Sylvain Barbay, Marcel G. Clerc, Isabelle Robert-Philip, and Rémy Braive Stochastic resonance is a general phenomenon usually observed in one-dimensional, amplitude modulated, bistable systems. We show experimentally the emergence of phase stochastic resonance in the bidimensional response of a forced nanoelectromechanical membrane by evidencing the enhancement of a weak... [Phys. Rev. Lett. 119, 234101] Published Wed Dec 06, 2017
    Keywords: Nonlinear Dynamics, Fluid Dynamics, Classical Optics, etc.
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  • 49
    Publication Date: 2017-12-07
    Description: Author(s): S. Kreuzahler, Y. Ponty, N. Plihon, H. Homann, and R. Grauer We present results from consistent dynamo simulations, where the electrically conducting and incompressible flow inside a cylinder vessel is forced by moving impellers numerically implemented by a penalization method. The numerical scheme models jumps of magnetic permeability for the solid impellers... [Phys. Rev. Lett. 119, 234501] Published Wed Dec 06, 2017
    Keywords: Nonlinear Dynamics, Fluid Dynamics, Classical Optics, etc.
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  • 50
    Publication Date: 2017
    Description: 〈b〉Friedrich Robert Helmert, founder of modern geodesy, on the occasion of the centenary of his death〈/b〉〈br〉 Johannes Ihde and Andreas Reinhold〈br〉 Hist. Geo Space. Sci., 8, 79-95, https://doi.org/10.5194/hgss-8-79-2017, 2017〈br〉 Friedrich Robert Helmert died in Potsdam in 1917. He was, for over 30 years, director of the Royal Prussian Geodetic Institute and of the Central Bureau of the Internationale Erdmessung, today's IAG. He dedicated his life and his scientific career to the field of geodesy. His teachings on theoretical and physical geodesy were incorporated into university curricula around the world and hence into international endeavours to measure planet Earth.
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  • 51
    Publication Date: 2017
    Description: 〈b〉Scientific Drilling at Lake Tanganyika, Africa: A Transformative Record for Understanding Evolution in Isolation and the Biological History of the African Continent, University of Basel, 6–8 June 2016〈/b〉〈br〉 Andrew S. Cohen and Walter Salzburger〈br〉 Sci. Dril., 22, 43-48, https://doi.org/10.5194/sd-22-43-2017, 2017〈br〉 A workshop was held in Basel, Switzerland, to discuss the scientific opportunities for evolutionary biology, paleobiology and paleoecology of a drilling project at Lake Tanganyika, one of the oldest and most biodiverse lakes on Earth. A record of the numerous endemic organisms collected from the lake coupling body fossils, environmental history and potentially aDNA or ancient protein records would be transformative for understanding evolution in isolation and the biogeographic history of Africa.
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  • 52
    Publication Date: 2017
    Description: 〈b〉Flow intake control using dry-weather forecast〈/b〉〈br〉 Otto Icke, Kim van Schagen, Christian Huising, Jasper Wuister, Edward van Dijk, and Arjan Budding〈br〉 Drink. Water Eng. Sci., 10, 69-74, https://doi.org/10.5194/dwes-10-69-2017, 2017〈br〉 Flow intake based on predictive control using dry-weather flow and rainfall predictions offers reduced peak discharges on the waste water treatment plants. This results in a better performance of the waste water treatment plant and particularly the utilisation of the post-treatment phase. Results at waste water treatment plant Bennekom show that about 50 % of bypass volume of the post-treatment phase can be prevented with operational predictive control. This improves the surface water quality.
    Print ISSN: 1996-9457
    Electronic ISSN: 1996-9465
    Topics: Energy, Environment Protection, Nuclear Power Engineering
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  • 53
    Publication Date: 2017
    Description: 〈b〉Online total organic carbon (TOC) monitoring for water and wastewater treatment plants processes and operations optimization〈/b〉〈br〉 Céline Assmann, Amanda Scott, and Dondra Biller〈br〉 Drink. Water Eng. Sci., 10, 61-68, https://doi.org/10.5194/dwes-10-61-2017, 2017〈br〉 TOC (total organics carbon) analysis, as a laboratory and online technology, offers new perspectives to organic measurements in waters and waste water, supplementing regulatory oxygen demand tests. TOC monitoring, implemented as a tool to make informative and rapid treatment decisions, becomes a useful process control parameter. This paper discusses the various technologies available and details how three municipal plants gained insights into their processes and saved on their spending with TOC.
    Print ISSN: 1996-9457
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
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  • 54
    Publication Date: 2017
    Description: 〈b〉Fifteen years of the Chinese Continental Scientific Drilling Program〈/b〉〈br〉 Zhiqin Xu, Jingsui Yang, Chengshan Wang, Zhisheng An, Haibing Li, Qin Wang, and Dechen Su〈br〉 Sci. Dril., 22, 1-18, https://doi.org/10.5194/sd-22-1-2017, 2017〈br〉 The 5158 m deep borehole of the Chinese Continental Scientific Drilling (CCSD) Project in the Sulu ultrahigh-pressure metamorphic terrain marked the starting point of the CCSD Program. Since then, several continental scientific drilling projects were conducted with funding of the Chinese government and partially with support of ICDP, resulting in a total drilling depth of more than 35 000 m. This paper reviews the history and major progress of the CCSD Program in the past 15 years.
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  • 55
    Publication Date: 2017
    Description: 〈b〉GONAF – the borehole Geophysical Observatory at the North Anatolian Fault in the eastern Sea of Marmara〈/b〉〈br〉 Marco Bohnhoff, Georg Dresen, Ulubey Ceken, Filiz Tuba Kadirioglu, Recai Feyiz Kartal, Tugbay Kilic, Murat Nurlu, Kenan Yanik, Digdem Acarel, Fatih Bulut, Hisao Ito, Wade Johnson, Peter Eric Malin, and Dave Mencin〈br〉 Sci. Dril., 22, 19-28, https://doi.org/10.5194/sd-22-19-2017, 2017〈br〉 GONAF (Geophysical Observatory at the North Anatolian Fault) has been installed around the eastern Sea of Marmara section where a 〈i〉M〈/i〉〈i〉〉〈/i〉7 earthquake is pending to capture the seismic and strain activity preceding, during, and after such an anticipated event. GONAF is currently comprised of seven 300 m deep vertical seismic profiling stations and four collocated 100 m deep borehole strain meters. GONAF is the first ICDP-driven project with a primary focus on long-term fault-zone monitoring.
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  • 56
    Publication Date: 2017
    Description: 〈b〉Regional estimation of Curie-point depths and succeeding geothermal parameters from recently acquired high-resolution aeromagnetic data of the entire Bida Basin, north-central Nigeria〈/b〉〈br〉 Levi I. Nwankwo and Abayomi J. Sunday〈br〉 Geoth. Energ. Sci., 5, 1-9, https://doi.org/10.5194/gtes-5-1-2017, 2017〈br〉 The recent aeromagnetic data over the Bida Basin, Nigeria, have been used to estimate the Curie-point depths (CPDs), geothermal gradients (GGs), and near-surface crustal heat flow (HF) of the basin. The result shows that the CPD varies between 15.57 and 29.62 km, GG varies between 19.58 and 37.25 °C km〈sup〉−1〈/sup〉, and HF varies between 48.41 and 93.12 mW m〈sup〉−2〈/sup〉. Regions are observed in the basin with shallow CPDs and corresponding high HFs, thus suggesting anomalous geothermal conditions.
    Print ISSN: 2195-4771
    Electronic ISSN: 2195-478X
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Geosciences
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  • 57
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    Publication Date: 2017
    Description: 〈b〉Ecology Day〈/b〉〈br〉 Maria Amélia Martins Loução〈br〉 Web Ecol., 17, 65-67, https://doi.org/10.5194/we-17-65-2017, 2017〈br〉 Following the 150th anniversary of the science of ecology, the Portuguese Ecological Society (SPECO) proposes 14 September as Ecology Day. This day should be promoted by ecological societies to host different kinds of public and media events closely related to ecology, in a broad sense. The date, 14 September, was chosen because it was on that day Haeckel had published his 〈q〉Ökologie und Chorologie〈/q〉.
    Print ISSN: 2193-3081
    Electronic ISSN: 1399-1183
    Topics: Biology
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  • 58
    Publication Date: 2017
    Description: 〈b〉The ecology of subindividual variability in plants: patterns, processes, and prospects〈/b〉〈br〉 Carlos M. Herrera〈br〉 Web Ecol., 17, 51-64, https://doi.org/10.5194/we-17-51-2017, 2017〈br〉 Plants produce a considerable number of structures of one kind, like leaves, flowers, fruits, and seeds, which are not identical. This paper provides an overview of current knowledge on traits that vary subindividually, the magnitude of subindividual variation, and its spatial patterning. Examples are presented on the consequences of subindividual variation for plants and consumers. Emerging links between genetics, epigenetics, subindividual variation, and population ecology are also considered.
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  • 59
    Publication Date: 2017
    Description: 〈b〉A statistical approach to latitude measurements: Ptolemy's and Riccioli's geographical works as case studies〈/b〉〈br〉 Luca Santoro〈br〉 Hist. Geo Space. Sci., 8, 69-77, https://doi.org/10.5194/hgss-8-69-2017, 2017〈br〉 Historical geographical works typically contain many latitude measurements of locations: all show measurement errors and some of these refer to lost cities. How can we estimate errors? How can we know the right position of lost cities? This work shows a general approach to give a scientific answer to these questions in two particular case studies: Ptolemy's Geography and Riccioli's work on geography.
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  • 60
    Publication Date: 2017
    Description: 〈b〉Steponas Kolupaila's contribution to hydrological science development〈/b〉〈br〉 Gintaras Valiuškevičius〈br〉 Hist. Geo Space. Sci., 8, 57-67, https://doi.org/10.5194/hgss-8-57-2017, 2017〈br〉 This article presents the most important facts on the life and scientific achievements of Steponas Kolupaila (1892–1964) – one of the most famous hydrologists of the 20th century. This Lithuanian scientist is especially well known for his book 〈i〉Bibliography of Hydrometry〈/i〉.
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  • 61
    Publication Date: 2017
    Description: 〈b〉Ball lightning: a Renaissance account from Zafra (Spain)〈/b〉〈br〉 José M. Vaquero〈br〉 Hist. Geo Space. Sci., 8, 53-56, https://doi.org/10.5194/hgss-8-53-2017, 2017〈br〉 An analysis is given of the account of a 〈q〉globe of fire〈/q〉 observed in Zafra (Spain) in the middle of the 16th century. During a strong storm, Conde Don Pedro observed what he described as a 〈q〉globe of fire〈/q〉 that was directed against the city and abruptly changed course. He attributed the change in course to a miracle. He described neither any damage nor sound.
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  • 62
    Publication Date: 2017
    Description: 〈b〉Franz Kossmat – 〈i〉Subdivision of the Variscan Mountains〈/i〉 – a translation of the German text with supplementary notes〈/b〉〈br〉 Guido Meinhold〈br〉 Hist. Geo Space. Sci., 8, 29-51, https://doi.org/10.5194/hgss-8-29-2017, 2017〈br〉 This work is in honour of Franz Kossmat (1871–1938) and his esteemed paper the 〈i〉Gliederung des varistischen Gebirgsbaues〈/i〉 published 1927 in 〈i〉Abhandlungen des Sächsischen Geologischen Landesamts〈/i〉, Volume 1, pages 1 to 39. It constitutes the foundation of the general subdivision of the Central European Variscides into several geotectonic zones and the idea of large-scale nappe transport of individual units. In the English translation presented here an attempt is made to provide a readable text, which should still reflect Kossmat's style but would also be readable for a non-German speaking community either working in the Variscan Mountains or having specific interests in historical aspects of geosciences. Supplementary notes provide information about Kossmat's life and the content of the text. Kossmat's work is a superb example of how important geological fieldwork and mapping are for progress in geoscientific research.
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  • 63
    Publication Date: 2017
    Description: 〈b〉Report on the ICDP workshop DIVE (Drilling the Ivrea–Verbano zonE)〈/b〉〈br〉 Mattia Pistone, Othmar Müntener, Luca Ziberna, György Hetényi, and Alberto Zanetti〈br〉 Sci. Dril., 23, 47-56, https://doi.org/10.5194/sd-23-47-2017, 2017〈br〉 The Ivrea–Verbano Zone is the most complete, time-integrated crust–upper mantle archive in the world. It is a unique target for assembling data on the deep crust and Moho transition zone to unravel the formation, evolution, and modification of the continental crust through space and time across the Earth. Four drilling operations in the Ivrea-Verbano Zone crustal section represent the scientifically most promising solution to achieve the major goals of DIVE Project.
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  • 64
    Publication Date: 2017
    Description: 〈b〉Photocatalytic degradation of dyes in water by analytical reagent grades ZnO, TiO〈sub〉2〈/sub〉 and SnO〈sub〉2〈/sub〉: a comparative study〈/b〉〈br〉 Dnyaneshwar R. Shinde, Popat S. Tambade, Manohar G. Chaskar, and Kisan M. Gadave〈br〉 Drink. Water Eng. Sci., 10, 109-117, https://doi.org/10.5194/dwes-10-109-2017, 2017〈br〉 With photocatalytic activity of commercially available photocatalysts, viz. ZnO, TiO〈sub〉2〈/sub〉 and SnO〈sub〉2〈/sub〉, a set of photocatalytic experiments was performed under similar conditions using crystal violet, basic blue and methyl red dyes in water. The comparison of photocatalytic activity of ZnO with the benchmark Degussa P-25 (TiO〈sub〉2〈/sub〉) catalyst as well as with AR grade TiO〈sub〉2〈/sub〉 and SnO〈sub〉2〈/sub〉 showed that despite low specific surface areas and larger grain sizes, ZnO displayed higher activity in the degradation of dyes.
    Print ISSN: 1996-9473
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
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  • 65
    Publication Date: 2017
    Description: 〈b〉Modeling particle transport and discoloration risk in drinking water distribution networks〈/b〉〈br〉 Joost van Summeren and Mirjam Blokker〈br〉 Drink. Water Eng. Sci., 10, 99-107, https://doi.org/10.5194/dwes-10-99-2017, 2017〈br〉 The build-up and subsequent remobilization of microscopic particles can cause discoloration of drinking water during distribution. We theoretically investigated the relevant transport processes and dependencies on flow conditions and particle properties. The presented theoretical framework is intended as a starting point for a numerical tool to help water utilities determine regions of high discoloration risk and reduce these risks, e.g., by designing more efficient pipe cleaning programs.
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  • 66
    Publication Date: 2017
    Description: 〈b〉Scientific Exploration of Induced SeisMicity and Stress (SEISMS)〈/b〉〈br〉 Heather M. Savage, James D. Kirkpatrick, James J. Mori, Emily E. Brodsky, William L. Ellsworth, Brett M. Carpenter, Xiaowei Chen, Frédéric Cappa, and Yasuyuki Kano〈br〉 Sci. Dril., 23, 57-63, https://doi.org/10.5194/sd-23-57-2017, 2017〈br〉 The Scientific Exploration of Induced SeisMicity and Stress (SEISMS) meeting brought together earthquake scientists from around the world. Discussion focused on field-scale experiments for understanding earthquake nucleation, propagation, and arrest.
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  • 67
    Publication Date: 2017
    Description: 〈b〉Limitations of demand- and pressure-driven modeling for large deficient networks〈/b〉〈br〉 Mathias Braun, Olivier Piller, Jochen Deuerlein, and Iraj Mortazavi〈br〉 Drink. Water Eng. Sci., 10, 93-98, https://doi.org/10.5194/dwes-10-93-2017, 2017〈br〉 The article introduces a stable formulation of the model for water distribution systems that guarantees the existence of a unique solution. This is done regarding two modeling paradigms. First for models with customer demand as a fixed boundary condition and second for models that add a boundary condition on the minimum network pressure. The following discussion concludes that pressure-driven models are superior in modeling deficient networks, but still have to be improved.
    Print ISSN: 1996-9473
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  • 68
    Publication Date: 2017
    Description: 〈b〉Limitations of demand- and pressure-driven modeling for large deficient networks〈/b〉〈br〉 Mathias Braun, Olivier Piller, Jochen Deuerlein, and Iraj Mortazavi〈br〉 Drink. Water Eng. Sci., 10, 93-98, https://doi.org/10.5194/dwes-10-93-2017, 2017〈br〉 The article introduces a stable formulation of the model for water distribution systems that guarantees the existence of a unique solution. This is done regarding two modeling paradigms. First for models with customer demand as a fixed boundary condition and second for models that add a boundary condition on the minimum network pressure. The following discussion concludes that pressure-driven models are superior in modeling deficient networks, but still have to be improved.
    Print ISSN: 1996-9457
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  • 69
    Publication Date: 2017
    Description: 〈b〉Identifying (subsurface) anthropogenic heat sources that influence temperature in the drinking water distribution system〈/b〉〈br〉 Claudia M. Agudelo-Vera, Mirjam Blokker, Henk de Kater, and Rob Lafort〈br〉 Drink. Water Eng. Sci., 10, 83-91, https://doi.org/10.5194/dwes-10-83-2017, 2017〈br〉 Water temperature in the drinking water distribution system (DWDS) and at the customers' taps approaches the surrounding soil temperature at 1 m in depth. In the Netherlands drinking water is distributed without additional residual disinfectant and drinking water temperature at the customers' tap should not exceed 25 ºC. Some urban infrastructures are heat sources and generate hot-spots. This article describes a method to find anthropogenic heat sources that influence temperature in the DWDS.
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  • 70
    Publication Date: 2017
    Description: 〈b〉Modeling and clustering water demand patterns from real-world smart meter data〈/b〉〈br〉 Nicolas Cheifetz, Zineb Noumir, Allou Samé, Anne-Claire Sandraz, Cédric Féliers, and Véronique Heim〈br〉 Drink. Water Eng. Sci., 10, 75-82, https://doi.org/10.5194/dwes-10-75-2017, 2017〈br〉 This paper aims at a better understanding of water consumption usage.
    Print ISSN: 1996-9457
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  • 71
    Publication Date: 2017
    Description: 〈b〉Flow intake control using dry-weather forecast〈/b〉〈br〉 Otto Icke, Kim van Schagen, Christian Huising, Jasper Wuister, Edward van Dijk, and Arjan Budding〈br〉 Drink. Water Eng. Sci., 10, 69-74, https://doi.org/10.5194/dwes-10-69-2017, 2017〈br〉 Flow intake based on predictive control using dry-weather flow and rainfall predictions offers reduced peak discharges on the waste water treatment plants. This results in a better performance of the waste water treatment plant and particularly the utilisation of the post-treatment phase. Results at waste water treatment plant Bennekom show that about 50 % of bypass volume of the post-treatment phase can be prevented with operational predictive control. This improves the surface water quality.
    Print ISSN: 1996-9473
    Electronic ISSN: 1996-9481
    Topics: Energy, Environment Protection, Nuclear Power Engineering
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  • 72
    Publication Date: 2017
    Description: 〈b〉Modeling particle transport and discoloration risk in drinking water distribution networks〈/b〉〈br〉 Joost van Summeren and Mirjam Blokker〈br〉 Drink. Water Eng. Sci., 10, 99-107, https://doi.org/10.5194/dwes-10-99-2017, 2017〈br〉 The build-up and subsequent remobilization of microscopic particles can cause discoloration of drinking water during distribution. We theoretically investigated the relevant transport processes and dependencies on flow conditions and particle properties. The presented theoretical framework is intended as a starting point for a numerical tool to help water utilities determine regions of high discoloration risk and reduce these risks, e.g., by designing more efficient pipe cleaning programs.
    Print ISSN: 1996-9457
    Electronic ISSN: 1996-9465
    Topics: Energy, Environment Protection, Nuclear Power Engineering
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  • 73
    Publication Date: 2017
    Description: 〈b〉Online total organic carbon (TOC) monitoring for water and wastewater treatment plants processes and operations optimization〈/b〉〈br〉 Céline Assmann, Amanda Scott, and Dondra Biller〈br〉 Drink. Water Eng. Sci., 10, 61-68, https://doi.org/10.5194/dwes-10-61-2017, 2017〈br〉 TOC (total organics carbon) analysis, as a laboratory and online technology, offers new perspectives to organic measurements in waters and waste water, supplementing regulatory oxygen demand tests. TOC monitoring, implemented as a tool to make informative and rapid treatment decisions, becomes a useful process control parameter. This paper discusses the various technologies available and details how three municipal plants gained insights into their processes and saved on their spending with TOC.
    Print ISSN: 1996-9473
    Electronic ISSN: 1996-9481
    Topics: Energy, Environment Protection, Nuclear Power Engineering
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  • 74
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    Publication Date: 2017
    Description: 〈b〉Facility for testing ice drills〈/b〉〈br〉 Dennis L. Nielson, Chris Delahunty, John W. Goodge, and Jeffery P. Severinghaus〈br〉 Sci. Dril., 22, 29-33, https://doi.org/10.5194/sd-22-29-2017, 2017〈br〉 The North American Testing (NAT) was designed to test critical functions of a Rapid Access Ice Drill (RAID) at a site in northern Utah. The RAID was designed to rapidly drill in Antarctica through over 2500 m of ice and then take a core sample of the bedrock. The system has many innovative features that required field testing before the system was shipped to Antarcitca. The NAT facility consisted of a borehole where we froze a column of ice to test drilling and fluid circulation functions.
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  • 75
    Publication Date: 2017
    Description: 〈b〉Modeling and clustering water demand patterns from real-world smart meter data〈/b〉〈br〉 Nicolas Cheifetz, Zineb Noumir, Allou Samé, Anne-Claire Sandraz, Cédric Féliers, and Véronique Heim〈br〉 Drink. Water Eng. Sci., 10, 75-82, https://doi.org/10.5194/dwes-10-75-2017, 2017〈br〉 This paper aims at a better understanding of water consumption usage.
    Print ISSN: 1996-9473
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    Topics: Energy, Environment Protection, Nuclear Power Engineering
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  • 76
    Publication Date: 2017
    Description: 〈b〉IODP workshop: developing scientific drilling proposals for the Argentina Passive Volcanic Continental Margin (APVCM) – basin evolution, deep biosphere, hydrates, sediment dynamics and ocean evolution〈/b〉〈br〉 Roger D. Flood, Roberto A. Violante, Thomas Gorgas, Ernesto Schwarz, Jens Grützner, Gabriele Uenzelmann-Neben, F. Javier Hernández-Molina, Jennifer Biddle, Guillaume St-Onge, and APVCM workshop participants〈br〉 Sci. Dril., 22, 49-61, https://doi.org/10.5194/sd-22-49-2017, 2017〈br〉 The Argentine margin contains important sedimentological, paleontological and chemical records of regional and local tectonic evolution, sea level, climate evolution and ocean circulation since the opening of the South Atlantic in the Late Jurassic–Early Cretaceous as well as the present-day results of post-depositional chemical and biological alteration. Despite its important location, which underlies the exchange of southern- and northern-sourced water masses, the Argentine margin has not been investigated in detail using scientific drilling techniques, perhaps because the margin has the reputation of being erosional. However, a number of papers published since 2009 have reported new high-resolution and/or multichannel seismic surveys, often combined with multi-beam bathymetric data, which show the common occurrence of layered sediments and prominent sediment drifts on the Argentine and adjacent Uruguayan margins. There has also been significant progress in studying the climatic records in surficial and near-surface sediments recovered in sediment cores from the Argentine margin. Encouraged by these recent results, our 3.5-day IODP (International Ocean Discovery Program) workshop in Buenos Aires (8–11 September 2015) focused on opportunities for scientific drilling on the Atlantic margin of Argentina, which lies beneath a key portion of the global ocean conveyor belt of thermohaline circulation. Significant opportunities exist to study the tectonic evolution, paleoceanography and stratigraphy, sedimentology, and biosphere and geochemistry of this margin.
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  • 77
    Publication Date: 2017
    Description: 〈b〉A comparison of the use of X-ray and neutron tomographic core scanning techniques for drilling projects: insights from scanning core recovered during the Alpine Fault Deep Fault Drilling Project〈/b〉〈br〉 Jack N. Williams, Joseph J. Bevitt, and Virginia G. Toy〈br〉 Sci. Dril., 22, 35-42, https://doi.org/10.5194/sd-22-35-2017, 2017〈br〉 We compare images of drillcore from the Alpine Fault in New Zealand that were collected using X-ray computed tomography (CT) and neutron tomography (NT). Both techniques provide 3-D images of the core's internal structure, which would not be possible through visual analysis alone. We find that CT scans are more beneficial, as they can image a wider range of rock types, and this scanning technique is more practical. Nevertheless, NT provides complementary scans over limited intervals of core.
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  • 78
    Publication Date: 2017
    Description: 〈b〉Identifying (subsurface) anthropogenic heat sources that influence temperature in the drinking water distribution system〈/b〉〈br〉 Claudia M. Agudelo-Vera, Mirjam Blokker, Henk de Kater, and Rob Lafort〈br〉 Drink. Water Eng. Sci., 10, 83-91, https://doi.org/10.5194/dwes-10-83-2017, 2017〈br〉 Water temperature in the drinking water distribution system (DWDS) and at the customers' taps approaches the surrounding soil temperature at 1 m in depth. In the Netherlands drinking water is distributed without additional residual disinfectant and drinking water temperature at the customers' tap should not exceed 25 ºC. Some urban infrastructures are heat sources and generate hot-spots. This article describes a method to find anthropogenic heat sources that influence temperature in the DWDS.
    Print ISSN: 1996-9457
    Electronic ISSN: 1996-9465
    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Published by Copernicus on behalf of The Delft University of Technology.
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  • 79
    Publication Date: 2017
    Description: 〈b〉Foramina in plesiosaur cervical centra indicate a specialized vascular system〈/b〉〈br〉 Tanja Wintrich, Martin Scaal, and P. Martin Sander〈br〉 Foss. Rec., 20, 279-290, https://doi.org/10.5194/fr-20-279-2017, 2017〈br〉 Plesiosaurians retain a very long neck but greatly reduce neck flexibility, and the cervicals have large, paired, and highly symmetrical foramina on the ventral side of the centrum, traditionally termed 〈q〉subcentral foramina〈/q〉, and on the floor of the neural canal. We found that these dorsal and the ventral foramina are connected by a canal. The foramen are not for nutrient transfer; they are the osteological correlates of a highly paedomorphic vascular system in the neck of plesiosaurs.
    Print ISSN: 2193-0066
    Electronic ISSN: 2193-0074
    Topics: Geosciences
    Published by Copernicus
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  • 80
    facet.materialart.
    Unknown
    Copernicus
    Publication Date: 2017
    Description: 〈b〉Could disruptive technologies also reform academia?〈/b〉〈br〉 Casparus J. Crous〈br〉 Web Ecol., 17, 47-50, https://doi.org/10.5194/we-17-47-2017, 2017〈br〉 A thriving future science community could depend on disruptive technologies to shake up outmoded academic practices.
    Print ISSN: 2193-3081
    Electronic ISSN: 1399-1183
    Topics: Biology
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  • 81
    Publication Date: 2017-03-17
    Description: Author(s): M. Oertel, M. Hempel, T. Klähn, and S. Typel What are the thermodynamic properties of matter at extreme densities, even exceeding nuclear matter density severely? How can we describe the composition of matter for such conditions, the resulting pressure, and the maximum mass of cold neutron stars? How is this affected by finite temperatures, as they occur in core collapse supernovae and in compact star mergers? This review addresses these points within the framework of constraints from experiments as well as astronomical observations. [Rev. Mod. Phys. 89, 015007] Published Wed Mar 15, 2017
    Keywords: Astrophysics
    Print ISSN: 0034-6861
    Electronic ISSN: 1539-0756
    Topics: Physics
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  • 82
    Publication Date: 2017-03-07
    Description: Long-term vegetation monitoring in Great Britain – the Countryside Survey 1978–2007 and beyond Claire M. Wood, Simon M. Smart, Robert G. H. Bunce, Lisa R. Norton, Lindsay C. Maskell, David C. Howard, W. Andrew Scott, and Peter A. Henrys Earth Syst. Sci. Data Discuss., doi:10.5194/essd-2017-17,2017 Manuscript under review for ESSD (discussion: open, 0 comments) The Countryside Survey (CS) of Great Britain consists of an extensive set of repeated ecological measurements at a national scale, covering a time span of 29 years. CS was first undertaken in 1978 to monitor ecological and land use change in Britain using standardised procedures for recording ecological data from representative 1 km squares throughout the country. The vegetation component has subsequently been repeated in 1990, 1998 and 2007, and changes may be related to a range of drivers.
    Print ISSN: 1866-3508
    Electronic ISSN: 1866-3516
    Topics: Geosciences
    Published by Copernicus
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  • 83
    Publication Date: 2017-03-07
    Description: Long-term vegetation monitoring in Great Britain – the Countryside Survey 1978–2007 and beyond Claire M. Wood, Simon M. Smart, Robert G. H. Bunce, Lisa R. Norton, Lindsay C. Maskell, David C. Howard, W. Andrew Scott, and Peter A. Henrys Earth Syst. Sci. Data Discuss., doi:10.5194/essd-2017-17,2017 Manuscript under review for ESSD (discussion: open, 0 comments) The Countryside Survey (CS) of Great Britain consists of an extensive set of repeated ecological measurements at a national scale, covering a time span of 29 years. CS was first undertaken in 1978 to monitor ecological and land use change in Britain using standardised procedures for recording ecological data from representative 1 km squares throughout the country. The vegetation component has subsequently been repeated in 1990, 1998 and 2007, and changes may be related to a range of drivers.
    Electronic ISSN: 1866-3591
    Topics: Geosciences
    Published by Copernicus
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  • 84
    Publication Date: 2017-03-07
    Description: Measurement experiences with FluxSet digital D/I station László Hegymegi, János Szöllősy, Csaba Hegymegi, and Ádám Domján Geosci. Instrum. Method. Data Syst. Discuss., doi:10.5194/gi-2017-14,2017 Manuscript under review for GI (discussion: open, 0 comments) The authors developed and built a digital non-magnetic declination inclination magnetometer which gives all measurement data in digital form. Use of this instrument significantly decreases possibility of observation errors and minimizes handwork. We showed that this device is suitable for absolute magnetic control measurements, and its more convenient, user friendly and effective than the traditional ones.
    Electronic ISSN: 2193-0872
    Topics: Geosciences
    Published by Copernicus
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  • 85
    Publication Date: 2017-03-07
    Description: Possibilities of further improvement of 1-second fluxgate variometers Andriy Marusenkov Geosci. Instrum. Method. Data Syst. Discuss., doi:10.5194/gi-2017-12,2017 Manuscript under review for GI (discussion: open, 0 comments) The paper discusses the possibility to improve quality of geomagnetic variations monitoring at the ground observatories. The new fluxgate sensor as well as electronics with upgraded temperature and noise characteristics are described. It is supposed that the application of the discussed in the paper results and recommendations will allow creating an fluxgate magnetometer with outstanding level of parameters.
    Print ISSN: 2193-0856
    Electronic ISSN: 2193-0864
    Topics: Geosciences
    Published by Copernicus
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  • 86
    Publication Date: 2017-03-07
    Description: Measurement experiences with FluxSet digital D/I station László Hegymegi, János Szöllősy, Csaba Hegymegi, and Ádám Domján Geosci. Instrum. Method. Data Syst. Discuss., doi:10.5194/gi-2017-14,2017 Manuscript under review for GI (discussion: open, 0 comments) The authors developed and built a digital non-magnetic declination inclination magnetometer which gives all measurement data in digital form. Use of this instrument significantly decreases possibility of observation errors and minimizes handwork. We showed that this device is suitable for absolute magnetic control measurements, and its more convenient, user friendly and effective than the traditional ones.
    Print ISSN: 2193-0856
    Electronic ISSN: 2193-0864
    Topics: Geosciences
    Published by Copernicus
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  • 87
    Publication Date: 2017-03-07
    Description: Explicit and parametrised representation of under ice shelf seas in a z * coordinate ocean model Pierre Mathiot, Adrian Jenkins, Christopher Harris, and Gurvan Madec Geosci. Model Dev. Discuss., doi:10.5194/gmd-2017-37,2017 Manuscript under review for GMD (discussion: open, 0 comments) Ice shelf/ocean interactions are a major source of fresh water on the Antarctic continental shelf and have a strong impact on ocean properties, ocean circulation and sea ice. However, climate models based on the ocean/sea ice model NEMO currently do not include these interactions in any detail. The capability of explicitly simulating the circulation beneath ice shelves is introduced in the non-linear free surface model NEMO. Its implementation into the NEMO framework and its assessment in an idealised and realistic circum-Antarctic configuration is described in this study. Compared with the current prescription of ice shelf melting (i.e. at the surface) inclusion of open sub-ice-shelf leads to a decrease sea ice thickness along the coast, a weakening of the ocean stratification on the shelf, a decrease in salinity of HSSW on the Ross and Weddell Sea shelves and an increase in the strength of the gyres that circulate within the over-deepened basins on the West Antarctic continental shelf. Mimicking the under ice shelf seas overturning circulation by introducing the meltwater over the depth range of the ice shelf base, rather than at the surface is also tested. It yields similar improvements in the simulated ocean properties and circulation over the Antarctic continental shelf than the explicit ice shelf cavity representation. With the ice shelf cavities opened, the widely-used “3 equations” ice shelf melting formulation enables an interactive computation of melting that has been assessed. Comparison with observational estimates of ice shelf melting indicates realistic results for most ice shelves. However, melting rates for Amery, Getz and George VI ice shelves are considerably overestimated.
    Print ISSN: 1991-9611
    Electronic ISSN: 1991-962X
    Topics: Geosciences
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  • 88
    Publication Date: 2017-03-07
    Description: Multiple domain evaluation of watershed hydrology models Karthik Kumarasamy and Patrick Belmont Hydrol. Earth Syst. Sci. Discuss., doi:10.5194/hess-2017-121,2017 Manuscript under review for HESS (discussion: open, 0 comments) Watershed scale models simulating hydrology and water quality have advanced rapidly in sophistication. Given the importance of these models to support decision-making for a wide range of environmental issues, the hydrology community is compelled to improve the metrics used to evaluate model performance. We introduce a suite of new tools and metrics for model evaluation. We propose general guidelines for selecting parameters that should be included for matching predicted flow with measured flow.
    Print ISSN: 1027-5606
    Electronic ISSN: 1607-7938
    Topics: Geography , Geosciences
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  • 89
    Publication Date: 2017-03-07
    Description: Moment-based Metrics for Global Sensitivity Analysis of Hydrological Systems Aronne Dell'Oca, Monica Riva, and Alberto Guadagnini Hydrol. Earth Syst. Sci. Discuss., doi:10.5194/hess-2017-90,2017 Manuscript under review for HESS (discussion: open, 0 comments) We propose new metrics to assist global sensitivity analysis of Earth systems. Our approach allows assessing the impact of model parameters on the first four statistical moments of a target model output, allowing to ascertain which parameters can affect some moments of the model output pdf while being uninfluential to others. Our approach is fully compatible with analysis in the context of model complexity reduction, design of experiment, uncertainty quantification and risk assessment.
    Print ISSN: 1027-5606
    Electronic ISSN: 1607-7938
    Topics: Geography , Geosciences
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  • 90
    Publication Date: 2017-03-18
    Description: Interannual variation, decadal trend, and future change in ozone outflow from East Asia Jia Zhu, Hong Liao, Yuhao Mao, Yang Yang, and Hui Jiang Atmos. Chem. Phys., 17, 3729-3747, doi:10.5194/acp-17-3729-2017, 2017 Asian O 3 outflow exhibited a small and statistically insignificant decadal trend with large interannual variations from 1986–2006. The latter were mainly caused by variations in the meteorological conditions. Future climate change will aggravate the effects of the increases in anthropogenic emissions on future changes in the Asian O 3 outflow. These findings help us to understand the variations in tropospheric O 3 in the regions downwind of East Asia on different timescales.
    Print ISSN: 1680-7316
    Electronic ISSN: 1680-7324
    Topics: Geosciences
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  • 91
    Publication Date: 2017-03-18
    Description: Tracing changes in atmospheric moisture supply to the drying Southwest China Chi Zhang, Qiuhong Tang, Deliang Chen, Laifang Li, Xingcai Liu, and Huijuan Cui Atmos. Chem. Phys. Discuss., doi:10.5194/acp-2017-147,2017 Manuscript under review for ACP (discussion: open, 0 comments) Precipitation over Southwest China (SWC) decreased significantly in recent years. By attributing precipitation to its sources, we found that the reduced precipitation is resulted from the reduced moisture supply from regions influenced by the South Asian Summer Monsoon and the westerlies. Further study revealed the dynamic variations in circulation dominate the interannual variations in precipitation over SWC. Changes in circulation systems may be related to the recent changes in SSTs.
    Print ISSN: 1680-7316
    Electronic ISSN: 1680-7324
    Topics: Geosciences
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  • 92
    Publication Date: 2017-03-18
    Description: Potential impact of carbonaceous aerosols on the Upper Troposphere and Lower Stratosphere (UTLS) during Asian summer monsoon in a global model simulation Suvarna Fadnavis, Gayatry Kalita, K. Ravi Kumar, Blaz Gasparini, and Jui-Lin Frank Li Atmos. Chem. Phys. Discuss., doi:10.5194/acp-2017-197,2017 Manuscript under review for ACP (discussion: open, 0 comments) In this study, the model simulations show that monsoon convection over the Bay of Bengal, the South China Sea and Southern flanks of the Himalayas transport Asian carbonaceous aerosol into the UTLS. Carbonaceous aerosol induces enhancement in heating rate, vertical velocity and water vapor transport in the UTLS.Doubling of BC + OC aerosols creates an anomalous warming over the TP. It elicits monsoon Hadley circulation and thus increases precipitation over India and northeast China.
    Print ISSN: 1680-7316
    Electronic ISSN: 1680-7324
    Topics: Geosciences
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  • 93
    Publication Date: 2017-03-18
    Description: An improved parameterisation of ozone dry deposition to the ocean and its impact in a global climate–chemistry model Ashok K. Luhar, Ian E. Galbally, Matthew T. Woodhouse, and Marcus Thatcher Atmos. Chem. Phys., 17, 3749-3767, doi:10.5194/acp-17-3749-2017, 2017 Dry deposition of tropospheric ozone relates to its destruction at the Earth’s surface. An improved model scheme for such deposition to the ocean is formulated backed up by field data. It results in the oceanic dry deposition of ozone to be 12 % of the global total, which is much lower than the current model estimate of about 30 %. This result has implications for modelling global tropospheric ozone budget and its radiative forcing, and ozone mixing ratios, especially in the Southern Hemisphere.
    Print ISSN: 1680-7367
    Electronic ISSN: 1680-7375
    Topics: Geosciences
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  • 94
    Publication Date: 2017-03-18
    Description: Potential impact of carbonaceous aerosols on the Upper Troposphere and Lower Stratosphere (UTLS) during Asian summer monsoon in a global model simulation Suvarna Fadnavis, Gayatry Kalita, K. Ravi Kumar, Blaz Gasparini, and Jui-Lin Frank Li Atmos. Chem. Phys. Discuss., doi:10.5194/acp-2017-197,2017 Manuscript under review for ACP (discussion: open, 0 comments) In this study, the model simulations show that monsoon convection over the Bay of Bengal, the South China Sea and Southern flanks of the Himalayas transport Asian carbonaceous aerosol into the UTLS. Carbonaceous aerosol induces enhancement in heating rate, vertical velocity and water vapor transport in the UTLS.Doubling of BC + OC aerosols creates an anomalous warming over the TP. It elicits monsoon Hadley circulation and thus increases precipitation over India and northeast China.
    Print ISSN: 1680-7367
    Electronic ISSN: 1680-7375
    Topics: Geosciences
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  • 95
    Publication Date: 2017-03-18
    Description: Ice Crystal Characterization in Cirrus Clouds: A Sun-tracking Camera System and Automated Detection Algorithm for Halo Displays Linda Forster, Meinhard Seefeldner, Matthias Wiegner, and Bernhard Mayer Atmos. Meas. Tech. Discuss., doi:10.5194/amt-2017-17,2017 Manuscript under review for AMT (discussion: open, 0 comments) Halo displays are produced by scattering of sunlight by smooth, hexagonal ice crystals. Consequently, the presence of a halo should contain information on particle shape. This study presents HaloCam, a novel sun-tracking camera system, and an automated detection algorithm to collect and evaluate long-term halo observations. Two-year HaloCam observations revealed that about 25 % of the detected cirrus clouds occurred together with a 22° halo indicating the presence of smooth, hexagonal crystals.
    Print ISSN: 1867-1381
    Electronic ISSN: 1867-8548
    Topics: Geosciences
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  • 96
    Publication Date: 2017-03-18
    Description: Risk assessment of liquefaction-induced hazards using Bayesian network based on standard penetration test data Xiao-Wei Tang, Jiang-Nan Qiu, and Ji-Lei Hu Nat. Hazards Earth Syst. Sci. Discuss., doi:10.5194/nhess-2017-80,2017 Manuscript under review for NHESS (discussion: open, 0 comments) Liquefaction-induced hazards are responsible for considerable damages to engineering structures during major earthquakes. Presently, there is not any effective empirical approach that can assess different liquefaction-induced hazards in one model, such as sand boils, ground cracks, settlement, and lateral spreading, due to the uncertainties and complexity of multiple related factors of seismic liquefaction and liquefaction-induced hazards. This study used Bayesian network method to integrate multiple important factors of seismic liquefaction, sand boils, ground cracks, settlement and lateral spreading into a model based on standard penetration test historical data, so that the constructed Bayesian network model can assess the four different liquefaction-induced hazards together for free fields. In the study case, compared with the artificial neural network technology and the Ishihara and Yoshimine simplified method, the Bayesian network method performed a better classification ability, because its prediction probabilities of Accuracy , Brier score , Recall , Precision , and area under the curve of receiver operating characteristic ( AUC of ROC ) are better, which illustrated that the Bayesian network method is a good alternative tool for risk assessment of liquefaction-induced hazards. Furthermore, the performances of the application of the BN model in estimating liquefaction-induced hazards in the Japan's Northeast Pacific Offshore Earthquake also prove the correctness and reliability of it compared with the liquefaction potential index approach. Except for assessing the severity of hazards induced by soil liquefaction, the proposed Bayesian network model can also predict whether the soil is liquefied or not after an earthquake, and it can deduce the process of a chain reaction of the liquefaction-induced hazards and do backward reasoning, the assessment results from the proposed model could provide informative guidelines for decision-makers to detect damage state of a field induced by liquefaction.
    Print ISSN: 1561-8633
    Electronic ISSN: 1684-9981
    Topics: Geography , Geosciences
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  • 97
    Publication Date: 2017-03-18
    Description: On the deep convection events and Antarctic Bottom Water formation in ocean reanalysis products Wilton Aguiar, Mauricio M. Mata, and Rodrigo Kerr Ocean Sci. Discuss., doi:10.5194/os-2017-9,2017 Manuscript under review for OS (discussion: open, 0 comments) In ocean models, Antarctic Bottom Water (AABW) formation is frequently misrepresented. Hence, assessing the causes of spurious formation is important to assure accurate future simulations. Only one of the state-of-art reanalysis investigated showed AABW formation accurately. Spurious formation in the other two products resulted from opening of large ice-free areas. The relatively accurate AABW formation in one of the products is an important advance on the simulation of deep ocean circulation.
    Print ISSN: 1812-0784
    Electronic ISSN: 1812-0792
    Topics: Geosciences
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  • 98
    facet.materialart.
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    American Physical Society (APS)
    Publication Date: 2017-03-18
    Description: Author(s): A. Di Piazza In a previous article [ Phys. Rev. Lett. 117 , 213201 (2016) ] we have determined the angular resolved and the total energy spectrum of a positron produced via nonlinear Breit-Wheeler pair production by a high-energy photon counterpropagating with respect to a tightly focused laser beam. Here, we first… [Phys. Rev. A 95, 032121] Published Fri Mar 17, 2017
    Keywords: Fundamental concepts
    Print ISSN: 1050-2947
    Electronic ISSN: 1094-1622
    Topics: Physics
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  • 99
    Publication Date: 2017-03-18
    Description: Author(s): Kunkun Wang, George C. Knee, Xiang Zhan, Zhihao Bian, Jian Li, and Peng Xue Testing quantum theory on macroscopic scales is a longstanding challenge whose solution could have a significant impact on physics. For example, laboratory tests (such as those anticipated in nanomechanical or biological systems) may look to rule out macroscopic realism: the idea that the properties… [Phys. Rev. A 95, 032122] Published Fri Mar 17, 2017
    Keywords: Fundamental concepts
    Print ISSN: 1050-2947
    Electronic ISSN: 1094-1622
    Topics: Physics
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  • 100
    facet.materialart.
    Unknown
    American Physical Society (APS)
    Publication Date: 2017-03-18
    Description: Author(s): Chi-Ho Cheng and S.-K. Yip We consider the thermodynamic potential Ω of an N component Fermi gas with a short-range interaction obeying SU ( N ) symmetry. We analyze especially the nonanalytic part of Ω in the temperature T at low T . We examine the temperature range where one can observe this T 4 ln T contribution and discuss how i… [Phys. Rev. A 95, 033619] Published Thu Mar 16, 2017
    Keywords: Matter waves and collective properties of cold atoms and molecules
    Print ISSN: 1050-2947
    Electronic ISSN: 1094-1622
    Topics: Physics
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