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  • Public Library of Science  (34,884)
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  • 1
    Publication Date: 2020-02-12
    Description: Background The proportion of conserved DNA sequences with no clear function is steadily growing in bioinformatics databases. Studies of sequence and structural homology have indicated that many uncharacterized protein domain sequences are variants of functionally described domains. If these variants promote an organism's ecological fitness, they are likely to be conserved in the genome of its progeny and the population at large. The genetic composition of microbial communities in their native ecosystems is accessible through metagenomics. We hypothesize the co-variation of protein domain sequences across metagenomes from similar ecosystems will provide insights into their potential roles and aid further investigation. Methodology/Principal findings We calculated the correlation of Pfam protein domain sequences across the Global Ocean Sampling metagenome collection, employing conservative detection and correlation thresholds to limit results to well-supported hits and associations. We then examined intercorrelations between domains of unknown function (DUFs) and domains involved in known metabolic pathways using network visualization and cluster-detection tools. We used a cautious “guilty-by-association” approach, referencing knowledge-level resources to identify and discuss associations that offer insight into DUF function. We observed numerous DUFs associated to photobiologically active domains and prevalent in the Cyanobacteria. Other clusters included DUFs associated with DNA maintenance and repair, inorganic nutrient metabolism, and sodium-translocating transport domains. We also observed a number of clusters reflecting known metabolic associations and cases that predicted functional reclassification of DUFs. Conclusion/Significance Critically examining domain covariation across metagenomic datasets can grant new perspectives on the roles and associations of DUFs in an ecological setting. Targeted attempts at DUF characterization in the laboratory or in silico may draw from these insights and opportunities to discover new associations and corroborate existing ones will arise as more large-scale metagenomic datasets emerge.
    Repository Name: EPIC Alfred Wegener Institut
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  • 2
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e56393, doi:10.1371/journal.pone.0056393.
    Description: Evolutionary constraints which limit the forces produced during bell contractions of medusae affect the overall medusan morphospace such that jet propulsion is limited to only small medusae. Cubomedusae, which often possess large prolate bells and are thought to swim via jet propulsion, appear to violate the theoretical constraints which determine the medusan morphospace. To examine propulsion by cubomedusae, we quantified size related changes in wake dynamics, bell shape, swimming and turning kinematics of two species of cubomedusae, Chironex fleckeri and Chiropsella bronzie. During growth, these cubomedusae transitioned from using jet propulsion at smaller sizes to a rowing-jetting hybrid mode of propulsion at larger sizes. Simple modifications in the flexibility and kinematics of their velarium appeared to be sufficient to alter their propulsive mode. Turning occurs during both bell contraction and expansion and is achieved by generating asymmetric vortex structures during both stages of the swimming cycle. Swimming characteristics were considered in conjunction with the unique foraging strategy used by cubomedusae.
    Description: This work was supported by an ONR MURI award (N000140810654) and National Science Foundation grant OCE 0623508 to JHC, SPC, JOD. And the work was supported by the Roger Williams University Foundation to Promote Scholarship.
    Repository Name: Woods Hole Open Access Server
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  • 3
    Publication Date: 2022-05-25
    Description: This article is distributed under the terms of the Creative Commons Public Domain. The definitive version was published in PLoS ONE 8 (2013): e55273, doi:10.1371/journal.pone.0055273.
    Description: Georges Bank is a large, shallow feature separating the Gulf of Maine from the Atlantic Ocean. Previous studies demonstrated a strong tidal-mixing front during the warm season on the northern bank margin between thermally stratified water in the Gulf of Maine and mixed water on the bank. Tides transport warm water off the bank during flood tide and cool gulf water onto the bank during ebb tide. During 10 days in August 2009, we mapped frontal temperatures in five study areas along ~100 km of the bank margin. The seabed “frontal zone”, where temperature changed with frontal movment, experienced semidiurnal temperature maxima and minima. The tidal excursion of the frontal boundary between stratified and mixed water ranged 6 to 10 km. This “frontal boundary zone” was narrower than the frontal zone. Along transects perpendicular to the bank margin, seabed temperature change at individual sites ranged from 7.0°C in the frontal zone to 0.0°C in mixed bank water. At time series in frontal zone stations, changes during tidal cycles ranged from 1.2 to 6.1°C. The greatest rate of change (−2.48°C hr−1) occurred at mid-ebb. Geographic plots of seabed temperature change allowed the mapping of up to 8 subareas in each study area. The magnitude of temperature change in a subarea depended on its location in the frontal zone. Frontal movement had the greatest effect on seabed temperature in the 40 to 80 m depth interval. Subareas experiencing maximum temperature change in the frontal zone were not in the frontal boundary zone, but rather several km gulfward (off-bank) of the frontal boundary zone. These results provide a new ecological framework for examining the effect of tidally-driven temperature variability on the distribution, food resources, and reproductive success of benthic invertebrate and demersal fish species living in tidal front habitats.
    Description: This study was supported by salary funds from the regular annual salary budget from Northeast Fisheries Science Center (NEFSC) and United States Geological Survey Woods Hole Coastal and Marine Science Center (USGS WH C&MSC), respectively; ship time funds from the NEFSC annual budget for days-at-sea ship operations; equipment from the NEFSC and USGS WH C&MSC annual equipment budgets.
    Repository Name: Woods Hole Open Access Server
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  • 4
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e54443, doi:10.1371/journal.pone.0054443.
    Description: Species-range expansions are a predicted and realized consequence of global climate change. Climate warming and the poleward widening of the tropical belt have induced range shifts in a variety of marine and terrestrial species. Range expansions may have broad implications on native biota and ecosystem functioning as shifting species may perturb recipient communities. Larger symbiont-bearing foraminifera constitute ubiquitous and prominent components of shallow water ecosystems, and range shifts of these important protists are likely to trigger changes in ecosystem functioning. We have used historical and newly acquired occurrence records to compute current range shifts of Amphistegina spp., a larger symbiont-bearing foraminifera, along the eastern coastline of Africa and compare them to analogous range shifts currently observed in the Mediterranean Sea. The study provides new evidence that amphisteginid foraminifera are rapidly progressing southwestward, closely approaching Port Edward (South Africa) at 31°S. To project future species distributions, we applied a species distribution model (SDM) based on ecological niche constraints of current distribution ranges. Our model indicates that further warming is likely to cause a continued range extension, and predicts dispersal along nearly the entire southeastern coast of Africa. The average rates of amphisteginid range shift were computed between 8 and 2.7 km year−1, and are projected to lead to a total southward range expansion of 267 km, or 2.4° latitude, in the year 2100. Our results corroborate findings from the fossil record that some larger symbiont-bearing foraminifera cope well with rising water temperatures and are beneficiaries of global climate change.
    Description: This work was supported by grants from the German Science Foundation (DFG; www.dfg.de) to ML and SL (LA 884/10-1, LA 884/5-1).
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  • 5
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e56993, doi:10.1371/journal.pone.0056993.
    Description: The mxaF gene, coding for the large (α) subunit of methanol dehydrogenase, is highly conserved among distantly related methylotrophic species in the Alpha-, Beta- and Gammaproteobacteria. It is ubiquitous in methanotrophs, in contrast to other methanotroph-specific genes such as the pmoA and mmoX genes, which are absent in some methanotrophic proteobacterial genera. This study examined the potential for using the mxaF gene as a functional and phylogenetic marker for methanotrophs. mxaF and 16S rRNA gene phylogenies were constructed based on over 100 database sequences of known proteobacterial methanotrophs and other methylotrophs to assess their evolutionary histories. Topology tests revealed that mxaF and 16S rDNA genes of methanotrophs do not show congruent evolutionary histories, with incongruencies in methanotrophic taxa in the Methylococcaceae, Methylocystaceae, and Beijerinckiacea. However, known methanotrophs generally formed coherent clades based on mxaF gene sequences, allowing for phylogenetic discrimination of major taxa. This feature highlights the mxaF gene’s usefulness as a biomarker in studying the molecular diversity of proteobacterial methanotrophs in nature. To verify this, PCR-directed assays targeting this gene were used to detect novel methanotrophs from diverse environments including soil, peatland, hydrothermal vent mussel tissues, and methanotroph isolates. The placement of the majority of environmental mxaF gene sequences in distinct methanotroph-specific clades (Methylocystaceae and Methylococcaceae) detected in this study supports the use of mxaF as a biomarker for methanotrophic proteobacteria.
    Description: This work was supported in part by grants from the U.S. National Science Foundation Ecosystems Studies program (awards # DEB9708092 and DEB0089738).
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  • 6
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e61065, doi:10.1371/journal.pone.0061065.
    Description: Ocean acidification, characterized by elevated pCO2 and the associated decreases in seawater pH and calcium carbonate saturation state (Ω), has a variable impact on the growth and survival of marine invertebrates. Larval stages are thought to be particularly vulnerable to environmental stressors, and negative impacts of ocean acidification have been seen on fertilization as well as on embryonic, larval, and juvenile development and growth of bivalve molluscs. We investigated the effects of high CO2 exposure (resulting in pH = 7.39, Ωar = 0.74) on the larvae of the bay scallop Argopecten irradians from 12 h to 7 d old, including a switch from high CO2 to ambient CO2 conditions (pH = 7.93, Ωar = 2.26) after 3 d, to assess the possibility of persistent effects of early exposure. The survival of larvae in the high CO2 treatment was consistently lower than the survival of larvae in ambient conditions, and was already significantly lower at 1 d. Likewise, the shell length of larvae in the high CO2 treatment was significantly smaller than larvae in the ambient conditions throughout the experiment and by 7 d, was reduced by 11.5%. This study also demonstrates that the size effects of short-term exposure to high CO2 are still detectable after 7 d of larval development; the shells of larvae exposed to high CO2 for the first 3 d of development and subsequently exposed to ambient CO2 were not significantly different in size at 3 and 7 d than the shells of larvae exposed to high CO2 throughout the experiment.
    Description: This work was funded by a Woods Hole Oceanographic Institution Interdisciplinary Award to Mullineaux & McCorkle; and awards to Mullineaux & White, to McCorkle, and to Cohen & McCorkle through NOAA (National Oceanic and Admosphereic Administration) Sea Grant #NA10OAR4170083. White was funded through a National Defense Science and Engineering Graduate Fellowship through the American Society for Engineering Education.
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  • 7
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e76096, doi:10.1371/journal.pone.0076096.
    Description: DNA samples derived from vertebrate skin, bodily cavities and body fluids contain both host and microbial DNA; the latter often present as a minor component. Consequently, DNA sequencing of a microbiome sample frequently yields reads originating from the microbe(s) of interest, but with a vast excess of host genome-derived reads. In this study, we used a methyl-CpG binding domain (MBD) to separate methylated host DNA from microbial DNA based on differences in CpG methylation density. MBD fused to the Fc region of a human antibody (MBD-Fc) binds strongly to protein A paramagnetic beads, forming an effective one-step enrichment complex that was used to remove human or fish host DNA from bacterial and protistan DNA for subsequent sequencing and analysis. We report enrichment of DNA samples from human saliva, human blood, a mock malaria-infected blood sample and a black molly fish. When reads were mapped to reference genomes, sequence reads aligning to host genomes decreased 50-fold, while bacterial and Plasmodium DNA sequences reads increased 8–11.5-fold. The Shannon-Wiener diversity index was calculated for 149 bacterial species in saliva before and after enrichment. Unenriched saliva had an index of 4.72, while the enriched sample had an index of 4.80. The similarity of these indices demonstrates that bacterial species diversity and relative phylotype abundance remain conserved in enriched samples. Enrichment using the MBD-Fc method holds promise for targeted microbiome sequence analysis across a broad range of sample types.
    Description: LAZ and VS were funded by a Brown University Office of the Vice President of Research SEED grant (LAZ) entitled “Tracking disease spread through the wildlife trade: New techniques to identify infectious microbes in aquarium fishes.” SOO and MQ were funded by Wellcome Trust Sanger Institute grant numbers 098051 and 079355/Z/06/Z.
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  • 8
    Publication Date: 2022-05-25
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 7 (2012): e50215, doi:10.1371/journal.pone.0050215.
    Description: The cosmopolitan solitary deep-water scleractinian coral Desmophyllum dianthus (Esper, 1794) was selected as a representative model species of the polyphyletic Caryophylliidae family to (1) examine phylogenetic relationships with respect to the principal Scleractinia taxa, (2) check population structure, (3) test the widespread connectivity hypothesis and (4) assess the utility of different nuclear and mitochondrial markers currently in use. To carry out these goals, DNA sequence data from nuclear (ITS and 28S) and mitochondrial (16S and COI) markers were analyzed for several coral species and for Mediterranean populations of D. dianthus. Three phylogenetic methodologies (ML, MP and BI), based on data from the four molecular markers, all supported D. dianthus as clearly belonging to the “robust” clade, in which the species Lophelia pertusa and D. dianthus not only grouped together, but also shared haplotypes for some DNA markers. Molecular results also showed shared haplotypes among D. dianthus populations distributed in regions separated by several thousands of kilometers and by clear geographic barriers. These results could reflect limited molecular and morphological taxonomic resolution rather than real widespread connectivity. Additional studies are needed in order to find molecular markers and morphological features able to disentangle the complex phylogenetic relationship in the Order Scleractinia and to differentiate isolated populations, thus avoiding the homoplasy found in some morphological characters that are still considered in the literature.
    Description: This study was funded by CTM2009-00496 and CGL2011-23306 projects of the “Ministerio de Ciencia e Innovación” (Spain). Research at sea was partly supported by the European Commission F. P.VI Project HERMES Contract No. GOCE-CT-2005-511234-1) and the EU F.P. VII Project HERMIONE(contract number no. 226354).
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  • 9
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e53889, doi:10.1371/journal.pone.0053889.
    Description: Thecosome pteropods (Mollusca, Gastropoda) are an ecologically important, diverse, and ubiquitous group of holoplanktonic animals that are the focus of intense research interest due to their external aragonite shell and vulnerability to ocean acidification. Characterizing the response of these animals to low pH and other environmental stressors has been hampered by continued uncertainty in their taxonomic identification. An example of this confusion in species assignment is found in the genus Diacavolinia. All members of this genus were originally indentified as a single species, Cavolinia longirostris, but over the past fifty years the taxonomy has been revisited multiple times; currently the genus comprises 22 different species. This study examines five species of Diacavolinia, including four sampled in the Northeast Atlantic (78 individuals) and one from the Eastern tropical North Pacific (15 individuals). Diacavolina were identified to species based on morphological characteristics according to the current taxonomy, photographed, and then used to determine the sequence of the “DNA barcoding” region of the cytochrome c oxidase subunit I (COI). Specimens from the Atlantic, despite distinct differences in shell morphology, showed polyphyly and a genetic divergence of 〈3% (K2P distance) whereas the Pacific and Atlantic samples were more distant (~19%). Comparisons of Diacavolinia spp. with other Cavolinia spp. reveal larger distances (~24%). These results indicate that specimens from the Atlantic comprise a single monophyletic species and suggest possible species-level divergence between Atlantic and Pacific populations. The findings support the maintenance of Diacavolinia as a separate genus, yet emphasize the inadequacy of our current taxonomic understanding of pteropods. They highlight the need for accurate species identifications to support estimates of biodiversity, range extent and natural exposure of these planktonic calcifiers to environmental variability; furthermore, the apparent variation of the pteropods shell may have implications for our understanding of the species’ sensitivity to ocean acidification.
    Description: This material is based upon work supported by the National Science Foundation under Grant Number OCE-0928801. AEM was funded through the WHOI Postdoctoral Scholarship. Support to LBB was provided by the College of Liberal Arts & Sciences, University of Connecticut; and by the Census of Marine Life/Alfred P. Sloan Foundation.
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  • 10
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e63714, doi:10.1371/journal.pone.0063714.
    Description: Anthropogenic carbon dioxide (CO2) is being absorbed into the ocean, altering seawater chemistry, with potentially negative impacts on a wide range of marine organisms. The early life stages of invertebrates with internal and external aragonite structures may be particularly vulnerable to this ocean acidification. Impacts to cephalopods, which form aragonite cuttlebones and statoliths, are of concern because of the central role they play in many ocean ecosystems and because of their importance to global fisheries. Atlantic longfin squid (Doryteuthis pealeii), an ecologically and economically valuable taxon, were reared from eggs to hatchlings (paralarvae) under ambient and elevated CO2 concentrations in replicated experimental trials. Animals raised under elevated pCO2 demonstrated significant developmental changes including increased time to hatching and shorter mantle lengths, although differences were small. Aragonite statoliths, critical for balance and detecting movement, had significantly reduced surface area and were abnormally shaped with increased porosity and altered crystal structure in elevated pCO2-reared paralarvae. These developmental and physiological effects could alter squid paralarvae behavior and survival in the wild, directly and indirectly impacting marine food webs and commercial fisheries.
    Description: This study was supported by a WHOI Student Summer Fellowship and WHOI-MIT Joint Program, the Penzance Endowed Fund, the John E. and Anne W. Sawyer Endowed Fund and NSF Research Grant No. EF-1220034. Additional support came from NSF OCE 1041106 to ALC and DCM, and NOAA Sea Grant award #NA10OAR4170083 to ALC and DCM.
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  • 11
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e79574, doi:10.1371/journal.pone.0079574.
    Description: Transcription factors in the CNC-bZIP family (NFE2, NRF1, NRF2 and NRF3) regulate genes with a wide range of functions in response to both physiological and exogenous signals, including those indicating changes in cellular redox status. Given their role in helping to maintain cellular homeostasis, it is imperative to understand the expression, regulation, and function of CNC-bZIP genes during embryonic development. We explored the expression and function of six nrf genes (nfe2, nrf1a, nrf1b, nrf2a, nrf2b, and nrf3) using zebrafish embryos as a model system. Analysis by microarray and quantitative RT-PCR showed that genes in the nrf family were expressed throughout development from oocytes to larvae. The spatial expression of nrf3 suggested a role in regulating the development of the brain, brachia and pectoral fins. Knock-down by morpholino anti-sense oligonucleotides suggested that none of the genes were necessary for embryonic viability, but nfe2 was required for proper cellular organization in the pneumatic duct and subsequent swim bladder function, as well as for proper formation of the otic vesicles. nrf genes were induced by the oxidant tert-butylhydroperoxide, and some of this response was regulated through family members Nrf2a and Nrf2b. Our results provide a foundation for understanding the role of nrf genes in normal development and in regulating the response to oxidative stress in vertebrate embryos.
    Description: This work was supported, in whole or in part, by National Institutes of Health grants F32ES019832 (to L.M.W.), F32ES017585 (to A.R.T.-L.), R01ES015912 (to J.J.S.), and R01ES016366 (to M.E.H.). This work was also supported by Walter A. and Hope Noyes Smith and the J. Seward Johnson Fund.
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  • 12
    Publication Date: 2022-05-25
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 7 (2012): e49474, doi:10.1371/journal.pone.0049474.
    Description: Patterns of genetic connectivity are increasingly considered in the design of marine protected areas (MPAs) in both shallow and deep water. In the New Zealand Exclusive Economic Zone (EEZ), deep-sea communities at upper bathyal depths (〈2000 m) are vulnerable to anthropogenic disturbance from fishing and potential mining operations. Currently, patterns of genetic connectivity among deep-sea populations throughout New Zealand’s EEZ are not well understood. Using the mitochondrial Cytochrome Oxidase I and 16S rRNA genes as genetic markers, this study aimed to elucidate patterns of genetic connectivity among populations of two common benthic invertebrates with contrasting life history strategies. Populations of the squat lobster Munida gracilis and the polychaete Hyalinoecia longibranchiata were sampled from continental slope, seamount, and offshore rise habitats on the Chatham Rise, Hikurangi Margin, and Challenger Plateau. For the polychaete, significant population structure was detected among distinct populations on the Chatham Rise, the Hikurangi Margin, and the Challenger Plateau. Significant genetic differences existed between slope and seamount populations on the Hikurangi Margin, as did evidence of population differentiation between the northeast and southwest parts of the Chatham Rise. In contrast, no significant population structure was detected across the study area for the squat lobster. Patterns of genetic connectivity in Hyalinoecia longibranchiata are likely influenced by a number of factors including current regimes that operate on varying spatial and temporal scales to produce potential barriers to dispersal. The striking difference in population structure between species can be attributed to differences in life history strategies. The results of this study are discussed in the context of existing conservation areas that are intended to manage anthropogenic threats to deep-sea benthic communities in the New Zealand region.
    Description: This work was funded in part by a Fulbright Fellowship administered by Fulbright New Zealand and the U.S. Department of State, awarded in 2011 to EKB. Funding and support for research expedition was provided by Land Information New Zealand, New Zealand Ministry of Fisheries, NIWA, Census of Marine Life on Seamounts (CenSeam), and the Foundation for Research, Science and Technology. Other research funding was provided by the New Zealand Ministry of Science and Innovation project “Impacts of resource use on vulnerable deep-sea communities” (FRST contract CO1X0906), the National Science Foundation (OCE-0647612), and the Deep Ocean Exploration Institute (Fellowship support to TMS).
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  • 13
    Publication Date: 2022-05-25
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Public Library of Science, doi:10.1371/journal.pone.0052072.
    Description: The low-frequency, powerful vocalizations of blue and fin whales may potentially be detected by conspecifics across entire ocean basins. In contrast, humpback and bowhead whales produce equally powerful, but more complex broadband vocalizations composed of higher frequencies that suffer from higher attenuation. Here we evaluate the active space of high frequency song notes of bowhead whales (Balaena mysticetus) in Western Greenland using measurements of song source levels and ambient noise. Four independent, GPS-synchronized hydrophones were deployed through holes in the ice to localize vocalizing bowhead whales, estimate source levels and measure ambient noise. The song had a mean apparent source level of 185±2 dB rms re 1 µPa @ 1 m and a high mean centroid frequency of 444±48 Hz. Using measured ambient noise levels in the area and Arctic sound spreading models, the estimated active space of these song notes is between 40 and 130 km, an order of magnitude smaller than the estimated active space of low frequency blue and fin whale songs produced at similar source levels and for similar noise conditions. We propose that bowhead whales spatially compensate for their smaller communication range through mating aggregations that co-evolved with broadband song to form a complex and dynamic acoustically mediated sexual display.
    Description: This work was funded by the Oticon Foundation (grant # 08-3469 to Arctic Station, OT). OT and MC were additionally funded by AP Møller og Hustru Chastine Mc-Kinney Møllers Fond til almene Formaal, MS by a PhD scholarship from the Oticon Foundation, FHJ by a Danish Council for Independent Research, Natural Sciences post-doctoral grant, SEP by a grant from the U.S. Office of Naval Research, and PTM by frame grants from the Danish Natural Science Research Council.
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  • 14
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e54069, doi:10.1371/journal.pone.0054069.
    Description: Structural change in both the habitat and reef-associated fish assemblages within spatially managed coral reefs can provide key insights into the benefits and limitations of Marine Protected Areas (MPAs). While MPA zoning effects on particular target species are well reported, we are yet to fully resolve the various affects of spatial management on the structure of coral reef communities over decadal time scales. Here, we document mixed affects of MPA zoning on fish density, biomass and species richness over the 21 years since establishment of the Saba Marine Park (SMP). Although we found significantly greater biomass and species richness of reef-associated fishes within shallow habitats (5 meters depth) closed to fishing, this did not hold for deeper (15 m) habitats, and there was a widespread decline (38% decrease) in live hard coral cover and a 68% loss of carnivorous reef fishes across all zones of the SMP from the 1990s to 2008. Given the importance of live coral for the maintenance and replenishment of reef fishes, and the likely role of chronic disturbance in driving coral decline across the region, we explore how local spatial management can help protect coral reef ecosystems within the context of large-scale environmental pressures and disturbances outside the purview of local MPA management.
    Description: Funding was provided by the Saba Conservation Foundation ((SCF), King Abdullah University of Science and Technology, The Australian National University and Australian Research Council.
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  • 15
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e70966, doi:10.1371/journal.pone.0070966.
    Description: Rising sea temperatures are causing significant destruction to coral reef ecosystems due to coral mortality from thermally-induced bleaching (loss of symbiotic algae and/or their photosynthetic pigments). Although bleaching has been intensively studied in corals, little is known about the causes and consequences of bleaching in other tropical symbiotic organisms. This study used underwater visual surveys to investigate bleaching in the 10 species of anemones that host anemonefishes. Bleaching was confirmed in seven anemone species (with anecdotal reports of bleaching in the other three species) at 10 of 19 survey locations spanning the Indo-Pacific and Red Sea, indicating that anemone bleaching is taxonomically and geographically widespread. In total, bleaching was observed in 490 of the 13,896 surveyed anemones (3.5%); however, this percentage was much higher (19–100%) during five major bleaching events that were associated with periods of elevated water temperatures and coral bleaching. There was considerable spatial variation in anemone bleaching during most of these events, suggesting that certain sites and deeper waters might act as refuges. Susceptibility to bleaching varied between species, and in some species, bleaching caused reductions in size and abundance. Anemones are long-lived with low natural mortality, which makes them particularly vulnerable to predicted increases in severity and frequency of bleaching events. Population viability will be severely compromised if anemones and their symbionts cannot acclimate or adapt to rising sea temperatures. Anemone bleaching also has negative effects to other species, particularly those that have an obligate relationship with anemones. These effects include reductions in abundance and reproductive output of anemonefishes. Therefore, the future of these iconic and commercially valuable coral reef fishes is inextricably linked to the ability of host anemones to cope with rising sea temperatures associated with climate change.
    Description: This work was supported by funding from the Red Sea Research Center at the King Abdullah University of Science and Technology (KAUST), The ARC Centre of Excellence for Coral Reef Studies, the National Science Foundation (OCE 0424688), the Coral Reef Initiatives for the Pacific (CRISP), the TOTAL Foundation, Populations Fractionees et Insulares (PPF EPHE), the Connectivity Working Group of the Global University of Queensland – World Bank – Global Environmental Facility Project, Coral Reef Target Research and Capacity Building for Management, Great Barrier Reef Marine Park Authority, and the Australian Government Department of Sustainability, Environment, Water, Population and Communities. J-P Hobbs is supported by a UWA-AIMS-CSIRO fellowship.
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  • 16
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e78275, doi:10.1371/journal.pone.0078275.
    Description: Anaerobic ammonia oxidation (anammox) as an important nitrogen loss pathway has been reported in marine oxygen minimum zones (OMZs), but the community composition and spatial distribution of anammox bacteria in the eastern tropical North Pacific (ETNP) OMZ are poorly determined. In this study, anammox bacterial communities in the OMZ off Costa Rica (CRD-OMZ) were analyzed based on both hydrazine oxidoreductase (hzo) genes and their transcripts assigned to cluster 1 and 2. The anammox communities revealed by hzo genes and proteins in CRD-OMZ showed a low diversity. Gene quantification results showed that hzo gene abundances peaked in the upper OMZs, associated with the peaks of nitrite concentration. Nitrite and oxygen concentrations may therefore colimit the distribution of anammox bacteria in this area. Furthermore, transcriptional activity of anammox bacteria was confirmed by obtaining abundant hzo mRNA transcripts through qRT-PCR. A novel hzo cluster 2x clade was identified by the phylogenetic analysis and these novel sequences were abundant and widely distributed in this environment. Our study demonstrated that both cluster 1 and 2 anammox bacteria play an active role in the CRD-OMZ, and the cluster 1 abundance and transcriptional activity were higher than cluster 2 in both free-living and particle-attached fractions at both gene and transcriptional levels.
    Description: National Science Foundation (OCE #0961098) Hong Kong Research Grants Council (661911 and 661912) Chinese Academy of Science (SIDSSE-BR-201301).
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  • 17
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e77671, doi:10.1371/journal.pone.0077671.
    Description: Bottlenose dolphins (Tursiops truncatus) produce many vocalisations, including whistles that are unique to the individual producing them. Such “signature whistles” play a role in individual recognition and maintaining group integrity. Previous work has shown that humans can successfully group the spectrographic representations of signature whistles according to the individual dolphins that produced them. However, attempts at using mathematical algorithms to perform a similar task have been less successful. A greater understanding of the encoding of identity information in signature whistles is important for assessing similarity of whistles and thus social influences on the development of these learned calls. We re-examined 400 signature whistles from 20 individual dolphins used in a previous study, and tested the performance of new mathematical algorithms. We compared the measure used in the original study (correlation matrix of evenly sampled frequency measurements) to one used in several previous studies (similarity matrix of time-warped whistles), and to a new algorithm based on the Parsons code, used in music retrieval databases. The Parsons code records the direction of frequency change at each time step, and is effective at capturing human perception of music. We analysed similarity matrices from each of these three techniques, as well as a random control, by unsupervised clustering using three separate techniques: k-means clustering, hierarchical clustering, and an adaptive resonance theory neural network. For each of the three clustering techniques, a seven-level Parsons algorithm provided better clustering than the correlation and dynamic time warping algorithms, and was closer to the near-perfect visual categorisations of human judges. Thus, the Parsons code captures much of the individual identity information present in signature whistles, and may prove useful in studies requiring quantification of whistle similarity.
    Description: Arik Kershenbaum is a Postdoctoral Fellow at the National Institute for Mathematical and Biological Synthesis, an Institute sponsored by the National Science Foundation, the U.S. Department of Homeland Security, and the U.S. Department of Agriculture through NSF Award #EF-0832858, with additional support from The University of Tennessee, Knoxville. Part of this work was conducted while Arik Kershenbaum was provided with a doctoral scholarship by the University of Haifa. Funding for access to the dolphins for recordings was provided by Dolphin Quest and the Chicago Zoological Society.
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  • 18
    Publication Date: 2022-05-26
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 7 (2012): e50221, doi:10.1371/journal.pone.0050221.
    Description: Lymphocytes are a key component of the immune system and their differentiation and function are directly influenced by cancer. We examined peripheral blood lymphocyte (PBL) gene expression as a biomarker of illness and treatment effect using the Affymetrix Human Gene ST1 platform in patients with metastatic renal cell carcinoma (mRCC) who received combined treatment with IL-2, interferon-?-2a and dendritic cell vaccine. We examined gene expression, cytokine levels in patient serum and lymphocyte subsets as determined by flow cytometry (FCM). Pre-treatment PBLs from patients with mRCC exhibit a gene expression profile and serum cytokine profile consistent with inflammation and proliferation not found in healthy donors (HD). PBL gene expression from patients with mRCC showed increased mRNA of genes involved with T-cell and TREG-cell activation pathways, which was also reflected in lymphocyte subset distribution. Overall, PBL gene expression post-treatment (POST) was not significantly different than pre-treatment (PRE). Nevertheless, treatment related changes in gene expression (post-treatment minus pre-treatment) revealed an increased expression of T-cell and B-cell receptor signaling pathways in responding (R) patients compared to non-responding (NR) patients. In addition, we observed down-regulation of TREG-cell pathways post-treatment in R vs. NR patients. While exploratory in nature, this study supports the hypothesis that enhanced inflammatory cytotoxic pathways coupled with blunting of the regulatory pathways is necessary for effective anti-cancer activity associated with immune therapy. This type of analysis can potentially identify additional immune therapeutic targets in patients with mRCC.
    Description: This work was supported by grants from the National Institutes of Health (RO1 CA5648, R21CA112761, P20RR016437, and P30CA023108).
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  • 19
    Publication Date: 2022-05-26
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e59284, doi:10.1371/journal.pone.0059284.
    Description: Toothed whales (Cetacea, odontoceti) use biosonar to navigate their environment and to find and catch prey. All studied toothed whale species have evolved highly directional, high-amplitude ultrasonic clicks suited for long-range echolocation of prey in open water. Little is known about the biosonar signals of toothed whale species inhabiting freshwater habitats such as endangered river dolphins. To address the evolutionary pressures shaping the echolocation signal parameters of non-marine toothed whales, we investigated the biosonar source parameters of Ganges river dolphins (Platanista gangetica gangetica) and Irrawaddy dolphins (Orcaella brevirostris) within the river systems of the Sundarban mangrove forest. Both Ganges and Irrawaddy dolphins produced echolocation clicks with a high repetition rate and low source level compared to marine species. Irrawaddy dolphins, inhabiting coastal and riverine habitats, produced a mean source level of 195 dB (max 203 dB) re 1 µPapp whereas Ganges river dolphins, living exclusively upriver, produced a mean source level of 184 dB (max 191) re 1 µPapp. These source levels are 1–2 orders of magnitude lower than those of similar sized marine delphinids and may reflect an adaptation to a shallow, acoustically complex freshwater habitat with high reverberation and acoustic clutter. The centroid frequency of Ganges river dolphin clicks are an octave lower than predicted from scaling, but with an estimated beamwidth comparable to that of porpoises. The unique bony maxillary crests found in the Platanista forehead may help achieve a higher directionality than expected using clicks nearly an octave lower than similar sized odontocetes.
    Description: This study was made possible through the logistical and field support of the Bangladesh Cetacean Diversity Project of the Wildlife Conservation Society, and funded by frame grants from the Danish Natural Science Foundation to PTM. FHJ was supported by the PhD School of Aquatic Sciences, Denmark, and is currently funded by a postdoctoral fellowship from the Danish Council for Independent Research | Natural Sciences. VMJ was supported by a fellowship of the Wissenschaftskolleg Berlin. PTM was supported by frame grants from the Danish Natural Science Foundation.
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  • 20
    Publication Date: 2022-05-26
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 8 (2013): e56335, doi:10.1371/journal.pone.0056335.
    Description: The deep marine subsurface is a vast habitat for microbial life where cells may live on geologic timescales. Because DNA in sediments may be preserved on long timescales, ribosomal RNA (rRNA) is suggested to be a proxy for the active fraction of a microbial community in the subsurface. During an investigation of eukaryotic 18S rRNA by amplicon pyrosequencing, unique profiles of Fungi were found across a range of marine subsurface provinces including ridge flanks, continental margins, and abyssal plains. Subseafloor fungal populations exhibit statistically significant correlations with total organic carbon (TOC), nitrate, sulfide, and dissolved inorganic carbon (DIC). These correlations are supported by terminal restriction length polymorphism (TRFLP) analyses of fungal rRNA. Geochemical correlations with fungal pyrosequencing and TRFLP data from this geographically broad sample set suggests environmental selection of active Fungi in the marine subsurface. Within the same dataset, ancient rRNA signatures were recovered from plants and diatoms in marine sediments ranging from 0.03 to 2.7 million years old, suggesting that rRNA from some eukaryotic taxa may be much more stable than previously considered in the marine subsurface.
    Description: This work was performed with funding from the Center for Dark Energy Biosphere Investigations (C-DEBI) to William Orsi (OCE-0939564) and The Ocean Life Institute (WHOI) to Virginia Edgcomb (OLI-27071359).
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  • 21
    Publication Date: 2022-05-26
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 7 (2012): e50015, doi:10.1371/journal.pone.0050015.
    Description: Deep-sea hydrothermal vents are subject to major disturbances that alter the physical and chemical environment and eradicate the resident faunal communities. Vent fields are isolated by uninhabitable deep seafloor, so recolonization via dispersal of planktonic larvae is critical for persistence of populations. We monitored colonization near 9°50′N on the East Pacific Rise following a catastrophic eruption in order to address questions of the relative contributions of pioneer colonists and environmental change to variation in species composition, and the role of pioneers at the disturbed site in altering community structure elsewhere in the region. Pioneer colonists included two gastropod species: Ctenopelta porifera, which was new to the vent field, and Lepetodrilus tevnianus, which had been rare before the eruption but persisted in high abundance afterward, delaying and possibly out-competing the ubiquitous pre-eruption congener L. elevatus. A decrease in abundance of C. porifera over time, and the arrival of later species, corresponded to a decrease in vent fluid flow and in the sulfide to temperature ratio. For some species these successional changes were likely due to habitat requirements, but other species persisted (L. tevnianus) or arrived (L. elevatus) in patterns unrelated to their habitat preferences. After two years, disturbed communities had started to resemble pre-eruption ones, but were lower in diversity. When compared to a prior (1991) eruption, the succession of foundation species (tubeworms and mussels) appeared to be delayed, even though habitat chemistry became similar to the pre-eruption state more quickly. Surprisingly, a nearby community that had not been disturbed by the eruption was invaded by the pioneers, possibly after they became established in the disturbed vents. These results indicate that the post-eruption arrival of species from remote locales had a strong and persistent effect on communities at both disturbed and undisturbed vents.
    Description: The authors received funding from National Science Foundation grant OCE-0424953, WHOI Deep Ocean Exploration Institute, WHOI Summer Student Fellow program, Woods Hole Partnership in Education Program, IFREMER and CNRS, Fondation TOTAL Chair Extreme Marine Environment, Biodiversity and Global change.
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  • 22
    Publication Date: 2013-09-07
    Description: J. Tuma, O. Lyutakov, I. Huttel, P. Slepicka, and V. Svorcik Thin poly(methylmethacrylate) films doped by or covalently attached to disperse Red 1 acrylate (DR1) were patterned by laser scanning and simultaneous sample movement in confocal microscope. In both cases, periodical structure due to Marangoni effect is created. Modified polymers surfaces were analy ... [J. Appl. Phys. 114, 093104 (2013)] published Fri Sep 6, 2013.
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-07
    Description: L. Kilanski, K. Szalowski, R. Szymczak, M. Gorska, E. Dynowska et al. We present the studies of electrical transport and magnetic interactions in ZnMnGeAs crystals with low Mn content 0
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  • 24
    Publication Date: 2013-09-07
    Description: G. Y. Gao, Z. B. Yang, W. Huang, H. Z. Zeng, Y. Wang et al. Epitaxial Mn-doped BiFeO (MBFO) thin films were grown on GaAs (001) substrate with SrTiO (STO) buffer layer by pulsed laser deposition. X-ray diffraction results demonstrate that the films show pure (00l) orientation, and MBFO (100)//STO(100), whereas STO (100)//GaAs (110). Piezoresponse force micro ... [J. Appl. Phys. 114, 094106 (2013)] published Fri Sep 6, 2013.
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  • 25
    Publication Date: 2013-09-07
    Description: Yanan Huang, Bangchuan Zhao, Shuai Lin, Wenhai Song, and Yuping Sun The effects of Ir doping on the low-temperature thermal and electrical transport properties of CaCoIrO (0
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  • 26
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-07
    Description: P. Orlandi In this paper, it is demonstrated by DNS of turbulent rough channels that a proportionality between u-tilde| (the wall-normal Reynolds stress u-tilde= at the top of the roughness elements) and the roughness function does exist. This observation confirmed by experiments allows the derivation of a sim ... [Phys. Fluids 25, 110813 (2013)] published Fri Sep 6, 2013.
    Print ISSN: 1070-6631
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-07
    Description: Alessandra Adrover We investigate the effects of secondary (transverse) flows on convection-dominated dispersion of pressure driven, open column laminar flow in a conduit with rectangular cross-section. We show that secondary flows significantly reduce dispersion (enhancing transverse diffusion) in Taylor-Aris regime ... [Phys. Fluids 25, 093601 (2013)] published Fri Sep 6, 2013.
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    Publication Date: 2013-09-07
    Description: Michael E. Mueller and Heinz Pitsch An integrated kinetics-based Large Eddy Simulation (LES) approach for soot evolution in turbulent reacting flows is applied to the simulation of a Pratt & Whitney aircraft gas turbine combustor, and the results are analyzed to provide insights into the complex interactions of the hydrodynamics, mixi ... [Phys. Fluids 25, 110812 (2013)] published Fri Sep 6, 2013.
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  • 29
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    Publication Date: 2013-09-07
    Description: D. M. Valiev, V. Bychkov, V. Akkerman, L.-E. Eriksson, and C. K. Law The present paper addresses the phenomenon of spontaneous acceleration of a premixed flame front propagating in micro-channels, with subsequent deflagration-to-detonation transition. It has recently been shown experimentally [M. Wu, M. Burke, S. Son, and R. Yetter, Proc. Combust. Inst. 31, 2429 (200 ... [Phys. Fluids 25, 096101 (2013)] published Fri Sep 6, 2013.
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  • 30
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    Publication Date: 2013-09-07
    Description: Young-Min Shin and Michael Church A deflecting mode cavity is the integral element for six-dimensional phase-space beam control in bunch compressors and emittance transformers at high energy beam test facilities. RF performance of a high-Q device is, however, highly sensitive to operational conditions, in particular in a cryo-coolin ... [Phys. Plasmas 20, 093101 (2013)] published Fri Sep 6, 2013.
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    Publication Date: 2013-09-07
    Description: Marcus Weinwurm, Simon N. Bland, and Jeremy P. Chittenden Properties of degenerate hydrogen and deuterium (D) at pressures of the order of terapascals are of key interest to Planetary Science and Inertial Confinement Fusion. In order to recreate these conditions in the laboratory, we present a scheme, where a metal liner drives a cylindrically convergent q ... [Phys. Plasmas 20, 092701 (2013)] published Fri Sep 6, 2013.
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  • 32
    Publication Date: 2013-09-07
    Description: Jaetae Seo, Sangram Raut, Mahmoud Abdel-Fattah, Quinton Rice, Bagher Tabibi et al. Time-resolved and temperature-dependent photoluminescence (PL) spectroscopy of ternary compound copper indium disulfide (CuInS, or CIS) core materials, CIS/ZnS coreshells, and quaternary compound ZnCuInS (ZnCIS) revealed their optical properties with spectral, temporal, and thermal characteristics, ... [J. Appl. Phys. 114, 094310 (2013)] published Fri Sep 6, 2013.
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  • 33
    Publication Date: 2013-09-07
    Description: D. H. Feng, X. Q. Pan, X. Li, T. Q. Jia, and Z. R. Sun We report experiments of coherent acoustic phonon generations and detections using a two-color femtosecond pump-probe technique in [001] and [110] oriented ZnTe single crystals. The above-bandgap pump excitation initiates strain waves to yield coherent acoustic phonons. The generation and propagatio ... [J. Appl. Phys. 114, 093513 (2013)] published Fri Sep 6, 2013.
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  • 34
    Publication Date: 2013-09-07
    Description: Kun Gao, S. Prucnal, W. Skorupa, M. Helm, and Shengqiang Zhou GaAs and GaAs based materials have outstanding optoelectronic properties and are widely used as light emitting media in devices. Many approaches have been applied to GaAs to generate luminescence at 0.88, 1.30, and 1.55 [mu]m which are transmission windows of optical fibers. In this paper, we presen ... [J. Appl. Phys. 114, 093511 (2013)] published Fri Sep 6, 2013.
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  • 35
    Publication Date: 2013-09-07
    Description: Xinliang Gao, Quanming Lu, Xin Tao, Yufei Hao, and Shui Wang Alfven waves with a finite amplitude are found to be unstable to a parametric decay in low beta plasmas. In this paper, the parametric decay of a circularly polarized Alfven wave in a proton-electron-alpha plasma system is investigated with one-dimensional (1-D) hybrid simulations. In cases without ... [Phys. Plasmas 20, 092106 (2013)] published Fri Sep 6, 2013.
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  • 36
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    Publication Date: 2013-09-07
    Description: Brian M. Haines, Fernando F. Grinstein, Leslie WelserSherrill, James R. Fincke, and Forrest W. Doss We perform an ensemble of simulations of a laser-driven shear experiment [L. Welser-Sherrill et al., Two laser-driven mix experiments to study reshock and shear, High Energy Density Phys. J. 9(3), 496499 (2013)] in the strong-shock high energy-density regime to better understand material mixing driv ... [Phys. Plasmas 20, 092301 (2013)] published Fri Sep 6, 2013.
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  • 37
    Publication Date: 2013-09-07
    Description: Anthony Ballandras, Guy Weber, Christian Paulin, Jean-Pierre Bellat, and Maud Rotger The adsorption of trichloroethylene, perchloroethylene, and p-xylene on a MFI (Mobile-FIve) zeolite is studied using in situ FTIR spectroscopy at 298 K. Spectra of self-supported zeolites in contact with increasing pressures of pure gas were recorded at equilibrium in the mid-infrared domain. Analys ... [J. Chem. Phys. 139, 091103 (2013)] published Fri Sep 6, 2013.
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    Electronic ISSN: 1089-7690
    Topics: Chemistry and Pharmacology , Physics
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    Publication Date: 2013-09-07
    Description: Y. Zheng (郑轶) , L. N. Su (苏鲁宁) , M. Liu (刘梦) , B. C. Liu (刘必成) , Z. W. Shen (沈忠伟) et al. In typical laser-driven proton acceleration experiments Thomson parabola proton spectrometers are used to measure the proton spectra with very small acceptance angle in specific directions. Stacks composed of CR-39 nuclear track detectors, imaging plates, or radiochromic films are used to measure th ... [Rev. Sci. Instrum. 84, 096103 (2013)] published Fri Sep 6, 2013.
    Print ISSN: 0034-6748
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  • 39
    Publication Date: 2013-09-07
    Description: E. K. Michailidou, M. J. Assael, M. L. Huber, and R. A. Perkins This paper contains new, representative reference equations for the viscosity of n-hexane. The equations are based in part upon a body of experimental data that has been critically assessed for internal consistency and for agreement with theory whenever possible. The correlations are valid from the ... [J. Phys. Chem. Ref. Data 42, 033104 (2013)] published Fri Sep 6, 2013.
    Print ISSN: 0047-2689
    Electronic ISSN: 1529-7845
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  • 40
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    Publication Date: 2013-09-07
    Description: Hong-Biao Zhang, Lin Yang, and San-Xing Guo We construct so(3) algebra associated with the Morse potential and show that these operators obey so(3) commutation relations. A so(3) algebraic method is proposed in order to obtain the eigenvalues and eigenfunctions of the Morse potential. This method exhibits that Cartan operator J, the lowering ... [J. Math. Phys. 54, 092104 (2013)] published Fri Sep 6, 2013.
    Print ISSN: 0022-2488
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  • 41
    Publication Date: 2013-09-10
    Description: H. Perez, T. Cordova-Fraga, S. Lopez-Briones, J. C. Martinez-Espinosa, E. F. Rosas et al. A device's instrumentation for magnetic stimulation on human lymphocytes is presented. This is a new procedure to stimulate growing cells with ferrofluid in vortices of magnetic field. The stimulation of magnetic vortices was provided at five different frequencies, from 100 to 2500 Hz and intensitie ... [Rev. Sci. Instrum. 84, 094701 (2013)] published Mon Sep 9, 2013.
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  • 42
    Publication Date: 2013-09-10
    Description: Kui Wang, Jianchun Jiang, Zhan Si, and Xinyu Liang A solid acid catalyst SO/TiO/La was prepared via sol-gel method using tetrabutyl titanate as TiO precursor. The catalyst simultaneously catalyzed esterification and transesterification resulting in the synthesis of biodiesel from waste cooking oil with high content of free fatty acids as feedstock. ... [J. Renewable Sustainable Energy 5, 052001 (2013)] published Mon Sep 9, 2013.
    Electronic ISSN: 1941-7012
    Topics: Energy, Environment Protection, Nuclear Power Engineering
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  • 43
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    Publication Date: 2013-09-11
    Description: Hanping Hu, Jun Xu, Xiang Xia, Shaobin Wu, Yanlong Liu et al. A singular resonance is discovered in investigating the features of high-frequency photoacoustic (PA) effect with multilayers. Theoretical analysis of its formation is carried out and reveals that it is a result of interaction between the resonance of gas-heat and that of solid-heat, while they happ ... [J. Appl. Phys. 114, 104902 (2013)] published Tue Sep 10, 2013.
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  • 44
    Publication Date: 2013-09-11
    Description: Punam Silwal, Ludi Miao, Jin Hu, Leonard Spinu, Dae Ho Kim et al. We present the thickness dependent structural, magnetic, and transport properties of transparent conducting spinel NiCoO thin films on MgAlO (001) substrates. The structural examination of the films reveals that the epitaxial stain is independent of the films' thickness. Electric and magnetic measur ... [J. Appl. Phys. 114, 103704 (2013)] published Tue Sep 10, 2013.
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  • 45
    Publication Date: 2013-09-11
    Description: Junbo Guo, Zhanghua Gan, Zhihong Lu, Jing Liu, Jingjing Xi et al. Low visible light absorption and high charge carrier recombination rate are two main disadvantages of TiO as a photocatalyst which severely limit its practical applications. To overcome the problems, Fe mono-doped and (Fe+Mo) co-doped TiO were synthesized and studied. It was found that (Fe+Mo) co-do ... [J. Appl. Phys. 114, 104903 (2013)] published Tue Sep 10, 2013.
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    Publication Date: 2013-09-11
    Description: L. Li, A. Nikiforov, Q. Xiong, N. Britun, R. Snyders et al. Recently, plasma jet systems found numerous applications in the field of biomedicine and treatment of temperature-sensitive materials. OH radicals are one of the main active species produced by these plasmas. Present study deals with the investigation of RF atmospheric pressure plasma jet in terms o ... [Phys. Plasmas 20, 093502 (2013)] published Tue Sep 10, 2013.
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  • 47
    Publication Date: 2013-09-11
    Description: H. Comişel, D. Verscharen, Y. Narita, and U. Motschmann We present a method for studying the evolution of plasma turbulence by tracking dispersion relations in the energy spectrum in the wavenumber-frequency domain. We apply hybrid plasma simulations in a simplified two-dimensional geometry to demonstrate our method and its applicability to plasma turbul ... [Phys. Plasmas 20, 090701 (2013)] published Tue Sep 10, 2013.
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  • 48
    Publication Date: 2013-09-11
    Description: Yi Zhang, Hayaki Murata, Yoshimi Hatsukade, and Saburo Tanaka We introduce a method to improve the detection sensitivity for the magnetization M of superparamagnetic nanoparticles (MNP). The M response of MNP to an applied magnetic field H (MH characteristics) could be divided into a linear region and a saturation region, which are separated at a transition po ... [Rev. Sci. Instrum. 84, 094702 (2013)] published Tue Sep 10, 2013.
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  • 49
    Publication Date: 2013-09-11
    Description: J. M. Gao, Y. Liu, W. Li, J. Lu, Y. B. Dong et al. An infrared imaging bolometer diagnostic has been developed recently for the HL-2A tokamak to measure the temporal and spatial distribution of plasma radiation. The three-dimensional tomography, reduced to a two-dimensional problem by the assumption of plasma radiation toroidal symmetry, has been pe ... [Rev. Sci. Instrum. 84, 093503 (2013)] published Tue Sep 10, 2013.
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  • 50
    Publication Date: 2013-09-12
    Description: G. C. Schmidt, D. Hoft, M. Bhuie, K. Haase, M. Bellmann et al. The influence of post-press treatment on the modification of printed source/drain electrodes made of poly(3,4-ethylenedioxythiophene):poly(styrenesulfonate) (PEDOT:PSS) with ethylene glycol is presented. Beside changes of the geometry and the conductivity of these mass printed structures, the work f ... [Appl. Phys. Lett. 103, 113302 (2013)] published Wed Sep 11, 2013.
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  • 51
    Publication Date: 2013-09-12
    Description: Hideki Gotoh, Haruki Sanada, Hiroshi Yamaguchi, and Tetsuomi Sogawa The distinctive effects of coherent phonons (groups of phase-matched phonons) on exciton states are reported by using single dot photoluminescence (PL) spectroscopy in semiconductor quantum dots (QDs). Coherent phonons that were induced with titanium thin metal films close to QDs by irradiating ultr ... [Appl. Phys. Lett. 103, 112104 (2013)] published Wed Sep 11, 2013.
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  • 52
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-12
    Description: O. V. Bilousov, H. Geaney, J. J. Carvajal, V. Z. Zubialevich, P. J. Parbrook et al. Porous GaN layers are grown on silicon from gold or platinum catalyst seed layers, and self-catalyzed on epitaxial GaN films on sapphire. Using a Mg-based precursor, we demonstrate p-type doping of the porous GaN. Electrical measurements for p-type GaN on Si show Ohmic and Schottky behavior from gol ... [Appl. Phys. Lett. 103, 112103 (2013)] published Wed Sep 11, 2013.
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  • 53
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-12
    Description: Roberto Rosati and Fausto Rossi In spite of their intrinsic validity limits, a number of Boltzmann-like simulation schemes are extensively employed in the investigation of semiconductor nanomaterials and nanodevices. Such modeling strategies, based on the neglect of carrier phase coherence, are definitely unable to describe space- ... [Appl. Phys. Lett. 103, 113105 (2013)] published Wed Sep 11, 2013.
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  • 54
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-12
    Description: Mohammad Arif Ishtiaque Shuvo, Tzu-Liang (Bill) Tseng, Md. Ashiqur Rahaman Khan, Hasanul Karim, Philip Morton et al. The study of electrochemical super-capacitors has become one of the most attractive topics in both academia and industry as energy storage devices because of their high power density, long life cycles, and high charge/discharge efficiency. Recently, there has been increasing interest in the developm ... [J. Appl. Phys. 114, 104306 (2013)] published Wed Sep 11, 2013.
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  • 55
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-12
    Description: Atreyee Banerjee, Suman Chakrabarty, and Sarika Maitra Bhattacharyya In this work we explore the interplay between crystallization and glass transition in different binary mixtures by changing their inter-species interaction length and also the composition. We find that only those systems which form bcc crystal in the equimolar mixture and whose global structure for ... [J. Chem. Phys. 139, 104501 (2013)] published Wed Sep 11, 2013.
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  • 56
    Publication Date: 2013-09-12
    Description: S. Vigne, S. Delprat, M. Chaker, and J. Margot It is found that in specific Cl plasma conditions, using a nickel hard mask over calcium barium niobate, CBN (a material particularly difficult to etch) significantly improves both sidewall angles and etching selectivity. This mask hardening is due to the competition between NiCl growth and etching ... [J. Appl. Phys. 114, 103303 (2013)] published Wed Sep 11, 2013.
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  • 57
    Publication Date: 2013-09-12
    Description: S. Agnello, D. Di Francesca, A. Alessi, G. Iovino, M. Cannas et al. The O content and emission properties in silica nanoparticles after thermal treatments in oxygen rich atmosphere have been investigated by Raman and photoluminescence measurements. The nanoparticles have different sizes with average diameter ranging from 7 up to 40 nm. It is found that O concentrati ... [J. Appl. Phys. 114, 104305 (2013)] published Wed Sep 11, 2013.
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  • 58
    Publication Date: 2013-09-12
    Description: S. Maidul Haque, A. Biswas, Debarati Bhattacharya, R. B. Tokas, D. Bhattacharyya et al. Using an indigenously built r.f. magnetron sputtering system, several single layer Ti and Ni films have been deposited at varying deposition conditions. All the samples have been characterized by Grazing Incidence X-ray Reflectivity (GIXR) and Atomic Force Microscopy to estimate their thickness, den ... [J. Appl. Phys. 114, 103508 (2013)] published Wed Sep 11, 2013.
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  • 59
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-12
    Description: Larisa V. Arapkina and Vladimir A. Yuryev Structural models of growing Ge hut clusterspyramids and wedgesare proposed on the basis of data of recent STM investigations of nucleation and growth of Ge huts on the Si(001) surface in the process of molecular beam epitaxy. It is shown that extension of a hut base along directions goes non-unifo ... [J. Appl. Phys. 114, 104304 (2013)] published Wed Sep 11, 2013.
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  • 60
    Publication Date: 2013-09-12
    Description: Jorg Schormann, Pascal Hille, Markus Schafer, Jan Mussener, Pascal Becker et al. Germanium doping of GaN nanowires grown by plasma-assisted molecular beam epitaxy on Si(111) substrates is studied. Time of flight secondary ion mass spectrometry measurements reveal a constant Ge-concentration along the growth axis. A linear relationship between the applied Ge-flux and the resultin ... [J. Appl. Phys. 114, 103505 (2013)] published Wed Sep 11, 2013.
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  • 61
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    Publication Date: 2013-09-12
    Description: Younes Achaoui, Vincent Laude, Sarah Benchabane, and Abdelkrim Khelif The propagation of surface acoustic waves in two-dimensional phononic crystals of pillars on a surface is investigated experimentally for hexagonal and honeycomb lattice symmetries. A random array of pillars is also compared to the periodic phononic crystals. Taking into account that the geometrical ... [J. Appl. Phys. 114, 104503 (2013)] published Wed Sep 11, 2013.
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  • 62
    Publication Date: 2013-09-12
    Description: Yating Chai, Howard C. Wikle, Zhenyu Wang, Shin Horikawa, Steve Best et al. The real-time, in-situ bacteria detection on food surfaces was achieved by using a magnetoelastic biosensor combined with a surface-scanning coil detector. This paper focuses on the coil design for signal optimization. The coil was used to excite the sensor's vibration and detect its resonant freque ... [J. Appl. Phys. 114, 104504 (2013)] published Wed Sep 11, 2013.
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  • 63
    Publication Date: 2013-09-12
    Description: Frederik Westergaard Osterberg, Anders Dahl Henriksen, Giovanni Rizzi, and Mikkel Fougt Hansen Abstract not available. [J. Appl. Phys. 114, 106101 (2013)] published Wed Sep 11, 2013.
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  • 64
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-12
    Description: Tomas Zimmermann and Jiri VaniCek We analyze how the choice of the sampling weight affects efficiency of the Monte Carlo evaluation of classical time autocorrelation functions. Assuming uncorrelated sampling or sampling with constant correlation length, we propose a sampling weight for which the number of trajectories needed for con ... [J. Chem. Phys. 139, 104105 (2013)] published Wed Sep 11, 2013.
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  • 65
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    Publication Date: 2013-09-12
    Description: Y. V. Kalyuzhnyi and P. T. Cummings We propose a second-order thermodynamic perturbation theory for a hard-sphere patchy colloidal model with two doubly bondable patches of type A and B. AB bonding results in the formation of a three-dimensional network of the particles and AA and BB bonding promotes chain formation. The theory is app ... [J. Chem. Phys. 139, 104905 (2013)] published Wed Sep 11, 2013.
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  • 66
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    Publication Date: 2013-09-12
    Description: N. Aizawa, Z. Kuznetsova, and F. Toppan Inequivalent [script N]=2 supersymmetrizations of the [script-l]-conformal Galilei algebra in d-spatial dimensions are constructed from the chiral (2, 2) and the real (1, 2, 1) basic supermultiplets of the [script N]=2 supersymmetry. For non-negative integer and half-integer [script-l], both superal ... [J. Math. Phys. 54, 093506 (2013)] published Wed Sep 11, 2013.
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  • 67
    Publication Date: 2013-09-12
    Description: P. J. Saenz, P. Valluri, K. Sefiane, G. Karapetsas, and O. K. Matar A shallow planar layer of liquid bounded from above by gas is set into motion via the thermocapillary effect resulting from a thermal gradient applied along its interface. Depending on the physical properties of the liquid and the strength of the gradient, the system is prone to departure from its e ... [Phys. Fluids 25, 094101 (2013)] published Wed Sep 11, 2013.
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  • 68
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-12
    Description: Alireza Paknezhad and Davoud Dorranian This article studies the nonlinear Raman shifted third harmonic backscattering of an intense extraordinary laser wave through a homogenous transversely magnetized cold plasma. Due to the relativistic nonlinearity, the plasma dynamic is modified in the presence of transversely magnetic field, and thi ... [Phys. Plasmas 20, 092108 (2013)] published Wed Sep 11, 2013.
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  • 69
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-12
    Description: X. Xia and K. Mohseni Several previous experimental and theoretical studies have shown that a leading edge vortex (LEV) on an airfoil or wing can provide lift enhancement. In this paper, unsteady two-dimensional (2D) potential flow theory is employed to model the flow field of a pitching flat plate wing. A multi-vortices ... [Phys. Fluids 25, 091901 (2013)] published Wed Sep 11, 2013.
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  • 70
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-12
    Description: H. B. Zhuo, X. H. Yang, C. T. Zhou, Y. Y. Ma, X. H. Li et al. The effect of resistivity gradient on laser-driven electron transport and ion acceleration is investigated using collisional particle-in-cell simulation. The study is motivated by recent proton acceleration experiments [Gizzi et al., Phys. Rev. ST Accel. Beams 14, 011301 (2011)], which showed signif ... [Phys. Plasmas 20, 093103 (2013)] published Wed Sep 11, 2013.
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  • 71
    Publication Date: 2013-09-12
    Description: Qing Zang, C. L. Hsieh, Junyu Zhao, Hui Chen, and Fengjuan Li The detector circuit is the core component of filter polychromator which is used for scattering light analysis in Thomson scattering diagnostic, and is responsible for the precision and stability of a system. High signal-to-noise and stability are primary requirements for the diagnostic. Recently, a ... [Rev. Sci. Instrum. 84, 093504 (2013)] published Wed Sep 11, 2013.
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  • 72
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-13
    Description: Junku Liu, Qunqing Li, Mengxin Ren, Lihui Zhang, Mo Chen et al. Charging of insulating substrates is a common problem during Electron Beam lithography (EBL), which deflects the beam and distorts the pattern. A homogeneous, electrically conductive, and transparent graphene layer is used as a discharge layer for EBL processes on insulating substrates. The EBL reso ... [Appl. Phys. Lett. 103, 113107 (2013)] published Thu Sep 12, 2013.
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  • 73
    Publication Date: 2013-09-13
    Description: M. Vyshnepolsky, C. Klein, F. Klasing, A. Hanisch-Blicharski, and M. Horn-von Hoegen Using spot profile analysis low energy electron diffraction, we studied the growth mode and strain state of ultra-thin epitaxial BiSe(111) films grown by molecular beam epitaxy on Si(111). The first layer grows as complete quintuple layer and covers the Si substrate before the next layer nucleates. ... [Appl. Phys. Lett. 103, 111909 (2013)] published Thu Sep 12, 2013.
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  • 74
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-13
    Description: N. Ortega, Ashok Kumar, Oscar Resto, O. A. Maslova, Yu. I. Yuzyuk et al. Epitaxial strain is one of the major factors influencing physical properties of artificial superlattice (SL) structures. One way to control the local stress in epitaxial films is altering the lattice parameters by doping. Superlattices of BT/BaSrTiO (BT/BST) with x = (0, 0.3, 0.4, 0.5, 0.6, 0.7, 1) ... [J. Appl. Phys. 114, 104102 (2013)] published Thu Sep 12, 2013.
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  • 75
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    Publication Date: 2013-09-13
    Description: B. Brennan, R. V. Galatage, K. Thomas, E. Pelucchi, P. K. Hurley et al. InAlAs has the potential to be used as a barrier layer in buried channel quantum well field effect transistor devices due to favorable lattice-matching and carrier confinement properties with InGaAs. Field effect device structures of this nature may also require a high-k oxide deposited on the InAlA ... [J. Appl. Phys. 114, 104103 (2013)] published Thu Sep 12, 2013.
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  • 76
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    Publication Date: 2013-09-13
    Description: Pooja Srivastava, B. J. Nagare, Dilip G. Kanhere, and Prasenjit Sen First-principles electronic structure calculations are performed for the pure and Co-doped PbPdO using plane wave density functional method using different exchange-correlation functionals. These calculations indicate the 25% Co-doped PbPdO to be a spin gapless semiconductor, as proposed earlier [X. ... [J. Appl. Phys. 114, 103709 (2013)] published Thu Sep 12, 2013.
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  • 77
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-13
    Description: M. N. Shneider and M. Pekker A non-thermal mechanism of weak microwave field impact on a nerve fiber is proposed. It is shown that in the range of about 30300 GHz, there are strongly pronounced resonances associated with the excitation of ultrasonic vibrations in the membrane as a result of interaction with electromagnetic radi ... [J. Appl. Phys. 114, 104701 (2013)] published Thu Sep 12, 2013.
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  • 78
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    Publication Date: 2013-09-13
    Description: K. Simeonidis, C. Martinez-Boubeta, Ll. Balcells, C. Monty, G. Stavropoulos et al. Magnetic hyperthermia, an alternative anticancer modality, is influenced by the composition, size, magnetic properties, and degree of aggregation of the corresponding nanoparticle heating agents. Here, we attempt to evaluate the AC magnetic field heating response of Fe-based nanoparticles prepared b ... [J. Appl. Phys. 114, 103904 (2013)] published Thu Sep 12, 2013.
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  • 79
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-13
    Description: Souheil Mouetsi and Abdelillah El Hdiy The 1/f noise is investigated in an epitaxial AlGaAs/GaAs/AlGaAs heterostructure in the temperature range of [4300 K]. The sample is biased at very low voltage to avoid velocity saturation at low temperature. Hooge parameters are determined at very low frequency assuming the absence of correlation b ... [J. Appl. Phys. 114, 104507 (2013)] published Thu Sep 12, 2013.
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  • 80
    Publication Date: 2013-09-13
    Description: V. R. Singh, V. K. Verma, K. Ishigami, G. Shibata, Y. Yamazaki et al. BiFeO (BFO) shows both ferroelectricity and magnetic ordering at room temperature, but its ferromagnetic component, which is due to spin canting, is negligible. Substitution of transition-metal atoms such as Co for Fe is known to enhance the ferromagnetic component in BFO. In order to reveal the ori ... [J. Appl. Phys. 114, 103905 (2013)] published Thu Sep 12, 2013.
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  • 81
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    Publication Date: 2013-09-13
    Description: N. Kotsina, S. Kaziannis, S. Danakas, and C. Kosmidis We report on the selective ionization of oriented nitrous oxide (NO) molecules in gas phase by the use of an intense asymmetric two-color omega/2omega 40 fs laser field. By means of a time-of-flight mass spectrometer the induced NO mass spectra have been recorded as a function of the relative phase ... [J. Chem. Phys. 139, 104313 (2013)] published Thu Sep 12, 2013.
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  • 82
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-13
    Description: Bryan Nichols and Vitaly A. Rassolov The electron correlation energy in a chemical system is defined as a difference between the energy of an exact energy for a given Hamiltonian, and a mean-field, or single determinant, approximation to it. A promising way to model electron correlation is through the expectation value of a linear two- ... [J. Chem. Phys. 139, 104111 (2013)] published Thu Sep 12, 2013.
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  • 83
    Publication Date: 2013-09-13
    Description: Scott Habershon We introduce a new approach for calculating quantum time-correlation functions and time-dependent expectation values in many-body thermal systems; both electronically adiabatic and non-adiabatic cases can be treated. Our approach uses a path integral simulation to sample an initial thermal density m ... [J. Chem. Phys. 139, 104107 (2013)] published Thu Sep 12, 2013.
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  • 84
    Publication Date: 2013-09-13
    Description: Gustavo E. Scuseria, Thomas M. Henderson, and Ireneusz W. Bulik We establish a formal connection between the particle-particle (pp) random phase approximation (RPA) and the ladder channel of the coupled cluster doubles (CCD) equations. The relationship between RPA and CCD is best understood within a Bogoliubov quasiparticle (qp) RPA formalism. This work is a fol ... [J. Chem. Phys. 139, 104113 (2013)] published Thu Sep 12, 2013.
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  • 85
    Publication Date: 2013-09-13
    Description: Liangguo He, Chengliang Pan, Hongbo Wang, and Zhihua Feng We develop a novel approach to match harmonics and vibration modes based on the mechanism of multiple tuning fork structure (MTFS), through which it is promising to realize arbitrary periodical vibrations in the resonant state. A prototype three-layer MTFS with first three harmonics is presented to ... [Rev. Sci. Instrum. 84, 096104 (2013)] published Thu Sep 12, 2013.
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  • 86
    Publication Date: 2013-09-14
    Description: Yue Lin, Yong Zhang, Zhiqiang Liu, Liqin Su, Jihong Zhang et al. Abstract not available. [Appl. Phys. Lett. 103, 119902 (2013)] published Fri Sep 13, 2013.
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  • 87
    Publication Date: 2013-09-14
    Description: D. Haasmann and S. Dimitrijev Based on the insight that the Fermi level in a metaloxidesemiconductor field-effect transistor (MOSFET) channel is set in the conduction band, due to the quantum confinement of the channel electrons, this letter provides an experimental demonstration that the near-interface traps responsible for deg ... [Appl. Phys. Lett. 103, 113506 (2013)] published Fri Sep 13, 2013.
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  • 88
    Publication Date: 2013-09-14
    Description: Akira Nagaoka, Hideto Miyake, Tomoyasu Taniyama, Koichi Kakimoto, and Kenji Yoshino Temperature dependent Hall effect measurements from 20 to 300 K have been performed on the quaternary compounds CuZnSnS (CZTS) single crystals. The conductivity mechanisms can be described by a two-path system using Mott variable range hopping and typical thermal activation conduction. The center le ... [Appl. Phys. Lett. 103, 112107 (2013)] published Fri Sep 13, 2013.
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  • 89
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    American Institute of Physics (AIP)
    Publication Date: 2013-09-14
    Description: Manesh Gopinadhan, Zhen Shao, Yanhui Liu, Sundeep Mukherjee, Ryan C. Sekol et al. We explore finite size effects in the crystallization of a bulk metallic glass with nm-scale dimensions. Nanorods of PtCuNiP are produced by thermoplastic extrusion of supercooled liquid through a nanoporous template. The nanorods exhibit remarkable differences in their crystallization behavior abov ... [Appl. Phys. Lett. 103, 111912 (2013)] published Fri Sep 13, 2013.
    Print ISSN: 0003-6951
    Electronic ISSN: 1077-3118
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  • 90
    Publication Date: 2013-09-14
    Description: A. Bojovschi, J. Scott, and K. Ghorbani An investigation of the interaction between guided electromagnetic waves and carbon fibre reinforced polymer waveguide short circuits is presented. To determine the electromagnetic response of the composite waveguide short circuit, its anisotropic characteristics are considered. The reflection coeff ... [Appl. Phys. Lett. 103, 111910 (2013)] published Fri Sep 13, 2013.
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  • 91
    Publication Date: 2013-09-14
    Description: E. Pagounis, R. Chulist, T. Lippmann, M. Laufenberg, and W. Skrotzki Mechanical and synchrotron diffraction experiments were performed to investigate the temperature dependent structural changes in a Ni-Mn-Ga single crystal. The initial sample exhibits a mixture of seven-layered (7M) and non-modulated (NM) martensites at room temperature. Compression along resulted ... [Appl. Phys. Lett. 103, 111911 (2013)] published Fri Sep 13, 2013.
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  • 92
    Publication Date: 2013-09-14
    Description: I. Tsioutsios, J. Moser, J. A. Plaza, and A. Bachtold We report on the fabrication and operation of a multi-element vibrational structure consisting of two graphene mechanical resonators coupled by a nanotube beam. The whole structure is suspended. Each graphene resonator is clamped by two metal electrodes. The structure is fabricated using a combinati ... [J. Appl. Phys. 114, 104310 (2013)] published Fri Sep 13, 2013.
    Print ISSN: 0021-8979
    Electronic ISSN: 1089-7550
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  • 93
    Publication Date: 2013-09-14
    Description: Marcela F. Silva, Luiz A. S. de Oliveira, Mariani A. Ciciliati, Lais T. Silva, Bruna S. Pereira et al. FeO nanoparticles with sizes ranging from 15 to 53 nm were synthesized by a modified sol-gel method. Maghemite particles as well as particles with admixture of maghemite and hematite were obtained and characterized by XRD, FTIR, UV-Vis photoacoustic and Mossbauer spectroscopy, TEM, and magnetic meas ... [J. Appl. Phys. 114, 104311 (2013)] published Fri Sep 13, 2013.
    Print ISSN: 0021-8979
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  • 94
    Publication Date: 2013-09-14
    Description: Junyan Liu, Alexander Melnikov, and Andreas Mandelis A combined theoretical and experimental approach is reported using spectrally windowed lock-in carrierography imaging (lock-in photoluminescence) under variable illumination intensity to provide quantitative contactless measurements of key electrical parameters (photogenerated current density, J, op ... [J. Appl. Phys. 114, 104509 (2013)] published Fri Sep 13, 2013.
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  • 95
    facet.materialart.
    Unknown
    American Institute of Physics (AIP)
    Publication Date: 2013-09-14
    Description: Marcus A. Khuri and Gilbert Weinstein In this paper, we show how a natural coupling of the Dirac equation with the generalized Jang equation leads to a proof of the rigidity statement in the positive mass theorem with charge, without the maximal slicing condition, provided a solution to the coupled system exists. ... [J. Math. Phys. 54, 092501 (2013)] published Fri Sep 13, 2013.
    Print ISSN: 0022-2488
    Electronic ISSN: 1089-7658
    Topics: Mathematics , Physics
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  • 96
    facet.materialart.
    Unknown
    American Institute of Physics (AIP)
    Publication Date: 2013-09-14
    Description: Andre Unterberger We rely on an analysis of initial states of the wave function associated with the simplest relativistic particlethe Weyl neutrinoto construct two series of representations of SL(2,[openface R]), or of the twofold cover of this group, by operators acting on scalar functions defined on the real line. ... [J. Math. Phys. 54, 093509 (2013)] published Fri Sep 13, 2013.
    Print ISSN: 0022-2488
    Electronic ISSN: 1089-7658
    Topics: Mathematics , Physics
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  • 97
    Publication Date: 2013-09-14
    Description: Giorgos Markou and Dimitris Georgakakis In this study, maize silage was anaerobically mono- and co-digested together with low solid swine wastewater in a novel two-state (liquid/solid) anaerobic digester. The special subject of the two-state digester is that operates with both, liquid and solid fractions, which are present in a segregated ... [J. Renewable Sustainable Energy 5, 053107 (2013)] published Fri Sep 13, 2013.
    Electronic ISSN: 1941-7012
    Topics: Energy, Environment Protection, Nuclear Power Engineering
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  • 98
    Publication Date: 2013-09-14
    Description: Jung Yup Yang, Young Kyoung Ahn, Pil Ho Huh, Jung Gyu Nam, Min Park et al. After producing crystalline Si (c-Si) solar module, the output power of the c-Si module was decreased compared to the total amount of c-Si cells' power due to the increase of series resistance and the light absorption of the cover glass and encapsulant. We define this power loss as cell to module (C ... [J. Renewable Sustainable Energy 5, 052003 (2013)] published Fri Sep 13, 2013.
    Electronic ISSN: 1941-7012
    Topics: Energy, Environment Protection, Nuclear Power Engineering
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  • 99
    Publication Date: 2013-09-14
    Description: Wenjing Qin, Xinrui Xu, Dongyue Liu, Chunyu Ma, Liying Yang et al. ZnO is a promising material used as the electron transport layer in the inverted organic solar cells (IOSCs). However, the electrical or photoelectric properties of ZnO nanoparticles are governed by the surface states of the nanoparticles. Here, we demonstrate that the large number of hydroxyl (-OH) ... [J. Renewable Sustainable Energy 5, 053106 (2013)] published Fri Sep 13, 2013.
    Electronic ISSN: 1941-7012
    Topics: Energy, Environment Protection, Nuclear Power Engineering
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  • 100
    Publication Date: 2013-09-14
    Description: Steven J. Beresh, John F. Henfling, Russell W. Spillers, and Brian O. M. Pruett Data have been acquired from a spanwise array of fluctuating wall pressure sensors beneath a wind tunnel wall boundary layer at Mach 2, then invoking Taylor's hypothesis allows the temporal signals to be converted into a spatial map of the wall pressure field. Different frequency ranges of pressure ... [Phys. Fluids 25, 095104 (2013)] published Fri Sep 13, 2013.
    Print ISSN: 1070-6631
    Electronic ISSN: 1089-7666
    Topics: Physics
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