ALBERT

Notes: The changes in porosity and elastic moduli of YSZ-containing nickel-based anode materials for solid oxide fuel cells were studied as a function of the fraction of reduced NiO. Anode samples were reduced in a gas mixture of 4% hydrogen and 96% argon for different periods of time at 800°C and their Young's and shear moduli were determined afterward at room temperature using resonant ultrasound spectroscopy and impulse excitation. It was found that the magnitude of Young's and shear moduli decreased significantly with increasing fraction of reduced NiO and that the magnitude of the elastic moduli of a fully reduced Ni–YSZ anode was ∼45% lower than that of unreduced NiO–YSZ. Because the elastic moduli of NiO are close to those of Ni, the observed decrease in the magnitude of the elastic moduli was found to be caused mainly by the significant increase in the porosity of the sample as a result of NiO reduction. Expressions are presented for the amount of porosity and the magnitude of the elastic moduli as a function of the fraction of reduced NiO.

Notes: Two- and three-dimensional SiCr/SiC composites have been prepared starting from Tyranno SA(tm) fiber preforms. Preform densification has been performed by a modified preceramic polymer impregnation and pyrolysis (PIP) process consisting of filling the preform large interbundle voids with SiC powder before the PIP process. This step was accomplished by low-pressure infiltration of a SiC powder dilute slurry through the preform thickness. Specimens were further processed with polymer impregnation and pyrolysis to determine the effects on structural, thermal, and mechanical properties of the obtained composites. High-temperature pyrolysis treatment, which promoted polymer derived SiC matrix crystallization, markedly increased thermal diffusivity.

Notes: Carbon is commonly added to sulfate-fined silicate-glass batches to enhance the fining process. Reactions between carbon and Na2SO4 modify the SOx emissions from Na2SO4 decomposition. Fourier-transform infrared (FTIR) spectrometry is used to analyze the emission of air pollutants from the isothermal decomposition of Na2SO4 + C undertaken using thermogravimetric analysis (TGA). The FTIR spectrometer is calibrated using standard gas mixtures containing CO, CO2, SO2, NO, and NO2. The collected spectra are quantified using the classical least-squares (CLS) approximation. The TGA-FTIR system provides SOx, and COx, concentrations versus time data from the isothermal decomposition of Na2SO4, in the presence of a carbon black. Mass spectrometry (MS) complements FTIR by being able to detect SO(g).

Notes: Different ratios of the precursor phases of SrFeO3–x (SFO) and SrMoO4 (SMO) were used to prepare Sr2FeMoO6 (SFMO) by a solid-state reaction. X-ray diffraction was used to identify the phases. A residual SMO was observed to exist in the sample with an SFO/SMO ratio of 0.9:1. The sample with a residual SMO phase had higher resistivity, lower magnetization, but higher low-field magnetoresistance (LFMR). High-resolution transmission electron microscopy was used to identify the compositions and phases. Nanometer-sized amorphous-like clusters of SMO phase were located inside the grains rather than at grain boundaries; however, some boundaries were rich in the strontium ion. The possible mechanisms for the conduction and the increase of LFMR of SFMO are discussed.

Notes: Submicro- and nano-sized liquid-phase-sintered SiC ceramics were mechanically tested by nanoindentation in the peak load range 5–400 mN. The submicro-sized sample showed a marked indentation size effect which the nano-sized samples did not exhibit. The relevance of indentation depth with respect to the microstructural scale has been outlined. In the investigated grain-size range, the hardness dependence on the grain size could be described by a load-dependent inverse Hall–Petch relation. Young's modulus was less microstructure- and load-dependent. Because of the very fine microstructure, the nano-sized SiC materials gave lower elastic values than the submicro-sized SiC ceramic.

Notes: Samples of composition Ba1−xLaxTi1−x/4O3, x= 0, 0.003, 0.03, and 0.10, were prepared by an alkoxide sol–gel route with final firing of ceramics at 1100°C, 2 h in air. All samples showed bulk insulating behavior with no evidence of semiconductivity caused by either direct donor doping or oxygen loss.

Notes: We have studied the rheological property evolution and hydration behavior of white and ordinary portland cement (type I) pastes and concentrated cement–polyelectrolyte suspensions. Cement composition had a marked effect on the elastic property evolution (G′(t)) and hydration behavior of these suspensions in the presence of poly(acrylic acid)/poly(ethylene oxide) copolymer (PAA/PEO), even though their affinity to adsorb such species was nearly identical. Both white and ordinary portland cement pastes exhibited G′0 values of ∼104 Pa and fully reversible G′(t) behavior until the onset of the acceleratory period (t= 2 h), where the pastes stiffened irreversibly. In contrast, cement–PAA/PEO suspensions exhibited G′0 values of ∼1 Pa and G′(t) behavior comprised of both reversible and irreversible features. Interestingly, ordinary portland cement–PAA/PEO suspensions experienced a gel-to-fluid transition on high shear mixing at short hydration times (〈1 h), and the particle network did not rebuild until ∼24 h of hydration. In sharp contrast, white portland cement–PAA/PEO suspensions remained weakly gelled throughout the initial stage of hydration even after high shear mixing. At longer hydration times (〉1 h), both cement–PAA/PEO suspensions exhibited G′i(t) ∼ exp(t/τc) with τc values of 5.6 and 1.3 h for ordinary and white portland cement, respectively. Our observations suggest that hydration phenomena impact interparticle forces during early stage hydration and, ultimately, lead to initial setting through the formation of solid bridges at the contact points between particles within the gelled network.

Notes: A new ceramic freeze-casting technique capable of manufacturing near room temperature with a sublimable vehicle was accomplished. Fluid-concentrated slurries of Al2O3 powder in molten camphene (C10H16) were prepared at 55°C. These slurries were quickly solidified (frozen) at room temperature to yield rigid solid green bodies, followed by frozen camphene removal by sublimation (freeze-drying) with negligible shrinkage. Sintering without any special binder burnout process yielded sintered bodies with over 98% theoretical density. The proposed advantages include (1) elimination of extremely cold temperatures, (2) elimination of troublesome binder burnout process, and (3) fast manufacturing cycle due to quick solidification.

Notes: Dense composites in the Ti-B-N system have been produced by reactive hot pressing of titanium and BN powders. The effect of the addition of a small amount of nickel (1–3 wt%) on the reaction kinetics and densification of TiN–TiB2 (40 vol%) composite has been studied. Composites of ∼99% of theoretical density have been produced at 1600°C under 40 MPa for 30 min with 1% nickel. The hardness and fracture toughness of these composites are 24.5 ± 0.97 GPa and 6.53 ± 0.27 MPa·m1/2, respectively. The microstructural studies on samples produced at lower temperatures indicate the formation of a transient liquid phase, which enhances the kinetics of the reaction and densification of the composite.

Notes: This paper presents new findings on ultrasonic spray pyrolysis of zirconium hydroxyl acetate precursor drops whose sizes were precisely measured using laser light diffraction technique. Precursor concentration plays a predominant role in determination of product particle size. At 0.01 wt% precursor concentration, conventional spray pyrolysis at 750°C using precursor drops 5–8 μm in diameter, generated by an ultrasonic nebulizer at 2.66 MHz, yielded uniform spherical yttria-stabilized zirconia (YSZ) particles 73 nm in diameter measured by scanning electron microscopy. The YSZ particle diameters were much smaller than those predicted by the one-particle-per-drop mechanism. Under similar reaction conditions, the high-throughput ultrasound-modulated two-fluid (UMTF) spray pyrolysis of larger precursor drops (28-μm peak diameter) also yielded spherical dense particles; they were significantly smaller in size than those produced by the low-throughput conventional ultrasonic spray pyrolysis of smaller drops (6.8-μm peak diameter).

Notes: Thermoelectric elements consisting of the layered polycrystalline materials of Al-doped ZnO and NaCo2O4 were prepared using the pulse electric-current sintering (PECS) method at 900°C for 3 min. Direct contact between the polycrystalline Al-doped ZnO and the NaCo2O4 was obtained in a single-step process for the stacked powders. The electrical conductivities of the polycrystalline materials prepared by PECS were higher than those of materials prepared by conventional sintering, despite their porous structure. The thermoelectric voltage of the 1-mol%-Al-doped ZnO and NaCo2O4 polycrystalline element (measuring ∼6 mm × 3 mm × 15 mm) was 83 mV at dT= 500 K, when the junction of the elements was at 800°C.

Notes: Pb(Zr,Ti)O3–Pb(Mn1/3 Nb2/3)O3 (PZT–PMnN) system has been studied for high-power piezoelectric applications. This study investigates this system to find out the composition with high-power density piezoelectric characteristics and low tem-perature coefficient of resonance frequency (TCF). It was found that the composition 0.9PZT–0.1PMnN (Zr/Ti = 0.51/0.49) modified with 6 mol% Sr exhibits a TCF of −8 ppm/°C (−20 to +80°C). Further, the dielectric and piezoelectric properties of this composition are as follows: kp= 0.53; Qm= 800; d33= 274; ε33/ε0= 1290 and tan δ=1.1%, which shows the suitability of this composition for ultrasonic devices used under fluctuating thermal environment.

Notes: Beam bending is an excellent method for measuring low permeabilities (≤10−18 m2) in homogeneous materials, because it is fast, requires no high pressure, and provides a concurrent measurement of the modulus of the material. The method was previously analyzed and substantiated for cylindrical or square beams. Recently, the analysis was extended to include isotropic and transversely isotropic rectangular beams. In this paper, the analysis is applied to measurements performed on cement paste, and it is shown that the solution for isotropic rectangular beams accounts for changes in the hydrodynamic behavior caused by changing the aspect ratio of the sample. The permeability and elastic modulus results are verified through comparison to previous measurements on cylindrical beams.

Notes: The deformation behavior of boron- and carbon-doped β-silicon carbide (B,C-SiC) with an average grain size of 260 ± 18 nm containing 1 wt% boron was investigated by compression testing at elevated temperatures. Extensive grain growth during deformation was observed. The stress–strain curves were compensated for grain growth by assuming power-law type of dependence on grain size and strain rate. The stress exponent n was ∼1.3 and the grain size exponent p was ∼2.7 at temperatures ranging from 1593° to 1758°C. The apparent activation energy of deformation Qd was ∼760 kJ/mol, which was lower than the activation energy for lattice diffusion of silicon and carbon in SiC and higher than that for grain-boundary diffusion of carbon in SiC. These results suggest that the deformation mechanism of the fine-grained B,C-SiC is grain-boundary sliding accommodated by the grain-boundary diffusion.

Notes: Chromium-containing stainless steel (SS) is a prospective material for use as an interconnect in solid oxide fuel cells (SOFCs). However, during operations at high temperatures, the growth of oxide scales causes the performance of the interconnect and SOFC as a whole to deteriorate. The coating of SS 446 with a conducting perovskite is a potential method of slowing the growth of oxide scale and, therefore, improving overall SOFC performance. In the present research, the structural characterization of a pure LaCrO3 thin film on the SS 446 substrates has been performed as a model material that can be used as a barrier coating for the metallic interconnect. The deposition of an amorphous La-Cr-O thin film on SS 446 was performed using radio-frequency (rf) magnetron sputtering. The deposited amorphous film was annealed in air to form the desired perovskite phase. The film underwent an amorphous to LaCrO4 phase transition during annealing at 500°C with further transformation to LaCrO3 orthorhombic phase during annealing at 700°C. A self-organized dendritic structure was reported as a result of the perovskite-phase formation. Although formation of various oxides, such as Fe2O3 and Fe3O4, was observed during the annealing of uncoated SS 446 in air, the coating of SS 446 surface with LaCrO3 film prevented formation of various oxide phases at the interconnect surface. The structural characterization of the films and SS 446 surfaces was accomplished using scanning electron microscopy with energy-dispersive X-ray analysis, X-ray diffractometry, micro-Raman spectroscopy, and nanoindentation.

Notes: The density, surface tension, and viscosity of the melts from the PbO-B2O3-SiO2 system have been measured at temperatures in the range 1073–1473 K. The effect of composition on these properties was also investigated. The density of the melt was found to increase linearly with increasing PbO content. Molar volume was derived from the density data, and its deviation from the additivity of partial molar volumes was calculated. These deviations in molar volume from those obtained from additivity rules have been used along with the ratio of various coordination numbers of boron (as reported by Bray) to discuss the structure of the melts. The surface tension was found to decrease with decreasing SiO2/B2O3 ratio, and to increase in the range of the PbO content between 30 and 60 mol%, showing a maximum at ∼60 mol% PbO, and then decreased with further additions. This result suggested that the surface tension would be affected primarily by the B2O3 content in the range of the PbO content between 30–60 mol%, and mainly by the PbO content in the range of the PbO content 〉60 mol%, respectively. The viscosity of the melt was found to decrease linearly with increasing PbO content. The results obtained indicate that the increase in viscosity with B2O3 was half that of SiO2 (on a molar basis), and an empirical equation has been proposed for the viscosity as a function of mole fraction.

Notes: Core/shell structures have been prepared via a mechanofusion system by employing several kinds of spherical polymers as a core material and Al2O3 powder or a mixture of Al2O3 and SiO2 powders as a shell material. The effect of the kind of core polymers on the quality of the resulting hollow alumina microspheres has been discussed on the basis of the thermal decomposition behavior of spherical polymers used as a core material. A large fraction of hollow alumina microspheres reflecting the shape and the particle size distribution of the core polymer could be fabricated after sintering at 1600°3C for 3 h, when highly cross-linked poly(methyl methacrylate) (PMMA) microspheres with a gel fraction of 99.03% were used as a core polymer, and abrupt firing at temperatures higher than 500°3C was adopted to remove the PMMA microspheres. The addition of 5 mass% SiO2 to the Al2O3 shell layer was found to be useful for maintaining the spherical shell structure during the firing process and for fabricating a large fraction of hollow alumina microspheres after the sintering.

Notes: Well-defined and stoichiometric spherical particles of BaTiO3 of narrow size distribution were produced at 82° and 92°3C by precipitation from chloride solutions in a strong alkaline environment. The size of the particles can be tailored in the range from ≅103 to 70–80 nm by increasing the barium concentration from ≅0.07 to 0.7 mol/L. The particles are composed of tight aggregates resulting from the assembly of several nanocrystals. The size of the nanocrystals decreases from 200–300 to 30–40 nm by increasing reactant concentration. At low barium concentration (≤0.07 mol/L at 82°3C, ≤0.06 mol/L at 92°3C), formation of BaTiO3 is strongly slowed down and nonstoichiometric, Ti-rich powders are produced. Under these conditions, the particles have the tendency to develop a dendritic-like morphology.

Notes: Crystals of δ-Y2Si2O7 (space group P121/c1) were examined using high-temperature powder X-ray diffractometry to determine their unit-cell dimensions from 296 to 1473 K. The lattice deformation induced by thermal expansion was investigated using matrix algebra analysis to determine the directions and magnitudes of the principal distortions (Λi, i= 1,2, and 3). The directions of Λ1 and Λ3 were defined by the acute angle Λ1c, which linearly decreased from 5(2)° to —5.5(3)° with increased temperature from 504 to 1473 K. The Λ2-axis invariably coincided with the crystallographic b-axis. The magnitudes of Λ1 and Λ2 steadily increased to, respectively, 1.0061(1) and 1.0068(1) during heating to 1473 K, while Λ3 remained almost constant for the entire temperature range. The mean principal distortion, Λm (= (Λ1+Λ2+Λ3)/3), steadily increased to 1.0044(1) with increased temperature to 1473 K. The coefficient of mean linear thermal expansion (α) was derived from the mean principal strain (Λm - 1) as α= (Λm - 1)/ΔT. The temperature dependence was determined to be α= 2.03 times 103+ 1.36(T - 296) (10-9 K-1). Provided that the rule-of-mixtures holds for the Y2Si2O7/Y2SiO5 composites as protective coating on SiC substrates, the volume fractions of 0.72-0.77 (70–75 mass%) would be necessary for the Y2Si2O7 component to match the α-values of both materials.

Notes: Microcellular silicon oxycarbide open cell ceramic foams were fabricated from a silicone resin. Microcellular foams, with a cell size ranging from ∼1–80 μm, were fabricated using poly(methyl methacrylate) microbeads as sacrificial templates. The compression strength of the foams decreased with increasing cell size.

Notes: Electroconductive zirconia-toughened mullite (TiN/ZTM) intragranular nanocomposite was fabricated by hot-pressing a powder mixture of nano-sized TiN, ZrO2(2Y), and mullite gel. The material showed a good sinterability and could be highly densified at a low temperature of 1300°3C. Sintering temperature strongly influenced the microstructure and electrical resistivity of the material. The electrical resistivity increased monotonously from 20 Ω-cm to 1.5 times 106°3Cm, as the sintering temperature was increased from 1300° to 1500°3C. TEM results indicated that such a phenomenon could be ascribed to the changes in the microstructure of the material, which led to a decrease in the connectivity of the TiN network in the sample as the sintering temperature was increased.

Notes: Effects of fluids on material removal rate, chipping damage, and surface roughness in the simulated clinical-dental machining of a dental-type glass ceramic were investigated. Significant differences in removal rate were obtained among the fluids investigated, but only a 4 wt% boric acid solution gave a higher removal rate than conventionally used water. Chipping damage was substantially lower for the boric acid and an oil-emulsion coolant compared with other fluids tested. Surface roughness was independent of the fluids used. The results indicate that improvement can be achieved in both material removal rate and machining damage by the appropriate selection of coolant chemistry.

Notes: This paper reviews the structures and properties of 10 binary, ternary, and quaternary crystals within the equilibrium phase diagram of the SiO2–Y2O3–Si3N4 system. They are binary compounds SiO2, Y2O3, Si3N4; ternary compounds Si2N2O, Y2Si2O7, and YSi2O5; and quaternary crystals Y2Si3N4O3 (M-melilite), Y4Si2O7N2, (N-YAM), YSiO2N (wallastonite), and Y10(SiO4)6N2 (N-apatite, N-APT). Although the binary compounds are well-known and extensively studied, the ternary and the quaternary crystals are not. Most of the ternary and the quaternary crystals simply have been referenced as secondary phases in the processing of nitrogen ceramics. Their crystal structures are complex and not precisely determined. In the quaternary crystals, there exists O/N disorder in that the exact atomic positions of the anions cannot be uniquely determined. It is envisioned that a variety of cation–anion bonding configurations exist in these complex crystals. The electronic structure and bonding in these crystals are, therefore, of great interest and are indispensable for a fundamental understanding of structural ceramics. We have used ab initio methods to study the structure and bonding properties of these 10 crystals. For crystals with unknown or incomplete structural information, we use an accurate total energy relaxation scheme to obtain the most likely atomic positions. Based on the theoretically modeled structures, the electronic structure and bonding in these crystals are investigated and related to various local cation–anion bonding configurations. These results are presented in the form of atom-resolved partial density of states, Mulliken effective charges, and bond order values. It is shown that Y–O and Y–N bonding are not negligible and should be a part of the discussion of the overall bonding schemes in these crystals. Spectroscopic properties in the form of complex, frequency-dependent dielectric functions, X-ray absorption near-edge structure (XANES), and the electron energy-loss near-edge structure (ELNES) spectra in these crystals also are calculated and compared. These results are discussed in the context of specific bonding configurations between cations (silicon and yttrium) and anions (oxygen and nitrogen) and their implications on intergranular thin films in polycrystalline Si3N4 containing rare-earth elements.

Notes: Simultaneous synthesis and sintering of hexagonal α-Ti1−x-Alx(N) (0 ≤x≤ 0.08) solid solutions, which contain a small amount of nitrogen, have been performed by a self-propagating high-temperature combustion method under a nitrogen pressure of 4 MPa. Dense materials (∼99% of theoretical) prepared directly from a mixture of elemental (Ti and Al) powders reveal homogeneous microstructure composed of fine grains (12–16 μm). α-Ti1−xAlx(N) (x= 0.02; Ti0.98Al0.02N0.26) exhibits a three-point bending strength σb of 390 MPa, a Vickers hardness Hv of 9.24 GPa, and a fracture toughness KIC of 4.89 MPa·m1/2; their mechanical properties are much improved by doping Al into α-Ti(N), in comparison with those (σb= 245 MPa, Hv= 9.02 GPa, and KIC= 3.77 MPa·m1/2) of α-Ti(N) fabricated under the same conditions.

Notes: Electrophoretic deposition has been used to synthesize nickel–alumina, functionally graded materials from NiO and alumina suspensions in ethanol. Suspension stability and the kinetics of deposition were studied to determine optimum conditions. Deposition starts with an alumina suspension into which a stream of NiO suspension is injected at various flow rates to obtain the desired profiles. The latter were controlled by varying the deposition current density and component flow rate. The green bodies obtained were sintered in Ar/H2 atmosphere to reduce the NiO to nickel. Various gradation profiles were obtained illustrating the facility of EPD to synthesize continuously graded materials. NiO was used as the precursor for nickel to alleviate settling and rough columnar deposit problems.

Notes: The total mean-square error (MSE) of the estimated model, defined as the sum of the standard model variance and the bias variance, is used to define the truncation level of the singular-value decomposition to give a reasonable balance between model resolution and model variance. This balance is determined largely by the data and no further assumptions are necessary except that the bias terms are estimated sufficiently well. This principle has been tested on the 1D magnetotelluric inverse problem with special emphasis on high-frequency radio magnetotelluric (RMT) data. Simulations clearly demonstrate that the method provides a good balance between resolution and variance. Starting from a homogeneous half-space, the best solution is sought for a fixed set of singular values. The model variance is estimated from the sum of the inverse eigenvalues squared, up to a certain threshold, and the bias variance is estimated from the model projections on the remaining eigenvectors. By varying the threshold, the minimum of the MSE is found for an increasing number of fixed singular values until the number of active singular values becomes greater than or equal to the estimated number. As a side-effect, the depth of penetration of a given set of measurements can be estimated very efficiently by simply noting at which depth the final model deviates little from the starting homogeneous half-space model. A suite of synthetic data is inverted and an example of inversion of one site is shown to illustrate how the truncation is carried out as the non-linear inversion process proceeds. A field example with a profile across a plume of contaminated groundwater in the Netherlands shows good agreement with the electrical resistivity obtained in a nearby borehole.

Notes: Faithful recording of the elastic wavefield at the sea-bed is required for quantitative applications of 4C seismic. The accuracy of the recorded vectorial wavefield depends on factors that vary from deployment to deployment. This paper focuses on one such factor: the interaction of the acquisition system with the sea-bed, which is referred to here as coupling. We show, using multi-azimuth data recorded with a cable-based sea-bed acquisition system, whose sensor housing is cylindrically shaped and with the in-line geophone fixed to the cable, that coupling depends on the propagation direction and wave type (P- or S-waves) of the incident wavefield. We show that coupling is more critical for S-waves than for P-waves. Detection of inconsistent coupling using both P- and S-waves is therefore mandatory. A data-driven processing method to compensate for the frequency-dependent coupling response of the cross-line geophone is derived. Its application to field data verifies the effectiveness of the method.

Notes: The combined use of time-lapse PP and PS seismic data is analysed for optimal discrimination between pressure and saturation changes. The theory is based on a combination of the well-known Gassmann model and the geomechanical grain model derived by Hertz and Mindlin. A key parameter in the discrimination process is the opening angle between curves representing constant changes in PP and PS reflectivity plotted against pressure and saturation changes. The optimal discrimination angle in the pressure–saturation space is 90° and this is used to determine optimal offset ranges for both PP and PS data. For typical production scenarios, we find an optimal offset range corresponding to an angle of incidence of 25–30°, for both PP and PS data. For gas we find slightly different results. This means that conventional survey parameters used in marine multicomponent acquisition should be sufficient for the purpose of estimating pressure and fluid saturation changes during production.

Notes: Cross-hole anisotropic electrical and seismic tomograms of fractured metamorphic rock have been obtained at a test site where extensive hydrological data were available. A strong correlation between electrical resistivity anisotropy and seismic compressional-wave velocity anisotropy has been observed. Analysis of core samples from the site reveal that the shale-rich rocks have fabric-related average velocity anisotropy of between 10% and 30%. The cross-hole seismic data are consistent with these values, indicating that observed anisotropy might be principally due to the inherent rock fabric rather than to the aligned sets of open fractures. One region with velocity anisotropy greater than 30% has been modelled as aligned open fractures within an anisotropic rock matrix and this model is consistent with available fracture density and hydraulic transmissivity data from the boreholes and the cross-hole resistivity tomography data. However, in general the study highlights the uncertainties that can arise, due to the relative influence of rock fabric and fluid-filled fractures, when using geophysical techniques for hydrological investigations.

Notes: Shear-wave polarization and time delay are attributes commonly used for fracture detection and characterization. In time-lapse analysis these parameters can be used as indicators of changes in the fracture orientation and density. Indeed, changes in fracture characteristics provide key information for increased reservoir characterization and exploitation. However, relative to the data uncertainty, is the comparison of these parameters over time statistically meaningful? We present the uncertainty in shear-wave polarization and time delay as a function of acquisition uncertainties, such as receiver and source misorientation, miscoupling and band-limited random noise. This study is applied to a time-lapse borehole seismic survey, recorded in Vacuum Field, New Mexico. From the estimated uncertainties for each survey, the uncertainty in the difference between the two surveys is 31° for the shear-wave polarization angle and 4 ms for the shear-wave time delay. Any changes in these parameters greater than these error estimates can be interpreted with confidence. This analysis can be applied to any time-lapse measurement to provide an interval of confidence in the interpretation of shear-wave polarization angles and time splitting.

Notes: A series of downhole magnetometric resistivity (DHMMR) and downhole electromagnetic (DHEM) surveys were conducted near Broken Hill, New South Wales, Australia, and at Zinkgruvan, Sweden, to determine how probe and receiver equipment choices affect the amount of noise visible in borehole MMR and EM data. Noise analyses performed on the data, using the standard deviation to gauge the relative noise levels between different probes and receiver systems, indicate that high noise levels in MMR data result primarily from the use of a three-component EM probe, which has a reduced effective area and hence a higher noise floor compared with a single-component EM probe. High noise, attributable to cultural sources such as nearby power lines, in either MMR or EM data can be reduced through the use of full-waveform, multipurpose receiver systems. These systems allow for the use of tapered stacking, which is a more effective method of eliminating coherent noise associated with power-line transients than the boxcar-stacking method used by traditional receiver systems.

Notes: Interlayer slipping breccia-type gold deposit – a new type of gold deposit, defined recently in the northern margin of the Jiaolai Basin, Shandong Province, China – occurs in interlayer slip faults distributed along the basin margin. It has the features of large orebody thickness (ranging from 14 m to 46 m, with an average thickness of 30 m), shallow embedding (0–50 m thickness of cover), low tenor of gold ore (ranging from 3 g/t to 5 g/t), easy mining and ore dressing. This type of gold deposit has promising metallogenic forecasting and potential for economic exploitation.A ground gamma-ray survey in the Pengjiakuang gold-ore district indicates that the potassium/thorium ratio is closely related to the mineralization intensity, i.e. the larger the potassium/thorium ratio, the higher the mineralization. The gold mineralized alteration zone was defined by a potassium/thorium ratio of 0.35. A seismic survey confirms the location of the top and bottom boundaries and images various features within the Pengjiakuang gold mineralization belt. The gold-bearing shovel slipped belt dips to the south at an angle of 50–55° at the surface and 15–20° at depth. The seismic profile is interpreted in terms of a structural band on the seismic section characterized by a three-layered model. The upper layer is represented by weakly discontinuous reflections that represent the overlying conglomerates. A zone of stronger reflections representing the interlayer slip fault (gold-bearing mineralized zone) is imaged within the middle of the section, while the strongest reflections are in the lower part of the section and represent metamorphic rocks at depth. At the same time, the seismic reflection survey confirms the existence of a granite body at depth, indicating that ore-forming fluids may be related to the granite. A CSAMT survey showed that the gold-bearing mineralized zone is a conductive layer and contains a low-resistivity anomaly ranging from 2 Ωm to 200 Ωm.

Notes: The elastic properties and anisotropy of shales are strongly influenced by the degree of alignment of the grain scale texture. In general, an orientation distribution function (ODF) can be used to describe this alignment, which, in practice, can be characterized by two Legendre coefficients. We discuss various statistical ODFs that define the alignment by spreading from a mean value; in particular, the Gaussian, Fisher and Bingham distributions. We compare the statistical models with an ODF resulting from pure vertical compaction (no shear strain) of a sediment. The compaction ODF may be used to estimate how the elastic properties and anisotropy evolve due to burial of clayey sediments.Our study shows that the three statistical ODFs produce almost identical correspondence between the two Legendre coefficients as a function of the spreading parameter, so that the spreading parameter of one ODF can be converted to the spreading parameter of another ODF. In most cases it is then sufficient to apply the spreading parameter for the ODF instead of the two Legendre coefficients. The effect of compaction on the ODF gives a slightly different correspondence between the two Legendre coefficients from that for the other models. In principle, this opens up the possibility of distinguishing anisotropy effects due to compaction from those due to other processes.We also study reflection amplitudes versus angle of incidence (AVA) for all wave modes, where shales having various ODFs overlie an isotropic medium. The AVA responses are modelled using both exact and approximation formulae, and their intercepts and gradients are compared. The modelling shows that the S-wave velocity is sensitive to any perturbation in the spreading parameter, while the P-wave velocity becomes increasingly sensitive to a perturbation of a less ordered system. Similar observations are found for the AVA of the P-P and P-SV waves. Modelling indicates that a combined use of the amplitude versus offset of P-P and P-SV reflected waves may reveal certain grain scale alignment properties of shale-like rocks.

Notes: Although it is believed that natural fracture sets predominantly have near-vertical orientation, oblique stresses and some other mechanisms may tilt fractures away from the vertical. Here, we examine an effective medium produced by a single system of obliquely dipping rotationally invariant fractures embedded in a transversely isotropic with a vertical symmetry axis (VTI) background rock. This model is monoclinic with a vertical symmetry plane that coincides with the dip plane of the fractures.Multicomponent seismic data acquired over such a medium possess several distinct features that make it possible to estimate the fracture orientation. For example, the vertically propagating fast shear wave (and the fast converted PS-wave) is typically polarized in the direction of the fracture strike. The normal-moveout (NMO) ellipses of horizontal reflection events are co-orientated with the dip and strike directions of the fractures, which provides an independent estimate of the fracture azimuth. However, the polarization vector of the slow shear wave at vertical incidence does not lie in the horizontal plane – an unusual phenomenon that can be used to evaluate fracture dip. Also, for oblique fractures the shear-wave splitting coefficient at vertical incidence becomes dependent on fracture infill (saturation).A complete medium-characterization procedure includes estimating the fracture compliances and orientation (dip and azimuth), as well as the Thomsen parameters of the VTI background. We demonstrate that both the fracture and background parameters can be obtained from multicomponent wide-azimuth data using the vertical velocities and NMO ellipses of PP-waves and two split SS-waves (or the traveltimes of PS-waves) reflected from horizontal interfaces. Numerical tests corroborate the accuracy and stability of the inversion algorithm based on the exact expressions for the vertical and NMO velocities.

Notes: The azimuth moveout (AMO) operator in homogeneous transversely isotropic media with a vertical symmetry axis (VTI), as in isotropic media, has an overall skewed saddle shape. However, the AMO operator in anisotropic media is complicated; it includes, among other things, triplications at low angles. Even in weaker anisotropies, with the anisotropy parameter η= 0.1 (10% anisotropy), the AMO operator is considerably different from the isotropic operator, although free of triplications. The structure of the operator in VTI media (positive η) is stretched (has a wider aperture) compared with operators in isotropic media, with the amount of stretch being dependent on the strength of anisotropy. If the medium is both vertically inhomogeneous, i.e. the vertical velocity is a function of depth (v(z)), and anisotropic, which is a common combination in practical problems, the shape of the operator again differs from that for isotropic media. However, the difference in the AMO operator between the homogeneous and the v(z) cases, even for anisotropic media, is small. Stated simply, anisotropy influences the shape and aperture of the AMO operator far more than vertical inhomogeneity does.

Notes: The attenuation of ground-penetrating radar (GPR) energy in the subsurface decreases and shifts the amplitude spectrum of the radar pulse to lower frequencies (absorption) with increasing traveltime and causes also a distortion of wavelet phase (dispersion). The attenuation is often expressed by the quality factor Q. For GPR studies, Q can be estimated from the ratio of the real part to the imaginary part of the dielectric permittivity.We consider a complex power function of frequency for the dielectric permittivity, and show that this dielectric response corresponds to a frequency-independent-Q or simply a constant-Q model. The phase velocity (dispersion relationship) and the absorption coefficient of electromagnetic waves also obey a frequency power law. This approach is easy to use in the frequency domain and the wave propagation can be described by two parameters only, for example Q and the phase velocity at an arbitrary reference frequency. This simplicity makes it practical for any inversion technique. Furthermore, by using the Hilbert transform relating the velocity and the absorption coefficient (which obeys a frequency power law), we find the same dispersion relationship for the phase velocity. Both approaches are valid for a constant value of Q over a restricted frequency-bandwidth, and are applicable in a material that is assumed to have no instantaneous dielectric response.Many GPR profiles acquired in a dry aeolian environment have shown a strong reflectivity inside dunes. Changes in water content are believed to be the origin of this reflectivity. We model the radar reflections from the bottom of a dry aeolian dune using the 1D wavelet modelling method. We discuss the choice of the reference wavelet in this modelling approach. A trial-and-error match of modelled and observed data was performed to estimate the optimum set of parameters characterizing the materials composing the site. Additionally, by combining the complex refractive index method (CRIM) and/or Topp equations for the bulk permittivity (dielectric constant) of moist sandy soils with a frequency power law for the dielectric response, we introduce them into the expression for the reflection coefficient. Using this method, we can estimate the water content and explain its effect on the reflection coefficient and on wavelet modelling.

Notes: The forward computation of the gravitational and magnetic fields due to a 3D body with an arbitrary boundary and continually varying density or magnetization is an important problem in gravitational and magnetic prospecting. In order to solve the inverse problem for the arbitrary components of the gravitational and magnetic anomalies due to an arbitrary 3D body under complex conditions, including an uneven observation surface, the existence of background anomalies and very little or no a priori information, we used a spherical coordinate system to systematically investigate forward methods for such anomalies and developed a series of universal spherical harmonic expansions of gravitational and magnetic fields. For the case of a 3D body with an arbitrary boundary and continually varying magnetization, we have also given the surface integral expressions for the common spherical harmonic coefficients in the expansion of the magnetic field due to the body, and a very precise numerical integral algorithm to calculate them. Thus a simple and effective method of solving the forward problem for magnetic fields due to 3D bodies of this kind has been found, and in this way a foundation is laid for solving the inverse problem of these magnetic fields. In addition, by replacing the parameters and unit vectors in the spherical harmonic expansion of a magnetic field by gravitational parameters and a downward unit vector, we have also derived a forward method for the gravitational field (similar to that for the magnetic case) of a 3D body with an arbitrary boundary and continually varying density.

Notes: 2.5D modelling approximates 3D wave propagation in the dip-direction of a 2D geological model. Attention is restricted to raypaths for waves propagating in a plane. In this way, fast inversion or migration can be performed. For velocity analysis, this reduction of the problem is particularly useful.We review 2.5D modelling for Born volume scattering and Born–Helmholtz surface scattering. The amplitudes are corrected for 3D wave propagation, taking into account both in-plane and out-of-plane geometrical spreading. We also derive some new inversion/migration results. An AVA-compensated migration routine is presented that is simplified compared with earlier results. This formula can be used to create common-image gathers for use in velocity analysis by studying the residual moveout. We also give a migration formula for the energy-flux-normalized plane-wave reflection coefficient that models large contrast in the medium parameters not treated by the Born and the Born–Helmholtz equation results. All results are derived using the generalized Radon transform (GRT) directly in the natural coordinate system characterized by scattering angle and migration dip. Consequently, no Jacobians are needed in their calculation.Inversion and migration in an orthorhombic medium or a transversely isotropic (TI) medium with tilted symmetry axis are the lowest symmetries for practical purposes (symmetry axis is in the plane). We give an analysis, using derived methods, of the parameters for these two types of media used in velocity analysis, inversion and migration. The kinematics of the two media involve the same parameters, hence there is no distinction when carrying out velocity analysis. The in-plane scattering coefficient, used in the inversion and migration, also depends on the same parameters for both media. The out-of-plane geometrical spreading, necessary for amplitude-preserving computations, for the TI medium is dependent on the same parameters that govern in-plane kinematics. For orthorhombic media, information on additional parameters is required that is not needed for in-plane kinematics and the scattering coefficients.Resolution analysis of the scattering coefficient suggests that direct inversion by GRT yields unreliable parameter estimates. A more practical approach to inversion is amplitude-preserving migration followed by AVA analysis.SYMBOLS AND NOTATIONA list of symbols and notation is given in Appendix D.

Notes: A strategy for multiple removal consists of estimating a model of the multiples and then adaptively subtracting this model from the data by estimating shaping filters. A possible and efficient way of computing these filters is by minimizing the difference or misfit between the input data and the filtered multiples in a least-squares sense. Therefore, the signal is assumed to have minimum energy and to be orthogonal to the noise. Some problems arise when these conditions are not met. For instance, for strong primaries with weak multiples, we might fit the multiple model to the signal (primaries) and not to the noise (multiples). Consequently, when the signal does not exhibit minimum energy, we propose using the L1-norm, as opposed to the L2-norm, for the filter estimation step. This choice comes from the well-known fact that the L1-norm is robust to ‘large’ amplitude differences when measuring data misfit. The L1-norm is approximated by a hybrid L1/L2-norm minimized with an iteratively reweighted least-squares (IRLS) method. The hybrid norm is obtained by applying a simple weight to the data residual. This technique is an excellent approximation to the L1-norm. We illustrate our method with synthetic and field data where internal multiples are attenuated. We show that the L1-norm leads to much improved attenuation of the multiples when the minimum energy assumption is violated. In particular, the multiple model is fitted to the multiples in the data only, while preserving the primaries.

Notes: Sonic techniques in geophysical prospecting involve elastic wave velocity measurements that are performed by placing acoustic transmitters and receivers in a fluid-filled borehole. The signals recorded at the receivers are processed to obtain compressional- and shear-wave velocities in the surrounding formation. These velocities are generally used in seismic surveys for the time-to-depth conversion and other formation parameters, such as porosity and lithology. Depending upon the type of transmitter used (e.g. monopole or dipole) and as a result of eccentering, it is possible to excite axisymmetric (n= 0), flexural (n= 1) and quadrupole (n= 2) families of modes propagating along the borehole. We present a study of various propagating and leaky modes that includes their dispersion and attenuation characteristics caused by radiation into the surrounding formation. A knowledge of propagation characteristics of borehole modes helps in a proper selection of transmitter bandwidth for suppressing unwanted modes that create problems in the inversion for the compressional- and shear-wave velocities from the dispersive arrivals. It also helps in the design of a transmitter for a preferential excitation of a given mode in order to reduce interference with drill-collar or drilling noise for sonic measurements-while-drilling. Computational results for the axisymmetric family of modes in a fast formation with a shear-wave velocity of 2032 m/s show the existence of Stoneley, pseudo-Rayleigh and anharmonic cut-off modes. In a slow formation with a shear-wave velocity of 508 m/s, we find the existence of the Stoneley mode and the first leaky compressional mode which cuts in at approximately the same normalized frequency ωa/VS= 2.5 (a is the borehole radius) as that of the fast formation. The corresponding modes among the flexural family include the lowest-order flexural and anharmonic cut-off modes. For both the fast and slow formations, the first anharmonic mode cuts in at a normalized frequency ωa/VS= 1.5 approximately. Cut-off frequencies of anharmonic modes are inversely proportional to the borehole radius in the absence of any tool. The borehole quadrupole mode can also be used for estimating formation shear slownesses. The radial depth of investigation with a quadrupole mode is marginally less than that of a flexural mode because of its higher frequency of excitation.

Notes: A series of time-lapse seismic cross-well and single-well experiments were conducted in a diatomite reservoir to monitor the injection of CO2 into a hydrofracture zone, based on P- and S-wave data. A high-frequency piezo-electric P-wave source and an orbital-vibrator S-wave source were used to generate waves that were recorded by hydrophones as well as 3-component geophones. During the first phase the set of seismic experiments was conducted after the injection of water into the hydrofractured zone. The set of seismic experiments was repeated after a time period of seven months during which CO2 was injected into the hydrofractured zone. The questions to be answered ranged from the detectability of the geological structure in the diatomic reservoir to the detectability of CO2 within the hydrofracture. Furthermore, it was intended to determine which experiment (cross-well or single-well) is best suited to resolve these features.During the pre-injection experiment, the P-wave velocities exhibited relatively low values between 1700 and 1900 m/s, which decreased to 1600–1800 m/s during the post-injection phase (−5%). The analysis of the pre-injection S-wave data revealed slow S-wave velocities between 600 and 800 m/s, while the post-injection data revealed velocities between 500 and 700 m/s (−6%). These velocity estimates produced high Poisson's ratios between 0.36 and 0.46 for this highly porous (∼50%) material. Differencing post- and pre-injection data revealed an increase in Poisson's ratio of up to 5%. Both velocity and Poisson's ratio estimates indicate the dissolution of CO2 in the liquid phase of the reservoir accompanied by an increase in pore pressure.The single-well data supported the findings of the cross-well experiments. P- and S-wave velocities as well as Poisson's ratios were comparable to the estimates of the cross-well data.The cross-well experiment did not detect the presence of the hydrofracture but appeared to be sensitive to overall changes in the reservoir and possibly the presence of a fault. In contrast, the single-well reflection data revealed an arrival that could indicate the presence of the hydrofracture between the source and receiver wells, while it did not detect the presence of the fault, possibly due to out-of-plane reflections.

Notes: Residual dipolar couplings (RDCs) have recently emerged as a new tool in nuclear magnetic resonance (NMR) with which to study macromolecular structure and function in a solution environment. RDCs are complementary to the more conventional use of NOEs to provide structural information. While NOEs are local-distance restraints, RDCs provide long-range orientational information. RDCs are now widely utilized in structure calculations. Increasingly, they are being used in novel applications to address complex issues in structural biology such as the accurate determination of the global structure of oligonucleotides and the relative orientation of protein domains. This review briefly describes the theory and methods for obtaining RDCs and then describes the range of biological applications where RDCs have been used.

Notes: Views of how cell membranes are organized are presently changing. The lipid bilayer that constitutes these membranes is no longer understood to be a homogeneous fluid. Instead, lipid assemblies, termed rafts, have been introduced to provide fluid platforms that segregate membrane components and dynamically compartmentalize membranes. These assemblies are thought to be composed mainly of sphingolipids and cholesterol in the outer leaflet, somehow connected to domains of unknown composition in the inner leaflet. Specific classes of proteins are associated with the rafts. This review critically analyzes what is known of phase behavior and liquid-liquid immiscibility in model systems and compares these data with what is known of domain formation in cell membranes.

Notes: Turbulence affects the structure and motions of nearly all temperature and density regimes in the interstellar gas. This two-part review summarizes the observations, theory, and simulations of interstellar turbulence and their implications for many fields of astrophysics. The first part begins with diagnostics for turbulence that have been applied to the cool interstellar medium and highlights their main results. The energy sources for interstellar turbulence are then summarized along with numerical estimates for their power input. Supernovae and superbubbles dominate the total power, but many other sources spanning a large range of scales, from swing-amplified gravitational instabilities to cosmic ray streaming, all contribute in some way. Turbulence theory is considered in detail, including the basic fluid equations, solenoidal and compressible modes, global inviscid quadratic invariants, scaling arguments for the power spectrum, phenomenological models for the scaling of higher-order structure functions, the direction and locality of energy transfer and cascade, velocity probability distributions, and turbulent pressure. We emphasize expected differences between incompressible and compressible turbulence. Theories of magnetic turbulence on scales smaller than the collision mean free path are included, as are theories of magnetohydrodynamic turbulence and their various proposals for power spectra. Numerical simulations of interstellar turbulence are reviewed. Models have reproduced the basic features of the observed scaling relations, predicted fast decay rates for supersonic MHD turbulence, and derived probability distribution functions for density. Thermal instabilities and thermal phases have a new interpretation in a supersonically turbulent medium. Large-scale models with various combinations of self-gravity, magnetic fields, supernovae, and star formation are beginning to resemble the observed interstellar medium in morphology and statistical properties. The role of self-gravity in turbulent gas evolution is clarified, leading to new paradigms for the formation of star clusters, the stellar mass function, the origin of stellar rotation and binary stars, and the effects of magnetic fields. The review ends with a reflection on the progress that has been made in our understanding of the interstellar medium and offers a list of outstanding problems.

Notes: Observation of cooling neutron stars can potentially provide information about the states of matter at supernuclear densities. We review physical properties important for cooling such as neutrino emission processes and superfluidity in the stellar interior, surface envelopes of light elements owing to accretion of matter, and strong surface magnetic fields. The neutrino processes include the modified Urca process and the direct Urca process for nucleons and exotic states of matter, such as a pion condensate, kaon condensate, or quark matter. The dependence of theoretical cooling curves on physical input and observations of thermal radiation from isolated neutron stars are described. The comparison of observation and theory leads to a unified interpretation in terms of three characteristic types of neutron stars: high-mass stars, which cool primarily by some version of the direct Urca process; low-mass stars, which cool via slower processes; and medium-mass stars, which have an intermediate behavior. The related problem of thermal states of transiently accreting neutron stars with deep crustal burning of accreted matter is discussed in connection with observations of soft X-ray transients. Observations imply that some stars cool more rapidly than can be explained on the basis of nonsuperfluid neutron star models cooling via the modified Urca process, whereas other star cool less rapidly. We describe possible theoretical models that are consistent with observations.

Notes: We review recent theoretical results on the formation of the first stars in the universe, and emphasize related open questions. In particular, we discuss the initial conditions for Population III star formation, as given by variants of the cold dark matter cosmology. Numerical simulations have investigated the collapse and the fragmentation of metal-free gas, showing that the first stars were predominantly very massive. The exact determination of the stellar masses, and the precise form of the primordial initial mass function, is still hampered by our limited understanding of the accretion physics and the protostellar feedback effects. We address the importance of heavy elements in bringing about the transition from an early star formation mode dominated by massive stars to the familiar mode dominated by low-mass stars at later times. We show how complementary observations, both at high redshifts and in our local cosmic neighborhood, can be utilized to probe the first epoch of star formation.

Notes: Until the late 1990s the rich Hyades and the sparse UMa clusters were the only coeval, comoving concentrations of stars known within 60 pc of Earth. Both are hundreds of millions of years old. Then beginning in the late 1990s the TW Hydrae Association, the Tucana/Horologium Association, the beta Pictoris Moving Group, and the AB Doradus Moving Group were identified within ~60 pc of Earth, and the eta Chamaeleontis cluster was found at 97 pc. These young groups (ages 8-50 Myr), along with other nearby, young stars, will enable imaging and spectroscopic studies of the origin and early evolution of planetary systems.

Notes: GRS 1915+105-the first stellar-scale, highly relativistic jet source identified-is a key system for our understanding of the disc-jet coupling in accreting black hole systems. Comprehending the coupling between inflow and outflow in this source not only is important for X-ray binary systems but has a broader relevance for studies of active galactic nuclei and gamma-ray bursts. In this paper, we present a detailed review of the observational properties of the system, as established in the decade since its discovery. We attempt to place it in context by a detailed comparison with other sources, and construct a simple model for the disc-jet coupling, which may be more widely applicable to accreting black hole systems.

Notes: The effect of force on the thermodynamics and kinetics of reactions is described. The key parameters are the difference in end-to-end distance between reactant and product for thermodynamics, and the distance to the transition state for kinetics. I focus the review on experimental results on force unfolding of RNA. Methods to measure Gibbs free energies and kinetics for reversible and irreversible reactions are described. The use of the worm-like-chain model to calculate the effects of force on thermodynamics and kinetics is illustrated with simple models. The main purpose of the review is to describe the simple experiments that have been done so far, and to encourage more people to enter a field that is new and full of opportunities.

Notes: The structural elucidation of clear but distant homologs of actin and tubulin in bacteria and GFP labeling of these proteins promises to reinvigorate the field of prokaryotic cell biology. FtsZ (the tubulin homolog) and MreB/ParM (the actin homologs) are indispensable for cellular tasks that require the cell to accurately position molecules, similar to the function of the eukaryotic cytoskeleton. FtsZ is the organizing molecule of bacterial cell division and forms a filamentous ring around the middle of the cell. Many molecules, including MinCDE, SulA, ZipA, and FtsA, assist with this process directly. Recently, genes much more similar to tubulin than to FtsZ have been identified in Verrucomicrobia. MreB forms helices underneath the inner membrane and probably defines the shape of the cell by positioning transmembrane and periplasmic cell wall-synthesizing enzymes. Currently, no interacting proteins are known for MreB and its relatives that help these proteins polymerize or depolymerize at certain times and places inside the cell. It is anticipated that MreB-interacting proteins exist in analogy to the large number of actin binding proteins in eukaryotes. ParM (a plasmid-borne actin homolog) is directly involved in pushing certain single-copy plasmids to the opposite poles by ParR/parC-assisted polymerization into double-helical filaments, much like the filaments formed by actin, F-actin. Mollicutes seem to have developed special systems for cell shape determination and motility, such as the fibril protein in Spiroplasma.

Notes: Molecular motions are widely regarded as contributing factors in many aspects of protein function. The enzyme dihydrofolate reductase (DHFR), and particularly that from Escherichia coli, has become an important system for investigating the linkage between protein dynamics and catalytic function, both because of the location and timescales of the motions observed and because of the availability of a large amount of structural and mechanistic data that provides a detailed context within which the motions can be interpreted. Changes in protein dynamics in response to ligand binding, conformational change, and mutagenesis have been probed using numerous experimental and theoretical approaches, including X-ray crystallography, fluorescence, nuclear magnetic resonance (NMR), molecular dynamics simulations, and hybrid quantum/classical dynamics methods. These studies provide a detailed map of changes in conformation and dynamics throughout the catalytic cycle of DHFR and give new insights into the role of protein motions in the catalytic activity of this enzyme.

Notes: The genomics revolution has provided a deluge of new targets for drug discovery. To facilitate the drug discovery process, many researchers are turning to fragment-based approaches to find lead molecules more efficiently. One such method, Tethering1, allows for the identification of small-molecule fragments that bind to specific regions of a protein target. These fragments can then be elaborated, combined with other molecules, or combined with one another to provide high-affinity drug leads. In this review we describe the background and theory behind Tethering and discuss its use in identifying novel inhibitors for protein targets including interleukin-2 (IL-2), thymidylate synthase (TS), protein tyrosine phosphatase 1B (PTP-1B), and caspases.

Notes: Recent work is extending the methodology of X-ray crystallography to the structure determination of noncrystalline specimens. The phase problem is solved using the oversampling method, which takes advantage of "continuous" diffraction patterns from noncrystalline specimens. Here we review the principle of this newly developed technique and discuss the ongoing experiments of imaging nonperiodic objects, such as cells and cellular structures, using coherent and bright X rays produced by third-generation synchrotron sources. In the longer run, the technique may be applicable to image single biomolecules using anticipated X-ray free electron lasers. Here, computer simulations have so far demonstrated two important steps: (a) by using an extremely intense femtosecond X-ray pulse, a diffraction pattern can be recorded from a macromolecule before radiation damage manifests itself; and (b) the phase information can be retrieved in an ab initio fashion from a set of calculated noisy diffraction patterns of single protein molecules.

Notes: Topoisomerases are enzymes that use DNA strand scission, manipulation, and rejoining activities to directly modulate DNA topology. These actions provide a powerful means to effect changes in DNA supercoiling levels, and allow some topoisomerases to both unknot and decatenate chromosomes. Since their initial discovery over three decades ago, researchers have amassed a rich store of information on the cellular roles and regulation of topoisomerases, and have delineated general models for their chemical and physical mechanisms. Topoisomerases are now known to be necessary for the survival of cellular organisms and many viruses and are rich clinical targets for anticancer and antimicrobial treatments. In recent years, crystal structures have been obtained for each of the four types of topoisomerases in a number of distinct conformational and substrate-bound states. In addition, sophisticated biophysical methods have been utilized to study details of topoisomerase reaction dynamics and enzymology. A synthesis of these approaches has provided researchers with new physical insights into how topoisomerases employ chemistry and allostery to direct the large-scale molecular motions needed to pass DNA strands through each other.

Notes: Emerging methods in cryo-electron microscopy allow determination of the three-dimensional architectures of objects ranging in size from small proteins to large eukaryotic cells, spanning a size range of more than 12 orders of magnitude. Advances in determining structures by "single particle" microscopy and by "electron tomography" provide exciting opportunities to describe the structures of subcellular assemblies that are either too large or too heterogeneous to be investigated by conventional crystallographic methods. Here, we review selected aspects of progress in structure determination by cryo-electron microscopy at molecular resolution, with a particular emphasis on topics at the interface of single particle and tomographic approaches. The rapid pace of development in this field suggests that comprehensive descriptions of the structures of whole cells and organelles in terms of the spatial arrangements of their molecular components may soon become routine.

Notes: F1-ATPase is a rotary motor made of a single protein molecule. Its rotation is driven by free energy obtained by ATP hydrolysis. In vivo, another motor, Fo, presumably rotates the F1 motor in the reverse direction, reversing also the chemical reaction in F1 to let it synthesize ATP. Here we attempt to answer two related questions, How is free energy obtained by ATP hydrolysis converted to the mechanical work of rotation, and how is mechanical work done on F1 converted to free energy to produce ATP? After summarizing single-molecule observations of F1 rotation, we introduce a toy model and discuss its free-energy diagrams to possibly answer the above questions. We also discuss the efficiency of molecular motors in general.

Notes: Mass spectrometry provides key tools for the analysis of proteins. New types of mass spectrometers that provide enhanced capability to discover protein identities and perform improved proteomic experiments are discussed. Handling the complex mixtures of peptides and proteins generated from protein complexes and whole cells requires multidimensional separations; several forms of separation are discussed. Applications of mass spectrometry-based approaches for contemporary proteomic analyses are described.

Notes: Nucleic acids are characterized by a vast structural variability. Secondary structural conformations include the main polymorphs A, B, and Z, cruciforms, intrinsic curvature, and multistranded motifs. DNA secondary motifs are stabilized and regulated by the primary base sequence, contextual effects, environmental factors, as well as by high-order DNA packaging modes. The high-order modes are, in turn, affected by secondary structures and by the environment. This review is concerned with the flow of structural information among the hierarchical structural levels of DNA molecules, the intricate interplay between the various factors that affect these levels, and the regulation and physiological significance of DNA high-order structures.

Notes: Meteorites and interplanetary dust particles contain presolar stardust grains: solid samples of stars that can be studied in the laboratory. The stellar origin of the grains is indicated by enormous isotopic ratio variations compared with Solar System materials, explainable only by nuclear reactions occurring in stars. Known presolar phases include diamond, SiC, graphite, Si3N4, Al2O3, MgAl2O4, CaAl12O19, TiO2, Mg(Cr,Al)2O4, and most recently, silicates. Subgrains of refractory carbides (e.g., TiC), and Fe-Ni metal have also been observed within individual presolar graphite grains. We review the astrophysical implications of these grains for the sciences of nucleosynthesis, stellar evolution, grain condensation, and the chemical and dynamic evolution of the Galaxy. Unique scientific information derives primarily from the high precision (in some cases 〈1%) of the measured isotopic ratios of large numbers of elements in single stardust grains. Stardust science is just now reaching maturity and will play an increasingly important role in nucleosynthesis applications.

Notes: This chapter reviews the properties of faint IR-selected field galaxies and the extremely red color-selected populations in particular. These populations are a mix of passively evolving stellar systems and heavily obscured star-forming galaxies. The star-forming component appears to constitute 20-50% of the population depending on the magnitude and color cuts employed. The remaining objects are a mix of passively evolving ellipticals and early-type disk galaxies. The passively evolving red galaxies are strongly clustered in space and are likely the high-mass high-luminosity end of the elliptical galaxy progenitor population at redshifts between one and two. These galaxies have masses and space densities that appear to be in conflict with late-forming hierarchical galaxy-formation models. The red galaxies appear to be a population that is distinct from the moderately star-forming Lyman-Break galaxies but may be related to the starburst population at z 〉 2 seen in deep submillimeter surveys.

Notes: This paper reviews the current state of the art in accidental explosion modeling using methods based on computational fluid dynamics (CFD) in the petrochemical process industries. We discuss the problem in terms of its industrial importance and its technical difficulty, which stems mainly from the large range of length and timescales that must be represented. Explicit representation of all scales is not feasible due to limitations of computational cost, and modeling of unresolved physical features is required. We also discuss geometry modeling using the porosity/distributed resistance (PDR) method and review relevant combustion modeling. We describe an advanced CFD approach using unstructured adaptive gridding and discuss its usefulness in the context of results obtained for both two dimensional and three dimensional simulations of gas explosion phenomena in complex geometries.

Notes: Early concepts in shock wave drag reduction enabled modern aeronautical systems, and continuing research progress in this arena is crucial for significant improvements in long haul transports and various military platforms and weapons. The research area is rich in concepts/approaches, but many of these have not progressed into the realm of application. This is due in part to a lack of knowledge on the part of the fluids research community concerning the multidisciplinary "real-world" design space/metrics and a consequent lack of the requisite breadth and depth of research information required to evaluate/apply the concept. The article reviews the extant wave drag reduction approaches that are (a) well understood/applied, (b) under active study/indicate considerable promise, and (c) those in the nascent stage only.

Notes: Almost all vessels carrying fluids within the body are flexible, and interactions between an internal flow and wall deformation often underlie a vessel's biological function or dysfunction. Such interactions can involve a rich range of fluid-mechanical phenomena, including nonlinear pressure-drop/flow-rate relations, self-excited oscillations of single-phase flow at high Reynolds number and capillary-elastic instabilities of two-phase flow at low Reynolds number. We review recent advances in understanding the fundamental mechanics of flexible-tube flows, and discuss physiological applications spanning the cardiovascular system (involving wave propagation and flow-induced instabilities of blood vessels), the respiratory system (involving phonation, the closure and reopening of liquid-lined airways, and Marangoni flows on flexible surfaces), and elsewhere in the body (involving active peristaltic transport driven by fluid-structure/muscle interactions).

Notes: We review the use of ray models for internal waves, particularly formulations for calculating wave amplitudes along the ray. These are expressed in spatial, wave number, and phase-space coordinates. The choice of formulation affects not only the difficulty of the calculations for rays and caustics but also the degree to which the waves satisfy slowly varying assumptions. We describe several examples taken from atmospheric and oceanic applications that illustrate the variety of options for ray models.

Notes: The characterization of blood flow is important for understanding the function of the cardiovascular system under normal and diseased conditions, designing cardiovascular devices, and diagnosing and treating congenital and acquired cardiovascular disease. Experimental methods, especially magnetic resonance imaging techniques can be used to noninvasively quantify blood flow for diagnosing cardiovascular disease, researching disease mechanisms, and validating assumptions and predictions of mathematical models. Computational methods can be used to simulate blood flow and vessel dynamics, test hypotheses of disease formation under controlled conditions, and evaluate devices that have not yet been built and treatments that have not yet been implemented. In this article we review experimental and computational methods for quantifying blood flow velocity and pressure fields in human arteries. We place particular emphasis on providing an introduction to the physics and applications of magnetic resonance imaging, and surveying lumped parameter, one-dimensional, and three-dimensional numerical methods used to model blood flow.

Notes: We review the experimental evidence on turbulent flows over rough walls. Two parameters are important: the roughness Reynolds number ks+ , which measures the effect of the roughness on the buffer layer, and the ratio of the boundary layer thickness to the roughness height, which determines whether a logarithmic layer survives. The behavior of transitionally rough surfaces with low ks+ depends a lot on their geometry. Riblets and other drag-reducing cases belong to this regime. In flows with delta/k 〈 50, the effect of the roughness extends across the boundary layer, and is also variable. There is little left of the original wall-flow dynamics in these flows, which can perhaps be better described as flows over obstacles. We also review the evidence for the phenomenon of d-roughness. The theoretical arguments are sound, but the experimental evidence is inconclusive. Finally, we discuss some ideas on how rough walls can be modeled without the detailed computation of the flow around the roughness elements themselves.

Notes: We review artificial boundary conditions (BCs) for simulation of inflow, outflow, and far-field (radiation) problems, with an emphasis on techniques suitable for compressible turbulent shear flows. BCs based on linearization near the boundary are usually appropriate for inflow and radiation problems. A variety of accurate techniques have been developed for this case, but some robustness and implementation issues remain. At an outflow boundary, the linearized BCs are usually not accurate enough. Various ad hoc models have been proposed for the nonlinear case, including absorbing layers and fringe methods. We discuss these techniques and suggest directions for future modeling efforts.

Notes: DNA secondary structure plays an important role in biology, genotyping diagnostics, a variety of molecular biology techniques, in vitro-selected DNA catalysts, nanotechnology, and DNA-based computing. Accurate prediction of DNA secondary structure and hybridization using dynamic programming algorithms requires a database of thermodynamic parameters for several motifs including Watson-Crick base pairs, internal mismatches, terminal mismatches, terminal dangling ends, hairpins, bulges, internal loops, and multibranched loops. To make the database useful for predictions under a variety of salt conditions, empirical equations for monovalent and magnesium dependence of thermodynamics have been developed. Bimolecular hybridization is often inhibited by competing unimolecular folding of a target or probe DNA. Powerful numerical methods have been developed to solve multistate-coupled equilibria in bimolecular and higher-order complexes. This review presents the current parameter set available for making accurate DNA structure predictions and also points to future directions for improvement.

Notes: Phosphoserine/threonine-binding domains integrate intracellular signal transduction events by forming multiprotein complexes with substrates of protein serine/threonine kinases. These phosphorylation-dependent molecular recognition events are responsible for coordinating the precise temporal and spatial response of cells to a wide range of stimuli, particularly those involved in cell cycle control and the response to DNA damage. The known families of phosphoserine/threonine-binding modules include 14-3-3 proteins, WW domains, FHA domains, WD40 repeats, and the Polo-box domains of Polo-like kinases. Peptide-library experiments reveal the optimal sequence motifs recognized by these domains, and facilitate high-resolution structural studies elucidating the mechanisms of phospho-dependent binding and the molecular basis for domain function within intricate signaling networks. Information emerging from these studies is critical for the design of novel experimental and therapeutic tools aimed at altering signal transduction cascades in normal and diseased cells.

Notes: Planets form in the circumstellar disks of young stars. We review the basic physical processes by which solid bodies accrete each other and alter each others' random velocities, and we provide order-of-magnitude derivations for the rates of these processes. We discuss and exercise the two-groups approximation, a simple yet powerful technique for solving the evolution equations for protoplanet growth. We describe orderly, runaway, neutral, and oligarchic growth. We also delineate the conditions under which each occurs. We refute a popular misconception by showing that the outer planets formed quickly by accreting small bodies. Then we address the final stages of planet formation. Oligarchy ends when the surface density of the oligarchs becomes comparable to that of the small bodies. Dynamical friction is no longer able to balance viscous stirring and the oligarchs' random velocities increase. In the inner-planet system, oligarchs collide and coalesce. In the outer-planet system, some of the oligarchs are ejected. In both the inner- and outer-planet systems, this stage ends once the number of big bodies has been reduced to the point that their mutual interactions no longer produce large-scale chaos. Subsequently, dynamical friction by the residual small bodies circularizes and flattens their orbits. The final stage of planet formation involves the clean up of the residual small bodies. Clean up has been poorly explored.

Notes: The Universe is in transition. At early times, galactic evolution was dominated by hierarchical clustering and merging, processes that are violent and rapid. In the far future, evolution will mostly be secular-the slow rearrangement of energy and mass that results from interactions involving collective phenomena such as bars, oval disks, spiral structure, and triaxial dark halos. Both processes are important now. This review discusses internal secular evolution, concentrating on one important consequence, the buildup of dense central components in disk galaxies that look like classical, merger-built bulges but that were made slowly out of disk gas. We call these pseudobulges. We begin with an "existence proof"-a review of how bars rearrange disk gas into outer rings, inner rings, and stuff dumped onto the center. The results of numerical simulations correspond closely to the morphology of barred galaxies. In the simulations, gas is transported to small radii, where it reaches high densities and plausibly feeds star formation. In the observations, many barred and oval galaxies have dense central concentrations of gas and star formation. Optical colors and spectra often imply young stellar populations. So the formation of pseudobulges is well supported by theory and observations. It is embedded in a broader evolution picture that accounts for much of the richness observed in galaxy structure. If secular processes built dense central components that masquerade as bulges, how can we distinguish them from merger-built bulges? Observations show that pseudobulges retain a memory of their disky origin. That is, they have one or more characteristics of disks: (a) flatter shapes than those of classical bulges, (b) correspondingly large ratios of ordered to random velocities, (c) small velocity dispersions sigma with respect to the Faber-Jackson correlation between sigma and bulge lumi nosity, (d) spiral structure or nuclear bars in the "bulge" part of the light profile, (e) nearly exponential brightness profiles, and ( f ) starbursts. All these structures occur preferentially in barred and oval galaxies, where secular evolution should be most rapid. So the cleanest examples of pseudobulges are recognizable. Are their formation timescales plausible? We use measurements of central gas densities and star-formation rates to show that pseudobulges of the observed densities form on timescales of a few billion years. Thus a large variety of observational and theoretical results lead to a new picture of galaxy evolution that complements hierarchical clustering and merging. Secular evolution consists of more than the aging of stellar populations. Every galaxy is dynamically evolving.

Notes: Interstellar turbulence has implications for the dispersal and mixing of the elements, cloud chemistry, cosmic ray scattering, and radio wave propagation through the ionized medium. This review discusses the observations and theory of these effects. Metallicity fluctuations are summarized, and the theory of turbulent transport of passive tracers is reviewed. Modeling methods, turbulent concentration of dust grains, and the turbulent washout of radial abundance gradients are discussed. Interstellar chemistry is affected by turbulent transport of various species between environments with different physical properties and by turbulent heating in shocks, vortical dissipation regions, and local regions of enhanced ambipolar diffusion. Cosmic rays are scattered and accelerated in turbulent magnetic waves and shocks, and they generate turbulence on the scale of their gyroradii. Radio wave scintillation is an important diagnostic for small-scale turbulence in the ionized medium, giving information about the power spectrum and amplitude of fluctuations. The theory of diffraction and refraction as well as the main observations and scintillation regions are reviewed.

Notes: Impulsive reconnection dynamics is characterized not only by fast growth but also by a sudden change in the time derivative of the growth rate. I review recent developments in the theory and simulation of forced impulsive reconnection based on the equations of resistive and Hall magnetohydrodynamics (MHD). Impulsive reconnection can be realized in resistive as well as Hall MHD by the imposition of suitable boundary conditions. However, compared with resistive MHD, Hall MHD reconnection is distinguished by qualitatively different magnetic field and electron and ion signatures in the reconnection layer. Furthermore, nonlinear reconnection rates in Hall MHD are weakly dependent on the Lundquist number. I discuss applications of the physics of impulsive reconnection to substorms in the Earth's magnetotail and solar flares.

Notes: Is it by design or by default that water molecules are observed at the interfaces of some protein-DNA complexes? Both experimental and theoretical studies on the thermodynamics of protein-DNA binding overwhelmingly support the extended hydrophobic view that water release from interfaces favors binding. Structural and energy analyses indicate that the waters that remain at the interfaces of protein-DNA complexes ensure liquid-state packing densities, screen the electrostatic repulsions between like charges (which seems to be by design), and in a few cases act as linkers between complementary charges on the biomolecules (which may well be by default). This review presents a survey of the current literature on water in protein-DNA complexes and a critique of various interpretations of the data in the context of the role of water in protein-DNA binding and principles of protein-DNA recognition in general.

Notes: Two current frontiers in EPR research are high-field ( nu0 〉 70 GHz, B0 〉 2.5 T ) electron paramagnetic resonance (EPR) and high-field electron-nuclear double resonance (ENDOR). This review focuses on recent advances in high-field ENDOR and its applications to the study of proteins containing native paramagnetic sites. It concentrates on two aspects; the first concerns the determination of the location of protons and is related to the site geometry, and the second focuses on the spin density distribution within the site, which is inherent to the electronic structure. Both spin density and proton locations can be derived from ligand hyperfine couplings determined by ENDOR measurements. A brief description of the experimental methods is presented along with a discussion of the advantages and disadvantages of high-field ENDOR compared with conventional X-band (~ 9.5 GHz) experiments. Specific examples of both protein single crystals and frozen solutions are then presented. These include the determination of the coordinates of water ligand protons in the Mn(II) site of concanavalin A, the detection of hydrogen bonds in a quinone radical in the bacterial photosynthetic reaction center as well as in the tyrosyl radical in ribonuclease reductase, and the study of the spin distribution in copper proteins. The copper proteins discussed are the type I copper of azurin and the binuclear CuA center in a number of proteins. The last part of the review presents a brief discussion of the interpretation of hyperfine couplings using quantum chemical calculations, primarily density functional theory (DFT) methods. Such methods are becoming an integral part of the data analysis tools, as they can facilitate signal assignment and provide the ultimate relation between the experimental hyperfine couplings and the electronic wave function.

Notes: Most reactions on DNA are carried out by multimeric protein complexes that interact with two or more sites in the DNA and thus loop out the DNA between the sites. The enzymes that catalyze these reactions usually have no activity until they interact with both sites. This review examines the mechanisms for the assembly of protein complexes spanning two DNA sites and the resultant triggering of enzyme activity. There are two main routes for bringing together distant DNA sites in an enzyme complex: either the proteins bind concurrently to both sites and capture the intervening DNA in a loop, or they translocate the DNA between one site and another into an expanding loop, by an energy-dependent translocation mechanism. Both capture and translocation mechanisms are discussed here, with reference to the various types of restriction endonuclease that interact with two recognition sites before cleaving DNA.

Notes: Medical genetics so far has identified ~16,000 missense mutations leading to single amino acid changes in protein sequences that are linked to human disease. A majority of these mutations affect folding or trafficking, rather than specifically affecting protein function. Many disease-linked mutations occur in integral membrane proteins, a class of proteins about whose folding we know very little. We examine the phenomenon of disease-linked misassembly of membrane proteins and describe model systems currently being used to study the delicate balance between proper folding and misassembly. We review a mechanism by which cells recognize membrane proteins with a high potential to misfold before they actually do, and which targets these culprits for degradation. Serious disease phenotypes can result from loss of protein function and from misfolded proteins that the cells cannot degrade, leading to accumulation of toxic aggregates. Misassembly may be averted by small-molecule drugs that bind and stabilize the native state. Where there is danger there should be prudent haste. Quick! Pilgrim, be quick and tarry not in the place of danger. -Charles Spurgeon, sermon at Newington, 1889

Notes: The phenomenon of allostery is conventionally described for small symmetrical oligomeric proteins such as hemoglobin. Here we review experimental evidence from a variety of systems-including bacterial chemotaxis receptors, muscle ryanodine receptors, and actin filaments-showing that conformational changes can also propagate through extended lattices of protein molecules. We explore the statistical mechanics of idealized linear and two-dimensional arrays of allosteric proteins and show that, as in the analogous Ising models, arrays of closely packed units can show large-scale integrated behavior. We also discuss proteins that undergo conformational changes driven by the hydrolysis of ATP and give examples in which these changes propagate through linear chains of molecules. We suggest that conformational spread could provide the basis of a solid-state "circuitry" in a living cell, able to integrate biochemical and biophysical events over hundreds of protein molecules.

Notes: Systems biology research is currently dominated by integrative, multidisciplinary approaches. Although important, these strategies lack an overarching systems perspective such as those used in engineering. We describe here the Axiomatic Design approach to system analysis and illustrate its utility in the study of biological systems. Axiomatic Design relates functions at all levels to the behavior of biological molecules and uses a Design Matrix to understand these relationships. Such an analysis reveals that robustness in many biological systems is achieved through the maintenance of functional independence of numerous subsystems. When the interlinking (coupling) of systems is required, biological systems impose a functional period in order to maximize successful operation of the system. Ultimately, the application of Axiomatic Design methods to the study of biological systems will aid in handling cross-scale models, identifying control points, and predicting system-wide effects of pharmacological agents.

Notes: Observations of interstellar gas-phase and solid-state species in the 2.4-200 mum range obtained with the spectrometers on board the Infrared Space Observatory (ISO) are reviewed. Lines and bands caused by ices, polycyclic aromatic hydrocarbons, silicates, and gas-phase atoms and molecules (in particular H2, CO, H2O, OH, and CO2) are summarized and their diagnostic capabilities illustrated. The results are discussed in the context of the physical and chemical evolution of star-forming regions, including photon-dominated regions, shocks, protostellar envelopes, and disks around young stars.

Notes: I was born in 1914 in Amsterdam. I grew up there, filling my teenage years with activities as an amateur astronomer. I later studied at Leiden University and volunteered at Leiden Observatory. From 1938 to 1945, I was assistant at the Kapteyn Institute in Groningen, including during the war years 1940-1945, returning to Leiden in October 1945. After prolonged stays at Yerkes Observatory in 1947-1948 and 1952, and participation in Leiden's astrometric Kenya expedition in 1949-1950, I became associate professor at Yerkes Observatory in the fall of 1953. In 1957, I returned to the Kapteyn Institute and soon became involved in the creation of ESO, of which I became scientific director in 1968 and director general from 1970 to 1974. In 1975, I joined Leiden Observatory again, staying until my retirement in 1981, and since then I have enjoyed the hospitality of the Kapteyn Institute. I was president of the IAU from 1976 to 1979. From 1982 to 1989, I was chairman of the Scientific Programs Selection Committee for the European Space Agency's satellite, Hipparcos. My principal research interests have been in galactic structure and star formation, with emphasis on stellar associations. In addition to my astronomical interests, I have researched and published on Dutch village history.

Notes: Abundance variations within globular clusters (GCs), and of GC stars with respect to field stars, are important diagnostics of a variety of physical phenomena, related to the evolution of individual stars, mass transfer in binary systems, and chemical evolution in high density environments. The broad astrophysical implications of GCs as building blocks of our knowledge of the Universe make a full understanding of their history and evolution basic in a variety of astrophysical fields. We review the current status of the research in this field, comparing the abundances in GCs with those obtained for field stars, discussing in depth the evidence for H-burning at high temperatures in GC stars, describing the process of self-enrichment in GCs with particular reference to the case of the most massive Galactic GC (omega Cen), and discussing various classes of cluster stars with abundance anomalies. Whereas the overall pattern might appear very complex at first sight, exciting new scenarios are opening where the interplay between GC dynamical and chemical properties are closely linked with each other.

Notes: Important physical processes on the Sun, and especially in sunspots, occur on spatial scales at or below the limiting resolution of current solar telescopes. Over the past decade, using a number of new techniques, high-resolution observations have begun to reveal the complex thermal and magnetic structure of a sunspot, along with associated flows and oscillations. During this time remarkable advances in computing power have allowed significant progress in our theoretical understanding of the dynamical processes, such as magnetoconvection, taking place within a sunspot. In this review we summarize the latest observational results and theoretical interpretations of the fine structure in sunspots. A number of projects underway to build new solar telescopes or upgrade existing ones, along with several promising new theoretical ideas, ensure that there will be significant advances in sunspot research over the coming decade.

Notes: The giant impact theory is the leading hypothesis for the origin of the Moon. This review focuses on dynamical aspects of an impact-induced lunar formation, in particular those areas that have advanced considerably in the past decade, including (a) late-stage terrestrial accretion, (b) giant impact simulations, (c) protolunar disk evolution and lunar accretion, and (d) the origin of the initial lunar inclination. In all, recent developments now provide a reasonably consistent dynamical account of the origin of the Moon through a late giant impact with Earth, and suggest that the impact-generation of satellites is likely to be a common process in late-stage solid planet formation.

Notes: After early work by Newton, the eighteenth and early nineteenth century French mathematicians Laplace, Lagrange, Poisson, and Cauchy made real theoretical advances in the linear theory of water waves; in Germany, Gerstner considered nonlinear waves, and the brothers Weber performed fine experiments. Later in Britain during 1837-1847, Russell, Green, Kelland, Airy, and Earnshaw all made substantial contributions, setting the scene for subsequent work by Stokes and others.

Notes: Coating is the process of applying thin liquid layers to a substrate, often a moving web. Complex coating processes can be approached through examination of their fluid mechanical components. The flow elements reviewed in this article include the boundary layer along a moving wall, the dynamic wetting line, withdrawal from a pool, flow metered by a narrow channel, die flow, flow on an incline, the freely falling liquid curtain, premetered coating with a small gap, and flow after coating. Although some flow elements are well studied and understood, others require additional investigation. Genuinely predictive modeling of complex coating processes is not yet possible and coating practice remains largely empirical. Nonetheless, coating science is sufficiently advanced that physical insights and mathematical models greatly benefit design and practice.

Notes: Since Leibovich's comprehensive review of Langmuir circulation in 1983 there have been substantial advances in modeling (notably the construction of Large Eddy Simulation models) and in observations using novel techniques that together have led to a radical change in understanding the phenomena. It is now regarded as one of the several turbulent processes driven by wind and waves in the upper layers of large bodies of water, influential in producing and maintaining the uniform surface mixed layer and in driving dispersion.

Notes: Online, continuous, two-phase flow measurement is often necessary, particularly in the oil and gas industry. In this article, we describe some of the commercially most important techniques for gas-liquid, gas-solid, liquid-solid, and liquid-liquid flows, and provide associated illustrative sketches and regime maps. These techniques involve Venturi pressure drop, Coriolis, electromagnetic, and cross-correlation flow meters, gamma-ray absorption and gradio-manometer densitometers, and local electrical and fiber-optic sensors, for which we describe the principles of operation and interpretation. References are given to more comprehensive texts and papers; these are representative rather than exhaustive. It is emphasized that empirical calibration is the norm and that detailed fluid-mechanical analysis has so far played little part in instrument design and operation.

Notes: This paper is a short and nonexhaustive survey of some recent developments in optimal shape design (OSD) for fluids. OSD is an interesting field both mathematically and for industrial applications. Existence, sensitivity, and compatibility of discretizations are important theoretical issues. Efficient algorithmic implementations with low complexity are also critical. In this paper we discuss topological optimization, algorithmic differentiation, gradient smoothers, Computer Aided Design (CAD)-free platforms and shock differentiation; all these are applied to a multicriterion optimization for a supersonic business jet.

Notes: The coexistence in the deep ocean of a finite, stable stratification, a strong meridional overturning circulation, and mesoscale eddies raises complex questions concerning the circulation energetics. In particular, small-scale mixing processes are necessary to resupply the potential energy removed in the interior by the overturning and eddy-generating process. A number of lines of evidence, none complete, suggest that the oceanic general circulation, far from being a heat engine, is almost wholly governed by the forcing of the wind field and secondarily by deep water tides. In detail however, the budget of mechanical energy input into the ocean is poorly constrained. The now inescapable conclusion that over most of the ocean significant "vertical" mixing is confined to topographically complex boundary areas implies a potentially radically different interior circulation than is possible with uniform mixing. Whether ocean circulation models, either simple box or full numerical ones, neither explicitly accounting for the energy input into the system nor providing for spatial variability in the mixing, have any physical relevance under changed climate conditions is at issue.

Notes: Microfluidic devices for manipulating fluids are widespread and finding uses in many scientific and industrial contexts. Their design often requires unusual geometries and the interplay of multiple physical effects such as pressure gradients, electrokinetics, and capillarity. These circumstances lead to interesting variants of well-studied fluid dynamical problems and some new fluid responses. We provide an overview of flows in microdevices with focus on electrokinetics, mixing and dispersion, and multiphase flows. We highlight topics important for the description of the fluid dynamics: driving forces, geometry, and the chemical characteristics of surfaces.

Notes: Shock wave research was traditionally developed as an element of high-speed gas dynamics supporting supersonic flights and atmospheric reentry of space vehicles. However, recently its scope has expanded to the comprehensive interpretation of shock wave phenomena in nature and the artificial world. In particular, many aspects of volcanoes's explosive eruptions are closely related to shock wave dynamics. One hypothesis proposes that during asteroid impact events that took place millions of years ago underwater shock waves played a decisive role in mass extinction of marine creatures. Shock waves have been successfully applied to medical therapy. Extracorporeal shock wave lithotripsy (ESWL) was a wonderful success in noninvasive removal of urinary tract stones. Recently, shock wave therapy was further developed for the revascularization of cerebral embolism, drug delivery, and other interesting therapeutic methods. This review provides an overview of the state-of-the-art interdisciplinary applications of shock wave research to geophysics and medicine.

Notes: This review summarizes fundamental results and discoveries concerning vortex-induced vibration (VIV), that have been made over the last two decades, many of which are related to the push to explore very low mass and damping, and to new computational and experimental techniques that were hitherto not available. We bring together new concepts and phenomena generic to VIV systems, and pay special attention to the vortex dynamics and energy transfer that give rise to modes of vibration, the importance of mass and damping, the concept of a critical mass, the relationship between force and vorticity, and the concept of "effective elasticity," among other points. We present new vortex wake modes, generally in the framework of a map of vortex modes compiled from forced vibration studies, some of which cause free vibration. Some discussion focuses on topics of current debate, such as the decomposition of force, the relevance of the paradigm flow of an elastically mounted cylinder to more complex systems, and the relationship between forced and free vibration.

Notes: The nation has over 40,000 metric tonnes (MT) of nuclear waste destined for disposal in a geologic repository at Yucca Mountain. In this review, we highlight some of the important geoscience issues associated with the project and place them in the context of the process by which a final decision on Yucca Mountain will be made. The issues include understanding how water could infiltrate the repository, corrode the canisters, dissolve the waste, and transport it to the biosphere during a 10,000-year compliance period in a region, the Basin and Range province, that is known for seismic and volcanic activity. Although the site is considered to be "dry," a considerable amount of water is present as pore waters and as structural water in zeolites. The geochemical environment is oxidizing, and the present repository design will maintain temperatures at greater than 100oC for thousands of years. Geoscientists in this project are challenged to make unprecedented predictions about coupled thermal, hydrologic, mechanical, and geochemical processes governing the future behavior of the repository and to conduct research in a regulatory and legal environment that requires a quantitative analysis of repository performance.

Notes: The migration of the Mendocino triple junction through central and northern California over the past 25-30 million years has led to a profound change in plate interactions along coastal California. The tectonic consequences of the abrupt change from subduction plate interactions north of the triple junction to the development of the San Andreas transform system south of the triple junction can be seen in the geologic record and geophysical observations. The primary driver of this tectonism is a coupling among the subducting Juan de Fuca (Gorda), North American, and Pacific plates that migrates with the triple junction. This coupling leads to ephemeral thickening of the overlying North American crust, associated uplift and subsequent subsidence, and a distinctive sequence of fault development and volcanism.

Notes: Bedrock rivers set much of the relief structure of active orogens and dictate rates and patterns of denudation. Quantitative understanding of the role of climate-driven denudation in the evolution of unglaciated orogens depends first and foremost on knowledge of fluvial erosion processes and the factors that control incision rate. The results of intense research in the past decade are reviewed here, with the aim of highlighting remaining unknowns and suggesting fruitful avenues for further research. This review considers in turn (a) the occurrence and morphology of bedrock channels and their relation to tectonic setting; (b) the physical processes of fluvial incision into rock; and (c) models of river incision, their implications, and the field and laboratory data needed to test, refine, and extend them.

Notes: Computer models are used to mimic the early evolution of ancient vascular plants (tracheophytes). These models have three components: (a) an N-dimensional domain of all mathematically conceivable ancient morphologies (a morphospace); (b) a numerical assessment of the ability (fitness) of each morphology to intercept light, maintain mechanical stability, conserve water, and produce and disperse spores; and (c) an algorithm that searches the morphospace for successively more fit variants (an adaptive walk). Beginning with the most ancient known plant form, evolution is simulated by locating neighboring morphologies that progressively perform one or more tasks more efficiently. The resulting simulated adaptive walks indicate that early tracheophyte evolution involved optimizing the performance of many tasks simultaneously rather than maximizing the performance of one or only a few tasks individually, and that the requirement for optimization accelerated the tempo of morphological evolution in the Silurian and Devonian.

Notes: Models of processes in the alpine snow cover fundamentally depend on the spatial distribution of the surface energy balance over areas where topographic variability causes huge differences in the incoming solar radiation and in snow depth because of redistribution by wind. At a spatial scale commensurate with that of the terrain, we want to know which areas are covered by snow, and we want to estimate the snow's spectral albedo, along with other properties such as grain size, contaminants, temperature, liquid water content, and depth or water equivalent. From multispectral and hyperspectral remote sensing at wavelengths from 0.4-15 mum, the retrievable properties include snow-covered area, albedo, grain size, liquid water very near the surface, and temperature. Spectral mixture analysis allows the retrieval of the subpixel variability of snow-covered area, along with the snow's albedo. Remaining research challenges include the remote sensing of absorbing impurities; accounting for variability in the bidirectional-reflectance distribution function and the variability of grain size with depth; retrieving snow cover in forested regions; reconciling field measurements of emissivity with snow properties; and adapting the algorithms to frequent, large-scale processing.

Notes: We examine the genetics of marine diversification along the West Coast of North America in relation to the Late Neogene geology and climate of the region. Trophically important components of the diverse West Coast fauna, including kelp, alcid birds (e.g., auks, puffins), salmon, rockfish, abalone, and Cancer crabs, appear to have radiated during peaks of upwelling primarily in the Late Miocene and in some cases secondarily in the Pleistocene. Phylogeographic barriers associated with Mio-Pliocene estuaries of the mid-California coast, the Pliocene opening of the Gulf of California, tectonic and eustatic evolution of the California Bight, as well as the influence of Pleistocene and Holocene climate change on genetic structure are assessed in a geologic context. Comparisons to East Coast and western freshwater systems, as well as upwelling systems around the globe, provide perspective for the survey.