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  • Articles  (14)
  • biodegradation  (14)
  • Springer  (14)
  • Blackwell Publishing Ltd
  • Institute of Physics
  • International Union of Crystallography
  • Oxford University Press
  • Taylor & Francis
  • 2020-2022
  • 2010-2014
  • 1995-1999  (14)
  • 1997  (14)
  • Energy, Environment Protection, Nuclear Power Engineering  (14)
  • Economics
  • Natural Sciences in General
  • Geosciences
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  • Articles  (14)
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  • Springer  (14)
  • Blackwell Publishing Ltd
  • Institute of Physics
  • International Union of Crystallography
  • Oxford University Press
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Years
  • 2020-2022
  • 2010-2014
  • 1995-1999  (14)
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  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Biodegradation 8 (1997), S. 15-19 
    ISSN: 1572-9729
    Keywords: biodegradation ; crude oil ; hexadecane ; phenanthrene ; sorbent
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Urea-formaldehyde polymer is currently used as asorbent for containment and clean up of hydrocarbons. The aerobic biodegradability of this polymer andhydrocarbons sorbed to the polymer were tested. Soilmicroorganisms readily grew on the polymer, and twoorganisms, a bacterium and a fungus, capable of growthon the polymer were isolated. However, biodegradationof the polymer was very slow and possibly incomplete. Biodegradation of the polymer was evident as a changein appearance of the polymer, but disappearance of thepolymer was not detectable in liquid culturesincubated for six months or soil cultures incubatedfor one month. Destruction of the polymer by soilmicroorganisms at ambient temperature does not appearto be practical. Degradation of 14C-labeledhexadecane and phenanthrene mixed with crude oil inliquid cultures inoculated with soil microorganismswas used as an estimate of general hydrocarbondegradation. When nitrogen was not limiting, therates of hexadecane and phenanthrene degradation werethe same, whether those hydrocarbons were sorbed tothe polymer or not sorbed. When nitrogen waslimiting, the polymer stimulated the rate ofhexadecane degradation but not the rate ofphenanthrene degradation. The polymer may stimulatehexadecane degradation by serving as a source ofnitrogen. However, optimal degradation of sorbedhydrocarbons requires nitrogen addition. The resultssuggest that it may be feasible to decontaminate spentpolymer by biodegradation of sorbed hydrocarbons.
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  • 2
    ISSN: 1572-9729
    Keywords: Alcaligenes denitrificans ; biodegradation ; chloroaromatic ; mecoprop (R)-(+)-2(2-methyl-4-chlorophenoxy)propionic acid
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract An Alcaligenes denitrificans strain capable of utilizing theherbicide (R)-(+)-2(2-methyl-4-chlorophenoxy)propionicacid (mecoprop) as a sole carbon source was isolated fromsoil and cultured in liquid medium. Crude cell extracts of thebacterium were utilized in spectrophotometric assays toelucidate a biochemical pathway for degradation ofmecoprop. Results indicated a reaction sequence analogousto the degradation of 2,4-dichlorophenoxyacetic acid (2,4-D).GC-MS analysis provided direct evidence for thebiotransformation of mecoprop to the transient metabolite4-chloro-2-methylphenol (MCP). No NADPH-dependentactivity was observed during this reaction. Pyruvate wasverified as the second product derived from the aliphatic sidechain of mecoprop. MCP was subsequently transformed to asubstituted catechol by an NADPH-dependentmonooxygenase. When grown on mecoprop, A.denitrificans was adapted to oxidize catechol and its 4- and3-methylated derivatives indicating the broad substratespecificity of catechol dioxygenase. The microorganism wasdemonstrated to adopt the ortho mechanism of aromaticcleavage which resulted in the formation of2-methyl-4-carboxymethylene but-2-en-4-olide, a reactionintermediate of the β-ketoadipate pathway.
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Biodegradation 8 (1997), S. 167-175 
    ISSN: 1572-9729
    Keywords: benzene ; bioavailability ; biodegradation ; naphthalene ; sorption ; toluene
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Aerobic biodegradation of benzene, toluene andnaphthalene was studied in pre-equilibrated soil-waterslurry microcosms. The experiments were designed tosimulate biodegradation at waste sites where sorptionreaches equilibrium before biodegradation becomesimportant. Rates of biodegradation were reduced by thepresence of soil. For example, nearly completenaphthalene biodegradation (1.28 mg/L) by indigenoussoil bacteria occurred within 60 hours in aqueoussolution (soil-free) while it took two weeks todegrade the same amount in the presence of 0.47 kgsoil/L of water. The rate of biodegradation wasobserved to decrease with increasing organic compoundhydrophobicity, soil/water ratio, soil particle size,and soil organic carbon content. These resultsclearly indicate that the rate of biodegradation isaffected by both the extent and rate of sorption. Further analysis suggests that mass transfer couldcontrol the performance of in situ bioremediation forhighly hydrophobic organic contaminants which exhibita large extent of sorption and slow rate ofdesorption.
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  • 4
    ISSN: 1572-9729
    Keywords: biodegradation ; PCB ; Aroclor
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Orange peels, eucalyptus leaves, pine needles and ivy leaves were addedseparately to soil spiked with Aroclor 1242 (100 mgkg-1.Polychorinated biphenyls (PCBs) disappeared after six months in all theamended soils, but not in unamended soils. Although biphenyl was not addedto any of the soils, all four amended soils had much higher levels(108/g) of biphenyl-utilizing bacteria than the unamendedcontrol (103/g). Ten random isolates obtained from these soilswere identified as coryneform bacteria. Five isolates, that were distinctlydifferent, were studied further with respect to growth on pure terpenes andmetabolism of PCBs. The most effective strains were Cellulomonas sp. T109and R. rhodochrous T100, which metabolized 83% and 80% ofAroclor 1242, respectively, during a six day period of growth on cymene andlimonene, respectively. The bphA gene, cloned as a 2.8 Kb Sa/I fragment ofpAW6194 from cbpA (Walia et al. 1990) hybridized to total DNA of allcoryneform isolates, and to the well-established PCB degrader Rhodococcusgloberulus. In contrast, a 5 Kb XhoI-SmaI fragment of the bphA gene(Furukawa & Miyazaki 1986) did not show any homology to the genomic DNAof any of the isolates or to R. globerulus, but did hybridize to two otherwell-known PCB degraders Pseudomonas sp. LB400, and Alcaligenes eutrophusH850. The data presented herein indicate that terpenes may be naturalsubstrates for biphenyl-degrading bacteria and may enhance substantialtransformation of Aroclor 1242.
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  • 5
    ISSN: 1572-9729
    Keywords: natural attenuation ; biodegradation ; hydrocarbon ; groundwater ; BTEX ; MTBE ; site characterization ; fate and transport
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract After eighteen months of active remediation at a JP-4 jet-fuel spill, aresidual of unremediated hydrocarbon remained. Further site characterizationwas conducted to evaluate the contribution of natural attenuation to controlexposure to hazards associated with the residual contamination in thesubsurface. Activities included the detailed characterization ofground-water flow through the spill; the distribution of fuel contaminantsin groundwater; and the analysis of soluble electron acceptors moving intothe spill from upgradient. These activities allowed a rigorous evaluation ofthe transport of contaminants from the spill to the receptor of groundwater,the Pasquotank River. The transport of dissolved contaminants of concern,that is benzene, toluene, ethyl benzene, xylene isomers (BTEX) andmethyl-tertiary-butyl ether (MTBE), into the river from the source area wascontrolled by equilibrium dissolution from the fuel spill to the adjacentgroundwater, diffusion in groundwater from the spill to permeable layers inthe aquifer, and advective transport in the permeable layers. The estimatedyearly loading of BTEX compounds and MTBE into the receptor was trivial evenwithout considering biological degradation. The biodegradation ofhydrocarbon dissolved in groundwater through aerobic respiration,denitrification, sulfate reduction, and iron reduction was estimated fromchanges in ground-water chemistry along the flow path. The concentrations oftarget components in permanent monitoring wells continue to decline overtime. Long term monitoring will ensure that the plume is under control, andno further active remediation is required.
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Biodegradation 8 (1997), S. 297-311 
    ISSN: 1572-9729
    Keywords: benzothiophenes ; biodegradation ; biodesulfurization ; dibenzothiophenes ; thiacycloalkanes ; thiophenes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Sulfur heterocycles are common constituents ofpetroleum and liquids derived from coal, and they arefound in some secondary metabolites of microorganismsand plants. They exist primarily as saturated ringsand thiophenes. There are two major objectives drivinginvestigations of the microbial metabolism oforganosulfur compounds. One is the quest to develop aprocess for biodesulfurization of fossil fuels, andthe other is to understand the fates of organosulfurcompounds in petroleum- or creosote-contaminatedenvironments which is important in assessingbioremediation processes. For these processes to besuccessful, cleavage of different types of sulfurheterocyclic rings is paramount. This paper reviewsthe evidence for microbial ring cleavage of a varietyof organosulfur compounds and discusses the fewwell-studied cases which have shown that the C–S bondis most susceptible to breakage leading to disruptionof the ring. In most cases, the introduction of one ormore oxygen atom(s) onto the adjacent C atom and/oronto the S atom weakens the C–S bond, facilitating itscleavage. Although much is known about the thiophenering cleavage in dibenzothiophene, there is still agreat deal to be learned about the cleavage of othersulfur heterocycles.
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  • 7
    ISSN: 1572-9729
    Keywords: biodegradation ; cometabolism ; nongrowth substrate ; conventional carbon sources ; inhibition ; pH regulation ; toxicity
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The enhancement of biodegradation of phenol and4-chlorophenol (4-cp) as a cometabolised compound byPseudomonas putida ATCC 49451 was accomplishedby augmenting the medium with conventional carbonsources such as sodium glutamate and glucose. Comparedwith phenol as the sole carbon source, the addition of1 gl-1 sodium glutamate increased the toxicitytolerance of cells toward 4-cp and significantlyimproved the biodegradation rates of both phenol and4-cp even when the initial concentration of 4-cp wasas high as 200 mgl-1. On the other hand,supplementation of glucose caused a significant dropin the medium pH from 7.2 to 4.3 resulting in areduction of degradation rate, leaving a considerableamount of 4-cp undegraded when the initialconcentration of 4-cp was higher than 100 mgl-1.By regulating the pH of the medium, however,enhancement of degradation rates of phenol and 4-cp inthe presence of glucose was achieved with aconcomitant complete degradation of phenol and 4-cp.
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  • 8
    Electronic Resource
    Electronic Resource
    Springer
    Biodegradation 8 (1997), S. 349-356 
    ISSN: 1572-9729
    Keywords: biodegradation ; bioremediation ; acclimation ; Everglades ; mineralization ; nitrophenol ; soil
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The Everglades in South Florida are a unique ecologicalsystem. As a result of the widespread use of pesticides andherbicides in agricultural areas upstream from these wetlands,there is a serious potential for pollution problems in theEverglades. The purpose of this study was to evaluate theability of indigenous microbial populations to degradexenobiotic organic compounds introduced by agricultural andother activities. Such biodegradation may facilitate theremediation of contaminated soils and water in the Everglades.The model compound selected in this study is 4-nitrophenol, achemical commonly used in the manufacture of pesticides. Themineralization of 4-nitrophenol at various concentrations wasstudied in soils collected from the Everglades. Atconcentrations of 10 and 100 µg/g soil, considerablemineralization occurred within a week. At a higherconcentration, i.e., 10 mg/g soil, however, no mineralizationof 4-nitrophenol occurred over a 4-month period; such a highconcentration apparently produced an inhibitory effect. Therate and extent of 4-nitrophenol mineralization was enhancedon inoculation with previously isolated nitrophenol-degradingmicroorganisms. The maximum mineralization extent measured,however, was less than 30% suggesting conversion to biomassand/or unidentified intermediate products. These resultsindicate the potential for natural mechanisms to mitigate theadverse effects of xenobiotic pollutants in a complex systemsuch as the Everglades.
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  • 9
    Electronic Resource
    Electronic Resource
    Springer
    Biodegradation 8 (1997), S. 357-361 
    ISSN: 1572-9729
    Keywords: alkylpyridine ; subsurface bacteria ; biodegradation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Ten bacterial strains were isolated fromalkylpyridine polluted sediments 7.6 m below thesurface. These strains were able to degrade 11different alkylpyridine isomers. Degradation ratesdepended on number and position of the alkyl group. Isomers with an alkyl group at position 3 were moreresistant to microbial attack. Of the 10 strains, 6isolates were selected for detailed study. Theseisolates mineralized the isomers to CO2,NH4 +, and biomass. All strains weregram-negative rods with a strict aerobic metabolism. Characterization of physiological and biochemicalproperties revealed similarity between strains. Eeachstrain however, had a limited substrate range whichenabled it to degrade no more than 2 to 3 compounds ofthe 14 alkylpyridine isomers tested. Examination ofthe genetic variability among cultures with therandomly amplified polymorphic DNA technique revealedhigh levels of genomic DNA polymorphism. The highestsimilarity between 2 strains (0.653) was observedbetween 2-picoline and 3-picoline degrading cultures. The molecular basis of the differences in substratespecificity is under investigation.
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Biodegradation 8 (1997), S. 287-296 
    ISSN: 1572-9729
    Keywords: asphaltene ; bioavailability ; biodegradation ; crude oil ; diffusivity ; modeling
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Crude oil is a complex mixture ofseveral different structural classes of compoundsincluding alkanes, aromatics, heterocyclic polarcompounds, and asphaltenes. The rate and extent ofmicrobial degradation of crude oil depends on theinteraction between the physical and biochemicalproperties of the biodegradable compounds and theirinteractions with the non-biodegradable fraction. Inthis study we have systematically altered theconcentration of non-biodegradable material in thecrude oil and analyzed its impact on transport of thebiodegradable components of crude oil to themicroorganisms. We have also developed a mathematicalmodel that explains and accounts for the dependence ofbiodegradation of crude oil through a putativebioavailability parameter. Experimental resultsindicate that as the asphaltene concentration in oilincreases, the maximum oxygen uptake in respirometersdecreases. The mathematically fitted bioavailabilityparameter of degradable components of oil alsodecreases as the asphaltene concentration increases.
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