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  • Evolution
  • Springer  (32)
  • Annual Reviews
  • Blackwell Publishing Ltd
  • Campus Verlag
  • 2020-2024
  • 2005-2009
  • 1990-1994  (32)
  • 1980-1984
  • 1993  (32)
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Publisher
  • Springer  (32)
  • Annual Reviews
  • Blackwell Publishing Ltd
  • Campus Verlag
Years
  • 2020-2024
  • 2005-2009
  • 1990-1994  (32)
  • 1980-1984
Year
  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Mycorrhiza 4 (1993), S. 1-4 
    ISSN: 1432-1890
    Keywords: Tropics ; Mycotrophy ; Spore dispersal ; Community composition ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract This article introduces reports concerning the occurrence of mycorrhizae on epiphytes in Costa Rica, Ethiopia, Venezuela, Malaysia, and Mexico. Association of vesicular-arbuscular mycorrhizal fungi with the roots of epiphytes is not well known. Vesicular-arbuscular mycorrhizal fungi (VAM) do occur in the canopy, but are uncommon except in certain sites and host taxa. Occurrence of VAM on epiphytes may be constrained by mineral nutrient availability and spatial heterogeneity in the canopy. Nevertheless, epiphytes present unique opportunities to study influences of mycorrhizae on vascular plant community composition and on the evolution of mycorrhizal associations.
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  • 2
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    Journal of molecular evolution 37 (1993), S. 426-434 
    ISSN: 1432-1432
    Keywords: Primate ; Evolution ; Protamine ; Polymerase chain reaction ; Sperm proteins
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Protamine P1 genes have been sequenced by PCR amplification and direct DNA sequencing from 9 primates representing 5 major families, Cebidae (new world monkeys), Cercopithecidae (old world monkeys), Hylobatidae (gibbons), Pongidae (gorilla, orangutan, and chimpanzee), and Hominidae (human). In this recently diverged group of primates these genes are clearly orthologous but very variable, both at the DNA level and in their expressed amino acid sequences. The rate of variation amongst the protamine Pls indicates that they are amongst the most rapidly diverging polypeptides studied. However, some regions are conserved both in primates and generally in other placental mammals. These are the 13 N-terminal residues (including a region of alternating serine and arginine residues (the motif SRSR, res. 10–13) susceptible to Ser phosphorylation), a tract of six Arg residues (res. 24–29) in the center of the molecule, and a six-residue region (RCCRRR, res. 39–44), consisting of a pair of cysteines flanked by arginines. Detailed consideration of nearest neighbor matrices and trees based on maximum parsimony indicates that PI genes from humans, gorillas, and chimpanzees are very similar. The amino acid and nucleotide differences between humans and gorillas. are fewer than those between humans and chimpanzees. This finding is at variance with data from DNA-DNA hybridization and extensive globin and mitochondrial DNA sequences which place human and chimpanzee as closest relatives in the super family, Hominoidea. This may be related to the fact that protamine Pls are expressed in germ line rather than somatic cells. In contrast to the variability of the exon regions of the protamine P1 genes, the sequence of the single intron is highly conserved.
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  • 3
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    Journal of molecular evolution 36 (1993), S. 448-457 
    ISSN: 1432-1432
    Keywords: Retrovirus ; HIV ; CD4 ; Minus strand ; Alternate reading frame ; Frameshift ; Divergence ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A local sequence similarity of HIV envelope proteins (gp120 and gp41) to immunoglobulins suggests that a mimicry phenomenon may form the basis of the HIV-cell membrane interaction and of HIV-induced autoimmune reaction. We explored the hypothesis of any deeper relationship between HIV env proteins and immunoglobulin family members. An overall DNA sequence similarity between gp41 coding region of env gene and the HIV-receptor CD4 gene was observed and a 14-base-long oligonucleotide, almost unique in the GenBank, was found in gp41 and CD4 genes. The alignment of env gene to CD4 gene and to 84 different sequences showed a significantly higher homology score and a nonrandom similarity in the CD4-env alignment. A significant similarity was also found between the env protein and the sequence encoded by an alternate reading frame of CD4 gene. Our observations suggest that gp41 coding region might have a different origin than the gp120 coding region of the env gene, and that a divergent evolution might link gp41 to CD4 or immunoglobulin family members. In this study the analysis of alternate-reading-frame products is also proposed as a novel approach to investigate evolutionary links and structure-function relationships.
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  • 4
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    Journal of molecular evolution 36 (1993), S. 545-554 
    ISSN: 1432-1432
    Keywords: Echinoderms ; Evolution ; Phylogeny ; mtDNA ; Mitochondrial gene arrangements
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Previous analyses have demonstrated that, among the echinoderms, the sea star (class: Asteroidea) mitochondrial genome contains a large inversion in comparison to the mitochondrial DNA of sea urchins (class: Echinoidea). Polymerase chain reaction amplification, DNA cloning, and sequencing have been used to examine the relationships of the brittle stars (class: Ophiuroidea) and sea cucumbers (class: Holothuroidea) to the sea stars and sea urchins. The DNA sequence of the regions spanning potential inversion junctions in both brittle stars and sea cucumbers has been determined. This study has also revealed a highly modified tRNA cluster in the ophiuroid mitochondrial genome. Our data indicate mitochondrial gene arrangement patterns that group the sea cucumbers with sea urchins and sea stars with brittle stars. This use of molecular characters clarifies the relationships among these classes.
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  • 5
    ISSN: 1432-1432
    Keywords: Evolution ; Teleostei ; Clupea harengus ; Esox lucius ; Fish ; Polymerase chain reaction ; Calcium binding
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Ependymins represent the predominant protein constituents in the cerebrospinal fluid of many teleost fish and they are synthesized in meningeal fibroblasts. Here, we present the ependymin sequences from the herring (Clupea harengus) and the pike (Esox lucius). A comparison of ependymin homologous sequences from three different orders of teleost fish (Salmoniformes, Cypriniformes, and Clupeiformes) revealed the highest similarity between Clupeiformes and Cypriniformes. This result is unexpected because it does not reflect current systematics, in which Clupeiformes belong to a separate infradivision (Clupeomorpha) than Salmoniformes and Cypriniformes (Euteleostei). Furthermore, in Salmoniformes the evolutionary rate of ependymins seems to be accelerated mainly on the protein level. However, considering these inconstant rates, neither neighbor joining trees nor DNA parsimony methods gave any indication that a separate euteleost infradivision exists.
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  • 6
    ISSN: 1432-1432
    Keywords: Ribonuclease ; Evolution ; Gene duplication ; Ruminants
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Mammalian pancreatic ribonucleases form a family of homologous proteins that has been extensively investigated. The primary structures of these enzymes were used to derive phylogenetic trees. These analyses indicate that the presence of three strictly homologous enzymes in the bovine species (the pancreatic, seminal, and cerebral ribonucleases) is due to gene duplication events which occurred during the evolution of ancestral ruminants. In this paper we present evidence that confirms this finding and that suggests an overall structural conservation of the putative ribonuclease genes in ruminant species. We could also demonstrate that the sequences related to ox ribonuclease coding regions present in genomic DNA of the giraffe species are the orthologues of the bovine genes encoding the three ribonucleases mentioned above.
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  • 7
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    Journal of molecular evolution 37 (1993), S. 71-76 
    ISSN: 1432-1432
    Keywords: Evolution ; Catalase ; Phylogenetic tree
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Heme-containing catalase sequences from 20 different organisms representing prokaryotes, fungi, animals, and plants have been compiled for phylogenetic reconstruction. Phylogenies based on distance and parsimony analysis show that fungal and animal catalases can be derived from one ancestor, whereas bacterial catalases fail to form a monophyletic group. Plant catalases appear to form a second class of catalases that arose independently from a possible prokaryotic ancestor.
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  • 8
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    Journal of molecular evolution 37 (1993), S. 93-108 
    ISSN: 1432-1432
    Keywords: DNA ; Base composition ; Vertebrates ; Eutheria ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The compositional distributions of high molecular weight DNA fragments from 20 species belonging to 9 out of the 17 eutherian orders were investigated by analytical CsCl density gradient centrifugation and by preparative fractionation in Cs2SO4/BAMD density gradients followed by analysis of the fractions in CsCl. These compositional distributions reflect those of the isochores making up the corresponding genomes. A “general distribution” was found in species belonging to eight mammalian orders. A “myomorph distribution” was found in Myomorpha, but not in the other rodent infraorders Sciuromorpha and Histricomorpha, which share the general distribution. Two other distributions were found in a megachiropteran (but not in microchiropteran, which, again, shares the general distribution) and in pangolin (a species from the only genus of the order Pholidota), respectively. The main difference between the general distribution and all other distributions is that the former contains sizable amounts (6–10%) of GC-rich isochores (detected as DNA fragments equal to, or higher than, 1.710 g/cm3 in modal buoyant density), which are scarce, or absent, in the other distributions. This difference is remarkable because gene concentrations in mammalian genomes are paralleled by GC levels, the highest gene concentrations being present in the GC-richest isochores. The compositional distributions of mammalian genomes reported here shed light on mammalian phylogeny. Indeed, all orders investigated, with the exception of Pholidota, seem to share a common ancestor. The compositional patterns of the megachiropteran and of Myomorpha may be derived from the general pattern or have independent origins.
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  • 9
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    Journal of molecular evolution 36 (1993), S. 509-516 
    ISSN: 1432-1432
    Keywords: Thrombospondin ; Evolution ; Adhesive glycoproteins
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Thrombospondin-1 is an adhesive glycoprotein that is involved in cellular attachment, spreading, migration, and proliferation. To date, four genes have been identified that encode for the members of the thrombospondin gene family. These four genes are homologous to each other in the EGF-like (type 2) repeats, the calcium-binding (type 3) motifs, and the COOH-terminal. The latter has been reported to be a cell-binding domain in thrombospondin-1. Phylogenetic trees have been constructed from the multisequence alignment of thrombospondin sequences from human, mouse, chicken, and frog. Two different algorithms generate comparable results in terms of the topology and the branch lengths. The analysis indicates that an early form of the thrombospondin gene duplicated about 925 million years ago. The gene duplication that produced the thrombospondin-1 and -2 branches of the family is predicted to have occurred 583 million years ago, whereas the gene duplication that produced the thrombospondin-3 and -4 branches of the family is predicted to have occurred 644 million years ago. These results indicate that the members of the thrombospondin gene family have existed throughout the evolution of the animal kingdom and thus probably participate in functions that are common to most of its members.
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  • 10
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    Journal of molecular evolution 37 (1993), S. 544-551 
    ISSN: 1432-1432
    Keywords: Isochores ; DNA ; Coding sequences ; Birds ; Mammals ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The compositional distributions of large (main-band) DNA fragments from eight birds belonging to eight different orders (including both paleognathous and neognathous species) are very broad and extremely close to each other. These findings, which are paralleled by the compositional similarity of homologous coding sequences and their codon positions, support the idea that birds are a monophyletic group. The compositional distribution of third-codon positions of genes from chicken, the only avian species for which a relatively large number of coding sequences is known, is very broad and bimodal, the minor GC-richer peak reaching 100% GC. The very high compositional heterogeneity of avian genomes is accompanied (as in the case of mammalian genomes) by a very high speciation rate compared to cold-blooded vertebrates which are characterized by genomes that are much less heterogeneous. The higher GC levels attained by avian compared to mammalian genomes might be correlated with the higher body temperature (41–43°C) of birds compared to mammals (37°C). A comparison of GC levels of coding sequences and codon positions from man and chicken revealed very close average GC levels and standard deviations. Homologous coding sequences and codon positions from man and chicken showed a surprisingly high degree of compositional similarity which was, however, higher for GC-poor than for GC-rich sequences. This indicates that GC-poor isochores of warm-blooded vertebrates reflect the composition of the isochores of the genome of the common reptilian ancestor of mammals and birds, which underwent only a small compositional change at the transition from cold- to warm-blooded vertebrates. In contrast, the GC-rich isochores of birds and mammals are the result of large compositional changes at the same evolutionary transition, where were in part different in the two classes of warm-blooded vertebrates.
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  • 11
    ISSN: 1432-1432
    Keywords: Evolution ; Gene regulation ; Drosophila ; Adaptation ; Enzymes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In an effort to understand the forces shaping evolution of regulatory genes and patterns, we have compared data on interspecific differences in enzyme expression patterns among the rapidly evolving Hawaiian picture-winged Drosophila to similar data on the more conservative virilis species group. Divergence of regulatory patterns is significantly more common in the former group, but cause and effect are difficult to discern. Random fixation of regulatory variants in small populations and/or during speciation may be somewhat more likely than divergence driven by selection. Within the picture-winged group, we also have compared enzymes that fulfill different metabolic roles. There are highly significant differences between individual enzymes, but no obvious correlations to functional categories.
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  • 12
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    The visual computer 9 (1993), S. 466-476 
    ISSN: 1432-2315
    Keywords: Evolution ; Genetic algorithms ; Procedural models
    Source: Springer Online Journal Archives 1860-2000
    Topics: Computer Science
    Notes: Abstract This paper describes how the evolutionary mechanisms of variation and selection can be used to “evolve” complex equations used by procedural models for computer graphics and animation. An interactive process between the user and the computer allows the user to guide evolving equations by observing results and providing aesthetic information at each step of the process. The computer automatically generates random mutations of equations and combinations between equations to create new generations of results. This repeated interaction between user and computer allows the user to search hyperspaces of posible equations without being required to design the equations by hand or even understand them. Three examples of these techniques have been implemented and are described: procedurally generated pictures and textures, three-dimensional shapes represented by parametric equations, and two-dimensional dynamical systems described by sets of differential equations. It is proposed that these methods have potential as powerful tools for exploring procedural models and achieving flexible complexity with a minimum of user input and knowledge of details.
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  • 13
    ISSN: 1432-1939
    Keywords: Plaice ; Life-history ; Evolution ; Maturation ; Reproduction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract This paper attempts to interpret the observed changes in reproductive strategy of female North Sea plaice since 1900 in the light of possible genetical selection exerted by the fisheries. Somatic growth of juvenile plaice increased between the 1950s and the 1980s, probably as a response to an increase in food availability. Adult growth rate was constant, except during a period of increased population abundance when somatic growth decreased. Both length (L mat) and age at first sexual maturity decreased since 1990. No firm evidence was obtained for a change in total reproductive investment, although size-specific fecundity was reduced in the period of increased population abundance, suggesting a trade-off between egg numbers and egg size. Analysis of the phenotypic response of maturation to an increase in juvenile growth suggested that only a part of the decrease in L mat could be ascribed to the observed increase in juvenile growth. The unexplained part of the change in L mat corresponded with the predicted change due to genetical selection by the fisheries. This supported the hypothesis that fishing caused a genetical change in L mat, although an unequivocal interpretation is not possible from a descriptive study.
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  • 14
    ISSN: 1432-0983
    Keywords: Triticum aestivum ; Secale cerele ; Ribosomal RNA genes ; Mitochondrial DNA ; Recombining-repeats ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The mitochondrial genomes of wheat and rye each contain a three-member family of recombining repeat peat sequences (the “18S/5S repeat”) that encode genes for 18S and 5S rRNAs (rrn18 and rrn5) and tRNAfMet (trnfM). Here we present, for wheat and rye, the sequence and boundaries of the “common sequence unit” (CSU) that is shared between all three repeat copies in each species. The wheat CSU is 4,429 base-pairs long and contains (in addition to trnfM, rrn18 and rrn5) a putative promoter, three tRNA-like elements (“t-elements”), and part of a pseudogene (“ψatpA c”) that is homologous to chloroplast atpA, which encodes the α subunit of chloroplast F1 ATPase. The rye CSU is somewhat smaller (2,855 base pairs) but contains much the same genic and other sequence elements as its wheat counterpart, except that two of the three t-elements as well as ψatpA c are found in only one of the three downstream flanks of the 18S/5S repeat, outside the CSU boundaries. In interpreting the seuuence data in terms of the evolutionary history of the 18S/5S-repeat family of wheat and rye, we conclude that (1) the wheat-rye form of the 18S/5S repeat most likely originated between 3 and 14 million years ago, in a lineage that gave rise to wheat and rye but not to barley, oasts, rice or maize; (2) the close linkage (1-bp apart) between trnfM and rrn18 is similarly limited in its taxonomic distribution to the wheat/rye lineage; (3) the trnfM-rrn18 pair arose via a single mutation that inserted a sequence block containing trnfM immediately upstream of rrn18; and (4) the presence of a putative promoter upstream of rrn18 in all wheat and rye repeats is consistent with all three repeat copies being transcriptionally active. We discuss these conclusions in the light of the possible functional significance of recombining-repeats in plant mitochondrial genomes.
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  • 15
    ISSN: 1432-0983
    Keywords: Evolution ; Algae ; Plastid ; Endocytobiosis ; Molecular clock ; psbD
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The nucleotide sequences of the plastidal psbD genes of Bumilleriopsis filiformis and Porphyridium purpureum (encoding the D2 protein of photosystem II) are reported in this paper. The Bumilleriopsis sequence clusters together with Porphyridium when a most parsimonious protein tree of D2 sequences is constructed. A composite D1/D2 protein-similarity network reveals that neither the three red algal sequences nor the two heterokontophyte sequences (Bumilleriopsis, xanthophytes and Ectocarpus, phaeophytes) group together. Therefore, the Heterokontophyta and Rhodophyta may be heterogeneous groups. Instead, it emerges that the D1/D2 proteins of Porphyridium and Bumilleriopsis clearly form a tight cluster. D1 and D2 proteins apparently do not provide a reliable molecular clock. These results fit into hypotheses proposing a polyphyletic origin for complex plastids, even among the supposedly “natural” group of heterokontophytes.
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  • 16
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    Journal of evolutionary economics 3 (1993), S. 199-224 
    ISSN: 1432-1386
    Keywords: Technological change ; Institutions ; Evolution ; Games ; C71 ; 017 ; 031
    Source: Springer Online Journal Archives 1860-2000
    Topics: Economics
    Notes: Abstract In this paper, we study a co-evolutionary model of economic change at two hierarchical levels. At the lower level, “institutions” are given and the focus is on how resources are allocated and innovation produced in response to the pay-off structure induced by prevailing institutions. At the higher level, it is the institutions themselves that change as the outcome of a process of social bargaining. The main objective of the paper is to study the interaction between these two levels of change, attempting to provide some insight on issues like technological/institutional divergence, technological dead-end, institutional inertia, etc.
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  • 17
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    Theoretical and applied genetics 85 (1993), S. 809-821 
    ISSN: 1432-2242
    Keywords: Evolution ; Frequency-dependence ; Pathogens ; Host diversity ; Equilibrium frequencies
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Eighteen populations, composed of four wheat (Triticum aestivum) varieties that were originally mixed together at equal frequencies, were grown for one-to-three generations at two locations. In addition, pure stands of the four varieties were grown in each year. Populations were either exposed to two stripe rust (Puccinia striiformis) races, protected from stripe rust, or exposed to alternating years of diseased and disease-free conditions. Regression of the logit of a variety's frequency versus generation number was used to calculate the relative fitness of each variety in each population. These analyses suggest that the relative fitnesses of the wheat varieties were affected by disease and geographic location and were constant over time. However, frequency-changes of varieties in the mixtures were negatively correlated with their planting frequencies (0.0001 〈 P 〈 0.085 in 14 out of 16 cases), suggesting that fitnesses were frequency-dependent in both the presence and absence of disease. We hypothesize that failure to detect frequency-dependence of fitness in the logit analyses was due to a limited number of generations and a limited range of initial variety frequencies. This is supported by data from longer-term studies in the literature that provide evidence for frequency-dependence of fitness in plant mixtures. Analyses of currently available field data suggest that stable equilibria may be a more likely outcome for mixtures of varieties that are more closely related and/or more uniformly adapted to the environment in which they are grown.
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  • 18
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    Theoretical and applied genetics 86 (1993), S. 811-821 
    ISSN: 1432-2242
    Keywords: Brassica ; Interspecific hybridization ; Amphidiploid ; RFLP ; Evolution ; Nuclear ; cytoplasmic interaction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In a previous study we proposed that cytoplasmic genomes have played an important role in the evolution of Brassica amphidiploid species. Based on this and other studies, we hypothesized that interactions between the maternal cytoplasmic genomes and the paternal nuclear genome may cause alterations in genome structure and/or gene expression of a newly synthesized amphidiploid, which may play an important role in the evolution of natural amphidiploid species. To test this hypothesis, a series of synthetic amphidiploids, including all three analogs of the natural amphidiploids B. napus, B. juncea, and B. Carinata and their reciprocal forms, were developed. These synthetic amphidiploids were characterized for morphological traits, chromosome number, and RFLPs revealed by chloroplast, mitochondrial, and nuclear DNA clones. The maternal transmission of chloroplast and mitochondrial genomes was observed in all of the F1 hybrids examined except one hybrid plant derived from the B. rapa x B. oleracea combination, which showed a biparental transmission of organelles. However, the paternal chloroplast and mitochondrial genomes were not observed in the F2 progeny. Nuclear genomes of synthetic amphidiploids had combined RFLP patterns of their parental species for all of the nuclear DNA clones examined. A variation in fertility was observed among self-pollinated progenies of single amphidiploids that had completely homozygous genome constitutions. Comparisons between natural and synthetic amphidiploids based on restriction fragment length polymorphism (RFLP) patterns indicated that natural amphidiploids are considerably more distant from the progenitor diploid species than the synthetic amphidiploids. The utility of these synthetic amphidiploids for investigating the evolution of amphidiploidy is discussed.
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  • 19
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    Theoretical and applied genetics 85 (1993), S. 616-624 
    ISSN: 1432-2242
    Keywords: Wheat ; Glutenin ; Dough ; Evolution ; RFLPs
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A genomic fragment containing the Bx17 high-molecular-weight (HMW) glutenin gene was isolated from a wheat genomic library. The fragment contains a coding region of 2.82kb with 1.98-kb downstream and 12.8-kb upstream flanking regions. The fragment was sequenced and compared with previously published glutenin genes from chromosomes 1A, 1B and 1D using a computer alignment package. The Bx17 gene shows marked similarity to the Bx7 gene sequence. A phenetic tree derived from the alignments is presented. Also shown are restriction fragment length polymorphisms (RFLPs) at the glutenin loci in a set of Australian and international wheat varieties using different regions of the glutenin clone as probes. The RFLPs correlated well with the protein composition in all cultivars analysed.
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  • 20
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    Theoretical and applied genetics 86 (1993), S. 159-165 
    ISSN: 1432-2242
    Keywords: Allozymes ; Chloroplast DNA ; Introgression ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Allozyme variation was examined in 22 populations of Pinus densiflora (Sieb, et Zucc.) and four geographic varieties of P. sylvestris (L.): var ‘lapponica’ (Fries, Hartman), var ‘armena’ (Komarov), var ‘mongolica’ (Litvinov) and var ‘sylvestriformis’ (Takenouchi). In addition, we developed paternal chloroplast (cp) DNA markers that distinguish P. densiflora from var ‘lapponica’, var ‘armena’ and var ‘mongolica’. UPGMA cluster analysis based on Nei's distances between all pairwise combinations of the 22 populations revealed patterns corresponding strictly to geographic origin and taxonomic status. Analysis of allozyme variation in var ‘lapponica’, var ‘armena’ and var ‘mongolica’ demonstrated a high level of intrapopulational variability but a low level of interpopulational differentiation. It appears that the late Pleistocene blending of genetically diverse populations was responsible for the observed variation patterns. The constructed phylogenetic trees also showed late divergence of these three varieties. The var ‘sylvestri formis’ was genetically distinct from the other three P. sylvestris varieties. The genetic distances separating var ‘sylvestriformis’ from P. densiflora and the other taxa lend support to a separate taxonomic status for var ‘sylvestriformis’ and a close relation with P. densiflora. We found that var ‘sylvestriformis’ harbors admixtures of allozymes and cpDNA from both P. sylvestris and P. densiflora, which suggests an introgressive nature of this variety. Levels of intrapopulational variability were similar in P. sylvestris and P. densiflora, but interpopulational differentiation was much higher in P. densiflora. In the constructed phylogenetic trees, populations of this species were characterized by relatively long internode distances and branch lengths. The present results suggest that P. densiflora has a more advanced evolutionary age than P. sylvestris.
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  • 21
    ISSN: 1432-2242
    Keywords: Sugar beet ; Beta species ; DNA “finger-printing” ; Cluster analysis ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Forty-one accessions of the genusBeta representing wild and cultivated species of all sections were analyzed by DNA “fingerprinting”. Four sugar beet minisatellite DNA probes revealed characteristic banding patterns with Southern-hybridizedBeta DNA restricted withHindIII. A total of 111 polymorphic RFLP bands were scored across all accessions. Cluster analysis based on genetic similarity estimates for all 820 combinations of accessions revealed the following results. (1) All accessions could unambiguously be identified by a characteristic RFLP banding pattern. (2) The sugar beet cultivars examined displayed a low level of genetic diversity; they showed high similarity toB. Vulgaris ssp.maritima but low genetic similarity to the other wild species of section I. (3) In most cases, the present taxonomic classification of the genusBeta was confirmed. Species of sections II, III, and IV were clearly distinguishable from those of section I except forB. Macrocarpa, which showed high similarity to wild species of section II. In a second experiment, 108 single-copy RFLP probes from sugar beet were Southern hybridized withB. procumbens DNA. A surprisingly low degree of homology (34%) was found. The results are discussed with regard to the taxonomic classification of the genusBeta.
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  • 22
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    Theoretical and applied genetics 87 (1993), S. 587-592 
    ISSN: 1432-2242
    Keywords: Guizotia abyssinica ; Genome ; Interspecific hybridization ; Evolution ; Karyotype
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Guizotia abyssinica, G. schimperi and G. scabra are diploid species (2n=2x=30) characterised by 15 bivalents during prophase-I/metaphase-I of meiosis. The former species is cultivated whereas the latter two are wild. Interspecific hybrids between these three species were generated and the F1 hybrids were analysed to assess cytogenetic relationships and crop evolution within the genus Guizotia. Meiotic chromosome configurations at diakenesis/metaphase-I in the pollen mother cells of hybrids averaged 0.25I + 14.60II + 0.15IV for G. abyssinica x G. schimperi, 0.05I + 13.6II + 0.14III + 0.58IV for G. abyssinica x G. scabra, and 0.8I + 12.7II + 0.08III + 0.88IV for G. schimperi x G. scabra. Based upon the results of our investigations we conclude that the genomes of G. abyssinica and G. schimperi are similar and homologous, whereas the G. scabra genome is only partially homologous to that of G. abyssinica/G. schimperi. Furthermore, the crop species G. abyssinica might have originated from G. schimperi through selection and cultivation; chromosome translocations appear to have played a significant role in the divergence and differentiation of these three species.
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  • 23
    ISSN: 1432-0878
    Keywords: Cerebellum ; Evolution ; Brain, vertebrate ; Pons ; Telencephalon ; Carassius auratus, Pantodon buchholzi (Teleostei)
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract Among vertebrates, telencephalo-pontine systems exist only in birds and mammals. However, three nuclei in the diencephalon and mesencephalon of teleost fishes have been indicated — analogous to the pons — to represent relay stations between telencephalon and cerebellum. Since two of these nuclei (dorsal preglomerular nucleus, dorsal tegmental nucleus) have only been described in the highly derived, electrosensory mormyrids, we investigated telencephalic connections in two nonelectrosensory teleosts, the goldfish Carassius auratus and the freshwater butterflyfish Pantodon buchholzi, and cerebellar connections only in the latter species, since for C. auratus these connections are already established. Horseradish peroxidase tracing reveals that C. auratus has a dorsal tegmental nucleus and a paracommissural nucleus both of which are telencephalo-recipient and project to the cerebellum, and that P. buchholzi has a dorsal preglomerular nucleus with such connections. These results extend our knowlegde of the distribution and, therefore, the phylogeny of telencephalo-cerebellar systems in teleosts. Similar to tetrapods, teleosts appear to have developed telencephalo-cerebellar systems several times independently.
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  • 24
    ISSN: 1617-4623
    Keywords: Rubisco small subunit ; Multigene family ; DNA sequence ; Gene conversion ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The nucleotide sequences of the entire gene family, comprising six genes, that encodes the Rubisco small subunit (rbcS) multigene family in Mesembryanthemum crystallinum (common ice plant), were determined. Five of the genes are arranged in a tandem array spanning 20 kb, while the sixth gene is not closely linked to this array. The mature small subunit coding regions are highly conserved and encode four distinct polypeptides of equal lengths with up to five amino acid differences distinguishing individual genes. The transit peptide coding regions are more divergent in both amino acid sequence and length, encoding five distinct peptide sequences that range from 55 to 61 amino acids in length. Each of the genes has two introns located at conserved sites within the mature peptide-coding regions. The first introns are diverse in sequence and length ranging from 122 by to 1092 bp. Five of the six second introns are highly conserved in sequence and length. Two genes, rbcS-4 and rbcS-5, are identical at the nucleotide level starting from 121 by upstream of the ATG initiation codon to 9 by downstream of the stop codon including the sequences of both introns, indicating recent gene duplication and/or gene conversion. Functionally important regulatory elements identified in rbcS promoters of other species are absent from the upstream regions of all but one of the ice plant rbcS genes. Relative expression levels were determined for the rbcS genes and indicate that they are differentially expressed in leaves.
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  • 25
    ISSN: 1617-4623
    Keywords: TOL plasmid ; Biodegradation ; Pseudornonas putida ; Evolution ; Mutation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract TOL plasmid pWW0 from Pseudomonas putida mt-2 encodes catabolic enzymes required for the oxidation of toluene and xylenes. The structural genes for these catabolic enzymes are clustered into two operons, the xylCMABN operon, which encodes a set of enzymes required for the transformation of toluene/xylenes to benzoate/toluates, and the xylXYZLTEGFJQKIH operon, which encodes a set of enzymes required for the transformation of benzoate/toluates to Krebs cycle intermediates. The latter operon can be divided physically and functionally into two parts, the xylXYZL cluster, which is involved in the transformation of benzoate/toluates to (methyl)catechols, and the xylTEGFJQKIH cluster, which is involved in the transformation of (methyl)catechols to Krebs cycle intermediates. Genes isofunctional to xylXYZL are present in Acinetobacter calcoaceticus, and constitute a benzoate-degradative pathway, while xylTEGFJQKIH homologous encoding enzymes of a methylphenol-degradative pathway and a naphthalene-degradative pathway are present on plasmid pVI150 from P. putida CF600, and on plasmid NAH7 from P. putida PpG7, respectively. Comparison of the nucleotide sequences of the xylXYZLTEGFJQKIH genes with other isofunctional genes suggested that the xylTEGFJQKIH genes on the TOL plasmid diverged from these homologues 20 to 50 million years ago, while the xylXYZL genes diverged from the A. calcoaceticus homologues 100 to 200 million years ago. In codons where amino acids are not conserved, the substitution rate in the third base was higher than that in synonymous codons. This result was interpreted as indicating that both single and multiple nucleotide substitutions contributed to the amino acid-substituting mutations, and hence to enzyme evolution. This observation seems to be general because mammalian globin genes exhibit the same tendency.
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  • 26
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    Molecular genetics and genomics 241 (1993), S. 586-594 
    ISSN: 1617-4623
    Keywords: Proteasome ; Arabidopsis ; Deletion mutation ; Gene expression ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A gene encoding a protein with extensive homology to the largest subunit of the multicatalytic proteinase complex (proteasome) has been identified in Arabidopsis thaliana. This gene, referred to as AtPSM30, is entirely encompassed within a previously characterized radiation-induced deletion, which may thus provide the first example of a proteasome null mutation in a higher eukaryote. However, the growth rate and fertility of Arabidopsis plants do not appear to be significantly affected by this mutation, even though disruption experiments in yeast have shown that most proteasome subunits are essential. Analysis of mRNA levels in developing seedlings and mature plants indicates that expression of AtPSM30 is differentially regulated during development and is slightly induced in response to stress, as has been observed for proteasome genes in yeast, Drosophila, and mammals. Southern blot analysis indicates that the Arabidopsis genome contains numerous sequences closely related to AtPSM30, consistent with recent reports of at least two other proteasome genes in Arabidopsis. A comparison of the deduced amino acid sequences for all proteasome genes reported to date suggests that multiple proteasome subunits evolved in eukaryotes prior to the divergence of plants and animals.
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  • 27
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    Molecular genetics and genomics 236 (1993), S. 440-442 
    ISSN: 1617-4623
    Keywords: Telomere ; Evolution ; Drosophila melanogaster ; Ascaris lumbricoides
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The DNA at the chromosomal termini of all eukaryotes from which it has been isolated contains a characteristic sequence motif consisting of tandem arrays of a regular or irregular repeat unit. These terminal repeats are thought to be essential for the maintenance of the chromosome ends. The sequences of the terminal repeats of all vertebrates studied thus far are identical and are similar enough to those of higher plants and some protozoans to cross-hybridize. However, previous studies have not detected cross-hybridization between the DNA of Drosophila mélanogaster and the terminal DNA sequences of any of several organisms tested. Recently, the first terminal DNA clone from a multicellular invertebrate, that of Ascaris lumbricoides, was reported also to consist of a tandem reiteration of a short sequence similar to those previously identified for other eukaryotes. Here I show that a probe for this sequence from A. lumbricoides fails to hybridize delectably to the DNA of D. melanogaster. Thus, in contrast to their conservation among vertebrates, the terminal chromosomal sequences appear not to be shared by all metazoan invertebrates.
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  • 28
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    Environmental biology of fishes 38 (1993), S. 197-208 
    ISSN: 1573-5133
    Keywords: Elasmobranchs ; Holocephalans ; Neuropeptides ; Brain ; Immunohistochemistry ; Reproduction ; Vertebrates ; Evolution ; Chondrichthyes ; Sharks ; Skates ; Ratfish
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Gonadotropin-releasing hormone (GnRH) is thought to play a fundamental role in the reproduction of cartilaginous fishes. The primary structures of the only form of GnRH in ratfish,Hydrolagus colliei, and one of four forms of GnRH in dogfish,Squalus acanthias, have recently been shown to be identical to a form originally isolated from birds (chicken GnRH-II). Phylogenetic studies indicate that this chicken GnRH-II molecule is the most highly conserved GnRH family member in vertebrates; it is present in animals from cartilaginous fishes to marsupials. However, the presence of four immunoreactive forms of GnRH inS. acanthias, but only one form inH. colliei suggests that the two subclasses of these species diverged a long time ago. Immunocytochemical localization of GnRH shows that it is found in the brains of all chondrichthyans examined to date. GnRH cell bodies and fibers were found in specific patterns throughout the brain in our studies of dogfish shark and black skate,Bathyraja kincaidii. The lack of immunoreactive GnRH fibers in the median eminence and the unique arrangement of the pituitary in Chondrichthyes suggest that transport of GnRH from the brain to the pituitary gonadotropes occurs in the systemic circulation. The use of this unconventional route is further supported by markedly higher levels of serum GnRH in ratfish compared with other vertebrates.
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  • 29
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    Space science reviews 66 (1993), S. 327-347 
    ISSN: 1572-9672
    Keywords: Evolution ; Binaries
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: Abstract This paper briefly reviews the competition between massive single star and massive close binary evolution the last two decades. The status of the binary evolutionary model is summarized, the assumptions and simplifications are critically discussed. Using all computations performed since 1970, general conclusions are drawn and a comparison with massive single star evolution is presented. Special attention is given at the assumptions behind the commonly accepted model for the mass gainer and a new accretion model is proposed. The binary results in combinarion with single star evolution are compared with observations of massive stars with emphasis on the HR diagram, star number counts, WR stars, SN 1987A, OBN and OBC stars.
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  • 30
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    Space science reviews 66 (1993), S. 405-408 
    ISSN: 1572-9672
    Keywords: Early-Type Stars ; Abundances ; Evolution ; Rotation ; Mixing
    Source: Springer Online Journal Archives 1860-2000
    Topics: Physics
    Notes: Abstract A model for massive main sequence (MS) stars is proposed that quantitatively accounts for the mass and helium discrepancies in luminous OB stars. The radiative envelope of the model consists of two zones being mixed by rotationally induced turbulent diffusion during the star's evolution on the MS. The rate of the mixing in the outer zone is assumed to be substantially lower than that in the inner zone. Both, the mass and helium discrepancy, are shown to be due to helium enrichment in the envelope produced by turbulent diffusion. Some arguments to support this double-zone stellar model are given.
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  • 31
    ISSN: 1573-5133
    Keywords: Scorpaenidae ; Ovary wall ; Peduncle ; Secretory cell ; Stroma ; Evolution ; Fish
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis The ovarian structure of the shortspine thornyhead,Sebastolobus alascanus (Scorpaeniformes), which is similar to the ovarian structure previously described only for the pigmy lion fish,Dendrochirus brachypterus (Scorpaeniformes), is specialized for the production and expulsion of pelagic gelatinous egg masses. The germinative tissue and oocytes ofS. alascanus encircle a mass of spongy stroma that is located within the center of the ovary. The stroma is attached to the ovary wall only at the anterior end of each ovarian lobe; hence, the ovarian lumen surrounds the stroma, germinative tissue, and oocytes. Secondary oocyte development takes place on the ends of vascularized peduncles that are protrusions of the ovarian stroma. A gelatinous material is simultaneously secreted into the ovarian lumen by a single row of specialized cells that line the ovary wall. Eggs detach from peduncles and ovulate into the gelatinous material.
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  • 32
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    Environmental biology of fishes 37 (1993), S. 329-335 
    ISSN: 1573-5133
    Keywords: Diadromy ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Diadromy in its three forms (anadromy, catadromy and amphidromy) necessarily involves fish spending part of their lives in the sea. It is not uncommon contention that diadromous fish have a recent marine ancestry and that they are in the process of moving from a marine to a freshwater lifestyle. However, analysis of the distribution of diadromy in fishes suggests that, for most species, it is an ancient life history style though, for a few, a recent marine ancestry seems plausible. In general, there is no reason to consider diadromy anything but a stable and successful life history style, and no reason to regard it as transitional between marine and freshwater habitats.
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