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  • Springer  (151,456)
  • American Institute of Physics  (24,769)
  • 2010-2014  (116,946)
  • 1985-1989  (59,279)
  • 1940-1944
  • 2013  (116,946)
  • 1986  (59,279)
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  • 2010-2014  (116,946)
  • 1985-1989  (59,279)
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  • 1
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    In:  Springer atmospheric sciences
    Publication Date: 2020-02-12
    Type: info:eu-repo/semantics/book
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  • 2
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    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 3
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    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 4
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    In:  EPIC3Earth System Science: Bridging the Gaps between Disciplines Perspectives from a Multi-disciplinary Helmholtz Research School, SpringerBriefs in Earth System Science, Heidelberg, Springer, 138 p., pp. 42-45, ISBN: ISBN 978-3-642-32234
    Publication Date: 2019-08-16
    Repository Name: EPIC Alfred Wegener Institut
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  • 5
    Publication Date: 2017-01-16
    Description: Early life stages of marine crustaceans respond sensitively to elevated seawater PCO2. However, the underlying physiological mechanisms have not been studied well. We therefore investigated the effects of elevated seawater PCO2 on oxygen consumption, dry weight, elemental composition, median developmental time (MDT) and mortality in zoea I larvae of the spider crab Hyas araneus (Svalbard 79°N/11°E; collection, May 2009; hatch, December 2009). At the time of moulting, oxygen consumption rate had reached a steady state level under control conditions. In contrast, elevated seawater PCO2 caused the metabolic rate to rise continuously leading to a maximum 1.5-fold increase beyond control level a few days before moulting into the second stage (zoea II), followed by a pronounced decrease. Dry weight of larvae reared under high CO2 conditions was lower than in control larvae at the beginning of the moult cycle, yet this difference had disappeared at the time of moulting. MDT of zoea I varied between 45 ± 1 days under control conditions and 42 ± 2 days under the highest seawater CO2 concentration. The present study indicates that larval development under elevated seawater PCO2 levels results in higher metabolic costs during premoulting events in zoea I. However, H. araneus zoea I larvae seem to be able to compensate for higher metabolic costs as larval MDT and survival was not affected by elevated PCO2 levels.
    Repository Name: EPIC Alfred Wegener Institut
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  • 6
    Publication Date: 2017-04-04
    Description: A temporary seismic network composed of 11 stations was installed in the city of Potenza (Southern Italy) to record local and regional seismicity within the context of a national project funded by the Italian Department of Civil Protection (DPC). Some stations were moved after a certain time in order to increase the number of measurement points, leading to a total of 14 sites within the city by the end of the experiment. Recordings from 26 local earthquakes (Ml 2.2−3.8 ) were analyzed to compute the site responses at the 14 sites by applying both reference and non-reference site techniques. Furthermore, the Spectral Intensity (SI) for each local earthquake, as well as their ratios with respect to the values obtained at a reference site, were also calculated. In addition, a field survey of 233 single station noise measurements within the city was carried out to increase the information available at localities different from the 14 monitoring sites. By using the results of the correlation analysis between the horizontal-to-vertical spectral ratios computed from noise recordings (NHV) at the 14 selected sites and those derived by the single station noise measurements within the town as a proxy, the spectral intensity correction factors for site amplification obtained from earthquake analysis were extended to the entire city area. This procedure allowed us to provide a microzonation map of the urban area that can be directly used when calculating risk scenarios for civil defence purposes. The amplification factors estimated following this approach show values increasing along the main valley toward east where the detrital and alluvial complexes reach their maximum thickness.
    Description: Published
    Description: 493-516
    Description: 4.1. Metodologie sismologiche per l'ingegneria sismica
    Description: JCR Journal
    Description: restricted
    Keywords: site effect ; seismic noise ; spectral intensity ; correlation ; 04. Solid Earth::04.06. Seismology::04.06.04. Ground motion
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 7
    Publication Date: 2017-04-04
    Description: We present results of a multi-temporal analysis of airborne LiDAR data collected between 2006 and 2010 on the 3 km long active Montaguto landslide (Italy). Digital Terrain Models are constructed from data acquired on May 2006, July 2009, April 2010 and June 2010. The spatial distribution of selected morphometric parameters and the statistical analysis of the temporal variations of such parameters allow us to reconstruct the evolution of the landslide. We recognize zones of uplift and subsidence, estimate the volumes of removed or accumulated material, and determine the average rate of vertical and horizontal displacement. We also map the deformations structures and provide new insights on the sliding mechanisms. Zones in which the topographic features change due to handling/removal work are also analyzed. The approach proposed here provides new insight on the use of airborne LiDAR in the surveillance strategies of landslides and other gravity-controlled processes.
    Description: Published
    Description: 147-151
    Description: 1.10. TTC - Telerilevamento
    Description: 5.5. TTC - Sistema Informativo Territoriale
    Description: restricted
    Keywords: LiDAR ; Multi-temporal analysis ; Gravity processes ; 04. Solid Earth::04.04. Geology::04.04.03. Geomorphology ; 05. General::05.08. Risk::05.08.01. Environmental risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 8
    Publication Date: 2017-04-03
    Description: The Salina, Lipari, and Vulcano volcanic ridge and the surrounding sea sectors (Aeolian Archipelago, Southern Tyrrhenian Sea, Italy) are characterized by vents responsible for a recent (〈40 ka—1889/1890 AD) effusive and explosive subareal activity and repeated, 56 to 7 ka in age, submarine explosive eruptions from source areas located between Lipari and Vulcano. A spectral depth estimation of the magnetic bottom using a fractal method on aeromagnetic data from Vulcano, Lipari, and Salina volcanic ridge allows us to constrain the Curie isotherm depth. The elevated portion of the isotherm is between 2 and 3 km below Salina and Vulcano and about 1 km below Lipari. The Curie depth results in the context of other geological and geophysical evidence suggest that the rise of the Curie isotherm is mainly due to the occurrence of shallow heat sources such as magma ponds and associated hydrothermal systems. The short-wavelength magnetic anomaly field reflects magnetic contrasts from highly magnetized volcanic bodies, low-magnetization sediments, and hydrothermally altered rocks. Borehole temperature data verify the Curie temperature derived from the magnetic methods on the island of Vulcano.We conclude that the whole Vulcano, Lipari, and Salina volcanic ridge is active and should be monitored.
    Description: INGV
    Description: Published
    Description: article 710
    Description: 1.10. TTC - Telerilevamento
    Description: 3.3. Geodinamica e struttura dell'interno della Terra
    Description: 3.4. Geomagnetismo
    Description: 3.6. Fisica del vulcanismo
    Description: 5.4. Banche dati di geomagnetismo, aeronomia, clima e ambiente
    Description: JCR Journal
    Description: restricted
    Keywords: Magnetic spectral depths ; Curie temperature ; volcanism ; Aeolian Islands ; 04. Solid Earth::04.01. Earth Interior::04.01.04. Mineral physics and properties of rocks ; 04. Solid Earth::04.02. Exploration geophysics::04.02.04. Magnetic and electrical methods ; 04. Solid Earth::04.05. Geomagnetism::04.05.03. Global and regional models ; 04. Solid Earth::04.05. Geomagnetism::04.05.07. Rock magnetism ; 04. Solid Earth::04.07. Tectonophysics::04.07.02. Geodynamics ; 04. Solid Earth::04.07. Tectonophysics::04.07.03. Heat generation and transport ; 04. Solid Earth::04.08. Volcanology::04.08.05. Volcanic rocks
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 9
    Publication Date: 2020-02-10
    Description: Approximately 1700 Pg of soil carbon (C) are stored in the northern circumpolar permafrost zone, more than twice as much C than in the atmosphere. The overall amount, rate, and form of C released to the atmosphere in a warmer world will influence the strength of the permafrost C feedback to climate change. We used a survey to quantify variability in the perception of the vulnerability of permafrost C to climate change. Experts were asked to provide quantitative estimates of permafrost change in response to four scenarios of warming. For the highest warming scenario (RCP 8.5), experts hypothesized that C release from permafrost zone soils could be 19–45 Pg C by 2040, 162–288 Pg C by 2100, and 381–616 Pg C by 2300 in CO2 equivalent using 100-year CH4 global warming potential (GWP). These values become 50 % larger using 20-year CH4 GWP, with a third to a half of expected climate forcing coming from CH4 even though CH4 was only 2.3 % of the expected C release. Experts projected that two-thirds of this release could be avoided under the lowest warming scenario (RCP 2.6). These results highlight the potential risk from permafrost thaw and serve to frame a hypothesis about the magnitude of this feedback to climate change. However, the level of emissions proposed here are unlikely to overshadow the impact of fossil fuel burning, which will continue to be the main source of C emissions and climate forcing.
    Repository Name: EPIC Alfred Wegener Institut
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  • 10
    Publication Date: 2019-07-16
    Description: Copepods can be associated with different kinds and different numbers of bacteria. This was already shown in the past with culture-dependent microbial methods or microscopy and more recently by using molecular tools. In our present study, we investigated the bacterial community of four frequently occurring copepod species, Acartia sp., Temora longicornis, Centropages sp. and Calanus helgolandicus from Helgoland Roads (North Sea) over a period of two years using DGGE (denaturing gradient gel electrophoresis) and subsequent sequencing of 16S-rDNA fragments. To complement the PCR-DGGE analyses, clone libraries of copepod samples from June 2007 and 208 were generated. Based on the DGGE banding patterns of the two years survey, we found no significant differences between the communities of distinct copepod species, nor did we find any seasonality. Overall, we identified 67 phylotypes (〉 97% similarity) falling into the bacterial phyla of Actinobacteria, Bacteroidetes, Firmicutes and Proteobacteria. The most abundant phylotypes were affiliated to the Alphaproteobacteria. In comparison of PCR-DGGE and clone libraries, phylotypes of the Gammaproteobacteria dominated the clone libraries, whereas Alphaproteobacteria were most abundant in the PCR-DGGE analyses
    Repository Name: EPIC Alfred Wegener Institut
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  • 11
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    In:  EPIC3Biodiversität und Klimawandel: Auswirkungen und Handlungsoptionen für den Naturschutz in Mitteleuropa, Springer, pp. 217-222, ISSN: ISBN 978-3-642-29691-8
    Publication Date: 2018-02-16
    Repository Name: EPIC Alfred Wegener Institut
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  • 12
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    In:  EPIC3Geo-Marine Letters, Springer, 33(5), pp. 381-390, ISSN: 1432-1157
    Publication Date: 2019-07-16
    Description: Sediment thickness was evaluated on the western flank of the East Pacific Rise (EPR) at 45°S, based on high-resolution seismic data gathered during cruise 213/2 of R/V Sonne in 2011. Two zones with distinctly different sediment thickness were identified, separated by a transitional zone bordering a pseudo-fault. Sediment in the more distal zone 2 is almost twice as thick (~120 m) as in zone 1 close to the EPR. This is in contrast to the expected sedimentary column thickening with seafloor age and distance from the spreading axis. The younger of two seismic units detected within the sedimentary column (EPR-2) occurs mainly in the distal zone on crust older than 9 Ma, whereas on younger crust it is present only in small isolated bodies. Both sedimentary units drape the basement. The drape is interpreted to represent particle settling from suspension and a generally low regional primary productivity. The spatial variation in sediment thickness cannot be explained by existing models, and other processes considered in the present case are (1) higher productivity in the western sector of the survey area, where thicker sediments were observed (zone 2), (2) the formation of sediment drifts near basement highs (‘seamount effect’), due to flow of Lower Circumpolar Deep Water affecting sediment deposition, and (3) erosion and/or non-deposition of the younger EPR-2 unit, due to elevated bed shear stresses associated with eddies transferring kinetic energy to the seafloor
    Repository Name: EPIC Alfred Wegener Institut
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  • 13
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    In:  EPIC3Earth System Science: Bridging the Gaps between Disciplines Perspectives from a Multi-disciplinary Helmholtz Research School, Heidelbert, Springer, 138 p., pp. 57-64, ISBN: ISBN 978-3-642-32234
    Publication Date: 2019-08-16
    Repository Name: EPIC Alfred Wegener Institut
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  • 14
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    In:  EPIC3Earth System Science: Bridging the Gaps between Disciplines Perspectives from a Multi-disciplinary Helmholtz Research School, Heidelberg, Springer, 138 p., pp. 64-69, ISBN: ISBN 978-3-642-32234
    Publication Date: 2014-04-15
    Repository Name: EPIC Alfred Wegener Institut
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  • 15
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    In:  EPIC3Earth System Science: Bridging the Gaps between Disciplines Perspectives from a Multi-disciplinary Helmholtz Research School, Heidelberg, Springer, 138 p., pp. 74-79, ISBN: ISBN 978-3-642-32234
    Publication Date: 2014-04-15
    Repository Name: EPIC Alfred Wegener Institut
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  • 16
    Publication Date: 2021-07-19
    Description: The summer water balance of a typical Siberian polygonal tundra catchment is investigated in order to identify the spatial and temporal dynamics of its main hydrological processes. The results show that, besides precipitation and evapotranspiration, lateral flow considerably influences the site-specific hydrological conditions. The prominent microtopography of the polygonal tundra strongly controls lateral flow and storage behaviour of the investigated catchment. Intact rims of low-centred polygons build hydrological barriers, which release storage water later in summer than polygons with degraded rims and troughs above degraded ice wedges. The barrier function of rims is strongly controlled by soil thaw, which opens new subsurface flow paths and increases subsurface hydrological connectivity. Therefore, soil thaw dynamics determine the magnitude and timing of subsurface outflow and the redistribution of storage within the catchment. Hydraulic conductivities in the elevated polygonal rims sharply decrease with the transition from organic to mineral layers. This interface causes a rapid shallow subsurface drainage of rainwater towards the depressed polygon centres and troughs. The re-release of storage water from the centres through deeper and less conductive layers helps maintain a high water table in the surface drainage network of troughs throughout the summer.
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  • 17
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    In:  EPIC3The Mediterranean Sea: Its history and present challenges, The Mediterranean Sea: Its hisory and present challenges, Springer, pp. 499-504
    Publication Date: 2016-02-13
    Repository Name: EPIC Alfred Wegener Institut
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  • 18
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    In:  EPIC3Earth System Science: Bridging the Gaps between Disciplines Perspectives from a Multi-disciplinary Helmholtz Research School, Heidelberg, Springer, 138 p., pp. 70-74, ISBN: ISBN 978-3-642-32234
    Publication Date: 2014-04-15
    Repository Name: EPIC Alfred Wegener Institut
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  • 19
    Publication Date: 2019-07-16
    Description: In contemporary ocean science, modeling systems that integrate understanding of complex multiscale phenomena and utilize efficient numerics are paramount. Many of today's fundamental ocean science questions involve multiple scales and multiple dynamics. A new generation of modeling systems would allow to study such questions quantitatively by being less restrictive dynamically and more efficient numerically than more traditional systems.
    Repository Name: EPIC Alfred Wegener Institut
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  • 20
    Publication Date: 2019-07-16
    Description: In this experimental study, we compared the embryonic respiration rate in air and water of six East African sesarmid species with intertidal, supratidal and arboreal habits, to highlight possible adaptations in embryonic metabolism to their different lifestyles. The embryos of all analysed crabs showed bimodal respiration, but we did not find a trend towards an enhanced embryonic oxygen uptake in air from the intertidal to the arboreal and supratidal species. However, the late-stage embryos of the most land-adapted species, Chiromantes spp., showed an enhanced metabolism when immersed in sea water that we interpreted as an adaptive recovery mechanism to cope with the storage of by-products due to marine-based metabolic pathways during long emersion periods. Thus, we showed that the embryos of land-adapted species, although still strongly water dependent, are well adapted to semi-terrestrial habitats and represent a minor limiting factor for females, which are not restricted in their emersion period by the oxygen requirements of their embryos.
    Repository Name: EPIC Alfred Wegener Institut
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  • 21
    Publication Date: 2017-06-05
    Description: The endemic Antarctic brown macroalga Desmarestia anceps colonizes the subtidal between 5 and 30 m in Potter Cove on King George Island (South Shetland Islands, Antarctica). Experiments were conducted to study photosynthetic activities, antioxidative enzymes and UV tolerance of field-grown individuals with respect to the light histories along different subtidal positions. Individuals collected from the upper (5.5 m) and mid-subtidal (9.0 m) are characterized by high maximum electron transport rates (ETRmax) measured by PAM-fluorometry and high activities of superoxide dismutase (SOD) supported by considerable activities of glutathione reductase. Individuals of this species from the upper subtidal are able to tolerate high irradiances of UV-B radiation because its photosynthetic apparatus is putatively well protected by phlorotannins. In contrast, individuals from lower subtidal positions (13.5 and 15.5 m) showed an opposite trend: lower ETRmax and SOD activities as well as a lower UV tolerance of photosynthesis. Moreover, a non-denaturing polyacrylamide gel electrophoresis (native PAGE) of a partially purified crude extract reveals that D. anceps has probably six isoforms of SOD. These intra-specific patterns imply a high phenotypical plasticity of D. anceps with respect to its photosynthesis and photoprotective mechanisms. Overall, photosynthesis, UV tolerance and antioxidative potential are highly regulated in D. anceps corresponding to the respective light regimes along its natural growth sites.
    Repository Name: EPIC Alfred Wegener Institut
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  • 22
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecosystems 16 (2013): 1550-1564, doi:10.1007/s10021-013-9701-0.
    Description: We examined controls of benthic dinitrogen (N2) fixation and primary production in oligotrophic lakes in Arctic Alaska, Toolik Field Station (Arctic Long-Term Ecological Research Site). Primary production in many oligotrophic lakes is limited by nitrogen (N), and benthic processes are important for whole-lake function. Oligotrophic lakes are increasingly susceptible to low-level, non-point source nutrient inputs, yet the effects on benthic processes are not well understood. This study examines the results from a whole-lake fertilization experiment in which N and P were added at a relatively low level (4 times natural loading) in Redfield ratio to a shallow (3 m) and a deep (20 m) oligotrophic lake. The two lakes showed similar responses to fertilization: benthic primary production and respiration (each 50–150 mg C m−2 day−1) remained the same, and benthic N2 fixation declined by a factor of three- to fourfold by the second year of treatment (from ~0.35 to 0.1 mg N m−2 day−1). This showed that the response of benthic N2 fixation was de-coupled from the nutrient limitation status of benthic primary producers and raised questions about the mechanisms, which were examined in separate laboratory experiments. Bioassay experiments in intact cores also showed no response of benthic primary production to added N and P, but contrasted with the whole-lake experiment in that N2 fixation did not respond to added N, either alone or in conjunction with P. This inconsistency was likely a result of nitrogenase activity of existing N2 fixers during the relative short duration (9 days) of the bioassay experiment. N2 fixation showed a positive saturating response when light was increased in the laboratory, but was not statistically related to ambient light level in the field, leading us to conclude that light limitation of the benthos from increasing water-column production was not important. Thus, increased N availability in the sediments through direct uptake likely caused a reduction in N2 fixation. These results show the capacity of the benthos in oligotrophic systems to buffer the whole-system response to nutrient addition by the apparent ability for significant nutrient uptake and the rapid decline in N2 fixation in response to added nutrients. Reduced benthic N2 fixation may be an early indicator of a eutrophication response of lakes which precedes the transition from benthic to water-column-dominated systems.
    Description: This project was supported by NSF-OPP 9732281, NSF-DEB 9810222, NSF-DEB 0423385, and by a Doctoral Dissertation Improvement Grant NSF-DEB 0206173. Additional funding was provided by the Small Grants Program through the NSF-IGERT Program in Biogeochemistry and Environmental Change at Cornell University.
    Keywords: Benthic ; Nitrogen fixation ; Primary production ; Oligotrophic ; Arctic ; Toolik
    Repository Name: Woods Hole Open Access Server
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  • 23
    Publication Date: 2022-05-25
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Biogeochemistry 114 (2013): 11-23, doi:10.1007/s10533-012-9801-5.
    Description: Human actions have both intentionally and unintentionally altered the global economy of nitrogen (N), with both positive and negative consequences for human health and welfare, the environment and climate change. Here we examine long-term trends in reactive N (Nr) creation and efficiencies of Nr use within the continental US. We estimate that human actions in the US have increased Nr inputs by at least ~5 times compared to pre-industrial conditions. Whereas N2 fixation as a by-product of fossil fuel combustion accounted for ~1/4 of Nr inputs from the 1970s to 2000 (or ~7 Tg N year−1), this value has dropped substantially since then (to 〈5 Tg N year−1), owing to Clean Air Act amendments. As of 2007, national N use efficiency (NUE) of all combined N inputs was equal to ~40 %. This value increases to 55 % when considering intentional N inputs alone, with food, industrial goods, fuel and fiber production accounting for the largest Nr sinks, respectively. We estimate that 66 % of the N lost during the production of goods and services enters the air (as NO x , NH3, N2O and N2), with the remaining 34 % lost to various waterways. These Nr losses contribute to smog formation, acid rain, eutrophication, biodiversity declines and climate change. Hence we argue that an improved national NUE would: (i) benefit the US economy on the production side; (ii) reduce social damage costs; and (iii) help avoid some major climate change risks in the future.
    Description: This work resulted from a workshop supported by NSF Research Coordination Network Awards DEB-0443439 and DEB-1049744 and by the David and Lucille Packard Foundation.
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  • 24
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Conservation Genetics Resources 5 (2013): 561-563, doi:10.1007/s12686-012-9852-x.
    Description: A total of one hundred microsatellites loci were selected from the draft genome of Stylophora pistillata and evaluated in previously characterized samples of Stylophora cf pistillata from the Red Sea. 17 loci were amplified successfully and tested in 24 individuals from samples belonging to a single population from the central region of the Red Sea. The number of alleles ranged from 3 to 15 alleles per locus, while observed heterozygosity ranged from 0.292 to 0.95. Six of these loci showed significant deviations from Hardy–Weinberg equilibrium (HWE) expectations, and 4/136 paired loci comparisons suggested linkage disequilibrium after Bonferroni corrections. After excluding loci with significant HWE deviation and evidence of null alleles, average genetic diversity over loci in the population studied (N = 24, Nloci = 11) was 0.701 ± 0.380. This indicates that these loci can be used effectively to evaluate genetic diversity and undertake population genetics studies in Stylophora sp. populations.
    Description: This research was funded by King Abdullah University of Science and Technology (KAUST), Saudi Arabia.
    Keywords: Stylophora ; Tetra and dinucleotide microsatellites ; Red Sea ; Coral
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  • 25
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Biogeochemistry 115 (2013): 299-315, doi:10.1007/s10533-013-9836-2.
    Description: A series of eight watersheds on the Pacific coast of Panama where conversion of mature lowland wet forest to pastures by artisanal burning provided watershed-scale experimental units with a wide range of forest cover (23, 29, 47, 56, 66, 73, 73, 91, and 92%). We used these watersheds as a landscape-scale experiment to assess effects of degree of deforestation on within-watershed retention and hydrological export of atmospheric inputs of nutrients. Retention was estimated by comparing rainfall nutrient concentrations (volume-weighted to allow for evapotranspiration) to concentrations in freshwater reaches of receiving streams. Retention of rain-derived nutrients in these Panama watersheds averaged 77, 85, 80, and 62% for nitrate, ammonium, dissolved organic N, and phosphate, respectively. Retention of rain-derived inorganic nitrogen, however, depended on watershed cover: retention of nitrate and ammonium in pasture-dominated watersheds was 95 and 98%, while fully forested watersheds retained 65 and 80% of atmospheric nitrate and ammonium inputs. Watershed forest cover did not affect retention of dissolved organic nitrogen and phosphate. Exports from more forested watersheds yielded DIN/P near 16, while pasture-dominated watersheds exported N/P near 2. The differences in magnitude of exports and ratios suggest that deforestation in these Panamanian forests results in exports that affect growth of plants and algae in the receiving stream and estuarine ecosystems. Watershed retention of dissolved inorganic nitrogen calculated from wet plus dry atmospheric deposition varied from 90% in pasture- to 65% in forest-dominated watersheds, respectively. Discharges of DIN to receiving waters from the watersheds therefore rose from 10% of atmospheric inputs for pasture-dominated watersheds, to about 35% of atmospheric inputs for fully forested watersheds. These results from watersheds with no agriculture or urbanization, but different conversion of forest to pasture by burning, show significant, deforestation-dependent retention within tropical watersheds, but also ecologically significant, and deforestation-dependent, exports that are biologically significant because of the paucity of nutrients in receiving tropical stream and coastal waters.
    Description: This work was funded by NSF Grant BIO- 0842413
    Keywords: Tropical watersheds ; Forests ; Pastures ; Nitrogen ; Phosphorus ; Evapotranspiration ; Groundwater
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  • 26
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Reviews in Fish Biology and Fisheries 23 (2013): 317-364, doi:10.1007/s11160-012-9297-z.
    Description: A recent survey lists more than 100 papers utilizing the auditory evoked potential (AEP) recording technique for studying hearing in fishes. More than 95 % of these AEP-studies were published after Kenyon et al. introduced a non-invasive electrophysiological approach in 1998 allowing rapid evaluation of hearing and repeated testing of animals. First, our review compares AEP hearing thresholds to behaviorally gained thresholds. Second, baseline hearing abilities are described and compared in 111 fish species out of 51 families. Following this, studies investigating the functional significance of various accessory hearing structures (Weberian ossicles, swim bladder, otic bladders) by eliminating these morphological structures in various ways are dealt with. Furthermore, studies on the ontogenetic development of hearing are summarized. The AEP-technique was frequently used to study the effects of high sound/noise levels on hearing in particular by measuring the temporary threshold shifts after exposure to various noise types (white noise, pure tones and anthropogenic noises). In addition, the hearing thresholds were determined in the presence of noise (white, ambient, ship noise) in several studies, a phenomenon termed masking. Various ecological (e.g., temperature, cave dwelling), genetic (e.g., albinism), methodical (e.g., ototoxic drugs, threshold criteria, speaker choice) and behavioral (e.g., dominance, reproductive status) factors potentially influencing hearing were investigated. Finally, the technique was successfully utilized to study acoustic communication by comparing hearing curves with sound spectra either under quiet conditions or in the presence of noise, by analyzing the temporal resolution ability of the auditory system and the detection of temporal, spectral and amplitude characteristics of conspecific vocalizations.
    Description: Support from the Austrian Science Fund (FWF grant 22319 to F.L.).
    Keywords: AEP ; Hearing ; Sound pressure level ; Particle acceleration levels ; Thresholds ; Noise ; Ontogeny ; Communication
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marine Biodiversity 43 (2013): 237-241, doi:10.1007/s12526-013-0151-x.
    Description: Despite the ubiquitous role sponges play in reef ecosystem dynamics, little is known about population-level connectivity in these organisms. The general field of population genetics in sponges remains in its infancy. To date, microsatellite markers have only been developed for few sponge species and no sponge population genetics studies using microsatellites have been conducted in the Red Sea. Here, with the use of next-generation sequencing, we characterize 12 novel polymorphic loci for the common reef sponge, Stylissa carteri. The number of alleles per loci ranged between three and eight. Observed heterozygosity frequencies (Ho) ranged from 0.125 to 0.870, whereas expected (He) heterozygosity frequencies ranged from 0.119 to 0.812. Only one locus showed consistent deviations from Hardy-Weinberg equilibrium (HWE) in both populations and two loci consistently showed the possible presence of null alleles. No significant linkage disequilibrium was detected for any pairs of loci. These microsatellites will be of use for numerous ecological studies focused on this common and abundant sponge.
    Description: This work was funded by the King Abdullah University of Science and Technology.
    Keywords: Microsatellites ; Sponges ; Population genetics ; Connectivity ; Stylissa carteri
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    Publication Date: 2022-03-25
    Description: Polygon tundra characterizes large areas of arctic lowlands. The micro-relief pattern within polygons offers differentiated habitats for testate amoeba (testacean)communities. The objective of this study was to relate testacean species distribution within a polygon to the environmental setting. Therefore, testaceans from four cryosol pits dug at different locations within a low-centered polygon were studied in the context of pedological and pedochemical data, while ground temperature and ground moisture were measured over one summer season. The study site is located on the Berelekh River floodplain (Indigirka lowland, East Siberia). The environmental data sets reflect variations along the rim-to-center transect of the polygon and in different horizons of each pit. The testacean species distribution is mainly controlled by the soil moisture regime and pH. Most of the identified testaceans are cosmopolitans; eight species are described from an arctic environment for the first time. Differences in environmental conditions are controlled by the micro-relief of polygon tundra and must be considered in arctic lowland testacean research because they bias species composition and any further (paleo-)ecological interpretation.
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marine Biology 160 (2013): 1773-1787, doi:10.1007/s00227-012-2031-5.
    Description: Ocean acidification is increasingly recognized as a component of global change that could have a wide range of impacts on marine organisms, the ecosystems they live in, and the goods and services they provide humankind. Assessment of these potential socio-economic impacts requires integrated efforts between biologists, chemists, oceanographers, economists and social scientists. But because ocean acidification is a new research area, significant knowledge gaps are preventing economists from estimating its welfare impacts. For instance, economic data on the impact of ocean acidification on significant markets such as fisheries, aquaculture and tourism are very limited (if not non-existent), and non-market valuation studies on this topic are not yet available. Our paper summarizes the current understanding of future OA impacts and sets out what further information is required for economists to assess socio-economic impacts of ocean acidification. Our aim is to provide clear directions for multidisciplinary collaborative research.
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    In:  EPIC3Earth System Science: Bridging the gaps between disciplines—A multi-disciplinary Helmholtz Graduate Research School, Berlin Heidelberg, Springer, 7 p., pp. 83-89, ISBN: 978-3-642-32235-8
    Publication Date: 2023-06-21
    Description: Geophysical data acquired along the Antarctic passive margins constrain the structure and geometry of the deformed continental crust. Crustal thickness estimates range between 7 and 50 km and the Antarctic continent–ocean transition zone (COTZ) extends up to 100–670 km towards the ocean. Continental deformation prior to rifting over a c. 100 million years long time span resulted in crustal stretching factors varying between 1.8 and 5.9. The time span of deformation was sufficiently large and the rifting velocity low enough to extend the margin by up to 300–400 km. Crustal thinning generates a significant subsidence and shallow water passages might already have developed during the rifting phase along the margin. Accounting for accurate continental margin deformation has also consequences for plate-tectonic reconstructions.
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    In:  EPIC3Earth system science: bridging the gap between disciplines, Earth system science: bridging the gap between disciplines, Heidelberg, Springer, 7 p., pp. 97-103, ISBN: 978-3-642-32234-1
    Publication Date: 2023-06-21
    Description: Information about past environmental conditions is preserved in the elemental signature of biogenic marine carbonates. Thus, trace element to calcium ratios (Me/Ca) of biogenic calcium carbonates, such as bivalve shells, are often used to reconstruct past environmental conditions at the time of carbonate formation (Foster et al., 2008). In this study, we examine the suitability of the long-lived (〉 400 years) bivalve Arctica islandica as a high-resolution bioarchive by measuring Me/Ca ratios in the shell carbonate. Pb/Ca concentrations in A. islandica shells reflect anthropogenic gasoline lead consumption and further provide a centennial record of lead pollution for the collection site off the coast of Virginia, USA. With A. islandica shells from the North Sea we test the hypothesis that Ba/Ca and Mn/Ca ratios are indicators of the diatom abundance. Our results indicate that statistically both ratios correlate well with the diatom abundance, and yet, on a year-to-year base, there is no consistent reflection of diatom abundance patterns in the Ba/Ca and Mn/Ca annual profiles. These findings indicate that primary production affects Ba/Ca and Mn/Ca shell ratios, though we suggest that both elements are coupled to primary production through different processes and are affected by further, yet unknown processes.
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    In:  EPIC3Earth System Science: Bridging the Gaps between Disciplines Perspectives from a Multi-disciplinary Helmholtz Research School, Heidelbert, Springer, 138 p., pp. 1-8, ISBN: 978-3-642-32234-1
    Publication Date: 2023-06-21
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    In:  EPIC3Earth System Science: Bridging the Gaps between Disciplines Perspectives from a Multi-disciplinary Helmholtz Research School, Heidelberg, Springer, 138 p., pp. 1-3, ISBN: 978-3-642-32234-1
    Publication Date: 2023-06-21
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    In:  EPIC3Earth System Modelling - Volume 6: ESM Data Archives in the Times of the Grid, Springer Briefs in Earth System Sciences, Berlin, Heidelberg, Springer, pp. 49-60, ISBN: 978-3-642-37243-8
    Publication Date: 2023-06-21
    Description: Grid technology can help scientists to overcome problems with the Data Deluge in climate research, as it facilitates large scale data sharing and reuse of data. Worldwide there are different initiatives to facilitate data handling for scientific work and to built up collaborational working environments with interinstitutional data access.
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    In:  EPIC3Earth System Science: Bridging the Gaps between Disciplines. Perspectives from a Multi-disciplinary Helmholtz Graduate Research School, Earth System Science: Bridging the Gaps between Disciplines. Perspectives from a Multi-disciplinary Helmholtz Graduate Research School, Heidleberg, Springer, 4 p., pp. 38-41, ISBN: 978-3-642-32234-1
    Publication Date: 2023-06-21
    Description: Growth of phytoplankton in the Southern Ocean (SO) is largely limited by insufficient concentrations of the micronutrient iron, so that despite the large macronutrient reservoir, the SO is considered a High Nutrient Low Chlorophyll region. Therefore, phytoplankton growth is enhanced where exogenous iron is introduced to the system, for example downstream from islands. These confined regions sustain very rich ecosystems and are hot spots for atmospheric carbon dioxide drawdown. In this study, a combination of satellite derived measurements and model simulations are used to investigate the biological and physical environmental disturbances of the island of South Georgia (37°W, 54°S), which is located in the southwestern part of the Atlantic sector of the SO. We show not only that the island shelf is an important source of dissolved iron to the system, but also that the characteristic surface circulation patterns found downstream of the island play an important role in maintaining the shape and distribution of the developing phytoplankton bloom.
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    Bulletin of mathematical biology 48 (1986), S. 29-57 
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    Notes: Abstract Approximate equations for epithelial solute and water transport have been combined with the relations of mass conservation to yield a single differential equation representing volume flow along the proximal tubule. This flow equation is first order, quasilinear and may be integrated directly. For the steady state, the result is an implicit relation between volume flow and distance along the tubule. For two time-dependent problems (step change of tubule inlet velocity or osmolality) the trajectories (distance as a function of transit time) of a fluid element starting at the inlet are obtained. Differentiation of the steady-state relation with respect to the inlet velocity yields a first-order differential equation relating inlet and outlet velocity. This equation is considered in detail, particularly with regard to the influence of solute-linked water reabsorption. Model calculations with parameters representing rat proximal tubule indicate that it will be difficult to discern coupled water flux in this epithelium from only outlet and inlet flows. Calculations using lower transport rates and lower permeabilities suggest that this equation may be useful in quantifying coupled water flow in proximal tubules from other species.
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    Bulletin of mathematical biology 48 (1986), S. 105-105 
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    Bulletin of mathematical biology 48 (1986), S. I 
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    Bulletin of mathematical biology 48 (1986), S. 97-103 
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    Notes: Abstract The branching characteristic of the arterial system is such that blood pressure pulses propagate with minimum loss. This characteristic depends on the geometric and elastic properties of branching vessels. In the current investigation, mathematical relations of branching geometry and elastic properties are formulated and their relative contributions to pulse reflection at an arterial junction are analyzed. Results show that alteration of pulse transmission through the junction is more significantly affected by changes in branching vessel radii and wall thickness than by corresponding percentage changes in vessel wall elastic moduli.
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    Bulletin of mathematical biology 48 (1986), S. 125-136 
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    Notes: Abstract Galerkin's finite element-Laplace transform technique (GAFELTTE) has been used to study transient temperature distribution in human skin and subcutaneous tissues. This study incorporates heat conduction, heat carried by perfusion of blood in the capillary beds and metabolic heat generation in the tissues. Different values of various quantities have been considered in all three parts, namely epidermis, dermis and subcutaneous tissues, depending on physiological considerations. The GAFELTTE provides interface temperatures for a wide range of the values of skin surface temperatures. These values have been used to obtain temperature profiles in the region considered. Steady-state temperature distribution has been deduced from the solution obtained by GAFELTTE and has been compared with the results obtained by using different methods.
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    Bulletin of mathematical biology 48 (1986), S. 137-148 
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    Notes: Abstract Necessary and sufficient conditions are given for three equilibria to occur in a predatorprey model and conditions are given for two of these to be stable. The existence of two stable equilibria requires predator intraspecific competition for either space or food, and the lower the prey growth rate the stronger this predator self-regulation must be. A prey growth rate that is skewed to the right, the ability of a few predators to survive at low prey densities, and predators with high searching effectiveness, long handling times, and large maximum per capita rate of increase all make two stable equilibria more likely.
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    Bulletin of mathematical biology 48 (1986), S. 107-124 
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    Notes: Abstract Drawing evidence from a variety of cardiovascular studies on the heart rate in homeothermic animals, the author establishes the following thesis. The servocontrol (i.e. the autonomic and reflex control) by the medulla oblongata of the heart (rate) is a negative feedback dynamic which is isomorphic (i.e. ‘diffeomorphic’) to the dyamic underlying the heat rate control in those animals (cf. Kuyk,Bull. math. Biol. 46, 81–102, 1984). In fact, unlike in the heat rate case, the qualitative evidence supporting this thesis can not be fully complemented by quantitative data stemming from experiments, because of a lack of pertinent experiments—which, indeed, should measuresimultaneously the heart rate state parameter and thefour control parameters at the input side of the medulla. The results of some of the existing experiments on animal preparations can nevertheless be adduced to recognize that this dynamic can be graphed by the five-dimensional butterfly catastrophe type. The theory leads to new ways of looking at experiments in the field and/or setting up such experiments in the future.
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    Notes: Abstract A model based upon minimization of surface energy is proposed as an explanation for compaction and internalization of cells during mammalian embryo development. The model is used to simulate and graphically display these phenomena on a computer.
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    Bulletin of mathematical biology 48 (1986), S. 197-211 
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    Notes: Abstract This paper describes a growth model for binary topological trees. The model defines the branching probability of all segments in the tree. The branching probability of a segment is formulated as a function of two variables, one indicating its type (intermediate or terminal), the other representing its order, i.e. the topological distance to the root segment. The function is determined by two parameters, namely the ratio of branching probabilities of intermediate and terminal segments and the strength of the order dependency, implemented in an exponential form. Expressions are derived for the calculation of symmetry properties of the partitions and it is indicated which part of the parameter domain results in predominantly symmetrical trees.
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    Bulletin of mathematical biology 48 (1986), S. 213-228 
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    Notes: Abstract The problem of cellular differentiation and consequent pattern generation during embryonic development has been mathematically investigated with the help of a reaction-diffusion model. It is by now a well-recognized fact that diffusion of micromolecules (through intercellular gap junctions), which is dependent on the spatial parameter (r), serve the purpose of ‘positional information’ for differentiation. Based on this principle the present model has been constructed by coupling the Goodwin-type equations for RNA and protein synthesis with the diffusion process. The homogeneous Goodwin system can exhibit stable periodic solution if the value of the cooperativity as measured by the Hill coefficient (ρ) is greater than 8, which is not biologically realistic. In the present work it has been observed that inclusion of a negative cross-diffusion can drive the system into local instability for any value of ρ and thus a time-periodic spatial solution is possible around the unstable local equilibrium, eventually leading to a definite pattern formation. Inclusion of a negative cross-diffusion thus makes the system biologically realistic. The cross-diffusion can also give rise to a stationary wave-like dissipative structure.
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    Bulletin of mathematical biology 48 (1986), S. I 
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    Notes: Abstract A nes software system is described for building simulation programs on micro- and minicomputers. Model equations are written as C subroutines, compiled and linked to the SCoP package to produce a menu-driven, interactive program. The system maintains a database of names, values, and units for all model parameters and variables. Run-time options include several methods for interactive parameter modification and both graphic and tabular outputs, with output values presented as they are calculated. Simulation output values can be compared with experimental data graphically and a companion program SCoPFit is provided for formal optimization of parameter values.
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    Bulletin of mathematical biology 48 (1986), S. 455-468 
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    Notes: Abstract We consider the existence and global stability of aq-member equilibrium (1≤q≤n) in partially closed food-chains of lengthn having an abiotic component as resource. We observe that such existence demands bounds of resource supply rate and these bounds are weighted sums of interaction coefficients. Particular results of global sector-stability of partially feasible equilibria of simple food-chains obeying Lotka-Volterra dynamics are shown. Lastly the elasticity of such food-chains when a new species is introduced at the highest trophic level is investigated.
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    Bulletin of mathematical biology 48 (1986), S. 485-492 
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    Notes: Abstract Criteria are established for three classes of models of single-species dynamics with a single discrete delay to have a globally asymptotically stable positive equilibrium independent of the length of delay.
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    Bulletin of mathematical biology 48 (1986), S. 493-508 
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    Notes: Abstract The main concern of this paper is with survival or extinction of predators in models of predator-prey systems exhibiting group defence of the prey. It is shown that if there is no mutual interference among predators, enrichment could result in their extinction. However, if there is mutual interference, the predator population survives (at least deterministically).
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    Bulletin of mathematical biology 48 (1986), S. 509-523 
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    Notes: Abstract In this paper a general class of semi-Markov compartmental systems is studied. Two models for different input processes are analysed. Attention has been paid to the recurrence times associated with each compartment and to the distribution of the number of particles in each compartment. As an example, a three-compartment system is discussed to study the movement between three health states of patients with chronic diseases.
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    Bulletin of mathematical biology 48 (1986), S. 569-583 
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    Notes: Abstract A strategy is presented for searching the gene and protein sequence data banks which combines the use of two previously described algorthms. The implementation of this strategy is thoroughly evaluated with respect to sensitivity, specificity and speed. The establishment of standard benchmarks for comparing programs that rearch the sequence data banks for homology is proposed.
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    Bulletin of mathematical biology 48 (1986), S. 545-567 
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    Notes: Abstract During functional linkage, ligand receptors are coupled to other receptors and to the cell's metabolic-transport apparatus. The linkage guides the cellular processing of matter, energy and information. Previous conceptions of functional linkage have used the ideas of classical physics appropriate to macroscopic objects. This study presents an initial quantum mechanical model of functional linkage in the case of ligands moving through lipid bilayers and hydrophilic transmembrane channels (‘pores’) of molecular dimensions. On the basis of permeability data, energy surfaces consisting of piecewise-constant potential regions are used to model the lipid bilayers and transmembrane channels. The centre-of-mass wavefunction for a ligand on such energy surfaces is analysed and the permeability coefficients calculated from the wavefunction's transmission characteristics. It is found that quasi-bound states in the several ligand-binding regions of a bilayer or pore system can functionally link to facilitate the passage of the molecule across the permeability barrier. Appearance of the linkage is a sensitive function of the ligand's energy. If the centre-of-mass energies are distributed as in a thermalized fluid, the flux via the quantum functional linkage can equal or exceed that of a classical flux for proton transport through rigid pores in which the intrasite barriers are relatively high (0.25–1 eV) and narrow (0.1–1 Å). The functional linkage plays a less important role in bilayer (rather than pore) energy surfaces and at higher molecular weights. If the ligand-receptor interaction is accompanied by energy transfer to or from ligands, the flux via the quantum functional linkage can equal or exceed the classically expected flux at all relevant ligand molecular weights. These findings are discussed in relation to earlier work and the limitations of the model emphasized.
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    Bulletin of mathematical biology 48 (1986), S. 617-632 
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    Notes: Abstract A new measure of subalignment similarity is introduced. Specifically, similaritys(l,c) is defined as the logarithm to the basep of the probability of findingc or fewer mismatches in a subalignment of lengthl, wherep is the probability of a match. Previous algorithms can not use this measure to find locally optimal subalignments because, unlike Needleman-Wunsch and Sellers similarities, this measure is nonlinear. A new pattern recognition algorithm is described for finding all locally optimal subalignments of two nucleotide sequences. The DD algorithm can uses(l, c) or any other reasonable similarity function to assess the relative interest of subalignments. The DD algorithm searches only the diagonal graph, which lacks insertions and deletions. This search strategy greatly decreases the computation time and does not require an arbitrary choice of gap cost. The paths of the resulting DD graph usually draw attention to likely locations for insertions and deletions. A heuristic formula is derived for estimating significance levels fors(l, c) in the context of the lengths of the two aligned sequences. The DD algorithm has been used to find interesting subalignments between the nucleotide sequences for human and murine interleukin 2.
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    Bulletin of mathematical biology 48 (1986), S. 633-660 
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    Notes: Abstract Nonlinear similarity functions are often better than linear functions at distinguishing interesting subalignments from those due to chance. Nonlinear similarity functions useful for comparing biological sequences are developed. Several new algorithms are presented for finding locally optimal subalignments of two sequences. Unlike previous algorithms, they may use any reasonable similarity function as a selection criterion. Among these algorithms are VV-1, which finds all and only the locally optimal subalignments of two sequences, and CC-1, which finds all and only the weakly locally optimal subalignments of two sequences. The VV-1 algorithm is slow and interesting only for theoretical reasons. In contrast, the CC-1 algorithm has average time complexityO(MN) when used to find only very good subalignments.
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    Bulletin of mathematical biology 48 (1986), S. 701-703 
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    Bulletin of mathematical biology 48 (1986), S. 681-699 
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    Notes: Abstract A resource-based competition model of two consumer species and one resource species is formulated in the form of a Lotka-Volterra system. The competition involves both exploitation and interference. By a method of asymptotic estimates, sufficient conditions are derived for the three species system to converge ast→∞ to an equilibrium point with all three species present; a generalization of the result forn≥2 and single resource species is indicated. The strong form of equilibrium perisistence of the three species consumer-resource system is achieved by the ability of each of the consumer species to exploit the resource and interfere with others in such a way which will avoid exclusion by the other.
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    Circuits, systems and signal processing 5 (1986), S. 3-36 
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    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract This paper is a brief historical review of linear singular systems, followed by a survey of results on their solution and properties. The frequency domain and time domain approaches are discussed together to sketch an overall picture of the current status of the theory.
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    Bulletin of mathematical biology 48 (1986), S. 59-75 
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    Notes: Abstract An understanding of the comparative statics of biological communities is important both as a means of explaining the long-term effects of changes in environmental conditions, and as a framework for viewing community time trajectories. A general formulation of community dynamics is presented here which, given full information about a particular community's dynamic behavior, describes the impact of a change in environmental conditions on the community steady state. However, since such full information is often lacking in studies of biological communities, various approaches to partial information analysis of comparative statics are presented and compared, including a generalized protocol for isocline analysis. The suggested isocline protocol is shown to be a useful tool for both full and partial information analyses, as well as for both general and partial equilibrium studies.
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    Bulletin of mathematical biology 48 (1986), S. 77-86 
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    Notes: Abstract Fujita's diagrams in phyllotaxis, showing the frequencies of divergence angles as a function of these angles for low phyllotactic patterns such as (2, 1) and (3, 2), which are approximately normal curves centered at the limitdivergence angle of 137.51°, are shown to be puzzling when compared to results and observations in the field. An analysis of these diagrams is proposed, in the context of Fujita's methodology, of data from other sources, of a mathematical theorem on lattices, and of the contact pressure theory of phyllotaxis.
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    Bulletin of mathematical biology 48 (1986), S. 87-95 
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    Notes: Abstract It is shown that a representative Fisher-Wright model withn(≥3) diallelic loci admits a necessary condition for existence of a time-independent steady-state probability distribution. This necessary condition states that a global integral depending on the phenotype fitness functions of natural selection must be larger than a certain quantity depending on the parameters associated with genetic drift.
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    Bulletin of mathematical biology 48 (1986), S. 149-166 
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    Notes: Abstract Equations for the time-dependent concentrations of all species involved in the general mechanism of human plasminogen activation proposed by Wohlet al. (J. biol. Chem. 255, 2005–2013, 1980) have been derived. These equations are valid for the whole course of the reaction: for both the transient phase and the steady state. In addition, we compare our results with the ones obtained by the above-mentioned authors for the steady state assuming rapid equilibrium conditions. Finally, we propose a method for the determination of all velocity constants.
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    Bulletin of mathematical biology 48 (1986), S. 189-195 
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    Notes: Abstract A special class of interval graphs is defined and characterized, and an algorithm is given for their construction. These graphs are motivated by an important representation of DNA called restriction maps by molecular biologists. Circular restriction maps are easily included.
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    Bulletin of mathematical biology 48 (1986), S. 253-278 
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    Notes: Abstract Over the past 25 years stepwise improvement in the cure of disseminated cancers has been good, fair or very poor depending on the particular cancer one is discussing. “Cancer chemotherapy provides variably effective treatment for the majority of forms of human cancer and curative treatment for some 12 categories.” We have been slow to gain and learn how to apply quantitative information on the biologic phenomena that underlie the responsiveness, or lack of responsiveness, of many different cancers to single drugs and combinations of drugs delivered in different ways. I am of the opinion that continuing development and integration of rational biomathematical models based on principles already identified, and testing them for compatibility with much already available experimental and clinical data, will lead to models that will help in planning more effective treatment regimens for cancers now classified as moderately refractory or very refractory to chemotherapy. Some of the critical variables are considered briefly. My advice, for what it is worth, is “try to be sure that the biologic concepts that you use in modeling are almost as good as the arithmetic.”
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    Bulletin of mathematical biology 48 (1986), S. 309-322 
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    Notes: Abstract A discussion of the bases of physiological pharmacokinetics is followed by a brief review of the fundamental mass balance equations of the models. Some examples are outlined, together with a listing of published reviews which give many more references and detailed examples. Finally, some thoughts on future research directions are presented.
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    Bulletin of mathematical biology 48 (1986), S. 323-336 
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    Notes: Abstract The use of stochastic simulation languages in cell kinetics research is discussed. Two special purpose simulation languages; CELLSIM and CELLGROW are described and example problems are presented.
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    Bulletin of mathematical biology 48 (1986), S. 293-307 
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    Notes: Abstract Mathematical models predicting tissue doses of chemical toxicants can be either highly complex or simple, depending upon the end results needed. As an example of a highly complex mathematical model, the Miller Model of the distribution of reactive gases in human and animal lungs is described. The Miller Model accounts for the convection, the radial and axial diffusion, and the chemical reactions of gases as an inhaled breath passes down the airways. The geometry and physiology of human and animal lungs are used to calculate the convection and diffusion likely in each generation or bifurcating series of airways commencing with the trachea and extending 24 generations in humans. The chemical reactivity of ozone, an air pollutant, is accounted for by simulating second-order chemical reactions with the fluid lining materials of the lung and tissue biological molecules. The flux of ozone into three compartments (pulmonary tissue, overlying liquid layer and capillary blood) in each generation of the lung is calculated to provide molecular doses of ozone reaching each region of the lung. These results of calculated molecular dose are then used to construct dose-response curves for a variety of biological endpoints. A much simpler model is also described which recognizes the saturable or Michaelis-Menten type of kinetics controlling the removal of nickelous ion (nickel) from the lung. This model is used to calculate the chronic lung burden of the human lung for occupational, environmental and cigarette smoking exposure scenarios. In both the complex Miller Model and the simpler nickel lung burden model, the results can be used to calculate molecular doses at the potential site of action of these environmental chemicals and to unify a wide variety of studies. The predictions made are more likely to be valid since multiple investigators using a variety of animal species have participated in generation of the primary data. As a methodology, mathematical modeling based on physiological, physicochemical and anatomical principles provides a means of eliminating non-scientific considerations from the important process of regulating and recognizing toxic or cancer causing chemicals in the human environment.
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    Bulletin of mathematical biology 48 (1986), S. 337-351 
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    Notes: Abstract This paper presents a brief review of applications of kinetic simulation of multi-enzyme networks to the study of antimetabolite drugs used as anticancer agents. Kinetic models consist of systems of nonlinear differential equations that describe changes in concentrations of cellular metabolites with respect to time. Such models have been used to predict the effect of changes in activity of enzymes, or changes in enzyme kinetic parameters, on sensitivity to inhibition. Kinetic simulation has provided insight into several aspects of the biochemical pharmacology of antimetabolites, including drug sensitivity and resistance, and drug-drug interactions. Two specific studies are described in detail. The first concerns the importance of the ratio of competing enzymes in determining the selectivity of inhibitors of one of the competing enzymes, studied by a simple model. The second case study examines the effect of alternative biosynthetic pathways, thede novo and salvage pathways of pyrimidine nucleotide biosynthesis, on the selectivity of antipyrimidine drugs, as studied by a detailed model of 27 reactions of pyrimidine metabolism.
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    Bulletin of mathematical biology 48 (1986), S. 381-404 
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    Notes: Abstract General (deterministic) ordinary differential equations for the representation of cancer growth are presented when the growth is perturbed due to the action of a chemotherapeutic agent. The Verhulst-Pearl equation is introduced as a particular example of a growth equation applicable to human tumors. An optimal control problem with general performance criterion and state equation is formulated and shown to possess a novel feedback control relationship. This relationship is used in two continuous drug delivery problems involving the Verhulst-Pearl equation.
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    Bulletin of mathematical biology 48 (1986), S. 353-380 
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    Notes: Abstract Complex networks of biological processes are analogous to electrical circuits. For each step in a biological or electrical network, flow is dependent on the driving force and the conductivity of the step. The relationship between biological flows and their driving forces can therefore be expressed as relationships between analogous currents and voltages. The time dependence of approach to equilibrium or a steady state is determined by the rates of depletion of material in various compartments. Electrical capacitance is therefore analogous to compartment volume. Once these generalized concepts of flow, force and capacitance are recognized, it becomes clear that computer programs designed for analysis of electrical circuits may be used for simulation of biological networks. A set of simple mathematical descriptions of the individual steps and a diagram showing how the steps are arranged with respect to each other are all that is necessary to perform a simulation; there is no need for computer programming skills or differential equations. The use of SPICE2 for simulation of the cellular and plasma pharmacokinetics of cytosine arabinoside (araC) is described as an example. A network model is developed which considers cellular pharmacokinetics (membrane transport, intracellular phosphorylation and dephosphorylation), and plasma pharmacokinetics following infusions of araC.
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    Bulletin of mathematical biology 48 (1986), S. 405-415 
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    Notes: Abstract Developments in computer hardware and software are making significant improvements in the availability of simulation for biomedical researchers. This paper reviews past and present techniques for digital computer simulation and looks at improvements likely in the near future. In the area of hardware, personal computers are making computing and simulation more widely available and at the same time, supercomputers and special-purpose numerical processors are making it possible to solve larger problems. Software developments for simulation are reducing the time, effort and special skills required to produce a simulation program. A new hierarchical linker is proposed to make it easy to synthesize a global model by combining existing submodels. In the more distant future, computer models may be constructed graphically and with the assistance of intelligent programs capable of analysis and information retrieval.
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    Bulletin of mathematical biology 48 (1986), S. 417-426 
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    Notes: Abstract Modeling is a ubiquitous and often misunderstood enterprise in which data from diverse disciplines are analyzed by techniques from other diverse disciplines in an attempt to confirm or falsify a set of hypotheses about the real world. Guidelines are offered for designing models to match the goals of modeling biological systems. Techniques for the construction and interpretation of models are discussed. The requirements for credibility of models are detailed, and tests are suggested for their validation.
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    Bulletin of mathematical biology 48 (1986), S. 453-453 
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    Bulletin of mathematical biology 48 (1986), S. 443-452 
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    Notes: Abstract Presentations and discussions at the symposium illustrate some general issues in biomedical modeling for cancer research. Given the motivations for modeling and assumptions concerning who should be involved in the modeling process, one can identify some basic needs to be met in supports to modelers. These concern both the models themselves and ways of presenting them to users. In conclusion, some thoughts are offered on economic and educational issues that may affect the infusion of modeling into biomedical research.
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    Bulletin of mathematical biology 48 (1986), S. I 
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    Circuits, systems and signal processing 5 (1986), S. 109-123 
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    Notes: Abstract Certain properties of solutions similar to set invariance, set attractivity, boundedness, BIBO stability, etc. are investigated for the semistate model $$P(t)\dot x = M(t,x)x + D(t,x)u,y = q(t,x,u).$$ For systems considered, it is assumed that the reduction to a normal form of lower order is not possible. Using the direct method of Liapunov, the properties of solutions are investigated without actual knowledge of solutions.
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    Circuits, systems and signal processing 5 (1986), S. 153-169 
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    Notes: Abstract In this paper we extend the results on the multiple time-scale structure for linear autonomous systems of the form $$\dot x = A( \in )x$$ (cf. Coderchet al. [1]) to nonlinear autonomous systems. Our main result is in obtaining conditions under which the linearized system and the nonlinear system around an equilibrium point have the same time-scale structure.
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    Bulletin of mathematical biology 48 (1986), S. 21-27 
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    Notes: Abstract The process of cooperative binding of ligands to DNA has been classified into different modes. An additional mode of cooperative interaction amongst ligands binding at sites on complementary strands has been emphasised. A statistical mechanical method has been applied to obtain an analytical expression for the fraction of nucleotide sites bound. Theoretical Scatchard plots have been drawn and analysed.
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    Bulletin of mathematical biology 48 (1986), S. 1-19 
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    Notes: Abstract Suspensions of chemotactic bacteria develop spatial and temporal structures in response to an initial inhomogeneity in the medium. A theoretical model is presented for the analysis of spatial and temporal evolution of bacterial bands in response to several attractants. Applications of the model to various experimental cases give good agreement between theory and observation. The theoretical analysis provides further insight to the mechanisms governing band formation and band migration.
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    Bulletin of mathematical biology 48 (1986), S. 229-236 
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    Notes: Abstract The theory of maximum principles is applied to a nonlinear differential equation representing a heat conduction model of the human head to obtain accurate analytical upper and lower bounding curves.
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    Bulletin of mathematical biology 48 (1986), S. 237-237 
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    Bulletin of mathematical biology 48 (1986), S. 239-240 
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    Bulletin of mathematical biology 48 (1986), S. 241-251 
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    Notes: Abstract This paper is a general introduction to the field of biomathematical modeling. Biomathematical modeling is divided into three parts: the derivation of models, the fitting of models to data, and the simulation of data from models. This paper focuses on the simulation of data from models. The uses of simulation, the potential users of simulation, and simulation software are described.
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    Bulletin of mathematical biology 48 (1986), S. 279-292 
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    Notes: Abstract A stochastic model for the chemotherapy of experimental tumors is presented. The focus of this model is on the presence of drug-resistant mutants and their influence on eventual treatment outcome. Equations are derived for the joint probability-generating function for the number of chemo-sensitive and chemo-resistant cells. The model is extended to two drugs and it is shown how the model may be used to make deductions regarding the optimum scheduling of therapy.
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    Bulletin of mathematical biology 48 (1986), S. I 
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    Bulletin of mathematical biology 48 (1986), S. 661-680 
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    Notes: Abstract Earlier and some recent ideas about the possible modes of specification of the wiring-in of nervous systems are reviewed in the light of older and several recent experiments, and some new ideas are suggested. It is argued that certain general principles, notably the postulated ‘principle of alternative matching’ (PALMA) and a suggested and related ‘kaleidoscopic effect’ (KALEF), as well as the notion of an ‘extracellular guidance network’ (ECGN), are in good agreement with recent and older findings concerning axonal guidance during neural wiring-in. It seems possible that by means of genetically programmed processes, neurons become systematically combinatorially labelled to such a degree that possibly all neurons areuniquely specified, as regards the combination oftypes of cell labels they make. Yet, there remains considerable freedom as regards the modes of arrangements of cell labels within cell surface membranes and the KALEF permits to overcome apparent difficulties that confronted earlier versions of the cell labelling hypotheses (cf. Edelman,Science 219, 450–457, 1983, for mention of such difficulties). Apart from label specification, neural development seems to depend on trophic factors, which are also essential for the maintenance of the developed nervous system. The systematic programmes for cell labelling, apart from generating all the required neurons, also produces inappropriate neurons and synaptic connections. These are got rid of by systematic cell death and/or atrophy of inappropriate synapses and/or elimination of inappropriate axon collaterals. The resulting neural net seems then very specifically wired-in for each species, apparently without redundant neurons.
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    Bulletin of mathematical biology 48 (1986), S. 469-484 
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    Notes: Abstract A model of a predator-prey interaction, where the prey population consists of three genotypes with random mating and continuous, nonlinear birth and death processes with fertility differences, is proposed. Sufficiency conditions giving the existence of a globally stable equilibrium on one of the coordinate planes are given. This extends results of Freedman and Waltman [J. Math. Biol. 6, 367–374 (1978) andRocky Mountain J. Math. 12, 779–784 (1982)]. In addition, conditions are derived which guarantee the persistence of all components of the populations.
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    Bulletin of mathematical biology 48 (1986), S. 525-543 
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    Notes: Abstract A theoretical study is made of three organ flow models with heterogeneity of capillary transit times. A new parametrization of Rose and Goresky's Model III facilitates in many cases a reduction to Goresky's Model II, accomplished by a special time shift. The shift parameter $$\tau _{c_z } = \tau _{c_m } - t_{APP} /b$$ defined here is critical in this analysis of Model III. A new expression of the series for outflow concentration in Model III is given and proves useful in examining the model as an operator and in relating it to Models I and II. A result on parameter optimization is given: if $$\tau _{c_z } \geqslant 0$$ then Model III cannot fit better than Model II. This is applied to some data from Rose and Goresky [Circulation Res. 39, 541–544 (1976)] and raises a new question about their model. A heart model of Levin and Bassingthwaighte based on regional flow measurement is shown to be a discretized generalization of Model II.
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    Bulletin of mathematical biology 48 (1986), S. 585-601 
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    Notes: Abstract This paper analyses the diffusion effect on stability in Lotka-Volterra systems for a patch-type environment. Applying the extended stability theorem of LaSalle, some classes of patches for which the diffusion does not affect the system's stability are drawn. Further, complicated dynamical behaviours in two-prey, one-predator diffusion models are given when the patch does not belong to the above classes.
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    Bulletin of mathematical biology 48 (1986), S. 603-616 
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    Notes: Abstract When comparing two biological sequences, it is often desirable for a gap to be assigned a cost not directly proportional to its length. If affine gap costs are employed, in other words if opening a gap costsv and each null in the gap costsu, the algorithm of Gotoh (1982,J. molec. Biol. 162, 705) finds the minimum cost of aligning two sequences in orderMN steps. Gotoh's algorithm attempts to find only one from among possibly many optimal (minimum-cost) alignments, but does not always succeed. This paper provides an example for which this part of Gotoh's algorithm fails and describes an algorithm that finds all and only the optimal alignments. This modification of Gotoh's algorithm still requires orderMN steps. A more precise form of path graph than previously used is needed to represent accurately all optimal alignments for affine gap costs.
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    Circuits, systems and signal processing 5 (1986), S. 69-85 
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    Notes: Abstract In this paper we consider derivative feedback in a semistate framework for the problem of stabilizing the neutral root chains for a class of neutral delay-differential equations where the difference operator (orD-operator) is unstable. Recent work has shown that such systems cannot be stabilized by state feedback alone[3], [13], [16]. In addition, we consider the problem of using derivative feedback to eliminate all neutral root chains entirely, thus turning the closed loop system into a retarded delay system. By representing neutral delay-differential systems as semistate systems over a polynomial ring of delay operators, both of the above problems are shown to be reducible to the following question: Given matricesD,B over a commutative ringR, when does there exist a matrixM also overR such thatD+BM isR-unimodular? In the case of commensurable point delays our results are applications of some recent results on the simultaneous stabilization problem [19], and we give a constructive procedure for computing the required feedback law. In the case of noncommensurable delays we give a sufficient condition for the existence of suitable feedback for the above problems.
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    Circuits, systems and signal processing 5 (1986), S. 37-48 
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    Notes: Abstract The concepts of {A,E,R(B)} and restricted {E,A,R(B)} invariance are introduced. The reachable subspace of a descriptor system is shown to be the supremal {A,E,R(B)}invariant subspace contained in the least restricted {E,A,R(B)} subspace of Rn. Algorithms to compute the reachable subspace of a descriptor system $$E\dot x = Ax + Bu$$ in terms ofE,A andB are given. A new proof of the feedback invariance of the reachable subspace is presented.
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    Circuits, systems and signal processing 5 (1986), S. 87-95 
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    Notes: Abstract One-leg methods for general differential-algebraic equations are analyzed. Sufficient stability conditions are formulated for transferable differential-algebraic equations. A natural scaling is proposed to obtain matrices with uniformly bounded condition in the linear systems to be solved.
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    Circuits, systems and signal processing 5 (1986), S. 187-210 
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    Notes: Abstract The concept of smoothing noisy data using appropriate polynomials turns out to be equivalent to the application of suitable nonrecursive digital filters having the following properties: They process the data in such a way that the moments are conserved up to a desired order while the energy of their impulse response is minimum. Flatness constraints of their frequency response at Ω=0 are equivalent to the moment condition. By using orthogonal polynomials, an explicit solution is known from the literature. A second approach which uses a special decomposition also yields closed form solutions. The realization is simplified, especially in the case where a large number of moments is supposed to be conserved.
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    Circuits, systems and signal processing 5 (1986), S. 49-68 
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    Notes: Abstract This paper refers to the problem of designing a linear state feedback dynamic controller for single-input, single-output decoupling of linear, time-invariant, singular systems. Sufficient conditions are established for the state-feedback decoupling problem to have a solution. In the case where the system satisfies these conditions, the class of controller matrices which decouple the system is given. Finally a method is presented for pole-zero placement in the decoupled singular system and a structure is described for the realization of the generalized transfer function matrices.
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    Circuits, systems and signal processing 5 (1986), S. 125-137 
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    Circuits, systems and signal processing 5 (1986), S. 171-183 
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    Notes: Abstract It is shown that the semistate equations can be transformed via a linear transformation into a form which is useful for physical realizations. The result is applied to the example of a semistate described differentiator which is then realized through an op-amp circuit composed of integrators.
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  • 98
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    Electronic Resource
    Springer
    Circuits, systems and signal processing 5 (1986), S. 227-259 
    ISSN: 1531-5878
    Source: Springer Online Journal Archives 1860-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract We formulate and prove a theorem which gives a rigorous theoretical justification for the use of describing functions to predict the existence of limit cycles in a multiple nonlinear feedback system and to predict the stability properties of these limit cycles. Our approach uses the classical sinusoidal-input describing function and the theory of integral manifolds. We demonstrate the applicability of our result by means of two specific examples.
    Type of Medium: Electronic Resource
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  • 99
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    Circuits, systems and signal processing 5 (1986), S. 321-341 
    ISSN: 1531-5878
    Source: Springer Online Journal Archives 1860-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract The design of a continuous-time system suitable for electronic circuit realization for integrated circuit generation of chaotic responses is presented. The system is second order and is based upon an unstable oscillator with state-space trajectories that are fed back into themselves, and stabilized, via the use of binary hysteresis. The chaotic nature of the signals is guaranteed by a theorem of Li and Yorke through the generation of a period-three return map. Experimental results are given that verify the design.
    Type of Medium: Electronic Resource
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  • 100
    Electronic Resource
    Electronic Resource
    Springer
    Circuits, systems and signal processing 5 (1986), S. 261-274 
    ISSN: 1531-5878
    Source: Springer Online Journal Archives 1860-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Abstract We apply some abstract existence results, proved in Sections 1 and 2 of the paper, to some cases of the following problem (P), formally stated as (P) $$\left\{ \begin{gathered} D_t \left( {Mu\left( t \right)} \right) + Lu\left( t \right) = f\left( {t,Ku\left( t \right)} \right) 0〈 t \leqslant \tau \hfill \\ Mu\left( t \right) \to u_0 as t \to 0 + \hfill \\ \end{gathered} \right.$$ whereK,L,M are linear and/is a nonlinear term. The unknown functionu is required to lie in various functional spaces.
    Type of Medium: Electronic Resource
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