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  • Physical Chemistry  (123)
  • Biochemistry  (63)
  • Wiley-Blackwell  (186)
  • American Institute of Physics
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  • 1980-1984  (186)
  • 1960-1964
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  • 1981  (186)
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  • Wiley-Blackwell  (186)
  • American Institute of Physics
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  • 1960-1964
  • 1925-1929
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  • 1
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 2 (1981), S. 58-62 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A simple and very rapid method for the calculation of electrostatic isopotential maps is proposed. The potential is composed of transferable bond fragments. According to chemical evidence, σ-, lone-pair, and π-bond contributions are considered. The computational work is proportional to the first power of the number of bond orbitals; therefore very large systems, such as enzymes or DNA, can be handled also. Transferability of bond orbital characteristics such as polarity, s character, and orientation is discussed. Though the absolute value of the potential is overestimated, trends obtained with STO-3G calculations are reflected correctly.
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  • 2
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    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 2 (1981), S. 87-95 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The carboxylat anion, involved in the structure of numerous compounds of biological interest, participates in a number of intermolecular interactions involving water, cations, and other cellular constituents. A set of ab initio SCF computations have been carried out with an extended polarized basis set on HCOO-, its molecular electrostatic potential, and its interaction with Li+, Na+, K+, and H2O. The results are compared with those of a minimal good quality basis set. An evaluation of the basis set superposition error is made in the two basis as well as that of the contribution of the dispersion energy to the hydration. The analogies and differences in the nucleophilic character of the formate and the phosphate groups are discussed.
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  • 3
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    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 2 (1981), S. 73-82 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The effect of the basis set superposition error (BSSE) on the calculated electronic structure of a molecular stacking complex is analyzed with the counterpoise correction method. The complex between para-hydroxyaniline (PHA) and formamidinium cation (FAM) is calculated ab initio with the STO-3G and Whitman-Hornback minimal bases, and with two split valence basis sets: 4-31G and STO-3G(D). When the counterpoise correction is applied, the charge redistribution in the PHA/FAM complex calculated with all four basis sets suggests that the complex is electrostatic in nature and that the main polarization is from the PHA toward FAM. The FAM cation is polarized away from the intermolecular region, thus causing further increase in the electrostatic interaction. This picture is not evident with the STO-3G related bases if the counterpoise correction is not applied. Thus, the BSSE in the charge redistribution is shown to be particularly large in the STO-3G basis and in the diffuse, split valence, STO-3G(D). Both these basis sets suffer from an inappropriate description of the core region. Where there is an improved description of the electron density in the core region, as in the calculations with the energy-optimized Whitman-Hornback basis and with the 4-31G basis, the counterpoise correction has only a very small effect on the charge redistribution. After the counterpoise correction is applied, the two minimal basis sets yield nearly identical charge redistribution results, as do the two split valence bases. It is therefore suggested that basis sets used in the calculation of molecular complexes might be classifiable according to criteria such as the degree of contraction and the quality of the description of angular polarization. This would help in the comparative evaluation of results obtained with different bases since minimal basis sets (or split valence bases) would become directly identifiable as groups yielding qualitatively similar results.
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  • 4
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    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 2 (1981) 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
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  • 5
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    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 2 (1981), S. 149-156 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The geometry and energy of tetra-tert-butylethylene have been determined by the molecular mechanics method. A twisting of the double bond by 45.5° was found. The ground state of the molecule should be a singlet. The calculated strain energy is higher than those of tri-tert-butylmethane and tetra-iso-propylethylene, but the possibility of synthesis of the compound is not excluded.
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  • 6
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    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 2 (1981) 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
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  • 7
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    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 2 (1981), S. 244-250 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A set of programs has been developed to calculate molecular spin-orbit interaction with Gaussian-type wavefunctions in connection with the popular GAUSSIAN 76 program. The spin-orbit contributions to the fine structure of O2 (X3∑g-), NH (X3∑-), and CH2 (X3B1) are evaluated with the standard STO-3G and 6-31G basis sets; for NH the influence of bond functions added to the latter basis set is also investigated. The results are compared to values previously obtained with other types of basis sets.
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  • 8
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    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 2 (1981), S. 273-277 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A semianalytic method is presented for computing the concentration distribution in enzyme-substrate fast reaction systems. By means of this method, not only can much computation work be saved but a semianalytic expression for the concentration distribution will be obtained. This expression is very useful for analysis and discussion of the kinetic characteristics of this kind of reaction system.
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  • 9
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    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 2 (1981), S. 251-260 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Ab initio SCF and SCF-CI calculations have been performed to investigate substituent effects on ground- and excited-state properties of 4-R-pyrimidines, and to compare these with substituent effects in 2- and 4-R-pyridines, with R including the π donating and σ withdrawing groups CH3, NH2, OH, F, and C2H3 and the σ and π electron-withdrawing groups CHO and CN. Substitution leads to significant changes in the internal angles of the pyrimidine ring, which are independent of the nature of the substituent. The geometry of the pyrimidine ring is more sensitive to substitution in the 4 position than the pyridine ring geometry is to substitution in either the 2 or the 4 position. The isodesmic reaction energies for substituent transfer from the 4 position of pyrimidine to the 2 or 4 position of pyridine indicate that all R groups except CN have a relative stabilizing effect in pyrimidine. The presence of a π donating group leads to an increase in the n→π* transition energy of 4-R-pyrimidines, while the π withdrawing group CN leads to a decrease in the transition energy relative to pyrimidine. Orbital energy differences and virtual excitation energies tend to correlate with n→π* transition energies of 4-R-pyrimidines with saturated R groups, but such correlations are masked by π conjugation, n orbital interaction, and configurational mixing when the unsaturated groups C2H3, CHO, and CN are present. The electronic effects of a π donating group are stronger when the group is bonded to pyrimidine than to pyridine, but those of a π withdrawing group are weaker when the group is bonded to pyrimidine.
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  • 10
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    Journal of Computational Chemistry 2 (1981), S. 376-383 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Quantum chemical calculations of polymers and solids, especially on an ab initio level, represent a large computational task and therefore necessitate efficient computing methods. This is particularly true for the oscillatory integrals appearing in such calculations. For these integrals efficient integration methods based both on the Chebyshev series and the spline representation of the nonoscillatory part of the integrand are considered; they are found far superior compared with more standard integration rules. In two- and three-dimensional systems, directions with maximum oscillatory behavior can be selected along which these new efficient integration techniques can be used advantageously. The ideas are illustrated by Hückel crystal orbital (HCO) bond orders for the polyacetylene chain and the graphite layer. In the latter example, also, a method for the integration of oscillatory integrands with a singularity is given.
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  • 11
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    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 2 (1981), S. 402-409 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A Monte Carlo algorithm, capable of simulating numerically the time and space dependence of chemical concentrations in a reacting system, is presented. This method is used to study the phenomenon of trigger waves in the Oregonator model of the Belousov-Zhabotinskii reaction, including the diffusion of species X and Y in one dimension. The results show that a small disturbance in a homogeneous mixture can grow into a chemical (trigger) wave propagating in space at constant velocity. The dependence of this velocity on several factors is studied, namely, initial concentrations, the diffusion of Y, and the stoichiometry of the autocatalytic step of the model. A comparison of the Monte Carlo results with a previous simulation also is discussed.
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  • 12
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    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 2 (1981), S. 416-421 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Ab initio SCF calculations with the STO-3G basis set have been performed to determine the structure and stability of a 6:1 water:uracil heptamer in which water molecules are hydrogen bonded to uracil at each of the six hydrogen-bonding sites in the uracil molecular plane. The structure of the heptamer describes a stable arrangement of these six water molecules, which are the primary solvent molecules in the first solvation shell, and is suggestive of the arrangement of secondary solvent molecules in that shell in the nonpolar region of the uracil molecular plane. The stabilization energy of the heptamer is 49.6 kcal/mol, or 8.3 kcal/mol per water molecule. The hydrogen bonds between uracil and water are the primary factor in the stabilization of the complex, although water-water interactions and nonadditivity effects are also significant.
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  • 13
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    Journal of Computational Chemistry 2 (1981), S. 422-432 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Ab initio SCF calculations with the STO-3G basis set have been performed to investigate substituent effects on the structures and stabilization energies of water:4-R-pyrimidine complexes, with R including CH3, NH2, OH, F, C2H3, CHO, and CN. Except for the cyclic water:4-aminopyrimidine complex hydrogen bonded at N3, these complexes have open structures stabilized by a nearly linear hydrogen bond formed through a nitrogen lone pair of electrons. When hydrogen bonding occurs at N3, the complexes may have planar or perpendicular conformations depending on the substituent, but when hydrogen bonding occurs at N1, the perpendicular is generally slightly preferred, and there is essentially free rotation of the 4-R-pyrimidine. Primary substituent effects alter the electronic environment at the nitrogens, and tend to make N3 a poorer site for hydrogen bonding than N1, primarily because of a stronger π electron-withdrawing effect at N3. However, the relative stabilities of complexes hydrogen bonded at N1 and N3 are also influenced by secondary substituent effects, which may be significant in stabilizing complexes bonded at N3. Substitutent effects on the structures and stabilization energies of the water:4-R-pyrimidine complexes are similar to substitutent effects in water:2-R-pyridine and water:4-R-pyrimidine complexes are similar to substitutent effects in water:2-R-pyridine and water:4-R-pyridine complexes. Configuration interaction calculations indicate that although absorption of energy by the pyrimidine ring destabilizes the water:4-R-pyrimidine complexes, these may still remain bound in the excited n → π* state. This is in contrast to the fate of open water:2-R-pyridine and water:4-R-pyridine complexes, which dissociate in this state.
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  • 14
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    New York, NY [u.a.] : Wiley-Blackwell
    Journal of Computational Chemistry 2 (1981), S. 460-469 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The conformational behavior of the C-terminal neurotensin pentapeptide, Arg-Pro-Tyr-Ile-Leu OH [NT(9-13)], was investigated using empirical energy calculations. A special aim was to display the specific contribution of each residue to induce conformations able to interact with biological receptors. Restrictions were then introduced in intramolecular interactions involving the Arg side chain and the terminal COOH group. The stablest conformations include in the order of decreasing stability: a distorted helical form for the C-terminal tetrapeptide, a (Pro2-Tyr3) β turn I, an α helix, an extended form, and a (Tyr2-Ile3) β turn III, which are energetically rather close (ΔE 〈 3 kcal/mol). The NT(9-13) peptide appears then as a rather flexible molcule with a noteworthy ability of adaptation to a substrate. Extended forms would be in agreement with a zipper model of interactions with receptors, whereas folded forms involving helices and β, γ turns would support a lock and key model. The specific contribution of side chains, specially those of Tyr and Arg residues as well as the key position of the Pro residue emerge clearly from this study.
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  • 15
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    International Journal of Chemical Kinetics 13 (1981), S. 135-148 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The rate of the cerium (IV) oxidation of p-chloromandelic acid has been studied in perchlorate media at an ionic strength of 1.50 mol/dm3 by the stopped-flow technique and in H2SO4—MHSO4 (M+ = Li+, Na+, K+) and H2SO4—MClO4 (M+ = H+, Li+, Na+) mixtures at constant total electrolyte concentrations of 1.00 and 2.00 mol/dm3 using the conventional spectrophotometric method. In perchlorate media the kinetic data indicate the formation of two intermediate complexes between cerium (IV) and the organic substrate, but only one is significantly involved in the intramolecular electron-transfer process. The oxidation rate is markedly lower in sulfate media, where two reaction paths have been found to contribute to the overall redox reaction. The univalent cations examined exhibit negative specific effects upon the overall oxidation rate increasing in the order H+ 〈 Li+ 〈 Na+ 〈 K+. Activation parameters have been also estimated.
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  • 16
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    New York, NY : Wiley-Blackwell
    International Journal of Chemical Kinetics 13 (1981) 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 17
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    International Journal of Chemical Kinetics 13 (1981), S. 231-243 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The spectrum of the intermediate product ascribed to nitrosopentane has been detected in the photolysis of the SO2-pentane (RH)-NO mixture. This result has been interpreted in terms of the radical mechanism by assuming the H-atom abstraction from RH by the excited SO2 molecules to be the primary act. The contribution of the singlet and triplet SO2 states to the product formation rate and the ratio of the singlet-to-triplet rate constants have been evaluated. At NO pressures above 5 torr, the product formation rate significantly deviates from the Stern-Volmer dependence.
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  • 18
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    International Journal of Chemical Kinetics 13 (1981), S. 325-332 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The reaction Cl + H2CO → HCl + HCO has been studied at 295 K. Chlorine atoms were produced via the infrared laser induced dissociation of CCl3F, using a pulsed CO2 TEA laser. Using HCl infrared chemiluminescence as the diagnostic, we find the rate constant to be 7.4 ± 0.7 × 10-11 cm3/molecule sec, in good agreement with several recent studies. An evaluation of TEA laser photolysis as a technique for the generation of chlorine atoms is made, and the relationship of this experiment to recent theories of infrared laser induced chemistry is discussed.
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  • 19
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    International Journal of Chemical Kinetics 13 (1981), S. 385-401 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The kinetics of the reaction have been investigated in H2SO4 medium under different conditions. The observed bimolecular rate constant kobs, has been found to depend on [H+]-0.55 and to increase with the initial concentration ratio of the reactants R0 = [H2O2]0/[U (IV)]0 above 0.49. The activation energy of the overall reaction has been determined as 13.79 and 14.3 kcal/mol at R0 = 1 and 0.35, respectively. Consistent with experimental data, a detailed reaction mechanism has been proposed where the hydrolytic reaction (4) followed by the rate-controlling reaction (10) and subsequent fast reactions of U (V) and OH radicals are involved: A kinetic expression has been derived from which a graphical evaluation of (kK4)-1 and k-1 has been made at R0 = 1 as (12.30 ± 0.09) × 10-3 M min, (6.23 ± 2.19) × 10-4 M min; and at R0 = 0.35 as (12.63 ± 2.13) × 10-3 M min, (8.32 ± 6.62) × 10-4 M min, respectively. Indications of some participation of a chain reactionat R0 = 1 have been obtained without affecting thesecond-order kinetics as observed.
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  • 20
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    International Journal of Chemical Kinetics 13 (1981) 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 21
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    International Journal of Chemical Kinetics 13 (1981), S. 433-444 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: No reliable rate constant is available for the self-reaction of tert-;butoxy radicals. We have set up a competition between hydrogen abstraction and self-reaction of tert-butoxy radicals in a flash photolysis electron spin resonance study to extract this information. Experimental values of hydrogen abstraction product radical concentrations under various hydrogen donor concentrations were then compared with theoretically calculated values with different values of 2k4 to obtain the best fit. Hydrogen donors such as cyclopentane, anisole, methyl tert-butyl ether, and methanol were chosen for the study. A value of (1.3 ± 0.5) × 109M-1 sec-1 for the rate constant of the self-reaction of tert-butoxy radicals has been determined at 293°K.
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  • 22
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    International Journal of Chemical Kinetics 13 (1981), S. 481-495 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The thermal decomposition of ethane has been reinvestigated using the single pulse, reflected shock technique. Reflected shock temperatures were corrected for boundary layer-induced nonidealities using the thermal decomposition of cyclohexene as a kinetic standard. The rate constant for the reaction was calculated from the rate of formation of methane under conditions of very low extent of reaction, over a temperature range of 1000-1241 K. Ethane compositions of 1% and 3% in argon at total reaction pressures of 3 and 9 atm were used, and a small pressure dependence of k1 was observed.An RRKM model is described which gives excellent agreement with this and other recent dissociation and recombination rate constant data in light of a recent revision to the thermochemistry of the methyl radical. In the range of 1000-1300 K an RRKM extrapolated k1∞ is given by the expression, log k1∞ = 17.2 - 91,000/2.3RT, while at 298 K the calculation gives log k-1∞ (l/mol sec) = 10.44, where k-1∞ is calculated from k1∞ and the equilibrium constant.
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  • 23
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    International Journal of Chemical Kinetics 13 (1981), S. 503-514 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The title reaction has been investigated in the temperature range of 494-545 K. During the early stages of reaction the only observed products were silyl iodide and hydrogen iodide. Initial rates were found to obey the rate law over a wide range of initial iodine and monosilane pressures. Secondary reactions, most probably of SiH3I with I2, became more important as the reaction progressed. However, provided [SiH4]0/[I2]0 〉 20, these secondary processes had a negligible effect on the kinetics, and an integrated rate expression could be used. These kinetics are consistent with an iodine atom abstraction chain mechanism, and for the step has been deduced. From this the bond dissociation energy D(SiH3—H) = 378 ± 5 kJ/mol (90 kcal/mol) is obtained. The kinetic and thermochemical implications of this value, especially to the pyrolysis of monosilane, are discussed.
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  • 24
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    International Journal of Chemical Kinetics 13 (1981), S. 591-601 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is shown that A factors for atom fissions in polyatomics can be reliably estimated by an improved version of the restricted free rotor model (RFRM). No adjustable parameters are used in the evaluation of A factors for the dissociation of the RO—F bond (R: NO2, SF5, CF3, FSO2), and the authors' predictions are compared with high-pressure kinetic data for these reactions. In the case of O2NOF, for which full spectroscopic information is available, RFRM reproduces the observed value Am well within a factor of 2. Similar agreement is reached for F5SOF and FO2SOF, assigning reasonable limits to their —OF torsional frequencies. For F3COF, Am and the calculated back reaction rate constant, which is independent of the model, are both much too small to be plausible, suggesting falloff effects rather than a failure of RFRM.
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  • 25
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    International Journal of Chemical Kinetics 13 (1981), S. 627-638 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Bis(trifluoromethyl) peroxide is readily dissociated by multiple infrared photon excitation at CO2 laser wavelengths. The primary dissociation product is CF3O; approximately 85% of the nascent radicals are further dissociated in the laser field to form CF2O and F. The F atoms then react with the remaining CF3O to produce CF3OF. The formation of CF3OF is strongly inhibited by addition of HI, which reacts preferentially with the F atoms.
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  • 26
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    International Journal of Chemical Kinetics 13 (1981), S. 695-705 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The acid-catalyzed enolization of acetone in the presence of bromine is found to be catalyzed by the anionic micelles of sodium dodecyl sulfate. The rate acceleration expected on the basis of lowering of activation energy is largely nullified by the decrease in the entropy of activation, leading to a very small rate enhancement, i.e., kψ/k0 = 1.2 at 30°C. The binding constant for the micelle-substrate complex is determined. The micellar rate enhancement is the same, irrespective of the halogen used, chlorine, bromine, or iodine.
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  • 27
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: With a continuous jet-stirred tank reactor operating at small space time (0.05-1.2 s) the kinetics of the formation of six minor products (ethane, isobutane, butene-1, 2,3-dimethyl-butane, 4-methylpentene-1, and 1,5-hexadiene) are studied during the pyrolysis of propane, at small extents of reaction and over the temperature range of 600-780°C. The experimental results are in agreement with the free radical mechanism proposed by Jezequel, Baronnet, and Niclause for this reaction. They show that the two most important termination processes are The measured rates of formation of the minor products are consistent with the quasi-identical values estimated by Jezequel and co-workers (between 475 and 505°C) and by Allara and Edelson (between 510 and 560°C) for kinetic parameters (A1 ≃ 1016.65 s-1 and E1 ≃ 84.7 kcal/mole) of the chain initiation process
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    International Journal of Chemical Kinetics 13 (1981), S. 39-58 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A small tubular reactor having an inner diameter of 1-2 mm andused as the source in a molecular beam apparatus is described in detail. This arrangement allows the study of fast reactions with reaction times smaller than 1 msec. The preexplosive reaction phase between F2 and H2 and CH4, respectively, is investigated to find out the initiation reactions. In the F2/H2 reaction, initiation is brought about by heterogeneous generation of F atoms or some other surface reaction. Evidence is also obtained for chain branching reactions. In the F2/CH4 case the dominant initiation reaction is the homogeneous reaction CH4 + F2 → CH3 + HF + F. The rate constant for the reaction between 300 and 400 K is 1012.3±0.3 exp[-47 ± 8 kJ/mol/RT] cm3/mol sec. The analysis of the experimental data also yields the rate constant for the propagation reaction CH3 + F2 → CH3 F + F, which is 1012.3±0.3 exp[-4.6 ±2.1 kJ/mol/RT] cm3/mol sec.
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  • 29
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    International Journal of Chemical Kinetics 13 (1981), S. 321-322 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 30
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    International Journal of Chemical Kinetics 13 (1981), S. 463-471 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The kinetics of thermal decomposition of ethyl, isopropyl, and t-butyl trifluoroacetates have been studied in the gas phase. In each case initial decomposition follows the normal ester route to give an olefin and trifluoroacetic acid, and elimination of hydrogen fluoride does not occur. However, trifluoroacetic acid is thermally unstable at ethyl and isopropyl ester decomposition temperatures, and further products result, including those from the difluorocarbene produced by decomposing trifluoroacetic acid. Placing a CF3 group at an ester's γ carbon increases the polarity of its transition state and decreases its thermal stability. The activation energies of the ethyl and isopropyl esters are lowered by 3.8 and 4.7 kcal/mol compared to the corresponding acetates, and the primary decomposition kinetics, which are homogeneous and of the first order, are expressed by α-Methylation enhances the reactivity of the trifluoroacetates, and the t-butyl ester, the transition state for which is sufficiently polar for heterogeneous decomposition to occur, shows signs of thermal instability at room temperature. The equilibrium was also investigated and gave ΔH° = +13,580 cal/mol and ΔS° = +31.07 gibbs/mol in the forward direction. The results obtained extend and support the known structure-rate correlations in the gas-phase elimination of esters.
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    International Journal of Chemical Kinetics 13 (1981), S. 445-462 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The thermal unimolecular decomposition of ethylbenzene, isopropylbenzene, and tert-butylbenzene was studied using the very-low-pressure pyrolysis (VLPP) technique. Each reactant decomposed by way of β C—C bond homolysis, producing methyl radicals and benzyl or benzylic-type radicals. RRKM calculations show that the observed rate constants, when combined with thermochemical estimates, are consistent with the following high-pressure rate expressions: \documentclass{article}\pagestyle{empty}\begin{document}$ \log k(\sec ^{ - 1}) = 15.3 - (72.7/{\rm \theta)} $\end{document} for ethylbenzene between 1053 and 1234 K, \documentclass{article}\pagestyle{empty}\begin{document}$ \log k(\sec ^{ - 1}) = 15.8 - (71.3/{\rm \theta)} $\end{document} for isopropylbenzene between 971 and 1151 K, and \documentclass{article}\pagestyle{empty}\begin{document}$ \log k(\sec ^{ - 1}) = 15.9 - (69.1/{\rm \theta)} $\end{document} for tert-butylbenzene between 929 and 1157 K, where θ (kcal/mol) = 2.303RT. Resulting activation energies combined with heat capacity and heat of formation data led to the following dissociation enthalpies and enthalpies of formation at 298 K: DH° (øCH(CH3)—CH3) = 73.8 kcal/mol, ΔHf° (øÇCH(CH3)) = 39.6 kcal/mol, DH° (øC(CH3)2—CH3) = 72.9 kcal/mol, and ΔHf° (øÇ(CH3)2) = 32.4 kcal/mol. Derived high-pressure rate constants are in good accord with results of lower temperature toluene- and aniline-carrier experiments.
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  • 32
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    International Journal of Chemical Kinetics 13 (1981) 
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    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
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  • 33
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    International Journal of Chemical Kinetics 13 (1981), S. 149-172 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Overall and detailed kinetic descriptions of the pyrolysis of C3H8 have been proposed as a result of a turbulent flow reactor investigation in the temperature range of 1110-1235 K and at atmospheric pressure. The overall reaction was described by a first-order rate expression with an activation energy of 58.65 kcal/mol and a preexponential factor of 3.2 × 1012 sec-1. This expression agrees with previously reported rate data. In addition, a kinetic mechanism involving 13 chemical species and 32 elementary reactions has been postulated to describe the kinetics. Experimental data from the present flow reactor experiments and from static vessel and shock tube experiments reported in the literature were used to verify the mechanism. Agreement over the temperature range of 800-1400 K and over the pressure range of 0.1-8.5 atm was obtained by adjusting three rate constants. Previously reported values for these rate constants appear to require reexamination. The reactions in question are the following: The sum of the rate constants for reactions (2a) and (2b) and the rate constant for reaction (23) are best represented by \documentclass{article}\pagestyle{empty}\begin{document}$$ k_{2a} + k_{2b} = 10^{- 0.1} T^4 \exp (-8300/{\rm RT}){\rm cm}^3 /{\rm mol}\;{\rm sec} $$\end{document} and \documentclass{article}\pagestyle{empty}\begin{document}$$ k_{23} = 10^{14.55} \exp (-14,340/{\rm RT}){\rm cm}^3 /{\rm mol}\;{\rm sec} $$\end{document} which differ with the expressions in the literature.
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    International Journal of Chemical Kinetics 13 (1981), S. 209-217 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: By measuring the rates of decay of ozone in a large excess of reactant, second-order rate constants have been obtained for the reactions of ozone with ethene, propene, but-1-ene, trans-but-2-ene, isobutene, hex-1-ene, cyclopentene, cyclohexene, isoprene, vinyl fluoride, 1,1-difluoroethene, cis-1,2-difluoroethene, trans-1,2-difluoroethene, trifluoroethene, tetrafluoroethene, and 2,5—dihydrofuran. The reactions have been studied in synthetic air at atmospheric pressure and at temperatures of 294 and 260 K. The rate constants and Arrhenius parameters are discussed in relation to existing kinetic data on ozone-alkene reactions.
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  • 35
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    Keywords: Chemistry ; Physical Chemistry
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    Topics: Chemistry and Pharmacology
    Notes: Studies of the unimolecular decomposition of 4-methylpent-2-yne (M2P) and 4,4-dimethylpent-2-yne (DM2P) have been carried out over the temperature range of 903-1246 K using the technique of very-low pressure pyrolysis (VLPP). The primary reaction for both compounds is fission of the C—C bond adjacent to the acetylenic group producing the resonance-stabilized methyl-substituted propargyl radicals, CH3C≡ĊH(CH3) from M2P and CH3C≡CĊ(CH3)2 from DM2P. RRKM calculations were performed in conjunction with both vibrational and hindered rotational models for the transition state. Employing the usual assumption of unit efficiency for gas-wall collisions, the results show that only the rotational model with a temperature-dependent hindrance parameter gives a proper fit to the VLPP data over the entire experimental temperature range. The high-pressure Arrhenius parameters at 1100 K are given by the rate expressions log k2 (sec-1) = (16.2 ± 0.3) - (74.4 ± 1.5)/θ for M2P and log k3 (sec-1) = (16.4 ± 0.3) - (71.4 ± 1.5)/θ for DM2P where θ = 2.303RT kcal/mol. The A factors were assigned from the results of recent shock-tube studies of related alkynes. Inclusion of a decrease in gas-wall collision efficiency with temperature would lower both activation energies by ∼1 kcal/mol. The critical energies together with the assumption of zero activation energy for recombination of the product radicals at 0 K lead to DH0[CH3CCCH(CH3)—CH3] = 76.7 ± 1.5, ΔHf0[CH3CCCH(CH3)] = 65.2 ± 2.3, DH0[CH3CCCH(CH3)—H] = 87.3 ± 2.7, DH0[CH3CCC(CH3)2—CH3] = 72.5 ± 1.5, ΔHf0[CH3CCĊ(CH3)2] = 53.0 ± 2.3, and DH0[CH3CCC(CH3)2—H] = 82.3 ± 2.7, where all quantities are in kcal/mol at 300 K. The resonance stabilization energies of the 1,3-dimethylpropargyl and 1,1,3-trimethylpropargyl radicals are 7.7 ± 2.9 and 9.7 ± 2.9 kcal/mol at 300 K. Comparison with results obtained previously for other propargylic radicals indicates that methyl substituents on both the radical center and the terminal carbon atom have little effect on the propargyl resonance energy.
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    International Journal of Chemical Kinetics 13 (1981), S. 283-293 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is assumed that A∞ in the limiting high-pressure unimolecular rate constant expression k∞ = A∞ exp(-Ea∞/kT) is given by A∞ = A″∞eBkT. The test case is the decomposition butane → 2 ethyl, where a negative B reproduces the temperature dependence of A∞ about as well as the previously considered power law A∞ = A′∞(kT)n. It is shown that the term eBkT modifies significantly the high-temperature falloff of the general-pressure rate constant kuni and its various derivatives, and admits of a fairly simple interpretation in terms of Benson's restricted rotor theory. On physical grounds, the exponential law appears more reasonable than the power law.
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    International Journal of Chemical Kinetics 13 (1981), S. 323-323 
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    Keywords: Chemistry ; Physical Chemistry
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  • 38
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    International Journal of Chemical Kinetics 13 (1981), S. 333-365 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Models for the energy profile along the reaction coordinate are utilized to determine the barrier's height and location as a function of ΔG. These form the basis for structure-reactivity correlations and afford a unified formulation for various postulates in the field of physical organic chemistry. Current experimental evidence is examined for the resulting correlations, and some of their applications as an aid to the chemical kineticist are presented.
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    International Journal of Chemical Kinetics 13 (1981), S. 411-416 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The entropy of activation for the hydrolysis of pentaphenoxyphosphorane in 25% aqueous dioxane is -188 J/mol deg. The enthalpy of activation is 22.5 kJ/mol, which is small for the relatively slow reaction. This suggests that the reaction is a multistep process having a preliminary equilibrium with a negative heat of reaction. This conclusion is supported by the results obtained for the hydrolysis of C6H5[OCH(CF3)2]2. A kinetic isotope effect kH2O/kD2O of 3.46 was found for the latter reaction. Orders in water were obtained, and a mechanism of hydrolysis is proposed.
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    International Journal of Chemical Kinetics 13 (1981), S. 497-501 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A competitive reaction study for two isoelectronic peroxides (peroxodisulfate S2O82- and peroxodiphosphate P2O84-) interacting with the free radical ·Clpar;CH3)2OH is described. The radical formation is initiated by photolysis, the amounts of peroxide remaining analyzed volumetrically. It is found that persulfate reacts with the organic radical over 100 times more rapidly than does perphosphate. Mechanistic consequences in relation to previous work are briefly discussed.
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    International Journal of Chemical Kinetics 13 (1981), S. 527-541 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The decay of photochemically generated tert-butyl radicals in methylcyclopentane solutions containing chloroform is studied by time-resolved ESR spectroscopy. In the pure solvent it perfectly follows the second-order rate law for radical self-termination. Increasing chloroform concentrations cause increasing admixture of a pseudo-first-order decay from which the rate constant of the title reaction is obtained. For 273 K ≦ T ≦ 323 K, \documentclass{article}\pagestyle{empty}\begin{document}$$ {\rm log}\,{\rm k(}M^{{\rm - 1}}\sec ^{ - 1}) = (8.41 \pm 0.14) - \frac{{8.12 \pm 0.18}}{\theta } $$\end{document} where θ = 2.303RT kcal/mol. CIDNP studies of the reaction mechanism and NMR product yields show H and Cl abstractions to occur with the temperature-independent ratio kH/kCl = 1.4 ± 0.1. The results point to polar effects in the transfer reactions of tert-butyl. The potential of time-resolved ESR spectroscopy in studies of first- and pseudo-first-order reaction rates is discussed.
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    International Journal of Chemical Kinetics 13 (1981) 
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    International Journal of Chemical Kinetics 13 (1981), S. 615-625 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The decomposition of cyclobutyl chloride following multiple infraredphoton excitation has been investigated. The primary photolysis products are butadiene, from elimination of HCl, and ethylene and vinyl chloride, fromring scission. The vinyl chloride undergoes secondary decomposition to acetylene and HCl. In addition to these products, known from thermal VLPP experiments, we also find 1-butene, which may arise from a higher energy C—Cl homolysis channel. Collisions with either reactant molecules oradded buffer gas lead to cooling of the laser-produced vibrational energy distributions. The average amount of energy removed per collision is 15-20 kcal/mol for self-collisions and 2-4 kcal/mol with argon.
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    International Journal of Chemical Kinetics 13 (1981), S. 667-675 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The absolute rate constant for the reaction of methyl radicals with ozone has been measured as a function of temperature. Small concentrations of CH3 were generated by flash photolyzing CH3NO2 at 193 nm with an ArF laser. A photoionization mass spectrometer was used to follow the rate of decay of CH3 at various ozone concentrations. The resulting rate constants could be fit by the expressions \documentclass{article}\pagestyle{empty}\begin{document}$$ k_1 = (5.4 \pm 1.5) \times 10^{ - 12} \exp [(- 216 \pm 80)/T]{\rm cm}^3 /{\rm molec}\,{\rm s} $$\end{document} \documentclass{article}\pagestyle{empty}\begin{document}$$ k_1 = (2.6 \pm 0.7) \times 10^{ - 12} {\rm (T/300)}^{{\rm 0}{\rm .71} \pm {\rm 0}{\rm .34}} {\rm cm}^3 /{\rm molec}\,{\rm s} $$\end{document} over the temperature range of 243-384 K. These rate constants can be modeled by simple transition state theory using reasonable parameters for the activated complex. Use of this rate constant shows that less than 1% of the methyl radicals formed in the stratosphere react with ozone.
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    International Journal of Chemical Kinetics 13 (1981), S. 693-693 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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    International Journal of Chemical Kinetics 13 (1981), S. 707-728 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The reaction C2H5 + O2 → C2H5O2 in glassy methanol-d4 and the H-atom abstraction by CH3, C2H5, and n-C4H9 radicals in C2H5OH + C2D5OH and CD3CH2OH + C2D5OH glassy mixtures have been studied by electron spin resonance. The analysis of the dependence of the reaction rates on the concentration of O2 (oxidation) and C2H5OH, CD3CH2OH (H-atom abstraction) has shown that the √t law is not conditioned by the existence of regions characterized by different rate constants.
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    International Journal of Chemical Kinetics 13 (1981), S. 799-815 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: H atoms react with C2H5SSC2H5 to give C2H5SH as the sole retrievable product with φ = 2.32 at 25°C and 2.84 at 145°C. The primary reaction is postulated to be H + C2H5SSC2H5 ← C2H5SH + C2H5S with k1 = (4.73 ± 0.64) × 1013 exp [-(1710 ± 69)/RT] cm3/mol·s relative to the rate constant of the H + C2H4 ← C2H5 reaction. The high value of the entropy of activation suggests the presence of partial hydrogen bonding in diethyldisulfide which is broken in the transition state.Ethylmethyldisulfide reacts similarly: H + C2H5SSCH3 ← C2H5SH + CH3S or CH3SH + C2H5S. The thiyl radicals propagate a chain of radical exchange reactions forming the symmetrical disulfides with exposure-time-dependent quantum yields. The overall kinetics conform to a 16-step mechanism from which the rate constants of the elementary reactions could be established by computer modeling. Thiyl radicals react considerably more slowly with disulfides than H atoms.
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    International Journal of Chemical Kinetics 13 (1981), S. 873-881 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: CFBr radicals produced by the reaction of atomic oxygen with F2CCFBr were monitored in a discharge flow system by fluorescence excited at 424 nm. The rate coefficients for reactions of the CFBr radicals were measured between 298 and 358 K, and the following values were obtained in units of cm3/molec·s: O2 〈 2 × 10-16 at 353 K; NO 〈 10-14 at 298 K; F2CCFBr 〈 10-15 at 298 K; Cl2 (1.9 ± 0.6) × 10-12 exp(-762 ± 92/T) Br2 (1.4 ± 0.3) × 10-12 exp(-533 ± 62/T).
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    International Journal of Chemical Kinetics 13 (1981), S. 865-872 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Consideration of current information on the dependence of the electron transfer rate on the radial separation distance and on the reactants′ radial distribution function suggests for adiabatic transfers a frequency factor closer to 1012M-1 s-1 than to 1011M-1 s-1. One effect is to raise the λ values estimated from self-exchange rate constants, and to extend thereby the range of ΔG°'s in which the “inverted region′” is masked by a diffusion-controlled reaction rate.
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    International Journal of Chemical Kinetics 13 (1981), S. 125-133 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new method of theoretical prediction of the kinetic rate constants of fast chemical reactions in solutions is presented. It takes into account the effect of finite diffusive displacements of the reacting molecules. The approach is based on the solution of the steady-state Fokker-Planck equation by the moments method of Grad developed in the theory of coagulation of aerosol particles. A comparison of the predicted rate constants with the experimental data provided by Schuh and Fischer for the self-reaction of tert-butyl radicals in n-alkanes shows a good correspondence.
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    International Journal of Chemical Kinetics 13 (1981), S. 317-320 
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    Keywords: Chemistry ; Physical Chemistry
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    Topics: Chemistry and Pharmacology
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    International Journal of Chemical Kinetics 13 (1981), S. 303-316 
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    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The rate of the reverse reaction of the system has been measured in the range of 584-604 K from a study of the azomethane sensitized pyrolysis of isobutane. Assuming the published value for the rate constant of recombination of t-butyl we obtain \documentclass{article}\pagestyle{empty}\begin{document}$$ \log k_{{\rm - 1}} (\sec ^{- 1}) = 14.67 - 39.4\,{\rm kcal}/{\rm mol}/(2.3{\rm RT}) $$\end{document} Combination with our published data for k1 permits the evaluation \documentclass{article}\pagestyle{empty}\begin{document}$$ \log K_1 ({\rm atm}^{ - 1}) = 7.94\,\,{\rm at}\,\,600{\rm K} $$\end{document}We have modified a previously published structural model of t-butyl by the inclusion of a barrier to free rotation of the methyl groups in order to calculate values of the entropy and enthalpy of t-butyl as a function of temperature. Using standard data for H and for i-C4H8 we obtain \documentclass{article}\pagestyle{empty}\begin{document}$$ \Delta H_ f^\circ(t - {\rm butyl},\,300\,{\rm K})({\rm kcal}/{\rm mol}) = 10.6 \pm 0.5 $$\end{document}We have obtained other, independent values of this quantity by a reworking of published data using our new calculations of the entropy and enthalpy of t-butyl. There is substantial agreement between the different values with one exception, namely, that derived from published data on the equilibrium \documentclass{article}\pagestyle{empty}\begin{document}$$ i - {\rm C}_{\rm 4} {\rm H}_{{\rm 10}} + {\rm I}\rightleftharpoons t{-} {\rm C}_4 {\rm H}_9 + {\rm HI} $$\end{document} which is significantly lower than the other values.We conclude that the value \documentclass{article}\pagestyle{empty}\begin{document}$$ \Delta H_ f^\circ(t - {\rm butyl},\,300\,{\rm K})({\rm kcal}/{\rm mol}) = 10.5 \pm 1.0 $$\end{document}obtained from the present work and a reworking of published data which involves the use of experimental data on t-butyl recombination is incompatible with the result based on iodination data.
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  • 55
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    International Journal of Chemical Kinetics 13 (1981), S. 403-410 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The rates of pyrolysis of 4-chloro-2-butanone in the gas phase have been determined in a static system seasoned with the products of decomposition of allyl bromide. The reaction is catalyzed by hydrogen chloride. Under maximum catalysis of HCl, the kinetics were found to be of order 1.5 in the substrate suggesting that a complex elimination is involved. The reaction, when maximally inhibited with propene, appears to undergo a unimolecular elimination and follows a first-order law kinetics. The products are methylvinyl ketone and hydrogen chloride. The kinetics have been measured over the temperature range of 402.0-424.4°C.The rate coefficients are given by the Arrhenius equation \documentclass{article}\pagestyle{empty}\begin{document}$ \log k_1 (\sec ^{ - 1}) = (13.67 \pm 0.69) - (225.2 \pm 8.6)\,{\rm kj}/{\rm mol}/2.303RT\angle $\end{document}. Thepyrolysis of 4-chloro-2-butanone is 31 times greater in rate than that of ethyl chloride at 440°C. This large difference in rate may be attributed to the -M effect of the acetyl substituent in the pyrolysis of the former halo compound.
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  • 56
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    International Journal of Chemical Kinetics 13 (1981), S. 7-21 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The pyrolysis of gaseous neopentyl bromide to 2-methyl-2-butene, 2-methyl-1-butene, and hydrogen bromide was studied under conditions of maximal inhibition by cyclohexene over the temperature range of 389-444°C. This reaction was shown to beconsistent with a first-order homogeneous molecular process, with Arrhenius parameters of E = 247 ± 5 kJ/mol and log A (sec-1) = 14.2 ± 0.3. Examination of the uninhibited reaction showed it to be a radical process, simpler than that with neopentyl chloride, there being only one propagation step, thedissociation of the γ-radical to 1,1-dimethylcyclopropane and a bromine atom.
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  • 57
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    International Journal of Chemical Kinetics 13 (1981), S. 69-84 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The reaction of O(3P) atoms with propanehas been studied at temperatures near 300 K by using a discharge flow system. Oxygen atoms were generated in the absence of molecular oxygen by the reaction N + NO → N2 + O, nitrogen atoms having been generated in a microwave discharge. Rate constants for the reaction were measured in two ways, either by measurement of O-atom decay in the presence of excess propane or by measuring the change in propane concentration after an appropriate time in the presence of an excess of oxygen atoms. The two methods were in good agreement, and the mean rate constant at 306 K is given by \documentclass{article}\pagestyle{empty}\begin{document}$$ k_1 = (4.7 \pm 0.8) \times 10^6 {\rm dm}^3 /{\rm mol}\;\sec $$\end{document} A study of the products of the reaction under conditions corresponding to complete removal of oxygen atoms has shown that an important product of the reaction in the early stages is propene. This is difficult to explain interms of a mechanism involving alkoxy radicals similar to that which has been proposed for some other O(3P)-hydrocarbon reactions. An alternative mechanism is proposed in terms of successive hydrogen abstraction reactions.
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  • 58
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    International Journal of Chemical Kinetics 13 (1981), S. 119-123 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The reactivity of amines towards tert-butoxy radicals depends upon the amine ionization potential and the solvent, indicating that polar structures contribute to the reactivity of these compounds. Nevertheless, the dependence with the amine potential is smaller than the one obtained for the quenching of carbonyl excited states by amines and other factors as the strength of the broken hydrogen bond and steric hindrance are also significant in determining the rate of the process.
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  • 59
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    International Journal of Chemical Kinetics 13 (1981), S. 741-753 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A study of the thermal decomposition of an acetylene-ethane-d6 mixture indicates that the rate constant for hydrogen abstraction from acetylene by methyl is more than 20 times less than for abstraction from ethane. Isotopic exchange is initiated by a rapid reaction between product D atoms and C2H2. A series of experiments involving the reactions of a D2-acetylene mixture indicated that a molecular exchange process was also occurring, and it was shown that d[C2HD]/dt = k[D2]0.7[C2H2]0.3, effective activation energy = 15.8 kcal/mol. This mechanism made an insignificant contribution to isotope exchange in C2H2-C2D6 mixtures.
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  • 60
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    International Journal of Chemical Kinetics 13 (1981), S. 817-831 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Methyl nitrate decomposition is accompanied by self-heating. Using very fine thermocouples, direct measurements of excess temperatures have been made to establish the intensity and extent of self-heating in nonisothermal reaction. The measurements are displayed as contourlines of equal degrees of temperature excess on the pressure-temperature ignition diagram.A twofold kinetic investigation has been made of the overall reaction. One part concentrates on achieving isothermal conditions and full characterization of intermediate products. It uses mass-spectrometric analyses both to establish stoichiometry throughout decomposition and to validate velocity constant measurements derived from continuous pressure-time records. The best value for E = 151 ± 3 kJ/mol is about 10 kJ/mol less than previously.The other part deliberately invades the nonisothermal region to test the qualitative and quantitative predictions of theory (1) that uncorrected reaction orders and activation energies will exceed their isothermal values, (2) that their relative excess (δn/n, δE/E) will be about the same, and (3) that they will be dependent in a simple and predictable way on the reduced excess central temperature.
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  • 61
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    International Journal of Chemical Kinetics 13 (1981), S. 785-786 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
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    Topics: Chemistry and Pharmacology
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  • 62
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    International Journal of Chemical Kinetics 13 (1981), S. 787-788 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 63
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    International Journal of Chemical Kinetics 13 (1981), S. 833-844 
    ISSN: 0538-8066
    Keywords: Chemistry ; Physical Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Arrhenius parameters for the decomposition reactions of various alkoxy radicals are evaluated. The recommended values for tert-butoxy radical decomposition reaction are log A (s-1) = 14.1, Ea = 15.3 kcal/mol. The parameters give reasonably self-consistent results with related rate constants, product distributions of hydrocarbon oxidation reactions, and the values reported in different laboratories in different environments.A reworking of data by Batt et al. on RO + NO and RO + NO2 leads to a lowering of his A factors for these reactions by a factor of 5. It also leads to a similar lowering of the A factors for RO decompositions. The intrinsic activation energies E for the addition of alkyl radicals R to the carbonyl group are not only found to be a function of the exothermicity of reaction, but they are also dependent on the nucleophilicity of the alkyl radicals. For each radical R (Me, Et, i-Pr) the data can be fit to an Evans-Polanyi plot E = a + b (δH), where a uniform slope b = 0.58 can be found for all R. The intercepts a are then found to decrease nearly linearly with the decreasing ionization potential of R, namely, a = 2.1 [IP] - 6.2 (kcal/mol), with the ionization potential given in electron volts.
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  • 64
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    Journal of Computational Chemistry 2 (1981), S. 1-6 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The barriers on the MINDO/3 reaction paths for π and σ approaches to concerted cycloaddition of methylene to s-cis-1,3-butadiene are analyzed by a new energy decomposition scheme and compared to the results of published extended Hückel calculations. The relatively small (6 kcal) preference for the σ approach is essentially based on next-nearest-neighbor (1,3) resonance interactions, which are stabilizing in the σ but destabilizing in the π approach. Both routes are characterized by large distortion energies (mainly disrotation at the diene termini in the case of the π approach) and nonbonded repulsions. The excessive magnitude of both of these effects ultimately derives from the weak pericyclic binding which prevails at initial diene geometries, especially the pericyclic topology involving the methylene LUMO. Although previous work has emphasized the contribution of closed-shell repulsions to the barrier, no such effect is explicitly included in MINDO. The closed-shell repulsions to which the extended Hückel barrier has been solely attributed are shown to involve next-nearest-neighbor (antiaromatic) resonance interactions.
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  • 65
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    Journal of Computational Chemistry 2 (1981), S. 14-19 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The empirical potential, EPEN, has been used to establish the structures of isolated hydrogen-bonded clusters in methanol. The most stable configuration of the dimer is found to have a trans near-linear form, whereas the most stable forms of the trimer and tetramer are cyclic. Charge interactions in the tetramer make it the most stable, in terms of energy per hydrogen bond, of these three species. These results are in conformity with various types of experiment. Other species of dimer, trimer, and tetramer, corresponding to local energy minima, have also been identified.
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  • 66
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The C=O bond length and fC=O,C=O, the corresponding harmonic stretching force constant, are calculated ab initio using the 4-31G basis set (augmented by polarization functions on the sulfur and chlorine) with full geometry optimization for the monosubstituted carbonyl compounds RCHO, where R = H, CHO, CH=CH2, CO2H, CH=CHOH, OH, OC(=O)OH, OOH, S—H, Li, F, Cl, and NH2. Straight-line relationships are found in plots of ln[fC=O,C=O] vs. ln[rC=O] for the series of compounds in which carbon atoms and oxygen atoms are bonded directly to the carbonyl carbon, in accordance with the empirical expression f = C′/rn. The slopes and intercepts give n = 7.62 and 6.47, C′ = 62.6 and 48.6, for the lines with carbon and oxygen as the atom bonded directly to the carbonyl carbon, respectively. The point for formaldehyde lies very close to the C line, whereas the points for SH, Li, F, Cl, and NH2 lie closer to the O line.
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  • 67
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    Journal of Computational Chemistry 2 (1981), S. 161-167 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Parameters for sulfoxides used in force field MM1 were modified to be incorporated into force field MM2. The conformations of ten alkyl sulfoxides were then calculated using MM2 with these new parameters. The alkyl groups used were methyl, ethyl, isopropyl, and t-butyl. It was found that of the many possible conformations for these compounds, only one or two stable conformers exist, and that the number of these conformers agrees with the number of reported S—O stretching frequencies in almost every case. No apparent correlation between the vibration frequency and the molecular structure was found.
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  • 68
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    Journal of Computational Chemistry 2 (1981), S. 182-187 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Harmonic force fields have been calculated for the planar hydrogen-bonded ring conformer of β-hydroxyacrolein, cCc, which is the most stable, and the chain conformer, cCt, generated by 180° rotation of O—H about the C—O bond axis. The equilibrium structure obtained using the 4-31 G basis set with full geometry optimization was employed in each case. Selected force constants for the bonds directly concerned in the formation of the ring from the chain structure, and the increments in going from the one to the other, are compared with the values for the corresponding conformers of performic and formic acids. As the ring size increases from four in trans-formic acid, to five in cis-cis-performic acid and to six in the cCc conformer of β-hydroxyacrolein there is a successive increase in the mechanical strength of the hydrogen-bridging unit. The energy changes for the chain → ring conversion do not follow this progression: performic acid is out of order. But, since a force constant is a localized bond property, whereas the energy changes are determined not only by interactions specific to the hydrogendonor and hydrogen-acceptor groups but also by interactions involving more distant parts of the molecule, the force constants for the bonds directly concerned in the formation of the hydrogen bridge provide a less ambiguous basis for comparing the strength of the intramolecular hydrogen bonding.
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  • 69
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    Journal of Computational Chemistry 2 (1981), S. 188-199 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Ab initio SCF calculations with the STO-3G basis set have been performed to investigate the structural, energetic, and electronic properties of mixed water-uracil dimers formed at the six hydrogen-bonding sites in the uracil molecular plane. Hydrogen-bond formation at three of the carbonyl oxygen sites leads to cyclic structures in which a water molecule bridges N1—H and O2, N3—H and O2, and N3—H and O4. Open structures form at O4, N1—H, and N3—H. The two most stable structures, with energies of 9.9 and 9.7 kcal/mole, respectively, are the open structure at N1—H and the cyclic one at N1—H and O2. These two are easily interconverted, and may be regarded as corresponding to just one “wobble” dimer. At 1 kcal/mole higher in energy is another “wobble” dimer consisting of an open structure at N3—H and a cyclic structure at N3—H and O4. The third cyclic structure at N3—H and O2 collapses to the “wobble” dimer at N3—H and O4. The two “wobble” dimers are significantly more stable than the open dimer formed at O4, which has a stabilization energy of 5.4 kcal/mole. Uracil is a stronger proton donor to water through N1—H than N3—H, owing to a more favorable molecular dipole moment alignment when association occurs through H1. Hydration of uracil by additional water molecules has also been investigated. Dimer stabilization energies and hydrogen-bond energies are nearly additive in most 2:1 water:uracil structures. There are three stable “wobble” trimers, which have stabilization energies that vary from 7 to 9 kcal/mole per water molecule. Hydrogen-bond strengths are slightly enhanced in 3:1 water:uracil structures, but the cooperative effect in hydrogen bonding is still relatively small. The single stable water-uracil tetramer is a “wobble” tetramer, with two water molecules which are relatively free to move between adjacent hydrogen-bonding sites, and a stabilization energy of approximately 8 kcal/mole per water molecule. Within the rigid dimer approximation, successive hydration of uracil is limited to the addition of one, two, or three water molecules.
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    Journal of Computational Chemistry 2 (1981), S. 287-303 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: We describe a computer program we have been developing to build models of molecules and calculate their interactions using empirical energy approaches. The program is sufficiently flexible and general to allow modeling of small molecules, as well as polymers. As an illustration, we present applications of the program to study the conformation of actinomycin D. In particular, we study the rotational isomerism about the D-Val-, L-Pro, and L-Pro-Sar amide bonds as well as comparing the energy and structure of the Sobell model and the x-ray structure of actinomycin D.
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  • 71
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    Journal of Computational Chemistry 2 (1981), S. 304-323 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Electrostatic potentials and Mulliken net atomic charges were calculated from STO-3G, 6-31G, and 6-31G** SCF-MO wavefunctions for hydrogen fluoride, water, ammonia, methane, acetylene, ethylene, carbon dioxide, formaldehyde, methanol, formamide, formic acid, acetonitrile, diborane, and carbonate ion. In each case optimized net atomic charges (potential-derived charges) were also obtained by fitting the electrostatic potentials calculated directly from the wavefunctions in a shell enveloping the molecules outside of their van der Waals surfaces. The electrostatic potentials calculated from the potential-derived charge distributions were then compared with the defined quantum mechanical electrostatic potentials and with the electrostatic potentials of the Mulliken charge distributions.
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  • 72
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    Journal of Computational Chemistry 2 (1981), S. 356-360 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: At high levels of ab initio theory (6-31G*//4-31G), the most stable C4H42+ isomer is indicated to be the nonplanar cyclobutadiene dication (1a); the planar form, 1b, is indicated to be 7.5 kcal/mol less stable. The second most stable C4H42+ isomer, the methylenecyclopropene dication, is indicated to prefer the perpendicular (2a) over the planar (2b) arrangement by 7 kcal/mol. The “anti van't Hoff” cyclo-(HB)2C=CH2 system (4), isoelectronic with 2, also prefers the perpendicular conformation (4a), and retains the C=C double bond. The linear butatriene dication (3) is the least stable C4H42+ species investigated. The perpendicular (D2d) arrangement (3a), permitting double allyl cationlike conjugation, is preferred over the planar D2h form (3b) by 26 kcal/mol. The heat of formation of the most stable form of C4H42+, 1a, is estimated to be 623-640 kcal/mol. This species should be thermodynamically stable toward dissociation into smaller charged fragments.
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  • 73
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: New estimates of Hartree-Fock limit energies (ERHF) for selected AH and AHn hydrides, diatomic and linear polyatomic molecules have been made utilizing ESCF values recently reported in the literature for HF, N2, CO, NH3, and CH4 which are very close to the respective limits. These new values have been used to investigate the applicability of Ermler and Kern's procedure for estimating ERHF: i.e., a factor f is first evaluated from data for reference molecules, where f = ERHF/ESCF, which is then used with ESCF values for other molecules to obtain their ERHF values. f has been evaluated for three groups of reference molecules—HF, H2O, NH3, CH4, N2, and CO; CH4, C2H2, C2H4, and C2H6; and C2H2, HCN, and N2—utilizing ESCF data in the literature for many Gaussian-type orbital (GTO) basis sets together with some new values calculated at the (9,5,1) to (13,8,2) levels. Trends in the variation of f within each group of reference molecules from one basis set to another, and the trends in f from one group of reference molecules to another, are discussed in detail. To minimize the influence of these effects in an ERHF estimate it is recommended that the f value should be derived from reference molecules which possess a similar combination of structural features, i.e., bonded hydrogen, single, double, or triple bonds, and the number of lone-pair electrons. Further calculations show that an f value based on data for closed-shell molecules is not applicable to open-shell species.
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    Journal of Computational Chemistry 2 (1981), S. 53-57 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The charge distributions along the CH bonds of methane, ethylene, and acetylene have been obtained by numerical integration of 6-31G** wavefunctions. Several criteria for assigning electron populations to carbon and hydrogen lead to negative charge on H for methane and ethylene and a positive charge on H for acetylene. These results are contrasted with the charges derived from the μCHeff obtained from infrared intensity measurements. The difference between the results from infrared intensities and from the electron density calculations has been shown to result from incomplete orbital following in the molecular deformation and the creation of a “bent-bond” moment. Its magnitude has been estimated.
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  • 75
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    Journal of Computational Chemistry 2 (1981), S. 83-86 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A modified integral package for evaluation of two-electron integrals over Gaussian basis functions is described. Modifications are implemented in the MOLECULE program system and are especially suited for the study of large molecules and molecular complexes.
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  • 76
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The Gaussian-type basis sets for molecular calculations are usually prepared by an atomic SCF program in which spherical coordinates are used. On the other hand, many molecular SCF and CI programs are written by using the Cartesian coordinates and as a result six-membered d-type functions (x2, y2, z2, xy, yz, zx)e-γr2 are often used. They contain one additional 3s function which does not exist in the atomic calculation. Therefore, we shall have an incorrect, deeper molecular binding energy, unless we readjust the atomic total energy by adding the 3s orbital to the original basis set. Some examples are shown in the case of Cu2 molecule, where we have found that the correction is quite appreciable, which was overlooked in previous work.
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  • 77
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    Journal of Computational Chemistry 2 (1981), S. 108-125 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Compact contracted Gaussian basis sets introduced in the preceding article are tested for ab initio molecular calculations on molecules containing third-row atoms (Na through Cl). It is found that the effect of splitting valence orbitals is essential for these molecules and addition of polarization functions to split basis sets can yield computed geometries, spectroscopic constants, and atomization energies in close agreement with the result of near Hartree-Fock calculations.
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    Journal of Computational Chemistry 2 (1981), S. 157-160 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: A new method is presented for the calculation of partition coefficients of solutes in water lipid systems. Log P values are calculated based on the charge densities of the atoms as determined by quantum mechanical methods. In this article, the results have been obtained from charge densities calculated by two methods: MINDO/3 and Hückel-type calculation based primarily on topology. Results are favorably compared with those obtained by fragment analysis.
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  • 79
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    Journal of Computational Chemistry 2 (1981), S. 177-181 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The empirical potential EPEN/2 has been used to establish the structures of isolated hydrogen-bonding ammonia clusters. The most stable forms of the dimer have a linear or near-linear structure. The trimer has a closed structure with zero dipole moment. Two stable tetramer forms were found: one with a closed structure and zero dipole moment in agreement with experimental findings, and one with a pyramidal structure with nonzero dipole moment which may be an artifact of the EPEN/2 potential. The relation of the dimer structures to the limited available experimental information is discussed.
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  • 80
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Hydrogen bonding of uracil with water in excited n → π* states has been investigated by means of ab initio SCF-CI calculations on uracil and water-uracil complexes. Two low-energy excited states arise from n → π* transitions in uracil. The first is due to excitation of the C4—O group, while the second is associated with excitation of the C2—O group. In the first n → π* state, hydrogen bonds at O4 are broken, so that the open water-uracil dimer at O4 dissociates. The “wobble” dimer, in which a water molecule is essentially free to move between its position in an open structure at N3—H and a cyclic structure at N3—H and O4 in the ground state, collapses to a different “wobble” dimer at N3—H and O2 in the excited state. The third dimer, a “wobble” dimer at N1—H and O2, remains intact, but is destabilized relative to the ground state. Although hydrogen bonds at O2 are broken in the second n → π* state, the three water-uracil dimers remain bound. The “wobble” dimer at N1—H and O2 changes to an excited open dimer at N1—H. The “wobble” dimer at N3—H and O4 remains intact, and the open dimer at O4 is further stabilized upon excitation. Dimer blue shifts of n → π* bands are nearly additive in 2:1 and 3:1 water:uracil structures. The fates of the three 2:1 water:uracil trimers and the 3:1 water:uracil tetramer in the first and second n → π* states are determined by the fates of the corresponding excited dimers in these states.
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  • 81
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Ab initio calculations with a minimal (STO-3G) basis set on a number of sulfur-containing molecules are used to show that Koopmans' theorem and minimal basis calculations may be a simple but adequate way of obtaining inner-shell ionization potentials and chemical shifts of large molecules. The x-ray photoelectron spectrum of (C6H5)2SNSO2C6H4CH3 is discussed with reference to an ab initio SCF minimal basis calculation on the model molecule H2SNSO2H.
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  • 82
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    Journal of Computational Chemistry 2 (1981), S. 225-230 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Ab initio molecular orbital (MO) calculations for two series of sulfur-oxygen compounds are reported: the S(IV) system of SO2, H2SO3, HSO3-, and SO32-, and the S(VI) system of SO3, H2SO4, HSO4-, and SO42-. Geometries about the sulfur atoms were optimized using the STO-3G* basis set; energies at these geometries were computed by the STO-3G and 44-31G basis sets both with and without five Gaussian d orbitals on S. The sulfur-oxygen bond lengths and the angles about the central atoms agree fairly well with experiment. The stabilization energy associated with the addition of the d orbitals was found to be a constant amount per bond (ca. 54 and 28 kcal mole-1 in the minimal and extended bases, respectively) in hypervalent compounds. The isomer HSO3- was predicted to be more stable than SO2(OH)-, but the reverse was true for HSO2(OH) compared to SO(OH)2. The deprotonation energies for the acids and the hydration energies for the oxides also were computed and discussed with reference to experimental data.
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  • 83
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    Journal of Computational Chemistry 2 (1981), S. 261-265 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Ab initio molecular orbital calculations are reported for H2S, its radical cation, and the H2SSH2+ radical cation. At the MP2/4-31G level the S—S three-electron bond is 2.85 Å long, and has a dissociation energy of 31.2 kcal mole-1. The performance of MNDO semiempirical molecular orbital theory is compared with the ab initio results.
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  • 84
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    Journal of Computational Chemistry 2 (1981), S. 266-272 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Significant improvements in calculational efficiency and capability with the self-consistent electron pairs (SCEP) method has resulted from several new computational developments. A new procedure for constructing the important internal Coulomb and exchange operators has substantially reduced the preiteration time. A general scheme for utilizing molecular symmetry has been used to advantage in reducing the number of pair functions and external operators that must be found explicitly at each iteration. A projection operator tool has been implemented and found to be quite effective at minimizing the number of iterations required at some point on a potential energy surface when an SCEP wavefunction exists for some nearby point. These and other improvements in the program construction have yielded sizable reductions in time for some representative test cases, including water and a potential energy curve for formaldehyde. The new SCEP program also performs low-order perturbation theory treatments and coupled electron pair approximation (CEPA) calculations using the same operator approach. The usefulness of the approach is demonstrated by very large scale calculations on the stability of the two interstellar glycine conformers. These calculations involve the variational treatment of 82,205 symmetry-adapted singly and doubly substituted configurations involving 225 internal electron pairs.
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  • 85
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    Journal of Computational Chemistry 2 (1981), S. 347-355 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The molecular spin-orbit coupling operator is brought into a simplified form through a convenient choice of origin for the orbital angular momentum operator. The eigenvalue problem of the Hamiltonian that includes the spin-orbit (SOC) operator as a perturbation is solved by means of a linear variational procedure in the basis of the spin-pure molecular eigenstates. Test calculations on benzophenone are presented and the results are compared to experiment. We discuss the minimal size of the spin-pure variational basis needed to achieve stable results as well as the amount of single-excitation configurational mixing needed to describe the spin-pure molecular eigenstates.
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  • 86
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    Journal of Computational Chemistry 2 (1981) 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
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  • 87
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Ab initio molecular orbital calculations are reported for complexes of hydroxide and methoxide anions with water and methanol. The basis set dependence of the results is carefully considered for HO- ⃛ H2O. 4-31G and 6-31G* calculations yield similar geometrical predictions; however, the 6-31G* basis set is superior for computing dissociation energies. Further extension to the 6-31G** level provides little change. The dissociation energies for the complexes range from 25 to 37 kcal/mole with hydroxide ion and methanol acting as the strongest base and acid. The difference in gas phase acidities of water and methanol is halved by the introduction of one solvent molecule.
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  • 88
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    Journal of Computational Chemistry 2 (1981), S. 20-29 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Ab initio molecular orbital structures and energies of B2F4, B2Cl4, N2O4, and C2O42- have been calculated for both perpendicular D2d and planar D2h rotamers. The experimental trend toward greater preference for the D2d forms in going from B2F4 to B2Cl4 is reproduced. N2O4 favors the planar conformation, although the rotation barrier is overestimated at the theoretical levels used. The oxalate dianion is calculated to be more stable in the D2d conformation; the experimental planar arrangement in the solid may be due to crystal packing forces. The preferences for one conformation over another are small; analysis indicates that different effects may predominate in each case: π stabilization for B2F4, hyperconjugation for B2Cl4, lone-pair interactions for N2O4, and electrostatic repulsions for C2O42-.
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  • 89
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Means by which the Onsager theory of dielectrics may be modified in a general way to include important structurally nonspecific electrical effects exercised at or near the cavity boundary are developed and discussed. In essence they rely upon extraction of limiting numerical solutions of the Laplace equation potentials for multiple shells approximating regions of smoothly varying permittivity surrounding the dipole-containing cavity. The results of several such modifications, which usefully retain the original reaction and cavity field forms, are applied to evaluate the dielectric constants of polar solvents acting as support media for mean-space-charge attenuation of intracavity electrical interactions, and in correlation of isolated molecule and condensed phase properties of formally nonassociated solvents. For the most part such predictions and correlations are found to be improved by a wide variety of physically reasonable continuity functions. Where they are not, more rational patterns of deviations consistent with possible modes of intramolecular charge transfer and weak intermolecular association in formally nonassociated liquids are detected. Some limited comparisons with particle- and structure-dependent theories, e.g., the mean spherical model and discrete lattice formulations, also suggest that the present permittivity modifications can effectively simulate important short-range nonspecific liquid ordering effects. Various factors relating to possible adaption of the limit procedures developed to other inhomogeneous dielectric medium calculations are also briefly outlined.
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  • 90
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    Journal of Computational Chemistry 2 (1981), S. 363-367 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: SCF Hartree-Fock calculations are used to predict properties of the guanidinium fragment present in tetrodotoxin and saxitoxin, toxins known to block the sodium channels of the nerve cell membrane. The results, in terms of net atomic charges and geometries, are compared to similar calculation results obtained for the Na+-H2O complex.
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  • 91
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    Journal of Computational Chemistry 2 (1981), S. 384-391 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: With a view of using data on solutions and liquids for parameter fitting in molecular mechanical force fields, Abraham's theory of solvation is incorporated in the force field procedure. Geometries and bond moments are estimated internally, partial account being taken of bond-bond induction, and used to calculate the intramolecular electrostatic energy, dipole moment, and the dipole and quadrupole terms in the solvation energy. Three dielectric constants are used, one for the solute in the vapor, one for the solution, and one for the intramolecular space through which dipole-dipole interactions take place. Examples are given, including such where computation differs with measurement, to illustrate the performance of the scheme.
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  • 92
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    Journal of Computational Chemistry 2 (1981), S. 414-415 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The energy hypersurface for the system Li(H2O)4+-F(H2O)4- is investigated using the polarization model. A possible mechanism for the production of HF in this solution droplet is observed.
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  • 93
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    Journal of Computational Chemistry 2 (1981), S. 433-445 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Parametrization of MNDO for aluminum and comparisons of calculated molecular properties with experimental values indicate the general usefulness of MNDO to study aluminum-containing compounds. Although results are not as good as for molecules containing only C, H, N, and O, they are nevertheless accurate enough to be useful, especially when predictive biases noted in this article are considered. Inclusion of the d orbital in the MNDO scheme may improve the aluminum results. Results for boron-containing molecules not previously reported are also reported in this article.
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  • 94
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: Ab initio molecular orbital theory with the STO-3G basis set is used to examine both charge and energy interactions in a series of meta- and para-substituted phenylborate anions and toluenes. Comparison of the results is made with data for substituted anilinium cations. It is concluded that whereas NH3+ is a powerful σ acceptor, with essentially no π interaction, BH3- is primarily a π donor, and, to a slight extent only, a π donor. CH3 is indicated to be both a weak σ and π donor. Energies of interaction of BH3- and NH3+ with a series of substituents are an order of magnitude larger than corresponding values for CH3. Interaction energies for BH3- are of opposite sign to those for NH3+. The results may be understood qualitatively using perturbation molecular orbital (PMO) theory.
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  • 95
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    Journal of Computational Chemistry 2 (1981) 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
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  • 96
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    Journal of Computational Chemistry 2 (1981), S. 12-13 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The CN stretching frequencies in amides have been predicted satisfactorily by the CNDO/2 method. The large variation in ΔE is explained on the basis of extent of resonance in amides.
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  • 97
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    Journal of Computational Chemistry 2 (1981), S. 38-40 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The first calculation of a molecule, N2, by the SCF-Xα-SW method using the theoretically derived parameter αta is reported.
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  • 98
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    Journal of Computational Chemistry 2 (1981), S. 368-375 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: An approximate analytic expression is derived, based on a novel model for the reactive-diffusive processes in a electrochemiluminescence (ecl) experiment. The physical system treated is one in which ecl is produced by stepping the voltage of a planar electrode to the diffusion-limited reduction value for an emitter species in the presence of a bulk oxidant precursor (9,10-DPA with benzoyl peroxide). The unknown rate constants are determined by a least-squares curve-fitting computer code. The model, though crude, provides an excellent fit to the ecl intensity versus time data, including the rise portion of the curve.
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  • 99
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    Journal of Computational Chemistry 2 (1981), S. 392-401 
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The all-valence-electron CNDO/2 calculations were performed for the three isomeric nitrophenols. Using the newly derived σ-core charges and subsequently revising the valence-state ionization potentials and one-center two-electron repulsion integrals, Pariser-Parr-Pople (PPP) CI calculations were performed on the title compounds following the Nishimoto-Forster scheme. A better agreement between theory and experiment has been observed in spectral assignments compared to the conventional PPP approach. Information from the CNDO/2 calculations was used to obtain useful electronic structural parameters and to get a quantitative insight into the chemical reactivity of these molecules. All the results were compared with the basic compounds, phenol and nitrobenzene. The electronic spectra of these isomers were recorded in both polar and nonpolar solvents.
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  • 100
    ISSN: 0192-8651
    Keywords: Computational Chemistry and Molecular Modeling ; Biochemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Computer Science
    Notes: The structures of four conformations of the methyl ester of glycine were determined by standard single-determinant molecular orbital (MO) calculations using Pulay's force method and the 4-21G basis set. The most stable conformation of this compound has a symmetry plane which contains all the heavy atoms; it is stabilized by hydrogen bonds between the NH2 group and the carbonyl oxygen; it corresponds to the most stable, stretched form of free glycine. The structural parameters in the different conformations can vary significantly (bond distance by more than 0.02 Å and bond angles by up to 15°). The structural changes which are caused in glycine by esterification are discussed and some of them are interpreted in terms of hyperconjugative π-electron delocalization.
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