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  • Springer  (140,388)
  • Springer Nature  (65,135)
  • Public Library of Science  (17,840)
  • 2015-2019  (177,173)
  • 1985-1989
  • 1980-1984  (46,190)
  • 2019  (177,173)
  • 1980  (46,190)
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  • 2015-2019  (177,173)
  • 1985-1989
  • 1980-1984  (46,190)
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  • 1
    Publication Date: 2020-10-22
    Description: The storage concession "Minerbio Stoccaggio" (Bologna, Northern Italy) covers a 69 km 2 area, 65% of hich is located in the Minerbio municipality. Since 1979, a microseismic network for the monitoring of seismicity, eventually induced by gas storage activities, has been installed in this area. The network was operated by Stogit S.p.A, a subsidiary company of Snam, which is the largest storage operator in Italy. In 2016, the microseismic network, consisting of three surface stations and one 100-m-deep borehole sensor with minimum interstation distances of about 3.0 km, was integrated with 12 regional stations installed in an 80 × 80 km 2 area centered on the surface projection of the reservoir. In 2018, the microseismic network was enhanced by adding one surface and three 150-m-deep borehole stations. In this work, we evaluate the detection improvement of the microseismic network, integrated with the regional stations. We define two crustal volumes for earthquake detection: the inner domain of detection, IDD (10 × 10 × 5) km 3 , within which we should ensure the highest network performance, and the extended domain of detection, EDD (22 × 22 × 11) km 3 . By comparing the simulated power spectral density of hypothetical seismic sources located in EDD with the average power spectra of ambient seismic noise observed at each station site, we calculate detection and localization thresholds for the two above-mentioned networks. Under unfavourable noise conditions, we find that the present operative seismic network allows locating earthquakes with M L ≥ 0.8 occurring at the depth of the reservoir and with M L ≥ 1.0 if located within IDD.
    Description: Funding information This study received financial support from BComune di Minerbio^ under the grant BSperimentazione ILG Minerbio^ (grant number 0913.010)
    Description: Published
    Description: 967–977
    Description: 3SR TERREMOTI - Attività dei Centri
    Description: JCR Journal
    Keywords: Induced seismicity ; Earthquake detection ; Ambient seismic noise ; Microseismic monitoring ; MiSE ; oilfield monitoring guidelines
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 2
    Publication Date: 2020-09-07
    Description: This paper presents an original multidisciplinary (geological-structural-geomorphological and seismological) study aimed at investigating the origin of diffused seismic damages affecting several ancient buildings in the Roman port city of Ostia. We also evaluate the possibility to relate these damages to a previously hypothesized ENE-WSW trending fault, bordering the morphological height upon which the Ostia town was founded. Aimed at this scope, we performed seismic noise measures (by using 14 seismic stations) that show no significantly different response and lack of significant ground motion differential amplifications. The coexistence of (i) no local geological heterogeneities and (ii) low amplification of spectral ratios in the recorded seismic signals seems to exclude that the observed seismic damage may be the consequence of significant site effects. When also the large distance from the strongest Apennine’s seismogenic source areas is considered, the possibility that the observed damage may be the consequence of local events should be considered. We discuss the potentiality of the ENE-WSW trending fault as the source of the observed seismic damages, highlighting the supporting evidence as well as the uncertainties of such interpretation.
    Description: Published
    Description: 833–851
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 3
    Publication Date: 2020-09-07
    Description: This work describes the analysis of the strong-motion data from the Engineering Strong Motion database (ESM, http://esm.mi.ingv.it), aimed at: (1) extract a dataset of accelero- metric waveforms recorded during the 2016–2017 Central Italy seismic sequence; (2) iden- tify the recording stations to be used as reference sites for further seismological analysis; (3) select the records to be used as input for seismic microzonation of higher level at 137 municipalities. Firstly, a residual analysis is carried out on the extracted dataset to perform: (1) the quality check of the waveforms recorded by temporary networks installed soon after the occurrence of the rst main shock (M 6.0, 24 August 2016); (2) the estimation of the site-to-site residual term for each recording station with the aim of recognising potential reference rock sites. Finally, the software REXELite, integrated within the ESM website, is adopted to select suites of spectrum-compatible accelerograms, that will be used as input for calculating site ampli cations through 1D and 2D simulations at sites which suf- fered the greatest damage. The results of this work demonstrate the success of the synergy among Italian institutions. The setup of key infrastructures, such as emergency networks and data repositories, together with the knowledge developed during national projects, turned out to be successful in terms of timely intervention during the emergency phase and the planning of the post-emergency.
    Description: Published
    Description: 5533–5551
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 4
    Publication Date: 2019-04-10
    Description: Our knowledge on distribution, habitats and behavior of Southern Ocean fishes living at water depths beyond scuba-diving limits is still sparse, as it is difficult to obtain quantitative data on these aspects of their biology. Here, we report the results of an analysis of seabed images to investigate species composition, behavior, spatial distribution and preferred habitats of demersal fish assemblages in the southern Weddell Sea. Our study was based on a total of 2736 high-resolution images, covering a total seabed area of 11,317 m2, which were taken at 13 stations at water depths between 200 and 750 m. Fish were found in 380 images. A total of 379 notothenioid specimens were recorded, representing four families (Nototheniidae, Artedidraconidae, Bathydraconidae, Channichthyidae), 17 genera and 25 species. Nototheniidae was the most speciose fam- ily, including benthic species (Trematomus spp.) and the pelagic species Pleuragramma antarctica, which was occasionally recorded in dense shoals. Bathydraconids ranked second with six species, followed by artedidraconids and channichthyids, both with five species. Most abundant species were Trematomus scotti and T. lepidorhinus among nototheniids, and Dol- loidraco longedorsalis and Pagetopsis maculatus among artedidraconids and channichthyids, respectively. Both T. lepi- dorhinus and P. maculatus preferred seabed habitats characterized by biogenous debris and rich epibenthic fauna, whereas T. scotti and D. longedorsalis were frequently seen resting on fine sediments and scattered gravel. Several fish species were recorded to make use of the three-dimensional structure formed by epibenthic foundation species, like sponges, for perching or hiding inside. Nesting behavior was observed, frequently in association with dropstones, in species from various families, including Channichthyidae (Chaenodraco wilsoni and Pagetopsis macropterus) and Bathydraconidae (Cygnodraco mawsoni).
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 5
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    Springer
    In:  EPIC3The Ecosystem of Kongsfjorden, Svalbard, The Ecosystem of Kongsfjorden, Svalbard, Cham, Springer, 566 p., pp. 537-562, ISBN: 978-3-319-46425-1
    Publication Date: 2020-07-08
    Description: Due to its year-round accessibility and excellent on-site infrastructure, Kongsfjorden and the Ny-Ålesund Research and Monitoring Facility have become established as a primary location to study the impact of environmental change on Arctic coastal ecosystems. Due to its location right at the interface of Arctic and Atlantic oceanic regimes, Kongsfjorden already experiences large amplitudes of variability in physico/chemical conditions and might, thus, be considered as an early warning indicator of future changes, which can then be extrapolated in a pan-Arctic perspective. Already now, Kongsfjorden represents one of the best-studied Arctic fjord systems. However, research conducted to date has concentrated largely on small disciplinary projects, prompting the need for a higher level of integration of future research activities. This contribution, thus, aims at identifying gaps in knowledge and research priorities with respect to ecological and adaptive responses to Arctic ecosystem changes. By doing so we aim to provide a stimulus for the initiation of new international and interdisciplinary research initiatives.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
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  • 6
    Publication Date: 2019-11-26
    Description: Modern Society needs interactive public discussion to provide an effective way of focusing on hydrological hazards and their consequences. Embracing a holistic Earth system Science approach, we experiment since 2004 different stimulating educational/communicative model which emotionally involves the participants to raise awareness on the social dimension of the disaster hydrogeological risk reduction, pointing out that human behavior is the crucial factor in the degree of vulnerability and the likelihood of disasters taking place. The implementation of strategies for risk mitigation must include educational aspects, as well as economical and societal ones. Education is the bridge between knowledge and understanding and the key to raise risk perception. Children’s involvement might trigger a chain reaction that reinforce and spread the culture of risk. No matter how heavy was the rain that hit our land in the past and recent seasons, we still are not prepared. If on one hand we need to fight against worsening Global Warming that trigger extreme meteorological events, we should also work on sustainable land use and promote landscape preservation. Since science can work on improving knowledge of phenomena, technology can provide modern tool to reduce the impact of disasters, children and adults education is the flywheel to provide the change. We present here two cases selected among the wide range of educational activities that we have tested and to which more than 2,000 students and adults have participated within a period of 12 years. They include learn-by-playing, hands-on, emotional-learning activities, open questions seminars, learning paths, curiosity-driven approaches, special venues and science outreach.
    Description: Sendai Partnerships 2015-2025
    Description: Published
    Description: Ljubljana (Slovenia)
    Description: 2TM. Divulgazione Scientifica
    Keywords: Natural hazard ; Hydrogeological risk ; Prevention ; Participatory approach ; Awareness raising ; Resilience ; Hydrogeological Risk prevention
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: Conference paper
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  • 7
    Publication Date: 2020-03-23
    Description: The systematic study of biological basis of behavior and of the process involved in economical choices has outlined a new paradigm of research: neuroeconomics. Now the intersection between neuroscience, psychology and economics, neuroeconomics presents itself as an alternative to the neoclassical vision on economics, according to which the homo oeconomicus acts within the bonds of a formalizing rationality tending to the maximization of the anticipated utility. Brain imagining methods have shown that the decision-making processes activate the frontal lobe and the limbic system above all, a big circonvolution running through the callous body on the medial surface of the hemispheres, extending itself down, responsible for the regulation of emotional phenomena. Reinforcing such a tendency, we find the injury paradigm. It was observed that frontal lobe injuries harm the capacity of making advantageous decisions either in one’s own behalf or in others, as well as decisions according to the social conventions. In this paper, we will try to show that if, by the one hand, the neuro visual methods have given us a great amount of data, on the other hand, using them uncritically, with the recurrent confusion between “correlation” and “causal relation”—contemporary microevents indicate only simple correlations, and no cause-effect relation—risks to stress the relevant explanatory gap regarding the abstract ideal of understanding the nature of the brain.
    Description: Published
    Description: 135-141
    Description: 2TM. Divulgazione Scientifica
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 8
    Publication Date: 2019-03-11
    Description: This paper investigates whether and how depressive disorders affect speech and in particular timing strategies for speech pauses (empty and filled pauses, as well as, phoneme lengthening). The investigation is made exploiting read and spontaneous narratives . The collected data are from 24 subjects, divided into two groups (depressed and control) asked to read a tale, as well as, spontaneously report on their daily activities. Ten different frequency and duration measures for pauses and clauses are proposed and have been collected using the PRAAT software on the speech recordings produced by the participants. A T-Student test for independent samples was applied on the collected frequency and duration measures in order to ascertain whether significant differences between healthy and depressed speech measures are observed. In the “spontaneous narrative” condition, depressed patients exhibited significant differences in: the average duration of their empty pauses, the average frequency, and the average duration of their clauses. In the read narratives, only the average pause’s frequency of the clauses was significantly lower in the depressed subjects with respect to the healthy ones. The results suggest that depressive disorders affect speech quality and speech production through pause and clause durations, as well as, clause quantities. In particular, the significant differences in clause quantities (observed both in the read and spontaneous narratives), suggest a strong general effect of depressive symptoms on cognitive and psychomotor functions. Depressive symptoms produce changes in the planned timing of pauses, even when reading, modifying the timing of pausing strategies.
    Description: Published
    Description: 73-82
    Description: 5TM. Informazione ed editoria
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 9
    Publication Date: 2019-04-01
    Description: t The role of riverine freshwater inflow on the Central Mediterranean Overturning Circulation (CMOC) was studied using a high-resolution ocean model with a complete distribution of rivers in the Adriatic and Ionian catchment areas. The impact of river runoff on the Adriatic and Ionian Sea basins was assessed by a twin experiment, with and without runoff, from 1999 to 2012. This study tries to show the connection between the Adriatic as a marginal sea containing the downwelling branch of the anti-estuarine CMOC and the large runoff occurring there. It is found that the multiannual CMOC is a persistent anti-estuarine structure with secondary estuarine cells that strengthen in years of large realistic river runoff. The CMOC is demonstrated to be controlled by wind forcing at least as much as by buoyancy fluxes. It is found that river runoff affects the CMOC strength, enhancing the amplitude of the secondary estuarine cells and reducing the intensity of the dominant anti-estuarine cell. A large river runoff can produce a positive buoyancy flux without switching off the antiestuarine CMOC cell, but a particularly low heat flux and wind work with normal river runoff can reverse it. Overall by comparing experiments with, without and with unrealistically augmented runoff we demonstrate that rivers affect the CMOC strength but they can never represent its dominant forcing mechanism and the potential role of river runoff has to be considered jointly with wind work and heat flux, as they largely contribute to the energy budget of the basin. Looking at the downwelling branch of the CMOC in the Adriatic basin, rivers are demonstrated to locally reduce the volume of Adriatic dense water formed in the Southern Adriatic Sea as a result of increased water stratification. The spreading of the Adriatic dense water into the Ionian abyss is affected as well: dense waters overflowing the Otranto Strait are less dense in a realistic runoff regime, with respect to no runoff experiment, and confined to a narrower band against the Italian shelf with less lateral spreading toward the Ionian Sea center. 1
    Description: Published
    Description: 1675-1703
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 10
    Publication Date: 2019-03-11
    Description: Humans have very high requirements and expectations when communicating through speech, other than simplicity, flexibility and easiness of interaction. This is because voice interactions do not require cognitive efforts, attention, and memory resources. Voice technologies are however still constrained to use cases and scenarios giving the existing limitations of speech synthesis and recognition systems. Which is the status of nonlinear speech processing techniques and the steps made for cross-fertilization among disciplines? This chapter will provide a short overview trying to answer the above question.
    Description: Published
    Description: 5-11
    Description: 5TM. Informazione ed editoria
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 11
    Publication Date: 2019-12-09
    Description: Since the past decade, geodetic techniques are widely used to gain important information for the monitoring and modeling of the deformation of the Earth at different length and time scales. Although the GNSS derived estimates of the Earth crust velocity are becoming more and more reliable, advanced data analysis techniques are needed to recognize geophysical features in the GNSS time-series, e.g., non linear behaviors, discontinuities in the signal and in its derivative, i.e., in the velocity. Unfortunately these phenomena are often hidden in the time-series noise and external information, as seismic events, are not always known. The main focus of this work is the detection of signal discontinuities in GNSS time-series through the use of advanced analysis techniques: the wavelets, the Bayesian and the variational methods. The Mumford and Shah (Commun Pure Appl Math 42:577–685, 1989) and the Blake and Zisserman (Visual reconstruction, 1987) variational models for signal segmentation can detect signal discontinuities in an explicitly way. The Blake and Zisserman (Visual reconstruction, 1987) model can also detect discontinuities of the signal first derivative, i.e., velocity abrupt changes can be detected. At first, to prove and assess the capability to detect discontinuities correctly, the methods have been applied to some Cascadia (North America) time-series, characterized by well known aseismic deformations. A second test area has been taken into account: the Calabrian Arc subduction zone, in southern Italy. The analyzed Italian GNSS time-series are characterized by very weak and noisy signals and the geodynamic of the area is mostly unknown. When present, discontinuities are expected to be very small and compatible with the signal noise. This motivates the use of advanced data analysis techniques to investigate the presence of discontinuities. At the moment, the analysis of the Italian time-series has revealed several discontinuities which nature cannot be labeled easily as geophysical or geodetic.
    Description: Published
    Description: 627-634
    Description: 2T. Deformazione crostale attiva
    Keywords: Subduction Zone ; Discontinuity point ; Slow slip event ; signal discontinuity ; Cascadia Subduciton zone
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 12
    Publication Date: 2019-12-02
    Description: Algorithms based on artificial intelligence (AI) have had a strong development in recent years in different research fields of earth science such as seismology and volcanology. In particular, they have been applied to the study of the volcanic eruptive products of the recent activity of Mount Etna volcano. This work presents an application of the self-organizing map (SOM) neural networks to perform a clustering analysis on petrographic patterns of rocks of Somma–Vesuvius and Campi Flegrei volcanoes, in the Neapolitan area. The goal is to highlight possible affinity between the magmatic reservoirs of these two volcanic complexes. The SOM is known for its ability to cluster data by using intrinsic similarity measures without any previous information about their distribution. Moreover, it allows an easy understandable data visualization by using a two-dimensional map. The SOM has been tested on a geochemical dataset of 271 samples, consisting of 134 samples of Campi Flegrei eruptions (named CF), 24 samples of Somma–Vesuvius effusive eruptions (VF), 73 samples of Somma–Vesuvius explosive eruptions (VX), and finally 40 samples of “foreign” eruptions (ET), included to verify the neural net classification capability. After a pre-processing phase, applied to have a more appropriate data representation as input for the SOM, each sample has been encoded through a vector of 23 features, containing information about major bulk components, trace elements, and Sr isotopic ratio. The resulting SOM identifies three main clusters, and in particular, the foreign patterns (ET) are well separated from the other ones being mainly grouped in a single node. In conclusion, the obtained results suggest the ability of SOM neural network to associate volcanic rock suites on the basis of their geochemical imprint and can be consistent with the hypothesis that there might be a common magma source beneath the whole Neapolitan area.
    Description: Published
    Description: 55-60
    Description: 3V. Proprietà chimico-fisiche dei magmi e dei prodotti vulcanici
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 13
    Publication Date: 2020-03-23
    Description: This paper investigates the ability of adolescents (aged 13–15 years) and young adults (aged 20–26 years) to decode affective bursts culturally situated in a different context (Francophone vs. South Italian). The effects of context show that Italian subjects perform poorly with respect to the Francophone ones revealing a significant native speaker advantage in decoding the selected affective bursts. In addition, adolescents perform better than young adults, particularly in the decoding and intensity ratings of affective bursts of happiness, pain, and pleasure suggesting an effect of age related to language expertise.
    Description: Published
    Description: 1TM. Formazione
    Keywords: Affective bursts ; Age and cultural effects
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 14
    Publication Date: 2021-02-16
    Description: The deglacial history of CO2 release from the deep North Pacific remains unresolved. This is due to conflicting indications about subarctic Pacific ventilation changes based on various marine proxies, especially for Heinrich Stadial 1 (HS-1) when a rapid atmospheric CO2 rise occurs. Here, we use a complex Earth System Model to investigate the deglacial North Pacific overturning and its control on ocean stratification. Our results show an enhanced intermediate-to-deep ocean stratification coeval with intensified North Pacific Intermediate Water (NPIW) formation during HS-1, compared to the Last Glacial Maximum. The stronger NPIW formation causes lower salinities and higher temperatures at intermediate depths. By lowering NPIW densities, this enlarges vertical density gradient and thus enhances intermediate-to-deep ocean stratification during HS-1. Physically, this process prevents the North Pacific deep waters from a better communication with the upper oceans, thus prolongs the existing isolation of glacial Pacific abyssal carbons during HS-1.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 15
    Publication Date: 2019-03-04
    Description: Many marine gastropods show species-specific behavioral responses to different predators, but less is known about the mechanisms influencing differences or similarities in specific responses. Herein, we examined whether two limpet species, Scurria viridula (Lamarck, 1819) and Fissurella latimarginata (Sowerby, 1835), show species- and size-specific similarities or differences in their reaction to predatory seastars and crabs. Both S. viridula and F. latimarginata reacted to their main seastar predators with escape responses. In contrast, both limpets did not flee from common crab predators, but, instead, fastened to the rock. All tested size classes of both limpet species reacted in a similar way, escaping from seastars, but clamping onto the rock in response to crabs. Limpets could reach velocities sufficient to outrun their specific seastar predators, but they were not fast enough to escape crabs. Experiments with limpets of different shell conditions (with and without shell damage) indicated that F. latimarginata with a damaged shell showed “accommodation movements” (slow movements away from stimulus) in response to predatory crabs. In contrast, intact F. latimarginata and all S. viridula (intact and damaged) clamped the shell down to the substratum. The response details suggest that the keyhole limpet F. latimarginata is more sensitive to predators (faster reaction time, longer escape distances, and higher proportion of reacting individuals) than S. viridula, possibly because the morphology of F. latimarginata (the relationship of its shell size and structure to its total body size) makes this species more vulnerable to predation. Our study suggests that chemically mediated effects of seastar and crab predators result in contrasting behavioral responses of both limpet species, independent of their habitat and morphology. Despite the different characteristics of the limpet species and the identity of predators, the limpets react in comparable ways to similar predator types.
    Repository Name: EPIC Alfred Wegener Institut
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  • 16
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    Springer Nature
    In:  EPIC3Magnetic Resonance Materials in Physics, Biology and Medicine, Springer Nature, ISSN: 1352-8661
    Publication Date: 2019-05-27
    Description: An approach is presented for high-field MRI studies of the cardiovascular system (CVS) of a marine crustacean, the edible crab Cancer pagurus, submerged in highly conductive seawater. Structure and function of the CVS were investigated at 9.4 T. Cardiac motion was studied using self-gated CINE MRI. Imaging protocols and radio-frequency coil arrangements were tested for anatomical imaging. Haemolymph flow was quantified using phase-contrast angiography. Signal-to-noise-ratios and flow velocities in afferent and efferent branchial veins were compared with Student’s t test (n = 5). Seawater induced signal losses were dependent on imaging protocols and RF coil setup. Internal cardiac structures could be visualized with high spatial resolution within 8 min using a gradient-echo technique. Variations in haemolymph flow in different vessels could be determined over time. Maximum flow was similar within individual vessels and corresponded to literature values from Doppler measurements. Heart contractions were more pronounced in lateral and dorso-ventral directions than in the anterior–posterior direction. Choosing adequate imaging protocols in combination with a specific RF coil arrangement allows to monitor various parts of the crustacean CVS with exceptionally high spatial resolution despite the adverse effects of seawater at 9.4 T.
    Repository Name: EPIC Alfred Wegener Institut
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  • 17
    Publication Date: 2022-05-25
    Description: © The Authors, 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Rogers, K. L., Bosman, S. H., Lardie-Gaylord, M., McNichol, A., Rosenheim, B. E., Montoya, J. P., & Chanton, J. P. (2019). Petrocarbon evolution: Ramped pyrolysis/oxidation and isotopic studies of contaminated oil sediments from the Deepwater Horizon oil spill in the Gulf of Mexico. PLoS One, 14(2), (2019):e0212433, doi:10.1371/journal.pone.0212433.
    Description: Hydrocarbons released during the Deepwater Horizon (DWH) oil spill weathered due to exposure to oxygen, light, and microbes. During weathering, the hydrocarbons’ reactivity and lability was altered, but it remained identifiable as “petrocarbon” due to its retention of the distinctive isotope signatures (14C and 13C) of petroleum. Relative to the initial estimates of the quantity of oil-residue deposited in Gulf sediments based on 2010–2011 data, the overall coverage and quantity of the fossil carbon on the seafloor has been attenuated. To analyze recovery of oil contaminated deep-sea sediments in the northern Gulf of Mexico we tracked the carbon isotopic composition (13C and 14C, radiocarbon) of bulk sedimentary organic carbon through time at 4 sites. Using ramped pyrolysis/oxidation, we determined the thermochemical stability of sediment organic matter at 5 sites, two of these in time series. There were clear differences between crude oil (which decomposed at a lower temperature during ramped oxidation), natural hydrocarbon seep sediment (decomposing at a higher temperature; Δ14C = -912‰) and our control site (decomposing at a moderate temperature; Δ14C = -189‰), in both the stability (ability to withstand ramped temperatures in oxic conditions) and carbon isotope signatures. We observed recovery toward our control site bulk Δ14C composition at sites further from the wellhead in ~4 years, whereas sites in closer proximity had longer recovery times. The thermographs also indicated temporal changes in the composition of contaminated sediment, with shifts towards higher temperature CO2 evolution over time at a site near the wellhead, and loss of higher temperature CO2 peaks at a more distant site.
    Description: This research was made possible by grants from The Gulf of Mexico Research Initiative through its consortiums: Ecosystem Impacts of Oil & Gas Inputs to the Gulf (ECOGIG), The Center for the Integrated Modeling and Analysis of the Gulf Ecosystem (C-Image), and Deep Sea to Coast Connectivity in the Eastern Gulf of Mexico (Deep-C) and the Resuspension, Redistribution and Deposition of DWH Recalcitrant Material (Re-Direct) project. This is ECOGIG Contribution # 521. Funding was also provided by the National Ocean Sciences Accelerator Mass Spectrometry Facility (NOSAMS) Graduate Student Internship Program (NSF OCE-1239667). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 18
    Publication Date: 2022-05-25
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 14(1), (2019):e0204193, doi: 10.1371/journal.pone.0204193.
    Description: The resilience of regeneration in vertebrates is not very well understood. Yet understanding if tissues can regenerate after repeated insults, and identifying limitations, is important for elucidating the underlying mechanisms of tissue plasticity. This is particularly challenging in tissues, such as the nervous system, which possess a large number of terminally differentiated cells and often exhibit limited regeneration in the first place. However, unlike mammals, which exhibit very limited regeneration of spinal cord tissues, many non-mammalian vertebrates, including lampreys, bony fishes, amphibians, and reptiles, regenerate their spinal cords and functionally recover even after a complete spinal cord transection. It is well established that lampreys undergo full functional recovery of swimming behaviors after a single spinal cord transection, which is accompanied by tissue repair at the lesion site, as well as axon and synapse regeneration. Here we begin to explore the resilience of spinal cord regeneration in lampreys after a second spinal transection (re-transection). We report that by all functional and anatomical measures tested, lampreys regenerate after spinal re-transection just as robustly as after single transections. Recovery of swimming, synapse and cytoskeletal distributions, axon regeneration, and neuronal survival were nearly identical after spinal transection or re-transection. Only minor differences in tissue repair at the lesion site were observed in re-transected spinal cords. Thus, regenerative potential in the lamprey spinal cord is largely unaffected by spinal re-transection, indicating a greater persistent regenerative potential than exists in some other highly regenerative models. These findings establish a new path for uncovering pro-regenerative targets that could be deployed in non-regenerative conditions.
    Description: The authors would like to thank Dr. Cristina Roman-Vendrell and Louie Kerr, Director of the Central Microscopy Facility at the MBL, for technical support. We also thank Dr. Juan Diaz-Quiroz for helpful comments on the manuscript. EG was supported in part by an NSF REU Award (#1659604: Biological Discovery in Woods Hole at the Marine Biological Laboratory).
    Repository Name: Woods Hole Open Access Server
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  • 19
    Publication Date: 2022-05-25
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gruen, D. S., Wolfe, J. M., & Fournier, G. P.. Paleozoic diversification of terrestrial chitin-degrading bacterial lineages. BMC Evolutionary Biology, 19, (2019): 34, doi:10.1186/s12862-019-1357-8.
    Description: Background Establishing the divergence times of groups of organisms is a major goal of evolutionary biology. This is especially challenging for microbial lineages due to the near-absence of preserved physical evidence (diagnostic body fossils or geochemical biomarkers). Horizontal gene transfer (HGT) can serve as a temporal scaffold between microbial groups and other fossil-calibrated clades, potentially improving these estimates. Specifically, HGT to or from organisms with fossil-calibrated age estimates can propagate these constraints to additional groups that lack fossils. While HGT is common between lineages, only a small subset of HGT events are potentially informative for dating microbial groups. Results Constrained by published fossil-calibrated studies of fungal evolution, molecular clock analyses show that multiple clades of Bacteria likely acquired chitinase homologs via HGT during the very late Neoproterozoic into the early Paleozoic. These results also show that, following these HGT events, recipient terrestrial bacterial clades likely diversified ~ 300–500 million years ago, consistent with established timescales of arthropod and plant terrestrialization. Conclusions We conclude that these age estimates are broadly consistent with the dispersal of chitinase genes throughout the microbial world in direct response to the evolution and ecological expansion of detrital-chitin producing groups. The convergence of multiple lines of evidence demonstrates the utility of HGT-based dating methods in microbial evolution. The pattern of inheritance of chitinase genes in multiple terrestrial bacterial lineages via HGT processes suggests that these genes, and possibly other genes encoding substrate-specific enzymes, can serve as a “standard candle” for dating microbial lineages across the Tree of Life.
    Description: This work was supported by a National Science Foundation (NSF) Graduate Research Fellowship Program Award to DSG., and Simons Collaboration on the Origins of Life Award #339603 and NSF Integrated Earth Systems Program Award #1615426 to GPF. The funding agencies for this study had no role in study design, data collection, data analysis and interpretation, or in writing the manuscript.
    Keywords: Horizontal gene transfer ; Chitinase ; Chitin ; Bacteria ; Fungi ; Arthropods
    Repository Name: Woods Hole Open Access Server
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  • 20
    Publication Date: 2019-12-02
    Description: Seismological findings show a complex scenario of plume upwellings from a deep thermo-chemical anomaly (superplume) beneath the East African Rift System (EARS). It is unclear if these geophysical observations represent a true picture of the superplume and its influence on magmatism along the EARS. Thus, it is essential to find a geochemical tracer to establish where upwellings are connected to the deep-seated thermo-chemical anomaly. Here we identify a unique non-volatile superplume isotopic signature (‘C’) in the youngest (after 10 Ma) phase of widespread EARS rift-related magmatism where it extends into the Indian Ocean and the Red Sea. This is the first sound evidence that the superplume influences the EARS far from the low seismic velocities in the magma-rich northern half. Our finding shows for the first time that superplume mantle exists beneath the rift the length of Africa from the Red Sea to the Indian Ocean offshore southern Mozambique
    Repository Name: EPIC Alfred Wegener Institut
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  • 21
    Publication Date: 2019-10-23
    Description: Knowledge on basic biological functions of organisms is essential to understand not only the role they play in the ecosystems but also to manage and protect their populations. The study of biological processes, such as growth, reproduction and physiology, which can be approached in situ or by collecting specimens and rearing them in aquaria, is particularly challenging for deep-sea organisms like cold-water corals. Field experimental work and monitoring of deep-sea populations is still a chimera. Only a handful of research institutes or companies has been able to install in situ marine observatories in the Mediterranean Sea or elsewhere, which facilitate a continuous monitoring of deep-sea ecosystems. Hence, today’s best way to obtain basic biological information on these organisms is (1) working with collected samples and analysing them post-mortem and / or (2) cultivating corals in aquaria in order to monitor biological processes and investigate coral behaviour and physiological responses under different experimental treatments. The first challenging aspect is the collection process, which implies the use of oceanographic research vessels in most occasions since these organisms inhabit areas between ca. 150 m to more than 1000 m depth, and specific sampling gears. The next challenge is the maintenance of the animals on board (in situations where cruises may take weeks) and their transport to home laboratories. Maintenance in the home laboratories is also extremely challenging since special conditions and set-ups are needed to conduct experimental studies to obtain information on the biological processes of these animals. The complexity of the natural environment from which the corals were collected cannot be exactly replicated within the laboratory setting; a fact which has led some researchers to question the validity of work and conclusions drawn from such undertakings. It is evident that aquaria experiments cannot perfectly reflect the real environmental and trophic conditions where these organisms occur, but: (1) in most cases we do not have the possibility to obtain equivalent in situ information and (2) even with limitations, they produce relevant information about the biological limits of the species, which is especially valuable when considering potential future climate change scenarios. This chapter includes many contributions from different authors and is envisioned as both to be a practical “handbook” for conducting cold-water coral aquaria work, whilst at the same time offering an overview on the cold-water coral research conducted in Mediterranean laboratories equipped with aquaria infrastructure. Experiences from Atlantic and Pacific laboratories with extensive experience with cold-water coral work have also contributed to this chapter, as their procedures are valuable to any researcher interested in conducting experimental work with cold-water corals in aquaria. It was impossible to include contributions from all laboratories in the world currently working experimentally with cold-water corals in the laboratory, but at the conclusion of the chapter we attempt, to our best of our knowledge, to supply a list of several laboratories with operational cold-water coral aquaria facilities.
    Repository Name: EPIC Alfred Wegener Institut
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  • 22
    Publication Date: 2020-02-27
    Description: The concept of multi-use of the sea has gained popularity in recent years as a result of ocean space (coastal areas and regions with relatively small sea space in particular) becoming increasingly crowded due to the development of the maritime economy. Competing claims for space can be a source of conflict, however this may also lead to mutual benefits for different users when sustainable combinations are sought. Despite increasing European-wide efforts, on-the-ground knowledge and practice of multi-use are still limited. Therefore, with the aim of investigating opportunities for multi-use development in the European seas, 10 case studies were selected, involving different site-specific contexts. This study analyses the characteristics and development potential for ocean multi-use, integrating results from desk analysis and stakeholder perceptions from different sectors in each of the case study locations. Similarities and differences between various combinations of sea uses are also identified. The results show a high heterogeneity of multi-use opportunities between case studies, with a range of combinations identified. The investigated combinations of maritime uses share an overall balance between factors promoting (drivers) and hindering (barriers) multi-use development. Based on stakeholder opinions, expected benefits (added values) of multi-use implementation outweigh potential negative impacts. Management actions are also proposed to further exploit multi-use potential at a local, regional (sub-national) and national levels.
    Repository Name: EPIC Alfred Wegener Institut
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  • 23
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    In:  EPIC3Energy Transfers in Atmosphere and Ocean, Energy Transfers in Atmosphere and Ocean, Springer, 1, pp. 87-125, ISBN: 978-3-030-05704-6, ISSN: 2524-4264
    Publication Date: 2020-04-20
    Repository Name: EPIC Alfred Wegener Institut
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  • 24
    Publication Date: 2023-11-16
    Description: The paper presents the results of 5 case studies on complex site e ects selected within the project for the level 3 seismic microzonation of several municipalities of Central Italy dam- aged by the 2016 seismic sequence. The case studies are characterized by di erent geo- logical and morphological con gurations: Monte San Martino is located along a hill slope, Montedinove and Arquata del Tronto villages are located at ridge top whereas Capitignano and Norcia lie in correspondence of sediment- lled valleys. Peculiarities of the sites are constituted by the presence of weathered/jointed rock mass, fault zone, shear wave veloc- ity inversion, complex surface and buried morphologies. These factors make the de ni- tion of the subsoil model and the evaluation of the local response particularly complex and di cult to ascertain. For each site, after the discussion of the subsoil model, the results of site response numerical analyses are presented in terms of ampli cation factors and acceleration response spectra in selected points. The physical phenomena governing the site response have also been investigated at each site by comparing 1D and 2D numerical analyses. Implications are deduced for seismic microzonation studies in similar geological and morphological conditions.
    Description: Published
    Description: 5741–5777
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Keywords: Seismic microzonation ; Ampli cation factors ; Response spectra ; Numerical analyses ; site response
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 25
    Publication Date: 2023-11-21
    Description: This paper describes the seismological analyses performed within the framework of the seismic microzonation study for the reconstruction of 138 municipalities damaged by the 2016–2017 sequence in Central Italy. Many waveforms were recorded over approximately 15 years at approximately 180 instrumented sites equipped with permanent or temporary stations in an area that includes all the damaged localities. Site response was assessed using earthquake and noise recordings at the selected stations through different parameters, such as spectral amplification curves, fundamental resonance frequencies, site-specific response spectra, and average amplification factors. The present study was a collaboration of many different institutions under the coordination of the Italian Center for Seismic Microzonation and its applications. The results were homogenized and gathered into site-specific forms, which represent the main deliverable for the benefit of Italian Civil Protection. It is remarkable that the bulk of this study was performed in a very short period (approximately 2 months) to provide quantitative information for detailed microzonation and future reconstruction of the damaged municipalities.
    Description: Published
    Description: 5553–5593
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 26
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Cochran, J. E. M., Braun, C. D., Cagua, E. F., Campbell, M. F., Hardenstine, R. S., Kattan, A., Priest, M. A., Sinclair-Taylor, T. H., Skomal, G. B., Sultan, S., Sun, L., Thorrold, S. R., & Berumen, M. L. Multi-method assessment of whale shark (Rhincodon typus) residency, distribution, and dispersal behavior at an aggregation site in the Red Sea. Plos One, 14(9), (2019): e0222285, doi:10.1371/journal.pone.0222285.
    Description: Whale sharks (Rhincodon typus) are typically dispersed throughout their circumtropical range, but the species is also known to aggregate in specific coastal areas. Accurate site descriptions associated with these aggregations are essential for the conservation of R. typus, an Endangered species. Although aggregations have become valuable hubs for research, most site descriptions rely heavily on sightings data. In the present study, visual census, passive acoustic monitoring, and long range satellite telemetry were combined to track the movements of R. typus from Shib Habil, a reef-associated aggregation site in the Red Sea. An array of 63 receiver stations was used to record the presence of 84 acoustically tagged sharks (35 females, 37 males, 12 undetermined) from April 2010 to May 2016. Over the same period, identification photos were taken for 76 of these tagged individuals and 38 were fitted with satellite transmitters. In total of 37,461 acoustic detections, 210 visual encounters, and 33 satellite tracks were analyzed to describe the sharks’ movement ecology. The results demonstrate that the aggregation is seasonal, mostly concentrated on the exposed side of Shib Habil, and seems to attract sharks of both sexes in roughly equal numbers. The combined methodologies also tracked 15 interannual homing-migrations, demonstrating that many sharks leave the area before returning in later years. When compared to acoustic studies from other aggregations, these results demonstrate that R. typus exhibits diverse, site-specific ecologies across its range. Sightings-independent data from acoustic telemetry and other sources are an effective means of validating more common visual surveys.
    Description: Financial support was provided in part by KAUST baseline research funds (to MLB), KAUST award nos. USA00002 and KSA 00011 (to SRT), and the U.S. National Science Foundation (OCE 0825148 to SRT and GBS).
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  • 27
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in ISME Journal (2019), doi:10.1038/s41396-019-0373-4.
    Description: The benthos in estuarine environments often experiences periods of regularly occurring hypoxic and anoxic conditions, dramatically impacting biogeochemical cycles. How oxygen depletion affects the growth of specific uncultivated microbial populations within these diverse benthic communities, however, remains poorly understood. Here, we applied H218O quantitative stable isotope probing (qSIP) in order to quantify the growth of diverse, uncultured bacterial populations in response to low oxygen concentrations in estuarine sediments. Over the course of 7- and 28-day incubations with redox conditions spanning from hypoxia to euxinia (sulfidic), 18O labeling of bacterial populations exhibited different patterns consistent with micro-aerophilic, anaerobic, facultative anaerobic, and aerotolerant anaerobic growth. 18O-labeled populations displaying anaerobic growth had a significantly non-random phylogenetic distribution, exhibited by numerous clades currently lacking cultured representatives within the Planctomycetes, Actinobacteria, Latescibacteria, Verrucomicrobia, and Acidobacteria. Genes encoding the beta-subunit of the dissimilatory sulfate reductase (dsrB) became 18O labeled only during euxinic conditions. Sequencing of these 18O-labeled dsrB genes showed that Acidobacteria were the dominant group of growing sulfate-reducing bacteria, highlighting their importance for sulfur cycling in estuarine sediments. Our findings provide the first experimental constraints on the redox conditions underlying increased growth in several groups of “microbial dark matter”, validating hypotheses put forth by earlier metagenomic studies.
    Description: This work was supported by a grant OR 417/1-1 from the Deutsche Forschungsgemeinschaft, and a Junior Researcher Fund grant from LMU Munich to WDO. This work was performed in part, through the Master’s Program in Geobiology and Paleontology (MGAP) at LMU Munich.
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  • 28
    Publication Date: 2022-06-09
    Description: In this paper we describe the macroseismic effects produced by the long and destructive seismic sequence that hit Central Italy from 24 August 2016 to January 2017. Starting from the procedure adopted in the complex field survey, we discuss the characteristics of the building stock and its classification in terms of EMS-98 as well as the issues associated with the intensity assessment due to the evolution of damage caused by multiple shocks. As a result, macroseismic intensity for about 300 localities has been determined; however, most of the intensities assessed for the earthquakes following the first strong shock on 24 August 2016, represent the cumulative effect of damage during the sequence. The earthquake parameters computed from the macroseismic datasets are compared with the instrumental determinations in order to highlight critical issues related to the assessment of macroseismic parameters of strong earthquakes during a seismic sequence. The results also provide indications on how location and magnitude computation can be strongly biased when dealing with historical seismic sequences.
    Description: Presidenza del Consiglio dei Ministri - Dipartimento della Protezione Civile (DPC)
    Description: Published
    Description: 2407–2431
    Description: 4T. Sismicità dell'Italia
    Description: 1SR TERREMOTI - Sorveglianza Sismica e Allerta Tsunami
    Description: 2SR TERREMOTI - Gestione delle emergenze sismiche e da maremoto
    Description: 5SR TERREMOTI - Convenzioni derivanti dall'Accordo Quadro decennale INGV-DPC
    Description: JCR Journal
    Keywords: Central Italy ; 2016–2017 Earthquake sequence ; Cumulative damage ; EMS-98 ; 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 29
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zeigler, S. L., Gutierrez, B. T., Sturdivant, E. J., Catlin, D. H., Fraser, J. D., Hecht, A., Karpanty, S. M., Plant, N. G., & Thieler, E. R. Using a Bayesian network to understand the importance of coastal storms and undeveloped landscapes for the creation and maintenance of early successional habitat. Plos One, 14(7), (2019): e0209986, doi:10.1371/journal.pone.0209986.
    Description: Coastal storms have consequences for human lives and infrastructure but also create important early successional habitats for myriad species. For example, storm-induced overwash creates nesting habitat for shorebirds like piping plovers (Charadrius melodus). We examined how piping plover habitat extent and location changed on barrier islands in New York, New Jersey, and Virginia after Hurricane Sandy made landfall following the 2012 breeding season. We modeled nesting habitat using a nest presence/absence dataset that included characterizations of coastal morphology and vegetation. Using a Bayesian network, we predicted nesting habitat for each study site for the years 2010/2011, 2012, and 2014/2015 based on remotely sensed spatial datasets (e.g., lidar, orthophotos). We found that Hurricane Sandy increased piping plover habitat by 9 to 300% at 4 of 5 study sites but that one site saw a decrease in habitat by 27%. The amount, location, and longevity of new habitat appeared to be influenced by the level of human development at each site. At three of the five sites, the amount of habitat created and the time new habitat persisted were inversely related to the amount of development. Furthermore, the proportion of new habitat created in high-quality overwash was inversely related to the level of development on study areas, from 17% of all new habitat in overwash at one of the most densely developed sites to 80% of all new habitat at an undeveloped site. We also show that piping plovers exploited new habitat after the storm, with 14–57% of all nests located in newly created habitat in the 2013 breeding season. Our results quantify the importance of storms in creating and maintaining coastal habitats for beach-nesting species like piping plovers, and these results suggest a negative correlation between human development and beneficial ecological impacts of these natural disturbances.
    Description: Funding for this work was provided through a U.S. Geological Survey Mendenhall Post-Doctoral Fellowship awarded to S. Zeigler, with funding for this fellowship made through a grant to E.R. Thieler from the North Atlantic Landscape Conservation Cooperative. Funders did not play a role in study design, data collection or analysis, decision to publish, or preparation of the manuscript.
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  • 30
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Schwaha, T., Bernhard, J. M., Edgcomb, V. P., & Todaro, M. A. Aethozooides uraniae, a new deep-sea genus and species of solitary bryozoan from the Mediterranean Sea, with a revision of the Aethozoidae. Marine Biodiversity, 49(4), (2019): 1843-1856, doi: 10.1007/s12526-019-00948-w.
    Description: Bryozoa is a phylum of about 6000 extant species that are almost exclusively colonial. Few species of the uncalcified Gymnolaemata, the ctenostomes, however, show solitary forms that essentially consist of single zooids. Recently, several specimens of a solitary ctenostome bryozoan were encountered for the first time in the deep Mediterranean Sea, at the edge of an anoxic brine lake. Differences in size, tentacle number, and in the variability of cystid appendages set these specimens apart from all other known solitary species. Moreover, additional morphological autapomorphic traits suggest the erection of a novel genus to allocate the new species. Consequently, the new taxon Aethozooides gen. nov. is proposed in virtue of the general resemblance of the Mediterranean specimens with those of the genus Aethozoon Hayward, 1978. Aethozooides uraniae gen. et sp. nov. shows significant variability in the number and location of cystid appendages that range from two on the basal side to one or two on the zooid mid-peristomial position and/or, rarely, on the terminal frontal side. The polypide possesses a distinct, long tentacle crown always carrying 10 tentacles. The prominent retractor muscle consists of numerous bundles that, in contrast to other known gymnolaemates, attach not only to the lophophoral base but also to various parts of the gut. Distally, the aperture shows a set of four apertural muscles including four parieto-vaginal bands. Reviewing the state and diversity of solitary ctenostomes, we propose a revision of the family Aethozoidae to include the genera Franzenella d’Hondt, 1983, Aethozoon, Aethozooides, and two species currently affiliated to the genus Franzenella (F. monniotae and F. radicans) for which we erected the new taxon Solella gen. nov. Keywords
    Description: Open access funding provided by University of Vienna. This study was supported by NSF grants OCE-0849578 to VPE and JMB, OCE-1061391 to JMB and VPE, and The Investment in Science Fund at WHOI.
    Keywords: Ctenostomata ; Lophophore ; Cystid appendages ; Arachnidioidea ; Solella
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  • 31
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Mitchell, S. J., Houghton, B. F., Carey, R. J., Manga, M., Fauria, K. E., Jones, M. R., Soule, S. A., Conway, C. E., Wei, Z., & Giachetti, T. Submarine giant pumice: A window into the shallow conduit dynamics of a recent silicic eruption. Bulletin of Volcanology, 81(7), (2019): 42, doi:10.1007/s00445-019-1298-5.
    Description: Meter-scale vesicular blocks, termed “giant pumice,” are characteristic primary products of many subaqueous silicic eruptions. The size of giant pumices allows us to describe meter-scale variations in textures and geochemistry with implications for shearing processes, ascent dynamics, and thermal histories within submarine conduits prior to eruption. The submarine eruption of Havre volcano, Kermadec Arc, in 2012, produced at least 0.1 km3 of rhyolitic giant pumice from a single 900-m-deep vent, with blocks up to 10 m in size transported to at least 6 km from source. We sampled and analyzed 29 giant pumices from the 2012 Havre eruption. Geochemical analyses of whole rock and matrix glass show no evidence for geochemical heterogeneities in parental magma; any textural variations can be attributed to crystallization of phenocrysts and microlites, and degassing. Extensive growth of microlites occurred near conduit walls where magma was then mingled with ascending microlite-poor, low viscosity rhyolite. Meter- to micron-scale textural analyses of giant pumices identify diversity throughout an individual block and between the exteriors of individual blocks. We identify evidence for post-disruption vesicle growth during pumice ascent in the water column above the submarine vent. A 2D cumulative strain model with a flared, shallow conduit may explain observed vesicularity contrasts (elongate tube vesicles vs spherical vesicles). Low vesicle number densities in these pumices from this high-intensity silicic eruption demonstrate the effect of hydrostatic pressure above a deep submarine vent in suppressing rapid late-stage bubble nucleation and inhibiting explosive fragmentation in the shallow conduit.
    Description: This study was funded primarily through an NSF Ocean grant: OCE-1357443 (SJM, BFH and RJC). MM is supported by NSF EAR 1447559. The μXRT analysis was performed at the Lawrence Berkeley National Lab Advanced Light Source beamline 8.3.2 and the large CT scan by SAS at the University of Texas Austin micro-CT facility. Capillary flow porometry and He-pycnometry were assisted by TG and MRJ at the University of Oregon. Microprobe analysis was conducted at the University of Hawai’i at Mānoa. CEC was supported by post-doctoral research fellowship from the Japan Society for the Promotion of Science (JSPS16788). We would like to thank Kenichiro Tani, Takashi Sano, and Eric Hellebrand for their assistance with geochemical data acquisition, JoAnn Sinton and Wagner Petrographic for thin section preparation, Zachary Langdalen for binary processing of BSE images, Warren M. McKenzie for measuring clast densities, and Dula Parkinson for guidance with the μXRT imaging. We further acknowledge the full scientific team, crew and Jason ROV team (Woods Hole Oceanographic Institute) aboard the R/V Roger Revelle (Scripps Institute of Oceanography) during the MESH expedition in 2015, without whom, this study would not have been possible. Finally, we thank Andrew Harris, Katharine Cashman, Lucia Gurioli and an anonymous reviewer for their insightful and helpful reviews of the manuscript.
    Keywords: Giant pumice ; Submarine volcanism ; Banding ; Tube pumice ; Bubble deformation ; Conduit dynamics
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  • 32
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Trembath-Reichert, E., Butterfield, D. A., & Huber, J. A. Active subseafloor microbial communities from Mariana back-arc venting fluids share metabolic strategies across different thermal niches and taxa. Isme Journal, 13(9), (2019): 2264-2279, doi: 10.1038/s41396-019-0431-y.
    Description: There are many unknowns regarding the distribution, activity, community composition, and metabolic repertoire of microbial communities in the subseafloor of deep-sea hydrothermal vents. Here we provide the first characterization of subseafloor microbial communities from venting fluids along the central Mariana back-arc basin (15.5–18°N), where the slow-spreading rate, depth, and variable geochemistry along the back-arc distinguish it from other spreading centers. Results indicated that diverse Epsilonbacteraeota were abundant across all sites, with a population of high temperature Aquificae restricted to the northern segment. This suggests that differences in subseafloor populations along the back-arc are associated with local geologic setting and resultant geochemistry. Metatranscriptomics coupled to stable isotope probing revealed bacterial carbon fixation linked to hydrogen oxidation, denitrification, and sulfide or thiosulfate oxidation at all sites, regardless of community composition. NanoSIMS (nanoscale secondary ion mass spectrometry) incubations at 80 °C show only a small portion of the microbial community took up bicarbonate, but those autotrophs had the highest overall rates of activity detected across all experiments. By comparison, acetate was more universally utilized to sustain growth, but within a smaller range of activity. Together, results indicate that microbial communities in venting fluids from the Mariana back-arc contain active subseafloor communities reflective of their local conditions with metabolisms commonly shared across geologically disparate spreading centers throughout the ocean.
    Description: This work was funded by the NOAA Ocean Exploration and Research (OER) Program, the NSF Center for Dark Energy Biosphere Investigations (C-DEBI) (OCE-0939564), and NOAA/PMEL and JISAO under NOAA Cooperative Agreement NA15OAR4320063. ETR was supported by a NASA Postdoctoral Fellowship with the NASA Astrobiology Institute and a L’Oréal USA For Women in Science Fellowship. The data collected in this study includes work supported by the Schmidt Ocean Institute during cruise FK161129 aboard R/V Falkor. We thank the captains and crews of the R/V Falkor and ROV SuBastian. Critical support in cruise planning and sampling at sea was carried out by Andra Bobbitt, Bill Chadwick, Bob Embley, Ben Larson, and Kevin Roe. Caroline Fortunato, Connor Skennerton, Rika Anderson, Karthik Anantharaman, Jaclyn Saunders, Hank Yu, Lewis Ward, Elaina Graham, and Ben Tully aided bioinformatics pipeline development and Victoria Orphan and Yunbin Guan aided with NanoSIMS analysis. This is C-DEBI Contribution 470, JISAO Contribution 2018-0173, and PMEL Contribution 4867.
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  • 33
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kelly, M. R., Jr., Neubert, M. G., & Lenhart, S. Marine reserves and optimal dynamic harvesting when fishing damages habitat. Theoretical Ecology, 12(2), (2019): 131-144, doi:10.1007/s12080-018-0399-7.
    Description: Marine fisheries are a significant source of protein for many human populations. In some locations, however, destructive fishing practices have negatively impacted the quality of fish habitat and reduced the habitat’s ability to sustain fish stocks. Improving the management of stocks that can be potentially damaged by harvesting requires improved understanding of the spatiotemporal dynamics of the stocks, their habitats, and the behavior of the harvesters. We develop a mathematical model for both a fish stock as well as its habitat quality. Both are modeled using nonlinear, parabolic partial differential equations, and density dependence in the growth rate of the fish stock depends upon habitat quality. The objective is to find the dynamic distribution of harvest effort that maximizes the discounted net present value of the coupled fishery-habitat system. The value derives both from extraction (and sale) of the stock and the provisioning of ecosystem services by the habitat. Optimal harvesting strategies are found numerically. The results suggest that no-take marine reserves can be an important part of the optimal strategy and that their spatiotemporal configuration depends both on the vulnerability of habitat to fishing damage and on the timescale of habitat recovery when fishing ceases.
    Description: This manuscript is based upon the work supported by the National Science Foundation under Grant No. DEB-1558904 (to MGN) and also supported by the National Institute for Mathematical and Biological Synthesis, an Institute supported by the National Science Foundation through NSF Award #DBI-1300426, with additional support from The University of Tennessee, Knoxville.
    Keywords: Fisheries bioeconomics ; Marine protected areas ; Optimal control ; Destructive fishing ; Ecosystem-based management
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  • 34
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lemkau, K. L., Reddy, C. M., Carmichael, C. A., Aeppli, C., Swarthout, R. F., & White, H. K. Hurricane Isaac brings more than oil ashore: Characteristics of beach deposits following the Deepwater Horizon spill. Plos One, 14(3), (2019):e0213464, doi:10.1371/journal.pone.0213464.
    Description: Prior to Hurricane Isaac making landfall along the Gulf of Mexico coast in August 2012, local and state officials were concerned that the hurricane would mobilize submerged oiled-materials from the Deepwater Horizon (DWH) spill. In this study, we investigated materials washed ashore following the hurricane to determine if it affected the chemical composition or density of oil-containing sand patties regularly found on Gulf Coast beaches. While small changes in sand patty density were observed in samples collected before and after the hurricane, these variations appear to have been driven by differences in sampling location and not linked to the passing of Hurricane Isaac. Visual and chemical analysis of sand patties confirmed that the contents was consistent with oil from the Macondo well. Petroleum hydrocarbon signatures of samples collected before and after the hurricane showed no notable changes. In the days following Hurricane Isaac, dark-colored mats were also found on the beach in Fort Morgan, AL, and community reports speculated that these mats contained oil from the DWH spill. Chemical analysis of these mat samples identified n-alkanes but no other petroleum hydrocarbons. Bulk and δ13C organic carbon analyses indicated mat samples were comprised of marshland peat and not related to the DWH spill. This research indicates that Hurricane Isaac did not result in a notable change the composition of oil delivered to beaches at the investigated field sites. This study underscores the need for improved communications with interested stakeholders regarding how to differentiate oiled from non-oiled materials. This is especially important given the high cost of removing oiled debris and the increasing likelihood of false positives as oiled-materials washing ashore from a spill become less abundant over time.
    Description: The authors wish to acknowledge support for this project from the Gulf of Mexico Research Initiative (RFP-V), the Deep-C Consortium (SA 16-30), NSF (OCE-1333148) awarded to CMR, and a Gulf Research Program Early-Career Research Fellowship to HKW. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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    Publication Date: 2022-05-26
    Description: Author Posting. © The Author(s), 2019. This is the author's version of the work. It is posted here by permission of Springer Nature for personal use, not for redistribution. The definitive version was published in Zakroff, C., Mooney, T.A. & Wirth, C. Ocean acidification responses in paralarval squid swimming behavior using a novel 3D tracking system. Hydrobiologia, 808(1),(2018):83-106, doi:10.1007/s10750-017-3342-9.
    Description: Chronic embryonic exposure to ocean acidification (OA) has been shown to degrade the aragonitic statolith of paralarval squid, Doryteuthis pealeii, a key structure for their swimming behavior. This study examined if day-of-hatching paralarval D. pealeii from eggs reared under chronic OA demonstrated measurable impairments to swimming activity and control. This required the development of a novel, cost-effective, and robust method for 3D motion tracking and analysis. Squid eggs were reared in pCO2 levels in a dose-dependent manner ranging from 400 - 2200 ppm. Initial 2D experiments showed paralarvae in higher acidification environments spent more time at depth. In 3D experiments, velocity, particularly positive and negative vertical velocities, significantly decreased from 400 to 1000 ppm pCO2, but showed non-significant decreases at higher concentrations. Activity and horizontal velocity decreased linearly with increasing pCO2, indicating a subtle impact to paralarval energetics. Patterns may have been obscured by notable individual variability in the paralarvae. Responses were also seen to vary between trials on cohort or potentially annual scales. Overall, paralarval swimming appeared resilient to OA, with effects being slight. The newly developed 3D tracking system provides a powerful and accessible method for future studies to explore similar questions in the larvae of aquatic taxa.
    Description: We thank D. Remsen, the MBL Marine Resources Center staff, and MBL Gemma crew for their support in acquiring squid. R. Galat and the facilities staff of the WHOI ESL provided system support. D. McCorkle, KYK Chan, and M. White provided valuable insight on the OA system. E. Moberg, A. Beet, and A. Solow assisted in the development and coding of the 3D model system. We also thank E. Bonk, K. Hoering, M. Lee, D. Weiler, and A. Schlunk for their assistance and input with the experiments. This material is based upon work supported by the National Science Foundation Graduate Research Fellowship under Grant No. 1122374. This project is funded by NSF Grant No. 1220034.
    Keywords: Hypercapnia ; Cephalopod ; Larvae ; Movement analysis ; Stress physiology
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  • 36
    Publication Date: 2022-05-26
    Description: Author Posting. © The Author(s), 2019. This is the author's version of the work. It is posted here by permission of Springer for personal use, not for redistribution. The definitive version was published in , Zakroff, C., Mooney, T.A. & Berumen, M.L. Dose-dependence and small-scale variability in responses to ocean acidification during squid, Doryteuthis pealeii, development. Marine Biology, (2019), 166: 62. doi:10.1007/s00227-019-3510-8.
    Description: Coastal squids lay their eggs on the benthos, leaving them to develop in a dynamic system that is undergoing rapid acidification due to human influence. Prior studies have broadly investigated the impacts of ocean acidification on embryonic squid, but have not addressed the thresholds at which these responses occur or their potential variability. We raised squid, Doryteuthis pealeii (captured in Vineyard Sound, Massachusetts, USA: 41° 23.370N 70° 46.418´W), eggs in three trials across the breeding season (May - September, 2013) in a total of six chronic pCO2 exposures (400, 550, 850, 1300, 1900, and 2200 ppm). Hatchlings were counted and subsampled for mantle length, yolk volume, hatching time, hatching success, and statolith morphology. New methods for analysis of statolith shape, rugosity, and surface degradation were developed and are presented (with code). Responses to acidification (e.g., reduced mantle lengths, delayed hatching, and smaller, more degraded statoliths) were evident at ~ 1300 ppm CO2. However, patterns of physiological response and energy management, based on comparisons of yolk consumption and growth, varied among trials. Interactions between pCO2 and hatching day indicated a potential influence of exposure time on responses, while interactions with culture vessel highlighted the substantive natural variability within a clutch of eggs. While this study is consistent with, and expands upon, previous findings of sensitivity of the early life stages to acidification, it also highlights the plasticity and potential for resilience in this population of squid.
    Description: This material was based upon work supported by the National Science Foundation Graduate Research Fellowship under Grant No. 1122374 to CZ. This project was funded by National Science Foundation Grant No. 1220034 to TAM.
    Description: 2020-04-19
    Keywords: cephalopod ; embryo ; hypercapnia ; paralarvae ; statolith ; stress
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  • 37
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Chen, R.; Park, H. A.; Mnatsakanyan, N.; Niu, Y.; Licznerski, P.; Wu, J.; Miranda, P.; Graham, M.; Tang, J.; Boon, A. J. W.; Cossu, G.; Mandemakers, W.; Bonifati, V.; Smith, P. J. S.; Alavian, K. N.; Jonas, E. A. Parkinson's disease protein DJ-1 regulates ATP synthase protein components to increase neuronal process outgrowth. Cell Death & Disease, 10(6), (2019):469, doi:10.1038/s41419-019-1679-x.
    Description: Familial Parkinson’s disease (PD) protein DJ-1 mutations are linked to early onset PD. We have found that DJ-1 binds directly to the F1FO ATP synthase β subunit. DJ-1’s interaction with the β subunit decreased mitochondrial uncoupling and enhanced ATP production efficiency while in contrast mutations in DJ-1 or DJ-1 knockout increased mitochondrial uncoupling, and depolarized neuronal mitochondria. In mesencephalic DJ-1 KO cultures, there was a progressive loss of neuronal process extension. This was ameliorated by a pharmacological reagent, dexpramipexole, that binds to ATP synthase, closing a mitochondrial inner membrane leak and enhancing ATP synthase efficiency. ATP synthase c-subunit can form an uncoupling channel; we measured, therefore, ATP synthase F1 (β subunit) and c-subunit protein levels. We found that ATP synthase β subunit protein level in the DJ-1 KO neurons was approximately half that found in their wild-type counterparts, comprising a severe defect in ATP synthase stoichiometry and unmasking c-subunit. We suggest that DJ-1 enhances dopaminergic cell metabolism and growth by its regulation of ATP synthase protein components.
    Description: The research was supported by NIH (NS081746) to E.A.J., W.M. and V.B. are supported by the Stichting Parkinson Fonds (The Netherlands).
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Thomas, F., Morris, J. T., Wigand, C., & Sievert, S. M. Short-term effect of simulated salt marsh restoration by sand-amendment on sediment bacterial communities. Plos One, 14(4), (2019):e0215767, doi:10.1371/journal.pone.0215767.
    Description: Coastal climate adaptation strategies are needed to build salt marsh resiliency and maintain critical ecosystem services in response to impacts caused by climate change. Although resident microbial communities perform crucial biogeochemical cycles for salt marsh functioning, their response to restoration practices is still understudied. One promising restoration strategy is the placement of sand or sediment onto the marsh platform to increase marsh resiliency. A previous study examined the above- and below-ground structure, soil carbon dioxide emissions, and pore water constituents in Spartina alterniflora-vegetated natural marsh sediments and sand-amended sediments at varying inundation regimes. Here, we analyzed samples from the same experiment to test the effect of sand-amendments on the microbial communities after 5 months. Along with the previously observed changes in biogeochemistry, sand amendments drastically modified the bacterial communities, decreasing richness and diversity. The dominant sulfur-cycling bacterial community found in natural sediments was replaced by one dominated by iron oxidizers and aerobic heterotrophs, the abundance of which correlated with higher CO2-flux. In particular, the relative abundance of iron-oxidizing Zetaproteobacteria increased in the sand-amended sediments, possibly contributing to acidification by the formation of iron oxyhydroxides. Our data suggest that the bacterial community structure can equilibrate if the inundation regime is maintained within the optimal range for S. alterniflora. While long-term effects of changes in bacterial community on the growth of S. alterniflora are not clear, our results suggest that analyzing the microbial community composition could be a useful tool to monitor climate adaptation and restoration efforts.
    Description: This work was supported by NSF grants DEB-1050557 (SMS) and OCE-1637630 (JM), and WHOI Investment in Science Funds (SMS). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Radice, V. Z., Brett, M. T., Fry, B., Fox, M. D., Hoegh-Guldberg, O., & Dove, S. G. Evaluating coral trophic strategies using fatty acid composition and indices. Plos One, 14(9), (2019): e0222327, doi:10.1371/journal.pone.0222327.
    Description: The ecological success of shallow water reef-building corals has been linked to the symbiosis between the coral host and its dinoflagellate symbionts (herein ‘symbionts’). As mixotrophs, symbiotic corals depend on nutrients 1) transferred from their photosynthetic symbionts (autotrophy) and 2) acquired by host feeding on particulate organic resources (heterotrophy). However, coral species differ in the extent to which they depend on heterotrophy for nutrition and these differences are typically poorly defined. Here, a multi-tracer fatty acid approach was used to evaluate the trophic strategies of three species of common reef-building coral (Galaxea fascicularis, Pachyseris speciosa, and Pocillopora verrucosa) whose trophic strategies had previously been identified using carbon stable isotopes. The composition and various indices of fatty acids were compared to examine the relative contribution of symbiont autotrophy and host heterotrophy in coral energy acquisition. A linear discriminant analysis (LDA) was used to estimate the contribution of polyunsaturated fatty acids (PUFA) derived from various potential sources to the coral hosts. The total fatty acid composition and fatty acid indices revealed differences between the more heterotrophic (P. verrucosa) and more autotrophic (P. speciosa) coral hosts, with the coral host G. fascicularis showing overlap with the other two species and greater variability overall. For the more heterotrophic P. verrucosa, the fatty acid indices and LDA results both indicated a greater proportion of copepod-derived fatty acids compared to the other coral species. Overall, the LDA estimated that PUFA derived from particulate resources (e.g., copepods and diatoms) comprised a greater proportion of coral host PUFA in contrast to the lower proportion of symbiont-derived PUFA. These estimates provide insight into the importance of heterotrophy in coral nutrition, especially in productive reef systems. The study supports carbon stable isotope results and demonstrates the utility of fatty acid analyses for exploring the trophic strategies of reef-building corals.
    Description: This study was made possible by funding from the XL Catlin Seaview Survey (OHG and VZR; http://catlinseaviewsurvey.com/), Australian Research Council (ARC) Centre of Excellence for Coral Reef Studies (CE140100020; SD and OHG; https://www.coralcoe.org.au/), an ARC Laureate Fellowship (FL120100066; OHG; https://www.arc.gov.au), the University of Queensland Research Training Scholarship (VZR; https://www.uq.edu.au/), and the University of Washington Dale A. Carlson Endowed Faculty Support Fund (MTB and VZR; https://www.washington.edu/). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Millette, N. C., Kelble, C., Linhoss, A., Ashby, S., & Visser, L. Using spatial variability in the rate of change of chlorophyll a to improve water quality management in a subtropical oligotrophic estuary. Estuaries and Coasts, 42(7), (2019): 1792-1803, doi:10.1007/s12237-019-00610-5.
    Description: Anthropogenic eutrophication threatens numerous aquatic ecosystems across the globe. Proactive management that prevents a system from becoming eutrophied is more effective and cheaper than restoring a eutrophic system, but detecting early warning signs and problematic nutrient sources in a relatively healthy system can be difficult. The goal of this study was to investigate if rates of change in chlorophyll a and nutrient concentrations at individual stations can be used to identify specific areas that need to be targeted for management. Biscayne Bay is a coastal embayment in southeast Florida with primarily adequate water quality that has experienced rapid human population growth over the last century. Water quality data collected at 48 stations throughout Biscayne Bay over a 20-year period (1995–2014) were examined to identify any water quality trends associated with eutrophication. Chlorophyll a and phosphate concentrations have increased throughout Biscayne Bay, which is a primary indicator of eutrophication. Moreover, chlorophyll a concentrations throughout the northern area, where circulation is restricted, and in nearshore areas of central Biscayne Bay are increasing at a higher rate compared to the rest of the Bay. This suggests increases in chlorophyll a are due to local nutrient sources from the watershed. These areas are also where recent seagrass die-offs have occurred, suggesting an urgent need for management intervention. This is in contrast with the state of Florida listing of Biscayne Bay as a medium priority impaired body of water.
    Description: Data provided by the SERC-FIU/SFWMD Water Quality Monitoring Network is supported by SFWMD/SERC Cooperative Agreement #4600000352 as well as EPA Agreement #X7-96410603-3. This research was also funded by a NOAA/Atlantic Oceanographic and Meteorological Laboratory grant to the Northern Gulf Institute (award number NA160AR4320199).
    Keywords: Chlorophyll a ; Eutrophication ; Oligotrophic ; Ecological indicators
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  • 41
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    In:  EPIC3Advances in Polar Ecology 2, The Ecosystem of Kongsfjorden, Svalbard, Switzerland, Springer Nature, 2, pp. 303-330, ISSN: 2468-5712
    Publication Date: 2023-06-21
    Description: Organisms in shallow waters at high latitudes are under pressure due to climate change. These areas are typically inhabited by microphytobenthos (MPB) communities, composed mainly of diatoms. Only sparse information is available on the ecophysiology and acclimation processes within MPBs from Arctic regions. The physico-chemical environment and the ecology and ecophysiology of benthic diatoms in Kongsfjorden (Svalbard, Norway) are addressed in this review. MPB biofilms cover extensive areas of sediment. They show high rates of primary production, stabilise sediment surfaces against erosion under hydrodynamic forces,and affect the exchange of oxygen and nutrients across the sediment-water interface. Additionally, this phototrophic community represents a key component in the functioning of the Kongsfjorden trophic web, particularly as a major food source for benthic suspension- or deposit-feeders. MPB in Kongsfjorden is confronted with pronounced seasonal variations in solar radiation, low temperatures, and hyposaline (meltwater) conditions in summer, as well as long periods of ice and snow cover in winter. From the few data available, it seems that these organisms can easily cope with these environmental extremes. The underlying physiological mechanisms that allow growth and photosynthesis to continue under widely varying abiotic parameters, along with vertical migration and heterotrophy, and biochemical features such as a pronounced fatty-acid metabolism and silicate incorporation are discussed. Existing gaps in our knowledge of benthic diatoms in Kongsfjorden, such as the chemical ecology of biotic interactions, need to be filled. In addition, since many of the underlying molecular acclimation mechanisms are poorly understood, modern approaches based on transcriptomics, proteomics, and/or metabolomics, in conjunction with cell biological and biochemical techniques, are urgently needed. Climate change models for the Arctic predict other multifactorial stressors, such as an increase in precipitation and permafrost thawing, with consequences for the shallow-water regions. Both precipitation and permafrost thawing are likely to increase nutrient-enriched, turbid freshwater runoff and may locally counteract the expected increase in coastal radiation availability. So far, complex interactions among factors, as well as the full genetic diversity and physiological plasticity of Arctic benthic diatoms, have only rarely been considered. The limited existing information is described and discussed in this review.
    Repository Name: EPIC Alfred Wegener Institut
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    In:  EPIC3Advances in Polar Ecology, The Ecosystem of Kongsfjorden, Svalbard, Springer, pp. 23-46, ISBN: 978-3-319-46423-7
    Publication Date: 2023-06-21
    Description: The Arctic region is considered to be most sensitive to climate change, with warming in the Arctic occurring considerably faster than the global average due to several positive feedback mechanisms contributing to the “Arctic amplification”. Also the maritime and mountainous climate of Svalbard has undergone changes during the last decades. Here, the focus is set on the current atmospheric boundary conditions for the marine ecosystem in the Kongsfjorden area, discussed in the frame of long-term climatic observations in the larger regional and hemispheric context. During the last century, a general warming is found with temperature increases and precipitation changes varying in strength. During the last decades, a strong seasonality of the warming is observed in the Kongsfjorden area, with the strongest temperature increase occurring during the winter season. The winter warming is related to observed changes in the net longwave radiation. Moreover, changes in the net shortwave are observed during the summer period, attributed to the decrease in reflected radiation caused by the retreating snow cover. Another related aspect of radiation is the intensity of solar ultra-violet radiation that is closely coupled to the abundance of ozone in the column of air overhead. The long term evolution of ozone losses in the Arctic and their connection to climate change are discussed.
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    In:  EPIC3Scientific Reports, Springer Nature, 9(1), pp. 12268-12268, ISSN: 2045-2322
    Publication Date: 2023-09-25
    Description: Identifying stabilizing factors in foodwebs is a long standing challenge with wide implications for community ecology and conservation. Here, we investigate the stability of spatially resolved meta-foodwebs with far-ranging super-predators for whom the whole meta-foodwebs appears to be a single habitat. By using a combination of generalized modeling with a master stability function approach, we are able to efficiently explore the asymptotic stability of large classes of realistic many-patch meta-foodwebs. We show that meta-foodwebs with far-ranging top predators are more stable than those with localized top predators. Moreover, adding far-ranging generalist top predators to a system can have a net stabilizing effect. These results highlight the importance of top predator conservation.
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    In:  EPIC3BIOspektrum, Springer Nature, 25(1), pp. 50-57, ISSN: 0947-0867
    Publication Date: 2024-05-03
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    Bulletin of mathematical biology 42 (1980), S. 131-135 
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    Notes: Abstract The theory of complementary variational principles is used to obtain maximum and minimum principles for diffusion problems with Michaelis-Menten kinetics. In an illustrative calculation we obtain an extremely accurate variational solution in good agreement with the numerical solution of McElwain (1978).
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    Bulletin of mathematical biology 42 (1980), S. 137-141 
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    Bulletin of mathematical biology 42 (1980), S. 181-189 
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    Notes: Abstract Necessary and sufficient conditions for primitivity of a product of two Leslie matrices are given. Such a product could be used in modeling the growth of a population governed alternately by two different sets of fertility and survival parameters.
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    Bulletin of mathematical biology 42 (1980), S. 173-180 
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    Notes: Abstract Zadeh's transfer function method for linear time-variable systems is used to apply frequency-domain analysis to a periodically time-varying elastance model of the left ventricle. Left ventricular pressure computed from the system function of the time-varying elastance and the phasors of aortic flow shows a typical waveform of the measured ventricular pressure.
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    Bulletin of mathematical biology 42 (1980), S. 901-901 
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    Bulletin of mathematical biology 42 (1980), S. 147-160 
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    Notes: Abstract A theory of noise fluctuations is developed which is applicable to systems of any size in which unimolecular or bimolecular reactions are occurring. The main difference between small and large reacting systems is that in the former the probability of finding a particle in a particular state does not obey a Gaussian distribution, but satisfies a distribution which reflects the mechanism of the chemical reaction. This difference is reflected in the main result of the theory: an autocorrelation function that is expressible as a sum of exponentials, the amplitudes of which are explicit functions of the moments of the distribution. Thus, by using small systems, the autocorrelation function,in principle, allows the elucidation of reaction mechanisms. Numerical simulations indicate that for reacting systems having ten or fewer particles, the deviation of the autocorrelation function from a single exponential should be easily detectable, and that estimates of the first four moments of the distribution should be possible. Accurate inference of the distribution, however, will require further mathematical and experimental advances.
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    Bulletin of mathematical biology 42 (1980), S. 161-172 
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    Notes: Abstract The recent mathematical formalization of the concepts of matter and extrinsical energy, which are used for the relational representation of biological systems, is employed in the analysis of the important experimental discoveries of Comorosanet al. related to low energy electromagnetic irradiations on enzyme substrates. By means of the present analysis one of the properties inherent to the experimental phenomena is more precisely exposed, and theoretical developments corresponding to “energetical evolutions” in a biological system (Leguizamón, 1976) may now have an experimental basis. Important limitations are introduced for the validity of the commutativity and associativity of cartesian product of sets, when they represent matter and its linked extrinsical energy. In connection with this last aspect, new important knowledge is obtained for the relational mathematical representation of biological systems.
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    Bulletin of mathematical biology 42 (1980), S. 397-429 
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    Notes: Abstract The structure of solutions to a simple spatially dependent population model involving growth and death is investigated. Two forms of motility of the population are considered: (1) random motion only modeled by a Fickian law, and (2) a directed component of motion (chemotaxis), included in addition to the random motion. Under certain growth conditions a traveling wave of constant speed is approached. This speed can be increased by the addition of the chemotaxis with a corresponding increase in the asymptotic population. Development of initial conditions into a wave is illustrated numerically.
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    Bulletin of mathematical biology 42 (1980), S. 365-396 
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    Notes: Abstract This paper describes mechanisms of intracellular and intercellular adaptation that are due to spatial or temporal factors. The spatial mechanisms support self-regulating pattern formation that is capable of directing self-organization in a large class of systems, including examples of directed intercellular growth, transmitter production, and intracellular conductance changes. A balance between intracellular flows and counterflows causes adaptation. This balance can be shifted by environmental inputs. The decrease in Ca2+-modulated outward K+ conductance in certain molluscan nerve cells is a likely example. Examples wherein Ca2+ acts as a second messenger that shunts receptor sensitivity can also be discussed from this perspective. The systems differ in basic ways from recent diffusion models. Chemical transducers driven by membrane-bound intracellular signals can establish long-range intercellular interactions that compensate for variable intercellular distances and are invariant under developmental size changes; diffusional signals do not. The intracellular adaptational mechanisms are formally analogous to intercellular mechanisms that include cellular properties which are omitted in recent reaction-diffusion models of pattern formation. The cellular models use these properties to compute size-invariant properties despite wide variations in their intercellular signals. Mechanisms of temporal adaptation can be derived from the simplest laws of chemical transduction by using a correspondence principle. These mechanisms lead to such properties of intercellular signals as transient overshoot, antagonistic rebound, and an inverted U in sensitivity as intracellular signals or adaptation levels shift. Such effects are implicated in studies of behavioral, reinforcement, motor control, and cognitive coding.
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    Bulletin of mathematical biology 42 (1980), S. 447-459 
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    Notes: Abstract Large radiation doses to the lung can cause early death from cardiopulmonary insufficiency resulting from radiation pneumonitis and pulmonary fibrosis. A model for early death following inhalation of insoluble radioactive particles is propose. The model is based on three assumptions: (1) early death results from damage to a cluster of cells from a large number of cell clusters at risk, (2) the dose that causes early death depends on how the radiation is delivered in time and (3) the cell clusters at risk to damage are equally sensitive ro radiation. Results from asymptotic theory of extreme values, along with biophysical considerations, suggest that the cumultive distribution function for the absorbed radiation dose to the production of pulmonary injury sufficient to cause early death is best estimated by the third asymptotic distribution without a threshold. This distribution function is identical to the Weibull cumulative distribution function. Data for Beagle dogs after inhaling relatively insoluble forms of alpha- or beta-gamma-emitting particles are shown to support the Weibull model.
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    Bulletin of mathematical biology 42 (1980), S. 461-480 
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    Notes: Abstract Models of the human respiratory tract were developed based on detailed morphometric measurements of a silicone rubber cast of the human tracheobronchial airways. Emphasis was placed on the “Typical Path Lung Model” which used one typical pathway to represent a portion of the lung, such as a lobe, or to represent the whole lung. The models contain geometrical parameters, including airway segment diameters, lengths, branching angles and angles of inclination to gravity, which are needed for estimating inhaled particle deposition. Aerosol depositions for various breathing patterns and particle sizes were calculated using these lung models and the modified Findeisen-Landahl computational scheme. The results agree reasonably well with recent experimental data. Regional deposition, including lobar deposition fractions, are also calculated and compared with results based on the ICRP lung deposition model.
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    Bulletin of mathematical biology 42 (1980), S. 481-488 
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    Notes: Abstract The completely symmetrical system is defined as having identical transfer coefficients between pairs of compartments and the same loss coefficient for each compartment. The eigenvalues and eigenvector are explicitly found along with the inverses of the system matrix and the matrix of eigenvectors. Many properties, special instances of more general theorems, can be seen at once from the explicit analytic solution of the initial value, washout and washin problems. The system serves as a known case for testing estimation procedures, algorithms for solutions of linear systems, eigenvalue-eigenvector and inversion routines and is of considerable tutorial value.
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    Bulletin of mathematical biology 42 (1980), S. 431-446 
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    Notes: Abstract The mathematical structures underlying the theories of organismic sets, (M, R)-systems and molecular sets are shown to be transformed naturally within the theory of categories and functors. Their natural transformations allow the comparison of distinct entities, as well as the modelling of dynamics in “organismic” structures.
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    Bulletin of mathematical biology 42 (1980), S. 489-505 
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    Notes: Abstract To explain the sodium conductance change using Wei's dipole model (Wei, 1969), we may expect that during depolarization the dipole's population difference, ΔN, is first reduced and then returns more slowly to its resting value. This paper shows that the experimental results of gating currents support this idea. Such time course of ΔN, however, is not a usual relaxation process. To account for the unusual behavior of ΔN, we propose two additional assumptions: (1) there exists a special coupling system (probably the intramolecular vibrations) whose coupling strength with the dipoles is much stronger than with the thermal bath (intermolecular vibrations), and (2) there also exist “traps” for the dipole's excitation energy so that this energy is transformed into other energy forms at a rate increasing with the increase of depolarization. Experiments suggest that the traps are proteins located at the inner membrane surface.
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    Bulletin of mathematical biology 42 (1980), S. 507-528 
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    Notes: Abstract Current research into the dynamics of iterative ecological and biological models has lead to a number of theorems concerning the existence of various types of iterative dynamical behavior. In particular, much study has been done on the dynamical behavior of the “simplest dynamical system”f b(x)=bx(1−x), which is just the canonical discrete form of logistic growth equations found in ecology, sociobiology, and population biology. In this paper, we make use of some of the techniques and concepts of topological dynamics to construct a number of generalized conjugacy theorems. These theorems are then used to demonstrate that the mappingf b has a number of conjugacy classes in which the dynamics of the iterates is equivalent to within a change of variables. The concepts of fitness and survival in logistic equations are then shown to be independent, if we follow certain intuitive definitions for these concepts. This conclusion follows from a comparison of the conjugacy classes of the functionf b and the extinction sets off b.
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    Notes: Abstract For chemical reactions not at equilibrium but proceeding in the forward direction in the steady state, a result found by a method first introduced by H. G. Britton (1963, 1965) is generalized to prove that if $${{\vec J} \mathord{\left/ {\vphantom {{\vec J} {\overset{\lower0.5em\hbox{$\smash{\scriptscriptstyle\leftarrow}$}}{J} }}} \right. \kern-\nulldelimiterspace} {\overset{\lower0.5em\hbox{$\smash{\scriptscriptstyle\leftarrow}$}}{J} }}$$ is the unidirectional flux ratio, $${{\vec J} \mathord{\left/ {\vphantom {{\vec J} {\overset{\lower0.5em\hbox{$\smash{\scriptscriptstyle\leftarrow}$}}{J} }}} \right. \kern-\nulldelimiterspace} {\overset{\lower0.5em\hbox{$\smash{\scriptscriptstyle\leftarrow}$}}{J} }}$$ exp (−ΔG/RT). The conditions under which the equality or inequality applies are discussed. If the unidirectional fluxes are not in the steady state, the unidirectional flux ratio is time invariant in certain specific situations. One such important case is for chemical reaction systems with an ordered sequence of reactions. For systems with more than one pathway, $${{\vec J} \mathord{\left/ {\vphantom {{\vec J} {\overset{\lower0.5em\hbox{$\smash{\scriptscriptstyle\leftarrow}$}}{J} }}} \right. \kern-\nulldelimiterspace} {\overset{\lower0.5em\hbox{$\smash{\scriptscriptstyle\leftarrow}$}}{J} }}$$ is not constant except for special cases. These results also apply to diffusional and active transport systems.
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    Bulletin of mathematical biology 42 (1980), S. 599-600 
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    Bulletin of mathematical biology 42 (1980), S. 539-549 
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    Bulletin of mathematical biology 42 (1980), S. 551-597 
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    Notes: Abstract The nonlinear second-order difference equationx n+1=axn(1-xn−1), where 0≦x nX≦1 anda ≧1, is examined from varying points of view, analytical, numerical and geometrical. An analytic expression is obtained for an invariant attracting curveC ∞ (a) in phase space, which becomes the central object of study. This basic curve, which replaces the simple parabolic shape typical of many analogous first-order models, may have a complicated geometrical structure. As the parametera increases,C ∞(a) undergoes transformations characterized by the dynamical descriptions: stable node→stable focus→stable limit cycle →chaotic attractor. Although the limited characterization ofchaos by the appearance of nonperiodic solutions and solutions of arbitrarily large period is relied upon, this appears to be only a simplified approximation of the real behavior of solutions. Trajectories (x n, xn+1),n=0,1,…, are calculated using the related nonlinear planar mapT a(x,y)=(y,ay(1−x)), and regions of persistence and escape are described for characteristic values ofa. The study of persistence, of even more fundamental interest than the associated problems of periodicity and stability, receives special attention. We introduce a geometrical model, similar in many respects to that for the well-known analoguex n+1=axn(1−x n), but having several new and important features. It appears that as the parametera increases in the chaotic regime there are infinitely many intermittent bursts of increase in the probability that any initial point (x 0, x1) will persist in the unit square under successive iterations of the mappingT a, an unexpected property that should be of interest for applications. A discussion of the applicability of these results to population dynamics theory is given, and it is suggested that such equations might find useful application to problems in developmental biology as well.
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    Bulletin of mathematical biology 42 (1980), S. 627-645 
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    Notes: Abstract Based on the principle of minimum power, a mathematical model of the functional state of the oxygen transport system is presented. The optimization model minimizes the power expenditure of the heart, bone marrow, lung and other tissues. The model is used to determine the functional parameters of the oxygen transport system in man under both normal and varying barometric pressures. Theoretical results are compared with experimental data.
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    Bulletin of mathematical biology 42 (1980), S. 601-625 
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    Notes: Abstract A quantitative model of ion binding and molecular interactions in the lipid bilayer membrane is proposed and found to be useful in examining the factors underlying such membrane characteristics as shape, sidedness, stability and vesicle size at various cation concentrations. The lipid membrane behaves as a bilayer couple whose preferential radius of curvature depends on the expansion or contraction of one monolayer relative to the other. It is proposed that molecular packing may be altered by electrostatic repulsion of adjacent like-charged phospholipid headgroups, or by bringing two headgroups closer together by divalent cation crossbridging. The surface concentrations of each type of cation-phospholipid complex can be described by simple binding equilibria and the Gouy-Chapman-Stern formulation for the surface potential in a diffuse double layer. The asymmetric distribution of acidic phospholipids in most biological membranes can account for the differential effects of identical ionic environments on either side of the bilayer. The fraction of vesicle material which tends to have a right-side-out orientation may be approximated by a normal distribution about the mean curvature. The theory generates vesicle sidedness distributions that, when fitted to experimental results from human erythrocyte membranes, provide an alternative method of estimating intrinsic cationphospholipid dissociation constants and other molecular parameters of the bilayer. The results also corroborate earlier suggestions that the Gouy-Chapman theory tends to overestimate free counter-ion concentrations at the surface under large surface potentials.
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    Bulletin of mathematical biology 42 (1980), S. 681-689 
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    Notes: Abstract The “yellow strips” on the cuticle of the Oriental Hornet (Vespa orientalis, Hymenoptera, Vespinae), present photoelectric properties. A mathematical model for the relative changes in resistance as a photoconductive process conforms to the general model for a semiconductor with traps.
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    Bulletin of mathematical biology 42 (1980), S. 701-718 
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    Notes: Abstract Damped nonlinear oscillations in biological and biochemical systems are investigated by the extended Krylov-Bogoliubov-Mitropolskii (KBM) method. A review on the extension made by Popov to the KBM method is given and also further improvements are presented. Applications are made to models of oscillating chemical reactions (Lefever and Nicolis, 1971), FitzHugh (1961) equations, and population dynamics (Gatto and Rinaldi, 1977). Comparison to damped oscillating physical and engineering systems is made.
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    Bulletin of mathematical biology 42 (1980), S. 719-728 
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    Notes: Abstract The conditions that will allow the lumping together of several age classes in the Leslie model are investigated. We show that if the lumping is to be valid for all population distributions, then the parameters of the model must be periodic. Lumping is valid when the population is in equilibrium, but equilibrium should be tested before the model is lumped.
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    Bulletin of mathematical biology 42 (1980), S. 647-679 
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    Notes: Abstract Catastrophe theory is a mathematical theory which, allied with a new and controversial methodology, has claimed wide application, particularly in the biological and the social sciences. These claims have recently been heatedly opposed. This article describes the debate and assesses the merits of the different arguments advanced.
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    Bulletin of mathematical biology 42 (1980), S. 765-795 
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    Notes: Abstract Estimates of capillary tracer permeability calculated using multiple indicator data depend upon the particular model adopted to describe blood tissue exchange. The model proposed by Crone (1963) is appropriate when some of the injected tracer diffuses into the tissue but does not return appreciably to the bloodstream before data collection is terminated. Under these conditions extraction of tracer by the tissue depends on a single dimensionless parameter, αcap, defined as the ratio of capillary permeability surface area to water flow. The effects of finite red cell tracer permeability on the Crone model estimate of capillary permeability are examined in the present study. The results indicate that even when back diffusion from the extravascular space is negligible, significant errors in the Crone model estimate can be expected when capillary permeability is relatively high and the ratio of red cell to capillary permeability is less than unity. However, when an aliquot of blood is equilibrated with tracer prior to injection and the dimensionless capillary permeability is relatively low (i.e. αcap ≦ 0.25 for a haematocrit≦50%), the whole blood Crone model estimate of αcap will be within 10% of the actual value, irrespective of red cell permeability. Red cell-plasma exchange for commonly used tracer-organ combinations should not significantly affect Crone estimates of capillary permeability under normal physiological conditions, but may be important in low flow situations.
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    Bulletin of mathematical biology 42 (1980), S. 807-828 
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    Notes: Abstract Assuming truncated ellipsoidal geometry for the right and left ventricles, a model is developed for the myocardium enabling biventricular mechanical behavior to be studied. Employing pressure-volume data taken from normal dog hearts and from hearts in which the pulmonary artery has been banded over periods of 2–40 weeks, it is shown that: (a) right ventricular wall stresses are higher than left ventricular stresses; (b) right ventricular wall stress increases initially to a maximum after 3–4 weeks followed by a decline to normal and even subnormal levels, attaining a minimum value at 32–33 weeks; (c) left ventricular stresses behave in a similar manner, attaining their maximum and minimum levels after 7–8 weeks and 32–33 weeks respectively. These results suggest that surgical or medical therapy in patients with hypertrophied ventricles might be more appropriate during the period of wall stress reduction.
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    Bulletin of mathematical biology 42 (1980), S. 837-845 
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    Notes: Abstract In this paper we describe a mathematical model of the oscillations of the diaphragm which limits the vitreous body from the anterior segment of the human eye after the lens has been removed in a cataract operation. We study the motion of this diaphragm driven by movements of the eye. Firstly, a mathematical statement of the problem is given and then we solve the problem exactly for a given class of eye movements. From the analysis we deduce that significant oscillations of the membrane are driven by saccades and that it is the angular acceleration of the eye which causes these types of oscillations. A numerical example is given.
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    Bulletin of mathematical biology 42 (1980), S. 871-887 
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    Notes: Abstract The Lotka-Volterra system of prey-predator equations is considered with a special type of continuous time delay. In the case of equal diffusion coefficients Hopf’s bifurcation technique is used to show the existence of travelling wave train solutions for the prey-predator system.
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    Bulletin of mathematical biology 42 (1980), S. 861-870 
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    Notes: Abstract A mathematical model of prothrombin activation is being proposed which includes the feedback mechanism of thrombin and the alteration of factor V by thrombin. This model is in good agreement with experimental data for the dependence of the rate of thrombin formation on the concentrations of factors V and X a . In particular, it correctly predicts the existence and location of a maximum in both of these cases.
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    Bulletin of mathematical biology 42 (1980), S. 847-859 
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    Notes: Abstract A new model of the upper tracheobronchial tree is proposed to account for the three-dimensional nature of the airway system. In addition to the tube length, the tube diameter, and the branching angle, the model includes information on the orientation angle of each tube relative to its parent tube. The orientation angle, defined as the angle between two successive bifurcations, is useful for calculating the gravitational inclination of each tube. The information on orientation angle is further used to construct a binary coding system for identifying individual tubes in the airway tree. The proposed model is asymmetrical, but the same principles can be readily used to construct a symmetrical one.
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    Bulletin of mathematical biology 42 (1980), S. 889-897 
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    Notes: Abstract In any control system for which the number of independent controls is smaller than the number of degrees of freedom to be controlled, our choice of control in any state is restricted to a submanifold of smaller dimension than the tangent space. This simple fact has a number of important consequences for questions of biological import; we consider its implications for adaptation, for senescent phenomena and for the determination of tertiary structures of polypeptides through control of certain average properties. We also formulate the Pontryagin Maximum Principle of Optimal control theory in such a way as to inquire whether specific biodynamic systems can be regarded as optimal with respect to rate of accumulation of particular quantities of the system. We find that if this is possible, the quantity in question must play the role of a clock.
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    Bulletin of mathematical biology 42 (1980), S. 899-900 
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    Bulletin of mathematical biology 42 (1980), S. 1-15 
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    Notes: Abstract A computational model to predict deposition of a wide variety of particulate pollutants in several species of mammals is presented. The model incorporates breathing pattern and detailed anatomical models of the respiratory tract based on extensive morphometric measurements of individual airways. The predicted deposition from this general model is in close agreement with observed deposition of monodisperse aerosols in rats. Particle size and density and respiratory breathing patterns are the critical parameters affecting regional deposition.
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    Bulletin of mathematical biology 42 (1980), S. 17-36 
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    Notes: Abstract A theory of antigen-antibody induced particulate aggregation is developed by investigating the stability of model systems of particles. Conditions for the formation of large aggregates are derived by imposing the requirement that at equilibrium a statistically significant number of redundant bonds would occur in a reduced monomer-dimer model system. A relationship is obtained which predicts the fractional agglutination in the reduced dimer system as a function of the antigen, antibody and particulate concentrations: $$\frac{g}{{2f c_0 (1 - g)^{2^ - } }} = \frac{{s_1 }}{r} + \frac{{s_1 s_2 }}{{2!r^2 }} + ... + \frac{{s_1 s_2 ...s_j }}{{j!r^j }},$$ wherec 0 is the initial concentration of monomer,f is a proximity factor,g is the fractional agglutination,s i is the average rate of formation of theith bond from an (i−1)th bound dimer, andr is the average rate of dissociation of a single antibody-antigen bond.
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    Bulletin of mathematical biology 42 (1980), S. 37-56 
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    Notes: Abstract The roles of the concentrations of the three interacting constituents in the aggregation process (antibodies, antigens and particulates) are analyzed in detail. It is shown that the basic equation derived in Part I is consistent over a broad range of conditions with experimental findings previously reported.
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    Bulletin of mathematical biology 42 (1980), S. 57-78 
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    Notes: Abstract A general mathematical model describing the biochemical interactions of the hormones luteinizing hormone releasing hormone (LHRH), luteinizing hormone (LH) and testosterone (T) in the male is presented. The model structure consists of a negative feedback system of three ordinary differential equations, in which the qualitative behavior is either a stable constant equilibrium solution or oscillatory solutions. A specific realization of the model is used to describe the experimental observations of pulsatile hormone release, its experimental suppression, the onset of puberty, the effects of castration, and several other qualitative and quantitative results. This model is presented as a first step in understanding the physicochemical interactions of the hypothalamic-pituitary-gonadal axis.
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    Bulletin of mathematical biology 42 (1980), S. 79-94 
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    Notes: Abstract Based upon the transition rate equation of dipoles in the membrane, we deal with two important aspects of interaction of nerve signals: (1) conditions for nerve excitation and (2) frequency spectrum analysis of nerve impulse. Interrelations between signal amplitudes and frequencies are formulated in detail. There are several important conclusions which can be drawn from our calculations. First, toexcite the nerve, low frequencies are generally more effective than high frequencies. Second, tosedate the nerve (i.e. to suppress undesired activities), high frequencies would suit better. Third, harmonics produced through interactions of nerve signals are not necessarily weaker than the fundamental frequencies. The great significance of our theory is that it indicates in principle the feasibility to alter or rewrite the information contents of a nerve message in our body by applying stimulations of appropriate strengths and frequencies. Thus, the theory provides a physical basis and hence some understanding for a new branch of medicine—neuro therapy such as Nogier's auriculotherapy, Lamy's phonophoresis, Voll's electroacupuncture and the fast rising TENS (transcutaneous electro-neuro stimulation).
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    Bulletin of mathematical biology 42 (1980), S. 107-117 
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    Notes: Abstract A new physical property, called resonance of the B-type is hypothetically attached to the λ =546 nm irradiated crystalline (small) molecules. In this respect an up or down configuration is assumed for those states obtained through irradiation times that are multiples of 5 sec. With these assumptions, the cellular receptors that may detect these states appear to belong to three classes: the up, down and alternatively mixed up-down. Using the classic formalism of eigenvectors and eigenvalues, a simple spectroscopic type of formula is derived, through which all the possible states of the above characteristic may be obtained.
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    Bulletin of mathematical biology 42 (1980), S. 119-130 
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    Notes: Abstract A model of ecosystems with migration is proposed from the viewpoint of flow. This model explains the following two points: (1) How the density-dependent terms in population dynamics arise as a consequence of migration. (2) How the ecosystem exhibits a hierarchy in energy per unit biomass.
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    Bulletin of mathematical biology 42 (1980), S. 143-145 
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    Bulletin of mathematical biology 42 (1980), S. 95-106 
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    Notes: Abstract For precise boundary conditions of biological relevance, it is proved that the steadily propagating plane-wave solution to the Fisher equation requires the unique (eigenvalue) velocity of advance 2(Df)1/2, whereD is the diffusivity of the mutant species andf is the frequency of selection in favor of the mutant. This rigorous result shows that a so-called “wrong equation”, i.e. one which differs from Fisher's by a term that is seemingly inconsequential for certain initial conditions, cannot be employed readily to obtain approximate solutions to Fisher's, for the two equations will often have qualitatively different manifolds of exact solutions. It is noted that the Fisher equation itself may be inappropriate in certain biological contexts owing to the manifest instability of the lowerconcentration uniform equilibrium state (UES). Depicting the persistence of a mutantdeficient spatial pocket, an exact steady-state solution to the Fisher equation is presented. As an alternative and perhaps more faithful model equation for the propagation of certain species properties through a homogeneous population, we consider a reaction-diffusion equation that features a cubic-polynomial rate expression in the species concentration, with two stable UES and one intermediate unstable UES. This equation admits a remarkably simple exact analytical solution to the steadily propagating plane-wave eigenvalue problem. In the latter solution, the sign of the eigenvelocity is such that the wave propagates to yield the “preferred” stable UES (namely, the one further removed from the unstable intermediate UES) at all spatial points ast→∞. The cubic-polynomial equation also admits an exact steady-state solution for a mutant-deficient or mutant-isolated spatial pocket. Finally, the perpetuating growth of a mutant population from an arbitrary localized initial distribution, a mathematical problem analogous to that for ignition in laminar flame theory, is studied by applying differential inequality analysis, and rigorous sufficient conditions for extinction are derived here.
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    Bulletin of mathematical biology 42 (1980), S. 191-220 
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    Notes: Abstract The binding of mono-, di- and trivalent cations to negatively charged surfaces is studied within the framework of a modified Gouy-Chapman equation. For any given combination of ions of the above valences, the existence and uniqueness of the solution for the surface potential is shown. The treatment provides the surface potential and charge density. For a system containing only monovalent and divalent ions, analytical solutions are given. When trivalent ions are also present, a procedure based on numerical integration is described. The distance dependence of the electrostatic potential for planar surfaces is given. The calculations provide the amount of cations tightly bound and the amount trapped in the double layer region. The competition between cations for binding to surfaces is elucidated.
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    Bulletin of mathematical biology 42 (1980), S. 221-238 
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    Notes: Abstract This paper deals with a model describing the behavior of barium-treatedApalysia neurons. The model is represented by a dynamical system, so-called “complete system”, defined in R4 and depending on a small parameter. The study of this system under zero membrane current conditions was performed with the use of the qualitative theory of singular perturbations. We show that this system has a stable periodic solution of the discontinuous type when the small parameter tends to 0+. A reduced system defined in R3, associated to the complete system was also studied: it corresponds to a constant activation of the inward current. We demonstrate that the corresponding hypothetical cell remains silent under zero current conditions.
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    Notes: Abstract In the study of chemical modification of enzymes and other biologically active proteins, plots of fractional residual activity as a function of number of groups modified per enzyme molecule are often used to establish a correlation between the chemical modification and enzyme inactivation reactions and to determine the stoichiometry of the modification reaction. This paper presents a critical examination of the underlying theoretical framework of such graphs. Whereas these plots are usually presented as linear functions, it is shown here that the general equation describing the relationship between inactivation and modification contains an exponential term; therefore, in the general case, the plot is actually a curve. It is suggested that caution be exercised in the interpretation of such plots and that equations such as those derived in the text be used to fit theoretical curves to the data, in order to maximize the information gained from chemical modification experiments.
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  • 90
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    Bulletin of mathematical biology 42 (1980), S. 257-265 
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    Notes: Abstract This communiction argues that so-called “hermaphroditic” tracer systems, which are neither open nor closed, do not exist physically. The argument is based on the assumption that any observable (possibly nonhomogeneous) macroscopic compartment can be approximated by a compartmentC with a finite number of entry points for the tracer, each associated with an abstract subcompartment ofC. It is shown that the “hermaphroditic” property requires that the mean waiting time be infinite in at least one of the subcompartments, or in a subcompartment elsewhere in the system. A subcompartment with infinite mean waiting time must have some sort of memory, of infinite duration, which knows how long a given particle has been retained, however long that is, and thereby determines its probability of departure. Assuming, as seems likely, that no physical basis exists for such an infinite memory, it follows that “hermaphroditic” systems do not exist.
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  • 91
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    Bulletin of mathematical biology 42 (1980), S. 273-274 
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  • 92
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    Bulletin of mathematical biology 42 (1980), S. 275-275 
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  • 93
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    Bulletin of mathematical biology 42 (1980), S. 277-281 
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  • 94
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    Bulletin of mathematical biology 42 (1980), S. 267-272 
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    Notes: Abstract The implication of state space structure on the existence of a repeatable experimentE designed to determine if a states∈L has propertyP or notP is investigated. It is shown that if a state spaceL is connected, then no experimentE is repeatable. This formalism is used to demonstrate that if a propertyP has an associated set of points inL which is dense with dense complement inL, then there exists no repeatable experimentE which can be used to test whethers has propertyP or notP. Other consequences of this formalization are discussed.
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  • 95
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    Bulletin of mathematical biology 42 (1980), S. 282-282 
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  • 96
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    Bulletin of mathematical biology 42 (1980), S. 283-294 
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    Notes: Abstract It has been shown that the resistance of flow and the wall shear increase with the size of the stenosis but these increases are comparatively small due to non-Newtonian behaviour of the blood indicating the usefulness of its rheological character in the functioning of the diseased arterial circulation.
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  • 97
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    Bulletin of mathematical biology 42 (1980), S. 327-337 
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    Notes: Abstract The modern theory of generalized Hamiltonian systems is used to construct a unified canonical description of the linear Lagrangian biodynamics introduced by Kerner.
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  • 98
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    Bulletin of mathematical biology 42 (1980), S. 305-325 
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    Notes: Abstract The purpose of this paper is to justify an asymptotic method developed for the study of peristaltic transport in a tube of arbitrary cross section. Within the framework of long wave approximation, the three-dimensional nonlinear Navier-Stokes equations are reduced to a sequence of two-dimensional linear boundary value problems of Laplace and biharmonic operators. It is shown that, if a Reynolds number is less than some constant, the solution of the approximate equations is indeed an asymptotic approximation to the exact solution of the problem as the ratio of the maximum radius of the tube to the wave length of the peristaltic motion of the wall tends to zero, and the error estimates are expressed inL 2 norms. Furthermore, under the same condition the exact solution is shown to be unique and stable under arbitrary perturbation of spatially periodic disturbance. Application of the stability condition to peristaltic transport in a tube of circular cross section is given.
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  • 99
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    Bulletin of mathematical biology 42 (1980), S. 295-304 
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    Notes: Abstract A mathematical analysis, including existence and uniqueness, is given for some boundary value problems which model the flow of a fluid-solute mixture in a tube which is placed in an interstitium. The model permits an interchange of fluid and solute across the tube walls.
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  • 100
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    Bulletin of mathematical biology 42 (1980), S. 339-364 
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    Notes: Abstract The vertebrate nervous system has topographic interconnections in many parts, known for example as retinotopy, somatotopy, etc. It is plausible that modifiable synapses play an important role in forming and refining these connections together with the sensory experiences. To elucidate the mechanism of topographic organization, we propose a simple model consisting of two nerve fields connected by modifiable excitatory synapses. The model also includes modifiable inhibitory synapses. The behavior of the model is described by a set of simultaneous non-linear integro-differential equations. By analyzing the equations, we obtain the equilibrium solution of topographic connections. It is also proved that a part of the presynaptic field which is frequently stimulated comes to be mapped on a large area of the postsynaptic field so that it has a good resolution.
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