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  • AERODYNAMICS  (813)
  • Computational Chemistry and Molecular Modeling  (521)
  • Adaptation
  • 1980-1984  (678)
  • 1975-1979  (661)
  • 1980  (678)
  • 1979  (661)
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  • 1980-1984  (678)
  • 1975-1979  (661)
Year
  • 1
    Electronic Resource
    Electronic Resource
    Springer
    European biophysics journal 5 (1979), S. 231-235 
    ISSN: 1432-1017
    Keywords: Visual pigment ; Photoreceptor ; Metarhodopsin ; Adaptation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Physics
    Notes: Abstract We show that the effect of an adapting light on the sensitivity of barnacle photoreceptors depends on the direction of net pigment transfer [rhodopsin (R) to metarhodopsin (M) or reverse] occasioned by the adapting light. For stimuli giving no net pigment transfer the state of the pigment appears irrelevant, R → R having the same effect as M → M. With respect to these, R → M gives enhanced facilitation and M → R depressed facilitation. This suggests a correlation with the prolonged depolarising after-potential (PDA) and the anti-PDA, which follow R → M and M → R stimuli respectively. These effects appear mainly in less sensitive cells and for higher amounts of conditioning light — but still well within the physiological range and well below the threshold for PDA and anti-PDA induction. The special interest of these results is that they appear to be interpretable only by assuming that absorption of light by metarhodopsin exerts an effect on the stimulus coincident response (LRP), the first demonstration of such an effect.
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  • 2
    ISSN: 1432-1017
    Keywords: Receptor potential ; Intracellular and extracellular calcium concentration ; Intensity dependence ; Adaptation ; Sensitivity control
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Physics
    Notes: Abstract The light-induced membrane voltage response (receptor potential, ReP) and the absorption change of the intracellularly injected calcium indicator arsenazo III (arsenazo response) were recorded simultaneously in Limulus ventral nerve photoreceptor cells. A double pulse technique was applied for stimulation. After pressure injection of the indicator into the cell absorption changes were measured at 646 nm to obtain a measure of the changes of the intracellular calcium ion concentration. 1. The size of the arsenazo response increases with increasing intensity of the light stimulus. The intensity dependence of the size of the arsenazo response δAmax shows almost no correlate with the peak amplitude of the ReP, but correlates rather well with the time integral of the ReP. 2. Decreasing light adaptation (caused by prolongation of the repetition time of the pulse pairs) leads to an increase in size of the arsenazo response. Also here δAmax correlates better with the time integral of the ReP than with its peak amplitude. 3. Lowering the calcium concentration in the superfusate (from 10 mmol/l to ca. 40 Μmol/l) causes after ca. 10 min a drastical diminution of the arsenazo response to values below the noise level, and a less marked reduction in size of the ReP. The falling phase of the ReP is slower. After return to normal calcium concentration the arsenazo response recovers partly in ca. 50 min, while the ReP recovers faster. The results show two opposite correlations between ReP and arsenazo response: Increase in size and duration of the ReP causes a greater transient increase of the intracellular calcium ion concentration. This in turn tends to reduce and shorten the ReP. Which effect dominates obviously depends on the conditions of the experiment: when the calcium concentration in the superfusate is reduced to ca. 40 Μmol/l a slow decrease of the ReP is accompanied by a small increase of the intracellular calcium ion concentration.
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  • 3
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    Springer
    Plant ecology 43 (1980), S. 83-86 
    ISSN: 1573-5052
    Keywords: Adaptation ; Colonization ; Environmental stochasticity ; Phenology ; Weather variation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Plant species co-inhabiting a given geographical region often have distinetly different times of flowering. It is shown that such phenological spread, duc to short-term stochastic variation in weather variables, relaxes competition for empty sites to be colonized by diaspores. For sufficiently large spreads stable coexistence becomes possible. The applicability of the proposed hypothesis to the observed instances of phenological spread is discussed and shown to extend beyond that of other current theories.
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  • 4
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    Protoplasma 99 (1979), S. 99-115 
    ISSN: 1615-6102
    Keywords: Adaptation ; Diatoms ; Environment ; Resting-spores ; Sexual reproduction ; Valve formation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary The species-specific form and structure of the diatom shell is variable within a given genetical reaction-norm, depending on the dynamic interrelation between cell and environment. The appearing modifications—based on quantitative disarrangement of construction-units as well as on a change in size and outline—can be understood as the morphological expression of a changed metabolism which has become necessary for adaption to adverse conditions. The diatoms react very sensitively, especially to the salinity factor, whereby actually two alternatives of adaption occur: a vegetative, in building resting spores (f.i., Navicula cuspidata) and a generative (f.i., Anomoeoneis sphaerophora, Surirella peisonis). Teratologies have been found in totally unbalanced surroundings (especially under conditions of ion unbalance), where the usually symmetrical forms have lost the coordination of the construction-units to each other (f.i., Surirella peisonis). They supply good criteria in clarifying the problems concerning pattern development.
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  • 5
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    Environmental biology of fishes 5 (1980), S. 191-224 
    ISSN: 1573-5133
    Keywords: Adaptation ; Benzidine stain ; Catostomid ; Discontinuity theory ; Ecomorphology ; Embryology ; Fish ; Haemoglobin stain ; Hatching ; Peroxidase ; Thresholds
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Frequent and detailed observations of arbitrary stages revealed a saltatory pattern of development in the early ontogeny of fluvial spawning white sucker. Considered as adaptations for respiration were: i) expansion of the surface area of the yolk through a change in yolk shape, ii) the presence of carotenoid pigment in the yolk, iii) a large caudal vein sinus, iv) coverage of the yolk surface with capillaries of bilaterally paired vitelline plexi, and v) a large pair of vitelline veins. The ability to swim developed slowly and well after hatching. Young suckers would therefore spend most of the eleutheroembryonic phase in the interstices of the rock substrate of the spawning ground. The change from a benthic to pelagic mode of existence occurred with swimbladder inflation and before the start of exogenous feeding.
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  • 6
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The results of calculations of the transition energies and polarization in nucleotide bases performed by the CNDO/S CI method are compared with experimental data for long-wavelength and vacuumabsorption bands. The calculations and the analysis of experimental data testify to the existence of n - π* transitions in the first absorption bands of the bases. The study of double-stranded polynucleotides and DNA hypochromism based on the theoretical electronic characteristics of the bases and perturbation theory is performed. The role of stacking and complementary interactions within the hypochromic effect is cleared up. Two mechanisms for the shift of the fluorescence band maximum are investigated: two-proton transfer along H bonds and excimer formation. The study of H-bond potential curves shows the disadvantage of two-proton phototautomerism in the nucleotide base pairs in contrast to model systems. The possibility of excimer state formation in stacked homo- and heterodimers of nucleotide bases is shown within the extended-Hückel treatment. The nature of excimer minimum for the excited-state potential curve is analyzed.
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  • 7
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    International Journal of Quantum Chemistry 17 (1980), S. 531-547 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The time-dependent Hartree-Fock (TDHF) equations are derived up to the second order when the system is perturbed by a monochromatic plane wave. The solutions of the equations are subjected to the orthonormalization conditions satisfied by the orbitals. In the equations, these conditions are expressed by the appearing of coefficients λjkn,ε playing the part of Lagrangian multipliers. Relations between the coefficients λjkn,ε are established. These relations are equivalent to the above-mentioned orthonormalization conditions. This equivalence enables us to substitute for the solution of an integrodifferential equation system subject to constraint conditions, that of a free system. The TDHF equations obtained determine the first- and second-order orbital perturbations, which no doubt verify the orthonormalization conditions. These orbitals can be used in the calculation, up to second order, of different nonlinear optical effects.
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  • 8
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    International Journal of Quantum Chemistry 17 (1980), S. 596-596 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 9
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    International Journal of Quantum Chemistry 17 (1980), S. 619-629 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Pair correlation in the ground state of the Li isoelectronic sequence is studied through four approximate wave functions which incorporate inter- and intrashell pair correlation. Of these functions, two possess symmetry appropriate to a three-electron system, while two do not. The functions are not variational functions in the usual sense. They are instead fixed linear combinations of products of orbitals and pair functions for the appropriate states of two-electron atoms. They are considered here as zero-order approximations to the exact wave functions, and the corresponding zero-order Hamiltonians are obtained. The simplest of these functions is improved by the introduction of a screening parameter for the “outer” electron. This latter function is found to be a satisfactory compromise between accuracy and simplicity and is proposed for study via higher-order perturbation theory.
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  • 10
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    International Journal of Quantum Chemistry 17 (1980), S. 599-608 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio calculations of various expectation energies have been made for the reactant and product species in six reactions that involve only small linear molecules. The reactions include fission by hydrogen, addition of hydrogen, exchange of triply bonded atoms, fluorination, and oxygen atom transfer. The change in total electronic energy is not invariably the result of changes in inner shell energy and outer shell σ- and π-electron energies simply augmenting each other, but in several cases there is a complex interplay of opposing effects. This approach gives a different insight into the energetic aspects of changes in bonding from that derived from the concept of shared electron pairs in σ and π bonds together with lone pairs in valence shells. Changes in π-electron energy are shown to be important in a reaction in which neither reactant nor product molecules contain π bonds in the usual chemical sense. While in a reaction in which there is a complete change in the nature of the triple bonds, and hence the π bonding, the change in π-electron energy makes a smaller contribution than either the change in inner shell or the outer shell σ-electron energies.
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  • 11
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We use a previously proposed variation-perturbation method to calculate the electric polarizabilities and the electric dipole moment at equilibrium nuclear distance of the BH molecule. We obtain 3.56 × 10-24 cm3 for the perpendicular polarizability αxx and 3.22 × 10-24 cm3 for the parallel polarizability αzz. Our result for the electric dipole moment μ0 is 1.734 debye units; there is no reliable experimental result to compare it with.
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  • 12
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    International Journal of Quantum Chemistry 17 (1980), S. 549-586 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The resonance energy of conjugated benzenoid systems is expressed as contributions arising from independent conjugated circuits. The scheme has been applied to numerous very large conjugated systems. In many cases, it was possible to find regularities in the increments for the resonance energy within a family of benzenoid systems as the number of benzene rings is increased.
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  • 13
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    International Journal of Quantum Chemistry 17 (1980), S. 595-595 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 14
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    International Journal of Quantum Chemistry 17 (1980), S. 609-618 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A previously given iterative procedure to improve wave functions is analyzed. Its relationship with other well-known approximation methods is investigated. Hypervirial operators depending on a real parameter are proposed and their connection with the employment of an infinite number of hypervirial relations is analyzed. A way to use formulas that are valid for exact eigenfunctions in the case of approximate functions is presented. Formal results are applied to the harmonic oscillator and hydrogen atom models in order to show their practical utilization.
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  • 15
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    International Journal of Quantum Chemistry 17 (1980), S. 651-671 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio MO calculations, using both minimal (STO-3G) and extended (Roos-Siegbahn) basis sets are reported for the systems methanethiol-imidazole, methanethiol-imidazole-formaldehyde, and methanethiol-imidazole-formamide, which, together with a point-change representation of a long α-helix, form models for the active site of papain. It is shown that the large electric field exerted by the helix in the active-site region is responsible for the presence of the essential residues Cys 25 and His 159 in the form of an ion pair RS- ··· ImH+, which is crucial for a recently proposed mechanism for the catalytic action of the enzyme. Also, an explanation is given for the anomalies in measured pK values for these residues. Detailed studies on the (sub)systems show that minimal basis sets lack the flexibility necessary for describing the type of proton transfer involved. We conclude that α-helices are essential parts of enzymes and that they play a significant role in the catalytic process.
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  • 16
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    International Journal of Quantum Chemistry 17 (1980), S. 679-687 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A generalization of optimized diatomics-in-molecules method that provides an accurate treatment of overlap integrals is presented. The possibilities of the method to reproduce potential surfaces of the 4B2, 2B2, and 2A1 states of the H3 molecule are investigated. It is shown that satisfactory results can be achieved only for a single state under consideration, but not for the three states simultaneously.
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  • 17
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    International Journal of Quantum Chemistry 17 (1980), S. 719-724 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Ab initio SCF calculations carried out on the planar cluster CuCl42- suggest that the strong satellites at the high-binding energy side of inner-shell ESCA lines of Cu are due to charge relaxations in the σ-bonding orbitals which mix with Cu 3d. The satellite state with the largest intensity may be described as a one-electron excitation Cu 3d → Cl 3p.
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  • 18
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    International Journal of Quantum Chemistry 17 (1980), S. 975-982 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A modification of the overlap approximation for triplet pair correlation energies is presented. The modification allows the use of either the canonical absolute overlap or the minimum absolute overlap. When applied to the b 3∑u+ state of H2, this approximation reproduces the observed correlation energy to within 0.0002 hartree (or ±3%) for all internuclear distances from 1.3 bohr to infinity.
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  • 19
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    International Journal of Quantum Chemistry 17 (1980), S. 1039-1041 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 20
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    International Journal of Quantum Chemistry 17 (1980), S. 1042-1042 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 21
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    International Journal of Quantum Chemistry 17 (1980), S. 1069-1074 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Le rǒle de la nonadditivité pour l'énergie d'interaction entre trois molécules de LiH a été examiné dans le cadre de la méthode ab-initio-SCF. La partie nonadditive de l'énergie d'interaction est plus importante pour une structure cyclique que pour un trimère linéaire; elle est stabilisante dans les deux cas. La valeur du rapport entre les termes à deux et à trois corps pour des points différents sur l'hypersurface de l'énergie est discutée.
    Abstract: Die Bedeutung der Nichtadditivität in der Wechselwirkungsenergie zwischen drei LiH-Molekülen ist im Rahmen des ab-initio-SCF-Verfahrens untersucht worden. Der nichtadditive Teil der Wechselwirkungsenergie ist wichtiger für eine zyklische Struktur als in einem linearen Trimer; er ist in beiden Fallen stabilisierend. Das Verhältnis zwischen Zwei- und Dreikörperglieder für verschiedene Punkte auf der Energiehyperfläche wird diskutiert.
    Notes: The role of nonadditivity of the interaction energy between three LiH molecules was investigated within the SCF ab initio framework. The nonadditive part of the interaction energy is more important in the case of a cyclic structure than in a linear trimer, and is stabilizing in both cases. The value of the ratio of three-body and two-body terms for different points on the energy hypersurface is discussed.
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  • 22
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    International Journal of Quantum Chemistry 17 (1980), S. 1099-1109 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Des développments gaussiens complètement optimisés des fonctions hydrogénoïdes de type 1s, 2pz, 3dxy, et 4fxyz ont été pratiquement reproduits par une construction spéciale des paramètres variationnels. L'utilité des fonctions génératrices utilisées est discutée brièvement.
    Abstract: Vollständig optimisierte Gaussentwicklungen wasserstoffähnlicher Funktionen von Typ 1s, 2pz, 3dxy, und 4fxyz sind mittels eines speziellen Verfahrens für die bestimmung der Variationsparameter praktisch reproduziert worden. Der Nutzen der angewandten erzeugenden Funktionen wird kurz diskutiert.
    Notes: Fully optimized lengthy Gaussian expansions of hydrogenic 1s and 2pz functions have been practically reproduced by generating the variational parameters by means of suitably chosen functions involving only few parameters. Hydrogenic 3dxy and 4fxyz functions have been approximated in a similar way. The usefulness of such generating functions is briefly discussed.
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  • 23
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    International Journal of Quantum Chemistry 17 (1980), S. 1125-1141 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: L'approximation HF présentée dans la partie I a été testée par rapport à plusieurs propriétés moléculaires. Trois niveaux d'aproximation différents a, b, et c sont considérés. Des résultats satisfaisants - en comparaison avec des calculs HF “exacts” - sont obtenus avec la base STO-3G et le niveau a. A ce niveau-ci l'erreur dans l'énergie de liaison est de 0.001-0.025 a.u. pour toutes les molécules considérées, qui contiennent jusqu'à six atomes de la première ligne comme par exemple le cyclopentanone (C5OH8). L'erreur dans les énergies de réaction traitées ici est d'environ 4 kcal/mol (l'erreur maximale est de 9 kcal/mol). Les énergies orbitalaires, les moments dipolaires, les charges brutes, les géométries d'équilibres et les barrières de rotation interne sont bien reproduits par notre méthode à tous les trois niveaux.
    Abstract: Die HF-Näherungsmethode, welche im Teil I vorgestellt wurde, wird an einigen Moleküleigenschaften getestet. Drei Näherungsstufen a, b, und c werden untersucht. Zufriedenstellende Ergebnisse - verglichen mit entsprechenden “exakten” HF-Rechnungen - erhält man mit der STO-3G Basis und der Näherungsstufe a. Bei dieser Näherung ist der Fehler in der Bindungsenergie 0.001-0.025 a.u. für alle untersuchten Moleküle, welche bis zu 6 Atome der 1. Reihe enthalten, wie z.B. Cyclopentanon (C5OH8). Der Fehler in den hier behandelten Reaktionsenergien beträgt etwa 4 kcal/mol (der maximale Fehler beträgt 9 kcal/mol). Orbitalenergien, Diplolmomente, Bruttoladungen, Gleichgewichtsgeometrien und Rotationsbarrieren werden durch die Näherungsmethode bei allen Näherungsstufen gut wiedergegeben.
    Notes: The HF approximation method that was outlined in Paper I is tested with respect to several molecular properties. Three different levels of approximation a, b, and c are considered. Satisfactory results - compared to corresponding “exact” HF calculations - are obtained with the STO-3G basis and the approximation level a. At this level the error in the binding energy is 0.001-0.025 a.u. for all considered molecules which contain up to six first-row atoms as, e.g., cyclopentanone (C5OH8). The error in the reaction energies considered here is about 4 kcal/mol (the maximal error is 9 kcal/mol). Orbital energies, dipole moments, gross charges, equilibrium geometries, and barriers to internal rotation are well reproduced by the approximation method at all three levels.
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  • 24
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    International Journal of Quantum Chemistry 17 (1980), S. 995-1006 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The influence of side-chain disorder on the electronic structure of proteins has been investigated in the case of polypeptides containing two or three different amino acid residues. It has been found that due to the different potentials of different side-chain groups, the original valence and conduction bands of the homopolypeptides are split into narrow bands. The comparison of the densities of electronic states in simple homopolypeptides and in composite polymers shows that new forbidden regions in the energy spectrum of proteins may develop. The consequences of these effects for the semiconductive properties of proteins are discussed.
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  • 25
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    International Journal of Quantum Chemistry 17 (1980), S. 1031-1037 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In a previous paper, a scheme of integral approximation was proposed, in which a large number of two-electron integrals containing a certain kind of orbital pairs, i.e., weakly related pairs, can be neglected. A new criterion for partitioning orbital pairs into two groups, i.e., strongly and weakly related pairs, is introduced in order to allow for neglect of more integrals without sacrificing the accuracy of a computation. Test calculations on the BH3—C2H4 complex show that by the use of the new version, results of roughly the same accuracy as was obtained by the old version is obtained by retaining 80% of the integrals used in the old version. This kind of saving is more significant for larger molecules. For example, in a calculation on Cu-porphine with 203 CGTO'S, the revised version will require about 2.0 × 106 integrals, while the original version will require about 4.5 × 106. And these two approximate calculations are expected to give the results of roughly the same accuracy.
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  • 26
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Cooperative phenomena may be involved in the biological effects of magnetic fields (H), since its effects on isolated atoms or ions, at room temperature, are very weak. It is suggested that interactions at the social level can considerably increase the efficiency of H in orienting the displacements of animals. This effect is discussed with a simple mathematical model inspired on superparamagnetism. In case of very weak interactions of H with isolated animals, it suggests that orientation could only be made visible through cooperativity at the social level. These results are generalized to other physical stimuli and effects, leading to the concept of cooperative sensory response, i.e., a group response to an external physical agent even when its effect on isolated members of the group is undetectable.
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  • 27
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: En déterminant les paramètres des jeux de base dans des environnements moléculaires par d'autres critères que l'énergie totale, il est démontré qu'une généralisation de la base pour des fragments moléculaires peut ětre obtenue, dans laquelle les propriétés géométriques et celles de la structure électronique sont prédites considérablement mieux qu'avec des bases de taille semblable. Comme premier pas dans le développement d'une série de bases avec une flexibilité et une précision de plus en plus prononcée, on a construit plusieurs jeux de base de type simple zéta avec une contraction gaussienne pour chaque orbitale de base. Les meilleures de ces bases donnent des propriétés géométriques et électroniques pour une série de molécules organiques avec'une précision meilleure que celle obtenue par la base correspondante de type STO-2G et semblable dans la plupart des cas à STO-3G. En outre cette base peut ětre utilisée soit avec des gaussiennes cartésiennes, soit avec des gaussiennes sphériques flottantes.
    Abstract: Durch eine Bestimmung von Basissatzparametern in Molekülumgebungen mit anderen Kriterien als der Gesamtenergie wird gezeigt, dass eine Verallgemeinerung des Molekülfragmentsbasissatzes erhalten werden kann, mit welchem geometrischen und Elektronstruktureigenschaften beträchtlich besser als mit anderen Basissätzen ähnlicher Grösse vorhergesagt werden können. Als erster Schritt in der Entwicklung einer Reihe von Basissätzen mit sukzessiv grösserer Flexibilität und Genauigkeit werden mehrere Basissätze von Einzelzetatyp durch eine Gauss'sche Kontraktion für jedes Basisorbital konstruiert. Mit den besten dieser Basissätze werden geometrische und elektronische Eigen-schaften für eine Reihe von organischen Molekülen mit besserer Genauigkeit als dem entsprechenden STO-2G Basissatz und in vielen Fallen ähnlich dem STO-2G Satz erhalten. Weiter wird gezeiget, dass dieser Basissatz mit sowohl Cartesischen als fliesseden sphärischen Gaussfunktionen vereinbar ist.
    Notes: By determining basis set parameters in molecular environments using other criteria than total energy, it is shown that a generalization of the molecular fragment basis can be obtained in which calculated geometric and electronic structural properties are predicted substantially better than with other basis sets of similar size. As a first step in the development of a series of basis sets having successively greater flexibility and accuracy, several single-zeta basis sets are created, using a two-Gaussian contraction for each basis orbital. The best of these basis sets produced calculated geometric and electronic properties for a series of molecules that model a wide variety of organic molecules that are of better accuracy than the corresponding STO-2G basis, and similar in most cases to STO-3G. In addition, the basis set is shown to be applicable in either a Cartesian Gaussian basis or a floating spherical Gaussian basis.
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  • 28
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    International Journal of Quantum Chemistry 17 (1980), S. 1111-1123 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Une méthode est proposée, qui réduit considérablement le travail numérique dans un calcul HF en réduisant le nombre d'intégrales à deux électrons qui doivent ětre calculées. Les procédés suivants sont utilisés: (i) la densité électronique est approximée par un petit nombre de fonctions pour la partie de Coulomb de la matrice HF; (ii) cette densité approchée est modifiée pour améliorer son potentiel; (iii) dans la partie d'échange une fonction de base χ est remplacée par une fonction \documentclass{article}\pagestyle{empty}\begin{document}$ \tilde \chi $\end{document} avec un nombre moindre de lobes gaussines; (iv) l'érreur causée par ce remplacement-ci est réduite par une modification des densités \documentclass{article}\pagestyle{empty}\begin{document}$ \tilde \chi _i \tilde \chi _j $\end{document} dans les intégrales d'échange. Le temps de calcul pour les intégrales est réduit par un facteur 6 pour des molécules contenant cinq atomes de la première ligne comme par exemple CF4, si l'on utilise une base 7S/3P contractée à (5, 1, 1/3). Le temps augmente approximativement avec n3, si n est le nombre de lobes gaussiens.
    Abstract: Eine Methode wird vorgeschlagen, welche den numerischen Aufwand von Hartree-Foch Rechnungen dadurch verringert, indem die Zahl der zu berechnenden Zweielektronenintegrale reduziert wird. Dabei werden folgende Konzepte verwendet: (i) Zur Berechnung des Coulombanteils der HF Matrix wird die Elektronendichte durch wenig Funktionen approximiert. (ii) Die approximierte Dichte wird so modifiziert, daß ihr Potential verbessert wird. (iii) Zur Berechnung des Austauschanteils wird eine Basisfunktion χ durch eine Funktion \documentclass{article}\pagestyle{empty}\begin{document}$ \tilde \chi $\end{document} ersetzt, welche weniger Gauss-lobes enthält. (iv) Der dadurch hervorgerufene Fehler wird durch eine Änderung der in den Austauschintegralen vorkommenden Dichten \documentclass{article}\pagestyle{empty}\begin{document}$ \tilde \chi _i \tilde \chi _j $\end{document} reduziert. Für Moleküle, welche 5 Atome der 1. Reihe enthalten, wie z.B. CF4, wird die Rechenzeit für den Integralteil um den Faktor 6 reduziert, wenn eine 7S/3P Basis kontrahiert zu (5, 1, 1/3) verwendet wird. Die Integralzeit nimmt etwa mit der 3. Potenz der Zahl der Gauss-lobes zu.
    Notes: A method is proposed that reduces the computational effort of HF calculations considerably by reducing the number of two-electron integrals that have to be calculated. The following concepts are used: (i) approximation of the electron density by only few functions for the Coulomb part of the HF matrix; (ii) modification of this approximate density, to improve its Coulomb field; (iii) in the exchange part, a basis function χ is replaced by a function \documentclass{article}\pagestyle{empty}\begin{document}$ \tilde \chi $\end{document} consisting of fewer Gaussian lobes; (iv) the error caused by this replacement is reduced by a modification of the densities \documentclass{article}\pagestyle{empty}\begin{document}$ \tilde \chi _i \tilde \chi _j $\end{document} in the exchange integrals. The computation time of the integral part is reduced by a factor 6 for molecules containing five first-row atoms as, e.g., CF4, if one uses a 7S/3P basis set contracted to (5, 1, 1/3). The integral time increases roughly with n3, if n is the number of Gaussian lobes.
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    International Journal of Quantum Chemistry 15 (1979) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 30
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    International Journal of Quantum Chemistry 15 (1979), S. 121-129 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The molecular electrostatic potentials computed by the overlap-multipole-expansion procedure (OMTP) are compared to exact electrostatic potentials computed with the same Gaussian basis set, for different molecular species. It is shown that at distances of the molecule larger than 2.2 Å, the OMTP values compared to those of the exact ones are within an error of 0.5 kcal/mol. This error decreases with increasing distance. For distances below this limit the OMTP potentials may be used as a first indication of the trends of the molecule, provided the values to compare are not too close.
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    International Journal of Quantum Chemistry 15 (1979), S. 109-120 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The random-walk method of solving the Schrödinger equation is applied to the 1B1g and 1B2g states of the H4 square with side length 2.4 a.u. The results provide an independent check of the accuracy of prior variational calculations for these states. With node structures for the 1B1g state taken from a variational calculation with a single-zeta basis set and taken in the simplest form meeting symmetry requirements, the calculated energies are lower than the expectation value of the energy for the single-zeta basis set but not as low as the expectation value for an optimized-exponent double-zeta basis set with polarization terms. Comparisons of results give no suggestion of a barrier height lower than ∼120 kcal/mol for passage through the square configuration in the exchange reaction H2 + D2 → 2HD. For the 1B2g state with node structure in the simplest form meeting symmetry requirements the calculated energy is ∼65 kcal/mol lower than the expectation value of the energy for variational calculations with a double-zeta basis set.
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    International Journal of Quantum Chemistry 15 (1979), S. 135-145 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Two distinct approaches to the calculation of first-order properties with a limited CI wave function are discussed. One is based on the Hellmann-Feynman theorem and the other on the direct evaluation of the total energy derivative at zero perturbation. Corrections to the Hellmann-Feynman expectation value are given for the CI wave function consisting of a single determinant reference state and all single and double replacements of this. These corrections are the extended Brillouin matrix elements and involve interactions between the zeroth-order wave function and triply substituted configurations. The usefulness of these matrix elements for the generation of MC SCF orbitals and for the calculation of cluster corrections to the wave function is briefly discussed. The formulas for the Brillouin matrix elements expressed in terms of one- and two-electron integrals have been automatically generated using the syntax of the algebraic program SCHOONSCHIP.
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  • 33
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    International Journal of Quantum Chemistry 18 (1980) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 34
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    International Journal of Quantum Chemistry 18 (1980), S. 3-9 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A hierarchy of necessary conditions that an exact density matrix of a pure state or an ensemble has to satisfy is derived, namely the hermiticity of certain operators F(k). For k = 1 this reduces to the well-known Hartree-Fock condition. It is then shown that the kth set of conditions is equivalent to stationarity of the energy with respect to unitary k-particle transformations. k-Particle generalizations of Hartree-Fock theory are then discussed both in the spirit of k-particle pseudoeigenvalue equations and in the framework of a Newton-Raphson-type constructive scheme.
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    International Journal of Quantum Chemistry 18 (1980), S. 275-280 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The binding energy spectra for the valence orbitals of hydrogen chloride have been obtained using the binary (e,2e) method at 1200 eV. The strength of the innermost valence orbital (4σ) is severely split among several ion states in the energy range 25 to 41 eV. The measured cross sections are compared with results of calculations using contracted Gaussian basis sets of double-zeta quality, and with a one-particle Green's function calculation.
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    International Journal of Quantum Chemistry 18 (1980), S. 307-310 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The charge exchange process in the intervalence (mixed-valence) system is interpreted in terms of the nonstationary state mechanism which is a well-known approach for rationalizing the molecular tautomerism process. The two kinds of processes are viewed in a close analogy in the sense that both involve a pair of near-degenerate levels in a double-well potential. However, a comparison is made between the two cases to demonstrate that an electron moves not only faster but also farther in distance than a nucleus does.
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Traditionally, the calculation of the vibrational spectra of molecules involves at one point or another a numerical differentiation procedure. Such a method has some serious drawbacks both in efficiency and in accuracy. In this paper, an alternative method based on linear response theory is presented. The second derivative of the ground-state energy is expressed in terms of the electron density response matrix by means of perturbation theory. The unperturbed wave functions are obtained from the Hartree-Fock equation. First-order perturbation theory applied to this equation leads to the Hartree-Fock linear response. As an illustration of this method the vibrational frequency of a H2 molecule is calculated. The result is 1.348 × 1014 Hz as compared to the experimental value of 1.319 × 1014 Hz. This method is also applicable in the calculation of the phonon dispersion curves of solids.
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    International Journal of Quantum Chemistry 15 (1979) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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  • 39
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    International Journal of Quantum Chemistry 15 (1979), S. 207-242 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We argue that the goal of developing a satisfactory general formalism for the justification of effective π-electron Hamiltonians, as well as for ab initio calculation of their parameters (α, β, and γ), has now been achieved. The need for a fully linked many-body formalism is emphasized; this feature requires a Rayleigh-Schrödinger (RS) type of degenerate perturbation theory. A number of apparently different degenerate RS perturbation formalisms are reviewed. Most of these formalisms are actually identical term-by-term, when their RS expansions are worked out explicitly; the formal relations that prove their complete equivalence are presented and discussed. One of these formalisms, a version developed by the author for related open-shell problems in nuclear physics, is shown to be most convenient for many-body applications. This is owing to the relatively simple and transparent nature of its general algebraic structure, which facilitates partial summation to infinite order. A simple and concise derivation is presented for the algebraic features of this preferred formalism, and its many-body (linked cluster) aspects are briefly discussed. The recent development of a nonperturbative (coupled-cluster) analog of this formalism is also described. Some practical issues are examined, including the choice of orbital basis. Illustrative numerical results are presented, based on the calculations of Iwata and Freed. Several remaining problems are described; these are both qualitative and quantitative in nature, and their resolution will require some detailed calculations.
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    International Journal of Quantum Chemistry 18 (1980), S. 393-396 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A brief account of a quantum chemistry literature data base (QCLDB) is described, which contains the key information of about 2000 papers of ab initio calculations of atoms and molecules published in 1977-1979. The QCLDB is stored in a computer and can be sorted and rearranged into author and substance indices. Selection of the items for each paper in a computer-readable data base is discussed.
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Metal chelates [(C2H2X2)2M]n with ligating atoms X = NH, O, S and central atoms M = Be2+, Mg2+, Ni2+, Zn2+ (n = 0, ± 2), and M = Li+, Cu+ (n = ± 1, -3), have been studied in our Laboratory for some years by ab initio calculations. In this article it is shown that certain features of the complexes are the same for all the different metals in our series. These features include a drastic reduction of the energy gap between unoccupied and occupied orbitals, when electrons are added to the positively charged complexes. This change of the energy gap is shown to be an effect of the ligand dimer [(C2H2X2)2]n. But this dimer can only exist when a positive ion, e.g., a metal ion, forms a bridge between the two monomers. The reduced energy gap implies a strong bathochromic shift of the electronic spectrum and low electrical resistivity.
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    International Journal of Quantum Chemistry 18 (1980), S. 457-462 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The photoisomerization of imine compounds is studied in terms of an ab initio MO CI calculation. The potential curves of the syn-anti isomerization via the rotation and the inversion are examined for benzaldimine. It is suggested that the photoisomerization is initiated through the rotation around the C—N bond in both singlet and triplet states. The ease of the photoisomerization is found to be determined by both the conformation of phenyl ring in the ground state and the energy difference of vertically excited states between two isomers.
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    International Journal of Quantum Chemistry 18 (1980), S. 493-500 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: To aid in designing new therapeutic iron chelating agents, the mechanism of iron binding to prototypic heterocyclic carboxaldehyde thiosemicarbazones has been studied. Based on molecular orbital and spectroscopic studies, iron (II) is found to bind in a covalent manner, while iron(III) seems to interact ionically. However, with both iron(II) and iron(III), chelate formation is dependent on charge interaction between the metal and the coordinating atoms of the ligand.
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    International Journal of Quantum Chemistry 18 (1980), S. 515-519 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The potential-energy curves for the movement of proton along the hydrogen-bond direction were calculated for the parent and cations produced from the β- decay of pyridine-pyrrole labeled by tritium (3H) or carbon-14(14C). For all cations the double minimum potential is predicted to be formed, and the activation energy for the proton transfer from one well to the other is about 10.0 kcal/mol, which is much lower than that in the (NH2—H—NH2)+ ion. A positional effect of nuclear transformation is scarcely expected in 3H β- decay, whereas a slight positional effect may be expected in 14C β- decay.
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    International Journal of Quantum Chemistry 18 (1980), S. 533-537 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A theoretical study has been made on the translational or “rattling” motion of homonuclear diatomic molecules encaged in β-quinol clathrates. By the use of an adjustable parameter for the van der Waals radius, experimental results have been explained fairly well.
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    International Journal of Quantum Chemistry 18 (1980), S. 501-508 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The problem of the existence of a prostaglandin (PG) receptor is still controversial, but it seems to be clear that the main action of the PGs concerns the interface of the cellular membrane (which has a predominantly lipid character) and the extracellular liquid (which mainly consists of water). Also especially in the case of the exogenous PGs, the transport of these substances in the organism in influenced by the hydrophilic-hydrophobic properties of the reactive molecules. These properties can be estimated by MO studies using a solvation model and a semiempirical method of calculation. This paper is concerned with the molecules of PGA1 and PGE1. MO studies were performed for these molecules with the CNDO/SW method in order to calculate ionization potentials, dipole moments, and molecular polarizabilities. With these computed molecular properties, the electrostatic and van der Waals interactions with water and octanol molecules are evaluated and compared within the framework of the original model. This study allows the differentiation of the hydrophilic-hydrophobic character of the PGs investigated and the comparison of the results with experimental data.
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    International Journal of Quantum Chemistry 15 (1979), S. 359-359 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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    International Journal of Quantum Chemistry 18 (1980), S. 189-191 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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    Topics: Chemistry and Pharmacology
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    International Journal of Quantum Chemistry 18 (1980), S. 607-613 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The range in ordinary space of a defect in a solid, polymer, or a large molecule is an important parameter in many physical and chemical situations like, e.g., substitutional and interstitial impurities in ionic crystals, deep and shallow energy levels in semiconductors, core holes in systems studied by photoelectron spectroscopy, and hydrogen in metals. Both the electronic structure and the lattice of the host molecule or solid are normally influenced by the defect, and it is desirable to treat, as far as possible, these two aspects together. An explicit procedure for investigating the degree of localization is proposed that is based on the direct calculation of Wannier functions and partitioning technique.
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    International Journal of Quantum Chemistry 18 (1980), S. 619-623 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Exciton transfers in the two-dimensional and spin-canted antiferromagnet (C2H5NH3)2MnCl4 were studied by investigating the absorption spectra 6A1g → 4T2g(4D) of Mn2+. A magnon side band (exciton-magnon simultaneous excitation) which has an anomalous shape with the cutoffs at the low-energy as well as the high-energy sides was observed. This anomalous shape could be reproduced in calculation as magnon side band, considering both the intersublattice and intrasublattice exciton transfers. From the analysis of this band shape, the magnitudes of the intersublattice and intrasublattice exciton transfers are estimated to be 10.2 and 6.8 cm-1, respectively. In the case of simple antiferromagnets without spin canting, the intersublattice exciton transfer process is forbidden because of the spin angular momentum. However, in the case of (C2H5NH3)2MnCl4, the prohibition of the intersublattice exciton transfer is removed by the canted-spin arrangement.
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    International Journal of Quantum Chemistry 15 (1979), S. 389-401 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: It is found that ordinary STOs fall off too fast in the atomic region in many cases. A new type of basis set, which is more adaptable to the rather different requirements of the various atomic orbitals in an atom, is developed. The suggested functional form χ(r) = Nrn-1 exp{-α[(βr + 1)1/2 - 1]} contains the STOs as a limiting case. Calculations on a series of atoms from H to Zn show that the new basis gives better results than STOs for equal basis set size. The necessary integrals do not present any problem to evaluate.
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    International Journal of Quantum Chemistry 15 (1979), S. 403-410 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The valence spectrum of CoO has been calculated using the CoO610- cluster, stabilized by an electrostatic field, as a model of bulk CoO. The wave functions were generated using basis sets of better than double-zeta quality. SCF wave functions were obtained for the ground state and for the first ionized state of the cluster. Limited CI calculations were performed using these orbital sets. The lowest states of the ion correspond to the main lines in the spectrum, while higher states can give rise to high-energy satellites to the main lines. The relative intensities of these satellites were estimated in the case of high-energy incident photons.
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    International Journal of Quantum Chemistry 15 (1979), S. 445-445 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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  • 54
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    International Journal of Quantum Chemistry 15 (1979), S. 411-421 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Pseudospectra from Gaussian basis set calculations within a frozen-core approximation have been used in a moment analysis to obtain Tchebychev profiles for the photoabsorption process in the valence shell of Ne. The profiles show good agreement with cross sections obtained in equivalent calculations using numerical atomic wave functions and continuum orbitals, particularly when the dipole-velocity form is employed. Variation of the basis sets shows that it is possible to obtain meaningful photoabsorption profiles using 13-15 virtual orbitals to describe the outgoing electron.
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  • 55
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    International Journal of Quantum Chemistry 18 (1980), S. 695-708 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new method has been proposed for calculating the Gaussian matrix elements of the interaction operator represented by an arbitrary degree of interelectron distance X12ρ. The method is based on the expansion of two-electron integrals as the sum of one-electron integrals which in turn admit compact operator representation in terms of confluent hypergeometric functions. The generating differential operator has been shown to be related to the modified Hermitian polynomials. The standard structure of the special functions encountered in this approach is useful in studying the analytical behavior of the integrals and makes it possible to obtain for these integrals recurrence relations, direct algebraic expressions in the forms of finite sum of confluent hypergeometric functions, integral representations, and asymptotic properties. Unlike the usual methods based on integral transformation of the interaction operator, the proposed approach has a wider field of application, and in addition, leads to compact and convenient analytical expressions. The idea of using differential properties of integrals to simplify the integrand structure gives the proposed approach a certain resemblance to that suggested by Boys but not developed in detail in his pioneer work.
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  • 56
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    International Journal of Quantum Chemistry 18 (1980), S. 775-782 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Properties of Hückel parameters are investigated by using a mapping concept. The mapping is constructed by means of the Linderberg relation. No efforts are made to get a numerically correct description of the Hückel parameters.
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  • 57
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    International Journal of Quantum Chemistry 18 (1980), S. 797-810 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The performance of the MINDO/3 method has been evaluated in simple heteroatomic molecules that are representative of several important biological systems. Molecular geometries are accurate to within 0.04 Å for bond lengths, and 3° for most bond angles. Dipole moments and charge distributions are estimated satisfactorily, and ionization potentials are predicted to an accuracy of 0.5 eV. The method is less accurate in estimating the ionization of some upper level σ orbitals. The overall evaluation shows that MINDO/3 provides a good description of the geometries and electronic properties of the molecules studied. The results of MINDO/3 calculations in several other chemical systems are also reviewed.
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  • 58
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    International Journal of Quantum Chemistry 18 (1980), S. 841-866 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Spin functions that are compatible with orbital ordering and geminal antisymmetry conditions are investigated. It is shown that two widely used classes of spin functions, namely, the spin-bonded functions and Yamanouchi-Kotani (or, equivalently, Gelfand-Tsetlin) functions possess these properties. The relationship of the latter with Young-Yamanouchi spin functions is also outlined using graphical techniques of spin algebras. These techniques are also used to rederive the Hamiltonian matrix elements between spin-bonded functions and to show the relationship among the various schemes used in this case.
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  • 59
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    International Journal of Quantum Chemistry 15 (1979), S. 481-489 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The paper reports the study of a possible mechanism of Ca+2 activation of prostaglandin PGF2α on the basis of molecular-orbital and conformation-energy calculations. The electronic charges on various atoms of the molecule have been evaluated from the available crystallographic data by the extended Hückel theory (EHT). Conformation energies were calculated for intrinsic torsional rotations around the C11—C12, C7—C8, and C14—C15 bonds. The minimum energy conformation was found to differ from the crystallographic conformation by 9.3 kcal/mol. Some additional local energy minima are also reported within this range. The calculation of the long-range interchain interaction energy between the α and ω chains shows variation with conformation. The binding site for the Ca+2 ion has been estimated on the basis of the molecular electrostatic potentials. Such a binding site was found near the carboxyl group, which agrees with the current chemical thinking. Changes in the electronic charge distribution due to Ca+2 complexation were studied by EHT method using the supramolecular approach. Calcium complexation decreases the conformation energy by 2-3 kcal/mol and has a small effect on the interchain interaction energy.
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  • 60
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    International Journal of Quantum Chemistry 15 (1979), S. 491-497 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Several analogs of valinomycin have been simulated. These are analogs obtained by changing the configuration of the amino acid and hydroxy acid residues one at a time. Nonbonded interactions have been calculated for three conformations of each analog. The electrostatic and polarization contributions to the energy are conformation selective, whereas the Pauli repulsion is the only component which is isomer selective. For the ring chirality considered here the analog of valinomycin having all the three L-valyl residues replaced by D-valyl residues is predicted to be frozen in a “top open” conformation.
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  • 61
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    International Journal of Quantum Chemistry 15 (1979), S. 499-510 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The ab initio SCF LCAO-MO method is used to compute the main electronic properties of a purine nucleoside, adenosine, in two specific conformational arrangements (3′-endo conformation of the ribose, gt orientation of the extracyclic CH2OH group, anti orientation of the base with respect to the sugar and 3′-endo conformation of the ribose, gg orientation of the extra-cyclic CH2OH group, syn orientation of the base with respect to the sugar). The results are compared with those performed for the isolated component fragments, adenine and 3′-endo riboses.
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  • 62
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    International Journal of Quantum Chemistry 18 (1980), S. 1109-1131 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A theorem is presented that characterizes approximate states and truncated operator manifolds associated with self-consistent approximate propagators. This theorem establishes a natural relationship between Hermiticity, stationarity, nonredundance and completeness of operator manifolds, model time evolution, and the vacuum condition. For the case of the polarization propagator we describe algorithms by which we can construct states and manifolds that satisfy this theorem and the vacuum condition.
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  • 63
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    International Journal of Quantum Chemistry 18 (1980), S. 1165-1173 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An exchange-correlation potential model to be used in connection with the multiple scattering method is presented. Retaining the main advantages of the multiple scattering method with the Xα potential, particularly its low computational requirements, this new formalism does not require any adjustable parameter. Test calculations on the NiF64- system are reported and compared with experimental and ab initio results.
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  • 64
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    International Journal of Quantum Chemistry 15 (1979) 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
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  • 65
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    International Journal of Quantum Chemistry 15 (1979), S. 547-557 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The cyanide-isocyanide isomerization has been studied with ab initio calculations in an STO-3G basis as applied to NCNCO, NCCNO, NCOCN, and NCONC, and the corresponding isocyanides. Geometry optimization has been performed on these cyanides, their isocyanides, and their hypothetical transition states. The energies of isomerization were calculated to be 42.2, 29.8, 44.6, and 41.4 kcal/mol, respectively, while the energy barriers were found as 84.3, 67.5, 107.9, and 106.8 kcal/mol. Overlap populations and atomic charges were employed to provide simple correlations of the results.
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    Topics: Chemistry and Pharmacology
    Notes: Configuration-interaction calculations, with an extended basis, are carried out on the ground and lower excited states of O2 and O2+ at and near the equilibrium internuclear distance (R = 2.3 a.u.) of the ground state of O2. Particular attention has been paid to the two lowest 3Σu- states, and the mixing of the valence and Rydberg characters in these states are studied. The lowest 3Σu- state is a Rydberg-type state for R 〈 2.3 a.u., but becomes valence-type for R ≳ 2.3 a.u. The second 3Σu- state, which is 1.6 eV above the lowest 3Σu- at R = 2.3 a.u., changes its character from Rydberg to valence, valence to Rydberg, and then to valence again when R increases from 1.9 to 3.1 a.u. Satisfactory agreement between the calculated and experimental vertical excitation energies is obtained.
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  • 67
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    International Journal of Quantum Chemistry 15 (1979), S. 559-566 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new form of pseudopotential for applicaiton in ab initio molecular calculations is described. A method for determining pseudopotential parameters is suggested and pseudopotential parameters of double-zeta quality are presented for the first row atoms of the periodic table. The pseudopotential is especially well suited for incorporation into the floating-spherical-Gaussian-orbital (FSGO) method, though it is not restricted to any particular method. Applications of the resulting pseudo-FSGO method to BeH2, BH3, CH4, and C2H6 are presented.
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    International Journal of Quantum Chemistry 15 (1979), S. 567-578 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Pseudopotential theory is introduced into the ab initio FSGO molecular fragment method. A theoretical background for the pseudopotential fragment description and a method for large molecule formation is presented. Core-valence electron separation is achieved at both levels of the calculations with the resulting simplification of the molecular calculations. Using pseudopotentials of double-zeta quality a detailed description of pseudopotential molecular fragments CH4 (tetrahedral) and CH3 (planar) is presented. Applications of the pseudo-FSGO molecular fragment method to hydrocaroons are discussed. The results are compared to those of the original FSGO method and experiment.
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  • 69
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    International Journal of Quantum Chemistry 15 (1979), S. 579-588 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A procedure is outlined for a programmable spin-free configuration-interaction (CI) study in molecules using single-parameter alternant molecular orbitals for generating various configurations. The configurations were chosen to form bases for the irreducible representation {2N/2-2, 12S} of the general linear group GL(n). Using a transformation to biorthogonal space the CI matrix elements of a spin-free Hamiltonian were generated. The procedure has been used to obtain the π-electron energies for the 3,1Ag and 3,1Bu states of cis- and trans-butadiene.
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    International Journal of Quantum Chemistry 18 (1980), S. 1405-1413 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Semiempirical MO calculations of the self-consistent charge and configuration (SCCC) method are reported for the acetonitrile-metal solvated species (CH3CN)xMn+, where M = Be2+ and Mg2+. Comparison of the delocalization energies for various chemical structures x = 1, 2, 3, 4, 6 leads to an expectation of a tetrahedral structure for the Be2+ species and an octahedral structure for the Mg2+ species. The electronic nature of the donor-acceptor interaction is also discussed.
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    International Journal of Quantum Chemistry 18 (1980), S. 1465-1472 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Analytical formulas are given for the orbital contributions to two-electron properties such as 〈r12n〉, with n = -2, -1, 1, 2, 3, and 4, for atomic systems in which orbitals are expanded as linear combinations of Gaussian functions. Numerical values for all possible contributions in the atoms Li to Ne have been calculated at the Hartree-Fock level. These quantities are compared and discussed to show what kind of information can be obtained from such quantities. The influence of the basis set size has also been considered.
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    International Journal of Quantum Chemistry 18 (1980), S. 1485-1487 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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    International Journal of Quantum Chemistry 18 (1980), S. 709-713 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Using a modified form of Sharma's method for the expansion of a Slater-type orbital in spherical harmonics about a displaced center, a general expression for the overlap integral between two orbitals is derived that is equivalent to that given by Sharma. By use of a simple kind of “computer algebra” this expression is developed here into a formula that is equivalent to earlier known ones and may have computational advantages when the generated formula coefficients are stored. This method is capable of extension to more complicated integrals.
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    International Journal of Quantum Chemistry 15 (1979), S. 713-715 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The Longuet-Higgins group is used to obtain an alternative formulation of a criterion for optical activity of nonrigid molecules recently given by Frei and Günthard.
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    International Journal of Quantum Chemistry 18 (1980), S. 891-904 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This paper reports some theoretical studies of PGA1 using conformational and molecular orbital techniques. The conformation energy (CE) calculations, using empirical potential-energy functions, for intrinsic torsional rotations around C12—C13 (θ), C7—C8 (Ψ), and C14—C15 (φ) show a number of energy minima. The relative value of the CE for these minima ranges from 4.09 to 8.01 kcal/mol. An additional rotation around C4—C5 (χ) giving “twist” to the carboxyl chains lowers the CE value by 2-3 kcal/mol and a conformation with CE value 2.39 kcal/mol less than crystallographic one is obtained. The interchain interaction energy showed changes with conformations. No significant change in the interchain interaction energy was observed due to “twist” in the carboxyl chain. The isopotential mapping study demonstrated the probable ionic binding site near the carboxyl and the ring (O9) oxygens. Conformational and molecular orbital results are discussed in the light of the reduced abortifacient potency of PGA1 with respect to PGF2α and the possible role of Ca2+ ions in this action.
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    International Journal of Quantum Chemistry 18 (1980), S. 1157-1163 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The transformation of two-electron integrals from an atomic orbital basis to a symmetry orbital basis is a straightforward procedure, but becomes a time-consuming process when the system has high symmetry. In the conventional transformation algorithm, the number of multiplications is proportional to the fifth power of the basis size. To reduce the computer time, a new transformation algorithm is proposed. In this method, the number of multiplications for the transformation is proportional to the fourth power of the number of atomic orbitals in an equivalent orbital group. A new transformation program has been completed and tested against the conventional n5 method. The present method may be regarded as extension of Almlöf's method to any molecular point group. The program cuts the CPU time for the transformation to one-third in calculations for C4H8 and NiF6. This reduction is quite significant for large systems having high symmetry.
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    International Journal of Quantum Chemistry 16 (1979), S. 5-17 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The properties of exciton and soliton excitations in one-dimensional molecular systems and in α-helical protein molecules are investigated. It is shown that collective excitations - solitons, corresponding to a combination of vibrational excitations in peptide groups and a local deformation of molecules - are possible in α-helical protein molecules. These excitations move along the molecule without energy losses and are perfect energy carriers. A qualitative description of the shortening in the length of muscular fibers is given using the concept of solitons occurring under the hydrolysis of ATP molecules at the ends of thick fibers contained in the sarcomeres of muscular fibers.
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    International Journal of Quantum Chemistry 16 (1979), S. 31-42 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new electron structural mechanism is proposed for interpretations in molecular biology, in addition to the already existing theories of Szent-Györgyi (semiconductivity) and Fröhlich (long-range coherence). The hypothetical “intermediate-” or “zigzag states” (ZZS) of solids are investigated by the recursion (transfer matrix) method. The physical reality of the ZZS is discussed up to an SCF DODS-type theory and the necessity of additional less approximate investigations is emphasized. The possible role of ZZS in the explanation of: (i) translation in protein synthesis, (ii) energy and charge transfer processes, as well as (iii) initiation of protein formation is outlined.
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    International Journal of Quantum Chemistry 16 (1979), S. 19-29 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Preferred conformations of phospholipids have been predicted through quantum-chemical techniques and classical potential functions. An essential condition for a conformation to exist in a biomembrane is that it should be possible for it to organize in the form of a bilayer. Taking into consideration the conformational flexibility of the polar head group, organization at the lipid-water interface has been considered. The biological implications of such an organization in terms of formation of “hydrophobic channels” is discussed. Quantum-mechanical investigations on the transport phenomenon have shown that the “selectivity” of biological membranes is connected with the “organization.” Calculations of the quantum-mechanical transmission coefficients for different model potential profiles indicate that minor differences in the height of potential barriers in certain regions can lead to significant changes in transmission coefficients. The “directional selectivity” of substrates (differences in transmission coefficients for flow in and out of the cell) can be explained on the basis of differences in membrane organization. These results have some important consequences in the evolutionary process in biological membranes.
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    International Journal of Quantum Chemistry 16 (1979), S. 43-50 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In the myosin-auramine O system 10 or 11 binding sites of auramine O on the rod-like part of myosin were discovered. The myosin fluorescence decreases with an increase in auramine O concentration. This is evidence of the excitation energy transfer from tryptophanyls situated near the binding sites to auramine O. The effective distance of energy transfer is 35 Å. It is suggested that the light meromyosin has binding sites with periodicities of 77-86 Å. Every binding site has a negative charge and hydrophobic locus.
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    International Journal of Quantum Chemistry 16 (1979), S. 51-56 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The transition from quantum chemistry to quantum biology is discussed, and the contributions that quantum biology can make to the study of biological structure and process are outlined. The need for extensions to the theory to deal with larger systems, to include solvent effects and to account for specificity, are emphasized.
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    International Journal of Quantum Chemistry 16 (1979), S. 57-64 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Pseudopotential theory is introduced into the ab initio FSGO molecular fragment method. Pseudopotential molecular fragments using pseudopotentials of double-zeta quality are characterized, and a method of their assembly into larger molecules is presented. Core-valence electron separation is achieved at both levels of the molecular calculations. Heteroatom incorporation into the method is also considered. Applications of the pseudo-FSGO molecular fragment method to hydrocarbons and simple molecular systems containing heteroatoms are discussed. Results are compared to those of the original FSGO method and experiment.
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    International Journal of Quantum Chemistry 16 (1979), S. 65-70 
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    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Pair energies contributing to the correlation energies of the outer-shell electrons (n = 3) as well as for the 1s2 and 2s2 pairs are computed for the Zn2+ closed-shell ion by means of the variational-perturbation method starting with the sum of one-electron Hartree-Fock operators as the zeroth-order Hamiltonian. The results allow an understanding of the electron correlation for pairs of electrons of the p and d type. For 3p3d pairs it has been found that the correlation energy for the singlet pair of 1D symmetry is lower than for the triplet pair 3D. The 3l-3l′ correlation energies are compared with the MBPT results of Kelly and Ron for Fe. The total correlation energy of the outer shell is -1.032 a. u.
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    International Journal of Quantum Chemistry 16 (1979), S. 71-77 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The intermolecular electronic correlation contributions to the Coulomb component of the nucleic acid base interaction energy are estimated. The Coulomb energy is evaluated with the use of atomic monopoles, which are determined from the π-electronic densities calculated by the SCF method and by employing partially or completely optimized APSG wave functions. When the correlation is thus taken into account, a systematic decrease in atomic charges occurs; this effect is considerable only if an optimized orbital set is used. As a result, the Coulomb interaction energy due to the π-electronic atoms decreases from -1.13 to -0.85 kcal/mol for the AT pair and from -7.15 to -4.61 kcal/mol for the GC pair.
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  • 85
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    International Journal of Quantum Chemistry 16 (1979), S. 79-86 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A method is described for processing the enthalpy, entropy, and Gibbs free energy terms of formation of the individual isomers of n-particle clusters obtained by means of quantum-chemical calculations, to enable a comparison of these partial theoretical characteristics with the overall experimental ones. The general scheme of weighting treatment is illustrated by examples based on recent quantum-chemical results of studies of isomeric forms of (NO)2, (H2O)5 and (D2O)5, and CH3OH · 3H2O and CH3OH · 6H2O clusters.
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  • 86
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    International Journal of Quantum Chemistry 16 (1979), S. 87-110 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The electronic structure of a series of 25 chlorinated dibenzo-p-dioxins and dibenzofurans has been characterized by means of the ab initio molecular fragment technique. This information has been employed to investigate some of the factors affecting the affinity of the molecules for the hepatic cytosol binding species described by Poland, Glover, and Kende. A quantitative structure-activity relationship involving electronic and steric parameters could be established from the data. It appears that the toxins act as electron acceptors in a charge-transfer complex with the receptor.
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  • 87
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    International Journal of Quantum Chemistry 16 (1979), S. 111-117 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The circular dichroism of molecules, which are large compared to the wavelength of light, is considered. Explicit expressions are obtained for the circular dichroism and absorption of an exciton dimer and of a free particle on a helix. The dimensions are described for which the dipole approximation for the optical properties fails.
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  • 88
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    International Journal of Quantum Chemistry 16 (1979), S. 133-152 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The analysis of modern physical mechanisms of electron transfer in proteins is given. The tunnel electron transfer and donor-acceptor electron transfer through conducting states of a protein chain are discussed in detail. The expressions for the values of the electron resonance interaction and the formulas for probabilities of electron transfer between vibronic levels of donor and acceptor states in the presence of “transverse” and “longitudinal” relaxation are given.
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  • 89
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    International Journal of Quantum Chemistry 16 (1979), S. 119-132 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The expressions for the polymer absorption band hypochromism and oscillator strength are studied in frames of the first-order perturbation theory. The physically justified approximations for a polymer hypochromism calculation are indicated. The uniform interpretation of the effect origin is given independently on the approximation used. In frames of the perturbation theory the DNA hypochromism formula is obtained, from which the known experimental dependences of hypochromism on chain length and polymer helicity degree follows directly. The analytic expression of the DNA hypochromism dependence on AT pairs content is obtained. It is established that in most cases for natural DNA the nucleotide sequence does not influence in practice the value of the hypochromic effect.
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  • 90
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    International Journal of Quantum Chemistry 16 (1979), S. 153-157 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The intramolecular interaction energy of the regular double-helical polynucleotide as a function of variables that determine the mutual position of base pairs and sugar pucker was calculated using atom-atom potentials. The calculations showed the existence of two valley-like regions with minimal values on the energetic surface. One of them corresponds to the A family of nucleic acids, the other to the B family. The points that correspond to the models constructed by means of x-ray data are placed in a conformational space near the lines that describe the position of the bottom of the valleys.
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  • 91
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    International Journal of Quantum Chemistry 16 (1979) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 92
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    International Journal of Quantum Chemistry 16 (1979), S. 847-855 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The investigation of the factors determining the formation and stability of the higher biopolymers structures is one of the most important trends of the development of molecular biophysics. A feature common to most macromolecular systems under physiological conditions is that they function in an aqueous environment. Thus, it is natural to assume that the peculiarities of biological macromolecules structures and their functional activity as well are closely related to the specific properties of such a unique solvent as water. The investigations of the conformational changes of biopolymer, induced by dehydration of the macromolecule, give information about the nature of the forces stabilizing its structure. The dehydration of the macromolecule in solution can be attained by addition of a nonaqueous cosolvent. Generally low-molecular-weight aliphatic alcohols, amides, and amines are used as a nonaqueous component. At present a vast number of experimental and theoretical data concerning the properties of water and aqueous systems are available. The specificity of water as a solvent arises primarily from the spatial hydrogen-bonded structure. The addition of a nonaqueous component exerts changes in this structure, which evolve to the singularities of the physical characteristics of water-nonelectrolyte mixtures. It is generally assumed that nonelectrolytes may be divided, according to their effect on the spatial water structure, largely into two basic classes: (1) the structure makers, i.e., the compounds of aliphatic alcohols type; (2) the structure breakers, i.e., the compounds of urea type. The agents belonging to the first class show a stabilizing effect in the range of low nonelectrolyte content. At a certain critical concentration, Ccrit, characteristic of each substance, the nonaqueous solute molecules leave the cavities of the spatial water structure which leads to a disruption of the latter. The agents belonging to the second class exert a structure-breaking effect even in the range of extremely low concentrations, which arises from their high competitive ability for hydrogen bonding.
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  • 93
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    International Journal of Quantum Chemistry 16 (1979), S. 877-882 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The physical aspects of the primary charge separation processes in bacterial photosynthesis are discussed. The donor-acceptor model of electron transfer due to participation of protein current states is used. The kinetics of photosynthetic reaction center (PRC) processes is investigated and the PRC energetic scheme is constructed using the nonequilibrium density matrix method. It is shown that with allowance for the effect of vibrational sublevels of states participating in transitions the theory describes well experimental data.
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  • 94
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This paper analyzes the low-temperature magnetic circular dichroism of NO-Fe(II)hemoproteins in detail. We include the Jahn-Teller effect in our consideration of the low-temperature MCD results.
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  • 95
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    International Journal of Quantum Chemistry 16 (1979), S. 891-895 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The unrestricted HF method in the INDO approximation with optimized geometry was used to describe the electronic structure of the hetero-ring of verdazyl and the derivatives of the latter. The results obtained are in good agreement with the experimental EPR spectra of triphenylverdazyl radical and its dipole moment. These data may be a basis for understanding and predicting the chemical properties and reactivity of verdazyl and its derivatives.
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  • 96
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    International Journal of Quantum Chemistry 16 (1979) 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 97
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Double-helical polynucleotide conformations, poly(dA)·poly(dT), poly(d(A-T))·poly(d(T-A))·poly(dG)·poly(dC), and poly(d(G-C))·poly(d(C-G)) are analyzed by the atom-atom potential method. The energy optimization is carried out in the space of eight independent geometric parameters using analytical procedures for the constraints, taking into account the flexibility of the β-D-deoxyribose rings. At the first stage, the full screening of atomic partial charges was assumed. The structures of the calculated B and the A forms of DNA are characterized by low energy and absence of short contacts; the dihedral angles are near the average values in the monomers. With the typical energy difference of 3-5 kcal/mol nucleotide pairs in all cases, the B form is more preferable as compared to the A form. At the final step the effect of the Coulomb term is evaluated for poly(dA)·poly(dT) using various values of the effective dielectric constant (ε = 28, 24, 20, 18, 14, 12, 10, 8, 6, 4, and 1). If ε ≤24, the energy optimization leads A to B. We discuss the stereochemical details of the intermediate conformations on the A-B path and hypothesize the nature of stability of the A and the B forms and the mechanism of the A-B transition.
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  • 98
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    International Journal of Quantum Chemistry 17 (1980), S. 377-398 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The energy of (H2O)3 has been calculated for 29 geometrical configurations of the trimer using the SCF LCAO MO method and extended as well as minimal basis sets of Gaussian functions. For two configurations two intermediate basis sets have also been tested. The results show the nonadditive component of the interaction energy to be small. They also indicate that fairly reliable results for the trimer can be obtained using minimal basis sets and the counterpoise method to eliminate the basis set superposition error. The nonadditive contribution to the interaction energy is shown to be mainly due to the long-range induction interaction.
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  • 99
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    International Journal of Quantum Chemistry 17 (1980), S. 459-465 
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present two identities that permit a simplification of some lengthy derivations with spherical harmonics. Examples of their use are given.
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  • 100
    ISSN: 0020-7608
    Keywords: Computational Chemistry and Molecular Modeling ; Atomic, Molecular and Optical Physics
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The practical value of a wave function derives from its ability to estimate or predict the chemical and physical properties of the electronic structure which it describes. Reliability is defined as a property to be evaluated on the basis of (i) the magnitude of the difference between the measured and calculated values of the observable together with (ii) the sign of the difference, (ii) the number and nature of observables correctly estimated, and (iv) the number and type of electronic structures that are correctly estimated. Systematic statistical comparison implies the existence of both internally consistent sets of wave functions for homologous series of molecules and their corresponding experimental values together with reliable error estimates. The most complete data base currently available for comparison is the spectroscopic constants for the first and second row diatomic hydrides. Utilizing appropriate statistical comparison techniques, four approximations (CEPA, PNO-CI, GTO-SCF, and STO-SCF) are compared among themselves and against experimentally measured values. The CEPA approximation yields differences from experiment that approximate a normal error distribution, while the other approximations show systematic departures from experiment. Two values, ωe and ωeχe, for SH exhibit differences large enough to cast doubt upon the calculated value, the experimental value, or both.
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