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  • Other Sources  (55)
  • American Association for the Advancement of Science (AAAS)
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  • 1
    Publication Date: 2019-01-21
    Description: As ecosystem engineers, seagrasses are angiosperms of paramount ecological importance in shallow shoreline habitats around the globe. Furthermore, the ancestors of independent seagrass lineages have secondarily returned into the sea in separate, independent evolutionary events. Thus, understanding the molecular adaptation of this clade not only makes significant contributions to the field of ecology, but also to principles of parallel evolution as well. With the use of Dr. Zompo, the first interactive seagrass sequence database presented here, new insights into the molecular adaptation of marine environments can be inferred. The database is based on a total of 14 597 ESTs obtained from two seagrass species, Zostera marina and Posidonia oceanica, which have been processed, assembled and comprehensively annotated. Dr. Zompo provides experimentalists with a broad foundation to build experiments and consider challenges associated with the investigation of this class of non-domesticated monocotyledon systems. Our database, based on the Ruby on Rails framework, is rich in features including the retrieval of experimentally determined heat-responsive transcripts, mining for molecular markers (SSRs and SNPs), and weighted key word searches that allow access to annotation gathered on several levels including Pfam domains, GeneOntology and KEGG pathways. Well established plant genome sites such as The Arabidopsis Information Resource (TAIR) and the Rice Genome Annotation Project are interfaced by Dr. Zompo. With this project, we have initialized a valuable resource for plant biologists in general and the seagrass community in particular. The database is expected to grow together with more data to come in the near future, particularly with the recent initiation of the Zostera genome sequencing project. The Dr. Zompo database is available at http://drzompo.uni-muenster.de/
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  • 2
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 325 (5944). pp. 1114-1118.
    Publication Date: 2017-10-24
    Description: One of the mysteries regarding Earth’s climate system response to variations in solar output is how the relatively small fluctuations of the 11-year solar cycle can produce the magnitude of the observed climate signals in the tropical Pacific associated with such solar variability. Two mechanisms, the top-down stratospheric response of ozone to fluctuations of shortwave solar forcing and the bottom-up coupled ocean-atmosphere surface response, are included in versions of three global climate models, with either mechanism acting alone or both acting together. We show that the two mechanisms act together to enhance the climatological off-equatorial tropical precipitation maxima in the Pacific, lower the eastern equatorial Pacific sea surface temperatures during peaks in the 11-year solar cycle, and reduce low-latitude clouds to amplify the solar forcing at the surface.
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  • 3
    Publication Date: 2019-08-08
    Description: The taxonomy of two sympatric surf clams Donax marincovichi Coan, 1983 and Donax obesulus Reeve, 1854, inhabiting the coastal Humboldt Current Upwelling System is revisited. Because both species are exploited by artisanal fisheries, it is essential to verify that they are indeed distinct species that have to be managed separately. In this study, both taxa were sampled across their shared distributional area and specimens were indentified according to their respective morphological characteristics. Although width/height and height/length ratios revealed significant differences within sampling areas, the two morphotypes were frequently incongruent for taxonomically important morphometric parameters. In addition, they showed no significant mitochondrial genetic differentiation within or among populations and exhibited indistinguishable sperm ultrastructure. We conclude that the two morphotypes do not represent distinct species and should be included together under D. obesulus.
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  • 4
    Publication Date: 2019-09-23
    Description: The oceans are a major sink for atmospheric carbon dioxide (CO2). Historically, observations have been too sparse to allow accurate tracking of changes in rates of CO2 uptake over ocean basins, so little is known about how these vary. Here, we show observations indicating substantial variability in the CO2 uptake by the North Atlantic on time scales of a few years. Further, we use measurements from a coordinated network of instrumented commercial ships to define the annual flux into the North Atlantic, for the year 2005, to a precision of about 10%. This approach offers the prospect of accurately monitoring the changing ocean CO2 sink for those ocean basins that are well covered by shipping routes.
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  • 5
    Publication Date: 2019-09-23
    Description: Picoeukaryotes are a taxonomically diverse group of organism less than 2 micrometers in diameter. Photosynthetic marine picoeukaryotes in the genus Micromonas thrive in ecosystems ranging from tropical to polar and could serve as sentinel organisms for biogeochemical fluxes of modern oceans during climate change. These broadly distributed primary producers belong to an anciently diverged sister clade to land plants. Although Micromonas isolates have high 18S ribosomal RNA gene identity, we found that genomes from two isolates shared only 90 of their predicted genes. Their independent evolutionary paths were emphasized by distinct riboswitch arrangements as well as the discovery of intronic repeat elements in one isolate, and in metagenomic data, but not in other genomes. Divergence appears to have been facilitated by selection and acquisition processes that actively shape the repertoire of genes that are mutually exclusive between the two isolates differently than the core genes. Analyses of the Micromonas genomes offer valuable insights into ecological differentiation and the dynamic nature of early plant evolution.
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  • 6
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 323 (5912). pp. 343-344.
    Publication Date: 2021-08-20
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  • 7
    Publication Date: 2019-09-23
    Description: The diversity of Cyanobacteria in water and sediment samples from four representative sites of the Salar de Huasco was examined using denaturing gradient gel electrophoresis and analysis of clone libraries of 16S rRNA gene PCR products. Salar de Huasco is a high altitude (3800 m altitude) saline wetland located in the Chilean Altiplano. We analyzed samples from a tributary stream (H0) and three shallow lagoons (H1, H4, H6) that contrasted in their physicochemical conditions and associated biota. Seventy-eight phylotypes were identified in a total of 268 clonal sequences deriving from seven clone libraries of water and sediment samples. Oscillatoriales were frequently found in water samples from sites H0, H1 and H4 and in sediment samples from sites H1 and H4. Pleurocapsales were found only at site H0, while Chroococcales were recovered from sediment samples of sites H0 and H1, and from water samples of site H1. Nostocales were found in sediment samples from sites H1 and H4, and water samples from site H1 and were largely represented by sequences highly similar to Nodularia spumigena. We suggest that cyanobacterial communities from Salar de Huasco are unique - they include sequences related to others previously described from the Antarctic, along with others from diverse, but less extreme environments.
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  • 8
    Publication Date: 2019-09-23
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  • 9
    Publication Date: 2019-09-24
    Description: The functional gene amoA was used to compare the diversity of ammonia-oxidizing bacteria (AOB) in the water column and sediment-water interface of the two freshwater lakes Plusssee and Schöhsee and the Baltic Sea. Nested amplifications were used to increase the sensitivity of amoA detection, and to amplify a 789-bp fragment from which clone libraries were prepared. The larger part of the sequences was only distantly related to any of the cultured AOB and is considered to represent new clusters of AOB within the Nitrosomonas/Nitrosospira group. Almost all sequences from the water column of the Baltic Sea and from 1-m depth of Schöhsee were related to different Nitrosospira clusters 0 and 2, respectively. The majority of sequences from Plusssee and Schöhsee were associated with sequences from Chesapeake Bay, from a previous study of Plusssee and from rice roots in Nitrosospira-like cluster A, which lacks sequences from Baltic Sea. Two groups of sequences from Baltic Sea sediment were related to clonal sequences from other brackish/marine habitats in the purely environmental Nitrosospira-like cluster B and the Nitrosomonas-like cluster. This confirms previous results from 16S rRNA gene libraries that indicated the existence of hitherto uncultivated AOB in lake and Baltic Sea samples, and showed a differential distribution of AOB along the water column and sediment of these environments
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  • 10
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 320 . pp. 655-658.
    Publication Date: 2019-09-24
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  • 11
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    Oxford University Press
    In:  FEMS Microbiology Ecology, 64 . pp. 65-77.
    Publication Date: 2019-09-23
    Description: Bacterial communities associated with the brown alga Laminaria saccharina from the Baltic Sea and from the North Sea were investigated using denaturing gradient gel electrophoresis and 16S rRNA gene clone libraries. The rhizoid, cauloid, meristem and phyloid revealed different 16S rRNA gene denaturing gradient gel electrophoresis banding patterns indicating a specific association of bacterial communities with different parts of the alga. Associations with cauloid and meristem were more specific, while less specific associations were obtained from the old phyloid. In addition, seasonal and geographical differences in the associated communities were observed. Results from 16S rRNA gene libraries supported these findings. Bacterial phylotypes associated with the alga were affiliated with the Alphaproteobacteria (nine phylotypes), Gammaproteobacteria (nine phylotypes) and the Bacteroidetes group (four phylotypes). A number of bacteria associated with other algae and other marine macroorganisms were among the closest relatives of phylotypes associated with L. saccharina.
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  • 12
    Publication Date: 2016-09-08
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  • 13
    Publication Date: 2019-09-23
    Description: Over recent years, several PCR primers have been described to amplify genes encoding the structural subunits of ammonia monooxygenase (AMO) from ammonia-oxidizing bacteria (AOB). Most of them target amoA, while amoB and amoC have been neglected so far. This study compared the nucleotide sequence of 33 primers that have been used to amplify different regions of the amoCAB operon with alignments of all available sequences in public databases. The advantages and disadvantages of these primers are discussed based on the original description and the spectrum of matching sequences obtained. Additionally, new primers to amplify the almost complete amoCAB operon of AOB belonging to Betaproteobacteria (betaproteobacterial AOB), a primer pair for DGGE analysis of amoA and specific primers for gammaproteobacterial AOB, are also described. The specificity of these new primers was also evaluated using the databases of the sequences created during this study.
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  • 14
    Publication Date: 2019-09-24
    Description: We studied the effect of the quorum-sensing (QS) blockers 5-hydroxy-3[(1R)-1-hydroxypropyl]-4-methylfuran-2(5H)-one (FUR1), (5R)-3,4-dihydroxy-5-[(1S)-1,2-dihydroxyethyl]furan-2(5H)-one (FUR2) and triclosan (TRI) on the formation of bacterial biofilms, and the effect of these biofilms on the larval attachment of the polychaete Hydroides elegans and the bryozoan Bugula neritina. 14-day-old subtidal biofilms were harvested from artificial substrata and were allowed to develop in the laboratory with and without QS blockers. QS blockers inhibited the production of violacein by the QS reporter strain Chromobacterium violaceum CV026 and did not affect the metabolic activity of bacteria in multispecies biofilms. At a concentration of 10(-3) M all three tested compounds inhibited the establishment of microbial communities, but at one of 10(-4) M only FUR2 inhibited establishment. The tested QS blockers caused changes in bacterial density and bacterial community structure, as revealed by terminal restriction fragment length polymorphism and FISH. The groups most affected by QS blockers were Alphaproteobacteria, Gammaproteobacteria and the Cytophagales. Larvae of H. elegans and B. neritina avoided settling on biofilms that had developed in the presence of QS blockers. Our results suggest that QS blockers directly control the formation of multi-species biofilms, and indirectly - by means of biofilm properties - affect larval attachment on these modified biofilms.
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  • 15
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 316 (5833). pp. 1854-1855.
    Publication Date: 2020-10-21
    Description: Sponges (phylum Porifera) are among the most ancient of the multicellular animals, or Metazoa, with a fossil record dating back at least 580 million years (1). Found both in marine and freshwater environments, they filter-feed by pumping water through their bodies, which can contain a remarkable number of microbial symbionts. Sponges lack many of the characteristics typical of animals, but recent genomic studies—including the report by Jackson et al. on page 1893 of this issue (2)—have shown that they possess many major metazoan gene families. Sponges are thus invaluable systems for studying the evolution of metazoans and their interactions with microorganisms. Furthermore, their highly stable skeletons are of interest to materials scientists. Biomineralization is an important feature of metazoan life. Animals including vertebrates, insects, mollusks, and sponges use minerals [such as calcium carbonate, iron, and silica] to form skeletal structures such as bones, seashells, and coral reefs (3). Biocalcification arose among many metazoan lineages during the “Cambrian explosion,” between 530 and 520 million years ago, when the ancestors of today's animals first appeared in the fossil record. Did these lineages share the same gene(s) for biocalcification, or did multiple independent evolutionary events give rise to the ability to biocalcify? Recent studies, including that by Jackson et al., are beginning to provide an answer to this question. Jackson et al. use the Indo- Pacific sponge Astrosclera willeyana to show that the last common ancestor of the metazoans possessed a precursor to the α-carbonic anhydrases. This gene family is used by animals today in a range of processes including ion transport, pH regulation, and biomineralization (4). By integrating molecular techniques ranging from protein sequencing to gene expression, the authors identified a group of closely related α-carbonic anhydrase sequences in A. willeyana. These sequences are similar to those recovered from a whole-genome project on another sponge, Amphimedon queenslandica (5). Together, the sponge α-carbonic anhydrases form a sister group to those of all other metazoans.
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  • 16
    Publication Date: 2016-09-08
    Description: The Atlantic meridional overturning circulation (MOC), which provides one-quarter of the global meridional heat transport, is composed of a number of separate flow components. How changes in the strength of each of those components may affect that of the others has been unclear because of a lack of adequate data. We continuously observed the MOC at 26.5°N for 1 year using end-point measurements of density, bottom pressure, and ocean currents; cable measurements across the Straits of Florida; and wind stress. The different transport components largely compensate for each other, thus confirming the validity of our monitoring approach. The MOC varied over the period of observation by ±5.7 × 106 cubic meters per second, with density-inferred and wind-driven transports contributing equally to it. We find evidence for depth-independent compensation for the wind-driven surface flow.
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  • 17
    Publication Date: 2014-01-09
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  • 18
    Publication Date: 2016-09-08
    Description: The vigor of Atlantic meridional overturning circulation (MOC) is thought to be vulnerable to global warming, but its short-term temporal variability is unknown so changes inferred from sparse observations on the decadal time scale of recent climate change are uncertain. We combine continuous measurements of the MOC (beginning in 2004) using the purposefully designed transatlantic Rapid Climate Change array of moored instruments deployed along 26.5°N, with time series of Gulf Stream transport and surface-layer Ekman transport to quantify its intra-annual variability. The year-long average overturning is 18.7 ± 5.6 sverdrups (Sv) (range: 4.0 to 34.9 Sv, where 1 Sv = a flow of ocean water of 106 cubic meters per second).
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  • 19
    Publication Date: 2020-07-31
    Description: Microbial isolate Z143-1 found to be associated with an unidentified tunicate was characterized due to its significant antimicrobial activity. Z143-1 is similar to Pseudovibrio ascidiaceicola and Pseudovibrio denitrificans in morphological, physiological and biochemical characteristics, except for its ability to ferment glucose and produce a characteristic red pigment. Fatty acid methyl ester analysis revealed a predominance of the fatty acid 18:1 ω7c at 80.55%, at levels slightly lower than the Pseudovibrio denitrificans type strain DN34T (87.7%). The mol% G+C of Z143-1 is 54.02, relatively higher than the Pseudovibrio denitrificans type strain DN34T and Pseudovibrio ascidiaceicola with mol% G+C of 51.7 and 51.4, respectively. However, phylogenetic analysis of the 16S rRNA gene sequence of Z143-1 showed 100% similarity with the Pseudovibrio denitrificans type strain DN34T. In this study, the bacterium Z143-1 is reported as a new strain of Pseudovibrio denitrificans. While there is no report of a secondary metabolite for Pseudovibrio denitrificans, Z143-1 produces the red pigment heptylprodigiosin, also known as 16-methyl-15-heptyl-prodiginine, which shows anti-Staphylococcus aureus activity.
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  • 20
    Publication Date: 2019-03-06
    Description: Atmospheric carbon dioxide concentration is expected to exceed 500 parts per million and global temperatures to rise by at least 2°C by 2050 to 2100, values that significantly exceed those of at least the past 420,000 years during which most extant marine organisms evolved. Under conditions expected in the 21st century, global warming and ocean acidification will compromise carbonate accretion, with corals becoming increasingly rare on reef systems. The result will be less diverse reef communities and carbonate reef structures that fail to be maintained. Climate change also exacerbates local stresses from declining water quality and overexploitation of key species, driving reefs increasingly toward the tipping point for functional collapse. This review presents future scenarios for coral reefs that predict increasingly serious consequences for reef-associated fisheries, tourism, coastal protection, and people. As the International Year of the Reef 2008 begins, scaled-up management intervention and decisive action on global emissions are required if the loss of coral-dominated ecosystems is to be avoided.
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  • 21
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    Oxford University Press
    In:  Journal of Molluscan Studies, 73 (3). pp. 287-289.
    Publication Date: 2021-08-31
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  • 22
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    Oxford University Press
    In:  Integrative and Comparative Biology, 47 (4). pp. 645-655.
    Publication Date: 2021-09-03
    Description: Mechanisms that affect thermal tolerance of ectothermic organisms have recently received much interest, mainly due to global warming and climate-change debates in both the public and in the scientific community. In physiological terms, thermal tolerance of several marine ectothermic taxa can be linked to oxygen availability, with capacity limitations in ventilatory and circulatory systems contributing to oxygen limitation at extreme temperatures. The present review briefly summarizes the processes that define thermal tolerance in a model cephalopod organism, the cuttlefish Sepia officinalis, with a focus on the contribution of the cephalopod oxygen-carrying blood pigment, hemocyanin. When acutely exposed to either extremely high or low temperatures, cuttlefish display a gradual transition to an anaerobic mode of energy production in key muscle tissues once critical temperatures (Tcrit) are reached. At high temperatures, stagnating metabolic rates and a developing hypoxemia can be correlated with a progressive failure of the circulatory system, well before Tcrit is reached. However, at low temperatures, declining metabolic rates cannot be related to ventilatory or circulatory failure. Rather, we propose a role for hemocyanin functional characteristics as a major limiting factor preventing proper tissue oxygenation. Using information on the oxygen binding characteristics of cephalopod hemocyanins, we argue that high oxygen affinities (= low P50 values), as found at low temperatures, allow efficient oxygen shuttling only at very low venous oxygen partial pressures. Low venous PO2s limit rates of oxygen diffusion into cells, thus eventually causing the observed transition to anaerobic metabolism. On the basis of existing blood physiological, molecular, and crystallographical data, the potential to resolve the role of hemocyanin isoforms in thermal adaptation by an integrated molecular physiological approach is discussed.
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  • 23
    Publication Date: 2021-08-23
    Description: Recent molecular studies investigating higher-level phylogenetics of coleoid cephalopods (octopuses, squids and cuttlefishes) have produced conflicting results. A wide range of sequence alignment and analysis methods are used in cephalopod phylogenetic studies. The present study investigated the effect of commonly used alignment and analysis methods on higher-level cephalopod phylogenetics. Two sequence homology methods: (1) eye alignment, (2) implied alignment, and three analysis methods: (1) parsimony, (2) maximum likelihood, (3) Bayesian methodologies, were employed on the longest sequence dataset available for the coleoid cephalopods, comprising three mitochondrial and six nuclear loci. The data were also tested for base composition heterogeneity, which was detected in three genes and resolved using RY coding. The Octopoda, Argonautoidea, Oegopsida and Ommastrephidae are monophyletic in the phylogenies resulting from each of the alignment and analysis combinations. Furthermore, the Bathyteuthidae are the sister taxon of the Oegopsida in each case. However many relationships within the Coleoidea differed depending upon the alignment and analysis method used. This study demonstrates how differences in alignment and analysis methods commonly used in cephalopod phylogenetics can lead to different, but often highly supported, relationships.
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  • 24
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2023-11-08
    Description: A detailed reconstruction of West African monsoon hydrology over the past 155,000 years suggests a close linkage to northern high-latitude climate oscillations. Ba/Ca ratio and oxygen isotope composition of planktonic foraminifera in a marine sediment core from the Gulf of Guinea, in the eastern equatorial Atlantic (EEA), reveal centennial-scale variations of riverine freshwater input that are synchronous with northern high-latitude stadials and interstadials of the penultimate interglacial and the last deglaciation. EEA Mg/Ca-based sea surface temperatures (SSTs) were decoupled from northern high-latitude millennial-scale fluctuation and primarily responded to changes in atmospheric greenhouse gases and low-latitude solar insolation. The onset of enhanced monsoon precipitation lags behind the changes in EEA SSTs by up to 7000 years during glacial-interglacial transitions. This study demonstrates that the stadial-interstadial and deglacial climate instability of the northern high latitudes exerts dominant control on the West African monsoon dynamics through an atmospheric linkage.
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  • 25
    Publication Date: 2019-09-23
    Description: Sampling an intact sequence of oceanic crust through lavas, dikes, and gabbros is necessary to advance the understanding of the formation and evolution of crust formed at mid-ocean ridges, but it has been an elusive goal of scientific ocean drilling for decades. Recent drilling in the eastern Pacific Ocean in Hole 1256D reached gabbro within seismic layer 2, 1157 meters into crust formed at a superfast spreading rate. The gabbros are the crystallized melt lenses that formed beneath a mid-ocean ridge. The depth at which gabbro was reached confirms predictions extrapolated from seismic experiments at modern mid-ocean ridges: Melt lenses occur at shallower depths at faster spreading rates. The gabbros intrude metamorphosed sheeted dikes and have compositions similar to the overlying lavas, precluding formation of the cumulate lower oceanic crust from melt lenses so far penetrated by Hole 1256D.
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  • 26
    Publication Date: 2016-01-01
    Description: By amplifying the melanocortin type 1 receptor from the woolly mammoth, we can report the complete nucleotide sequence of a nuclear-encoded gene from an extinct species. We found two alleles and show that one allele produces a functional protein whereas the other one encodes a protein with strongly reduced activity. This finding suggests that mammoths may have been polymorphic in coat color, with both dark- and light-haired individuals co-occurring.
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  • 27
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 312 (5777). pp. 1146-1148.
    Publication Date: 2016-06-15
    Description: Draining of a huge lake into the Northern Atlantic may have triggered a cold period ~12,900 years ago. The route taken by the flood waters remains unknown.
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  • 28
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 309 (5739). pp. 1365-1369.
    Publication Date: 2019-09-23
    Description: The open oceans comprise most of the biosphere, yet patterns and trends of species diversity there are enigmatic. Here, we derive worldwide patterns of tuna and billfish diversity over the past 50 years, revealing distinct subtropical "hotspots" that appeared to hold generally for other predators and zooplankton. Diversity was positively correlated with thermal fronts and dissolved oxygen and a nonlinear function of temperature (~25°C optimum). Diversity declined between 10 and 50% in all oceans, a trend that coincided with increased fishing pressure, superimposed on strong El Niño–Southern Oscillation–driven variability across the Pacific. We conclude that predator diversity shows a predictable yet eroding pattern signaling ecosystem-wide changes linked to climate and fishing.
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  • 29
    Publication Date: 2016-09-08
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  • 30
    Publication Date: 2019-03-06
    Description: The basal position of the Mamiellales (Prasinophyceae) within the green lineage makes these unicellular organisms key to elucidating early stages in the evolution of chlorophyll a/b-binding light-harvesting complexes (LHCs). Here, we unveil the complete and unexpected diversity of Lhc proteins in Ostreococcus tauri, a member of the Mamiellales order, based on results from complete genome sequencing. Like Mantoniella squamata, O. tauri possesses a number of genes encoding an unusual prasinophyte-specific Lhc protein type herein designated "Lhcp". Biochemical characterization of the complexes revealed that these polypeptides, which bind chlorophylls a, b, and a chlorophyll c-like pigment (Mg-2,4-divinyl-phaeoporphyrin a 5 monomethyl ester) as well as a number of unusual carotenoids, are likely predominant. They are retrieved to some extent in both reaction center I (RCI)- and RCII-enriched fractions, suggesting a possible association to both photosystems. However, in sharp contrast to previous reports on LHCs of M. squamata, O. tauri also possesses other LHC subpopulations, including LHCI proteins (encoded by five distinct Lhca genes) and the minor LHCII polypeptides, CP26 and CP29. Using an antibody against plant Lhca2, we unambiguously show that LHCI proteins are present not only in O. tauri, in which they are likely associated to RCI, but also in other Mamiellales, including M. squamata. With the exception of Lhcp genes, all the identified Lhc genes are present in single copy only. Overall, the discovery of LHCI proteins in these prasinophytes, combined with the lack of the major LHCII polypeptides found in higher plants or other green algae, supports the hypothesis that the latter proteins appeared subsequent to LHCI proteins. The major LHC of prasinophytes might have arisen prior to the LHCII of other chlorophyll a/b-containing organisms, possibly by divergence of a LHCI gene precursor. However, the discovery in O. tauri of CP26-like proteins, phylogenetically placed at the base of the major LHCII protein clades, yields new insight to the origin of these antenna proteins, which have evolved separately in higher plants and green algae. Its diverse but numerically limited suite of Lhc genes renders O. tauri an exceptional model system for future research on the evolution and function of LHC components. © The Author 2005. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved.
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  • 31
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 307 (5717). p. 1927.
    Publication Date: 2021-09-07
    Description: Here we report bipedal movement with a hydrostatic skeleton. Two species of octopus walk on two alternating arms using a rolling gait and appear to use the remaining six arms for camouflage. Octopus marginatus resembles a coconut, and Octopus (Abdopus) aculeatus, a clump of floating algae. Using underwater video, we analyzed the kinematics of their strides. Each arm was on the sand for more than half of the stride, qualifying this behavior as a form of walking.
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  • 32
    Publication Date: 2022-03-21
    Type: info:eu-repo/semantics/bookPart
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  • 33
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 286 (5442). pp. 1132-1135.
    Publication Date: 2016-06-10
    Description: Chlorofluorocarbon-11 inventories for the deep Southern Ocean appear to confirm physical oceanographic and geochemical studies in the Southern Ocean, which suggest that no more than 5 × 106 cubic meters per second of ventilated deep water is currently being produced. This result conflicts with conclusions based on the distributions of the carbon-14/carbon ratio and a quasi-conservative property, PO4 *, in the deep sea, which seem to require an average of about 15 × 106cubic meters per second of Southern Ocean deep ventilation over about the past 800 years. A major reduction in Southern Ocean deep water production during the 20th century (from high rates during the Little Ice Age) may explain this apparent discordance. If this is true, a seesawing of deep water production between the northern Atlantic and Southern oceans may lie at the heart of the 1500-year ice-rafting cycle.
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  • 34
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 284 (5411). pp. 118-120.
    Publication Date: 2019-05-10
    Description: A coral reef represents the net accumulation of calcium carbonate (CaCO3) produced by corals and other calcifying organisms. If calcification declines, then reef-building capacity also declines. Coral reef calcification depends on the saturation state of the carbonate mineral aragonite of surface waters. By the middle of the next century, an increased concentration of carbon dioxide will decrease the aragonite saturation state in the tropics by 30 percent and biogenic aragonite precipitation by 14 to 30 percent. Coral reefs are particularly threatened, because reef-building organisms secrete metastable forms of CaCO3, but the biogeochemical consequences on other calcifying marine ecosystems may be equally severe.
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  • 35
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    Oxford University Press
    Publication Date: 2022-02-23
    Description: Rayleigh fractionation is an important, open system process that involves the progressive removal of a fractional increment of a trace substance from a larger reservoir. A consistent relationship, such as a distribution coefficient, equilibrium constant, or a fractionation factor, is maintained between the reservoir and each increment at the instant of its formation, but, once formed, each increment is thereafter removed or otherwise isolated from the system. The mathematical constraints of this process include the distribution coefficient along with a statement of material balance in the shrinking system. These constraints may be combined into a single differential equation that may be integrated to a well-known relationship discovered by Rayleigh (1902). Examples of this common process include condensation, distillation, and the formation of crystals from a melt or a solution. As shown in the following, Rayleigh fractionation explains many different characteristics of meteoric waters, and provides a first-order explanation of the MWL
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  • 36
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    American Institute of Physics (AIP)
    In:  Physics Today, 51 (12). p. 32.
    Publication Date: 2021-02-25
    Description: Bringer of storms and droughts, the El Niño∕Southern Oscillation results from the complex, sometimes chaotic interplay of ocean and atmosphere.
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  • 37
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    Oxford University Press
    In:  In: Tectonic Boundary Conditions for Climate Reconstructions. , ed. by Crowley, T. J. and Burke, K. C. Oxford Monographs on Geology and Geophysics, 39 . Oxford University Press, New York, pp. 116-143. ISBN 0-19-511245-8
    Publication Date: 2018-02-06
    Type: Book chapter , NonPeerReviewed
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  • 38
    Publication Date: 2021-04-21
    Description: Length-frequency data on squid (Loligo forbesi) collected during trawling surveys in Scottish waters from 1980 to 1994 were analysed to describe temporal and spatial patterns in abundance and to examine the prospects for using survey abundance to forecast fishery abundance. Loligo was patchily distributed in space and time. Distribution patterns in the North Sea in February appeared to be strongly related to bottom temperature (squid avoided waters 〈7°C) and, to a lesser extent, salinity (more squid in more saline water). For other areas and times, no temperature or salinity data were available, but there were trends for squid on the west coast to be more abundant in westerly areas and higher latitudes, and for squid at Rockall to be more abundant in shallow water. Inter-annual trends in abundance differed between the North Sea, west coast and Rockall, but average survey abundances for the North Sea and west coast tended to be positively correlated. For the North Sea and west coast, survey abundance was positively correlated with fishery abundance for the same month and area, and average abundance for the February North Sea survey was a reasonable predictor of commercial CPUE in the autumn of the same year (the peak of the fishery). Some of the observed trends were consistent with the existence of a stock-recruitment relationship but may indicate that abundance in a given calendar year is linked to climatic factors.
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  • 39
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    Oxford University Press
    In:  Journal of Molluscan Studies, 64 (1). pp. 21-34.
    Publication Date: 2021-04-21
    Description: An investigation was carried out on the recently discovered ‘giant’ extra large (XL) form of the squid Sthenoteuthis oualaniensis from the Arabian Sea. The sample consisted of 2 males, which have not been previously described, and 13 females. Diet composition, parasite loading, sucker ring dentition, biolumi-nescence and sexual dimorphism were examined and compared to known parameters of the medium (M) form. Reproductive strategy, potential fecundity, egg size distribution in the ovary and oviducts were examined in mature XL females. Evidence of multiple spawning in the giant form was also investigated. Overall body shape, bioluminescent structures and coloration of the giant form were similar to the M form, though the XL form had a smaller fin angle than the M form. The mature female XL form has a dorsal mantle length about twice that of a mature female M form. Adult females of the XL form have a dorsal mantle length about twice that of adult males of the same form. Differences between males and females were found in arm sucker ring dentition and parasite load, suggesting a difference in diet. This could be linked to size differences between the sexes. A strong correlation between ovary mass and mantle length was found (r2 = 0.64). Poor correlation was found between mantle length and oviduct mass (r2 = 0.128) and potential fecundity (r2 = 0.07). Potential fecundity ranged between 2–5 million eggs and the holding capacity of the oviducts was approximately 300, 000 eggs. This combined with the presence of spermatangia and the presence of food in the stomach suggest that the XL form is a multiple spawner. S. oualaniensis appears to have a plastic phenotype and has adapted to the Arabian Sea conditions by evolving the capacity to grow to a giant size.
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  • 40
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    Oxford University Press
    In:  Journal of Mammalogy, 79 (3). pp. 1045-1059.
    Publication Date: 2021-06-28
    Description: Stomach contents of a resident community of bottlenose dolphins (Tursiops truncatus) from the Sarasota Bay area of the westcentral coast of Florida were studied to examine potential factors leading to patterns of habitat use. Composition and size of prey were analyzed and correlated with feeding behavior of individual dolphins of known histories. Examination of stomach contents of 16 stranded dolphins revealed a diet composed exclusively of fish (15 species), most of which were associated with seagrasses in varying degrees. Observational records for 21 years showed that feeding typically occurred in shallow (2–3 m) waters and in the vicinity of seagrasses in 23% of cases. Dolphins usually fed alone or in small groups and on non-obligate schooling prey. The main species of prey were soniferous, an indication that passive listening may be important in detection of prey. The close agreement between species of fishes represented in stomach contents and habitat of prey, as indicated by observations of feeding, suggests that analysis of stomach contents is a reasonable approach for studying prey and feeding patterns of dolphins. Meadows of seagrass are one of the habitats of importance to dolphins in the Sarasota Bay area, and their protection is important for conservation of these animals.
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  • 41
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    Oxford University Press
    In:  New York, Oxford University Press, vol. 4, no. 1, pp. 1-40, (ISBN: 1-4020-1348-5 hb, ISBN: 1-4020-1349-3 pb)
    Publication Date: 1997
    Keywords: Textbook of geology ; Seismology ; Tectonics ; Crustal deformation (cf. Earthquake precursor: deformation or strain) ; Earthquake hazard ; Earthquake risk ; Induced seismicity ; Magnitude ; Maximum likelihood
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  • 42
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    Oxford University Press
    In:  Journal of Molluscan Studies, 63 . pp. 19-28.
    Publication Date: 2021-04-16
    Description: The sexual cycle of the cuttlefish, Sepia officinalis, from the northern part of the Bay of Biscay was followed over several years (1988 to 1990 and 1992 to 1993). Sucessive maturity stages are reached at the same time regardless of site in the northern part of the Bay. In this area, the majority of cuttlefish reproduce during their second year of life (group II) whereas the remainder reproduce in their first year (group I). The first visible signs of sexual development concern the testis in males and the genital tract in females. Males mature earlier than females: the first spermatophores appear in July (group II) and October (group I) while mature eggs appear from December (group II) and March (group I). The breeding season lasts from about mid-March to late June (3.5 months).
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  • 43
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    Oxford University Press
    In:  Journal of Molluscan Studies, 63 (3). pp. 311-325.
    Publication Date: 2021-04-19
    Description: Parsimony analysis of 29 finned and finless octopod taxa considered 66 anatomical and morphological characters to discover synapomorphies that unite monophyletic groups. The resultant cladogram (177 equally parsimonious trees at 191 steps, CI 0.429) resolved all relationships except those among the 16 exemplars of the Octopodidae included and those among Tremoctopus, Ocythoe and Argonauta. Bootstrap values of over 90% support the monophyly of the finned and finless octopods, relationships among the finned octopods, the bolitaenids and the monophyly of Haliphron, Tremoctopus, Ocythoe and Argonauta; bootstrap values for other nodes range from 57 to 79%. Among finned octopods, specimens representing Grimpoteuthis are basal, as Voss (1988a) suggested. Specimens of Opisthoteuthis represent a distinct lineage, and are sister taxon, in this analysis, of Cirroteuthis (although specimens of Stauroteuthis could not be included). New definitions of the genera Opisthoteuthis and Grimpoteuthis are provided to reflect their separate evolutionary histories rather than their overt morphological similarity. Among finless octopods, bolitaenids are basal. The monophyletic Octopodidae is the sister taxon to the clade containing the sister taxa Vitreledonella and Amphitretus, and Haliphron, Tremoctopus, Ocythoe and Argonauta. The Ctenoglossa and Heteroglossa, families grouped by shared radular dentition, are diphyletic and paraphyletic, respectively. The cladistic relationships demonstrate that both the Vitrele-donellidae and Idioctopodidae are junior synonyms of the Amphitretidae; despite conspicuous morphological differences separating these taxa, they share a recent evolutionary history.
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  • 44
    Publication Date: 2021-04-21
    Description: The microstructure, morphology and ontogenetic development of statoliths and age and growth of 405 planktonic paralarvae and 117 juveniles belonging to 10 species of gonatid squids (Cephalopoda, Oegopsida) were studied in the region of the continental slope in the western part of the Bering Sea (57°00′–61°30′N, 163°00′E–179°20′W). The statolith microstructure of all species was characterized by the presence of a large droplet-shaped nucleus and bipartite postnuclear zone divided into two by the first stress check, except for Berryteuthis magister which had only one stress check and an undivided postnuclear zone. In Gonatus spp., completion of development of the postnuclear zone coincided with full development of the central hook on the tentacular club. Daily periodicity of statolith growth increments was validated by maintaining 13 paralarvae of the four most abundant species in captivity. All species might be subdivided into two groups based on statolith microstructure, i.e. species with a central position of the nucleus within the first statolith check (Gonatopsis spp., Egonatus tinro and B.magister) and species with the nucleus shifted to the inner side of the first statolith check (Gonatus spp.). Comparative analysis of statolith morphology showed that paralarval statoliths have species-specific characters that allowed the construction of keys to identify species of gonatid paralarvae based on their statoliths. Analysis of paralarval growth using statoliths revealed that these cold-water planktonic gonatid paralarvae have fast growth rates, attaining a mantle length of 7–10 mm at 15–20 days and 20–25 mm at 35–70 days.
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  • 45
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    Oxford University Press
    In:  Journal of Molluscan Studies, 63 (2). pp. 287-290.
    Publication Date: 2021-04-21
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  • 46
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 276 (5320). p. 1790.
    Publication Date: 2021-04-15
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  • 47
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    Oxford University Press
    In:  Journal of Molluscan Studies, 63 (2). pp. 290-293.
    Publication Date: 2021-05-03
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  • 48
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 272 (5270). pp. 1902-1904.
    Publication Date: 2016-06-16
    Description: During glacial cycles, different parts of the Earth cool by different amounts. A growing collection of evidence has begun to show that cooling in the tropical oceans was greater than previously thought. In his Perspective, Broecker discusses the oxygen isotope evidence reported by Schrag et al. (p. 1930) that indicates that the cooling in deep tropical water was close to the freezing point.
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  • 49
    Publication Date: 2021-01-19
    Description: Statolith microstructure was studied in two abundant planktonic cranchiids, Cranchia scabra (56 specimens, 38-127mm mantle lengh, ML) and Liocranchia reinhardti (34 specimens, 99-205mm ML) sampled in epipelagic waters of the western part of the Gulf of Guinea (tropical Atlantic). Growth increments were revealed in ground statoliths of both species. It was possible to distinguish two growth zones in statolith microstructure by their colour in reflected light of the microscope: the translucent postnuclear zone and pale white opaque zone. Assuming that growth increments in statoliths were produced daily, ages of the largest immature C. scabra and L. reinhardti were 166 and 146 days, respectively. Both cranchiids are fast-growing squids with growth rates in length resembling those of juveniles of tropical ommastrephids and Thysanoteuthis rhombus. Liocranchia reinhardti grows faster: its growth rate in ML is approximately twice that of same-aged C. scabra. The life cycle of both cranchiids consists of two phases. During their epipelagic phase, C. scabra and L. reinhardti feed and grow rapidly from paralarvae to immature young in the epipelagic waters, attaining 120-130 and 170-200 mm ML by ages of 4-5 months, respectively. Then they change their life style to a deepwater phase.
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  • 50
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    Oxford University Press
    In:  Journal of Molluscan Studies, 62 . pp. 359-366.
    Publication Date: 2020-11-19
    Description: Age composition and growth rates of the squid Loligo vulgaris (Lamark, 1797) were studied by examination of growth increments within statoliths of 419 specimens (mantle length, ML, ranging from 32 to 400mm). The squid were obtained by monthly sampling from the catches of commercial trawls off southern Portugal between March and September, 1993. The total number of growth increments in the mounted and ground statoliths was counted using a semi-automatic image analysis system. ML was significantly correlated with both the statolith length, TSL and the number of increments, NI. The female statolith was slightly larger than the male statolith for the same mantle size. Growth rates of individuals showed high variability with an average estimated at 34.6mm month-1 for males and 33.5mm month-1 for females. Growth in length between 70 and 280 days was best described by a power function for both sexes. The growth index of the statolith (TSL/NI) decreased with individual growth. The result may be related with the onset of sexual maturation. L. vulgaris hatched throughout the year with two distinct peaks, in spring which is the main breeding period, and in autumn. The life cycle of the L. vulgaris population on the south Portugese shelf was completed in one year.
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  • 51
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 269 (5224). pp. 676-679.
    Publication Date: 2019-05-10
    Description: Greenland ice-core data have revealed large decadal climate variations over the North Atlantic that can be related to a major source of low-frequency variability, the North Atlantic Oscillation. Over the past decade, the Oscillation has remained in one extreme phase during the winters, contributing significantly to the recent wintertime warmth across Europe and to cold conditions in the northwest Atlantic. An evaluation of the atmospheric moisture budget reveals coherent large-scale changes since 1980 that are linked to recent dry conditions over southern Europe and the Mediterranean, whereas northern Europe and parts of Scandinavia have generally experienced wetter than normal conditions.
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  • 52
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    Oxford University Press
    In:  ICES Journal of Marine Science, 199 . pp. 445-458.
    Publication Date: 2020-11-19
    Description: A study of individual and group growth rates based on a method of growth determination using the gladius was carried out in two populations of the purple-back flying squid (Sthenoteuthis oualaniesis) in the Arabian Sea. The duration of the life cycle in all populations and size groups examined was approximately one year. The growth pattern of linear increase was either slightly S-shaped or almost linear, while growth in weight followed a power-type pattern. Generally, females grew faster than males. Use of the gladius as a recording structure makes it possible to study the real growth of a specimen, rather than the statistical correlation of length/weight versus age, as in the commonly used statolith method. Analysis of individual growth rates in large-sized sawning females revealed growth rhythm with roughly a one-month periodicity in which phases of rapid growth (17-21 days; 1.6-3,6mm per day) alternate with phases of slow growth (12-14 days; 0.4-1.2mm per day). This new method is simple to use and may be applied even on board a vessel during research cruises.
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  • 53
    facet.materialart.
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 204 (4391). pp. 404-407.
    Publication Date: 2019-05-24
    Description: The strontium to calcium ratio of skeletal aragonite in three genera of reef-building corals varies as a simple function of temperature and the strontium to calcium ratio of the incubation water. The strontiumlcalcium distribution coefficients of coral aragonite apparently differ from the corresponding coefficient of inorganically precipitated aragonite. With some care, coral skeletons can be used as recording thermometers.
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  • 54
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 197 (4298). pp. 53-55.
    Publication Date: 2018-02-07
    Description: Estimation of average Cenozoic sedimentation rates for the Atlantic, Indian, and Pacific oceans indicates global synchronous fluctuations. Paleocene-early Eocene and late Eocene-early Miocene rates are only a fraction of middle Eocene and middle Miocene-Recent rates. These changes must reflect significantly different modes of continental weathering, which may be due to alternate states of atmospheric circulation marked by reduction of global precipitation.
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  • 55
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    American Association for the Advancement of Science (AAAS)
    In:  Science, 191 (4231). pp. 1046-1048.
    Publication Date: 2020-05-08
    Description: Midwater squid respond to overhead illumination by turning on numerous downward-directed photophores; they turn off the photophores when overhead illumination is eliminated. The squid are invisible when the intensity of the photophores matches the intensity of the overhead illumination. These results strongly support the theory of ventral bioluminescent countershading.
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