ALBERT

Description: Experimental studies linking community composition to functioning are typically confined to small and closed micro- or mesocosms. Such restricted conditions may affect both species’ biology and their environment. Yet, targeting simple features in the behaviour of species may circumvent these constraints. Focusing on ecological functions provided by dung beetles, we test whether large, open-top cages – MESOCLOSURES – will intercept the flight trajectories of beetles, thereby allowing manipulation of local community composition. MESOCLOSURES were built in both tropical forest (Brazil) and temperate grasslands (Finland), thus testing their general efficiency. Within the respective environments, we varied different aspects of MESOCLOSURE design: in the tropical forest, we examined the impact of MESOCLOSURE dimensions on exclusion efficiency, whereas in the temperate grassland, we assessed the potential for selectively excluding and including community members by different mesh sizes. In the temperate environment, we also went from method to application, using MESOCLOSURES to relate community composition to functioning under two simulated grazing regimes. MESOCLOSURES allowed efficient manipulation of dung beetle communities, maintaining dung beetle densities at intended levels in both temperate and tropical systems. In the tropics, the smallest cages (1 × 1 m) offered the highest contrast in beetle densities inside vs. outside of the fence, whereas the largest cages (9 × 9 m) offered the lowest. Nonetheless, densities inside cages never exceed one-fifth of those outside. At the temperate site, manipulations of community structure through mesh size yielded significant differences in functioning and suggested an interaction between small dung-dwelling species and large tunnelling species. Within cages, higher grazing was reflected in augmented dung removal. We conclude that MESOCLOSURES can be effectively used to study dung beetle functions across habitats and latitudes. As applied insights, the present study adds resolution to the significance of different functional groups of dung beetles and shows that grazing pressure may have an important impact on the ecosystem functions that they provide. Overall, this study suggests that targeted manipulation of dispersal may offer new solutions for linking fauna to ecosystem functions with minimal impact on the processes measured.

Description: Food supply is one of the main factors driving cold-water corals (CWC) distribution, which often concentrate on ridges where local near-bed turbulence/strong currents enhance food availability. However, efficiency in food capture is strongly dependent on current velocity. Moreover, seawater temperature may also affect feeding success, since polyp contraction or nematocyst function could be slower at temperatures below the natural thermal range of a species. The non-reef forming CWC Dendrophyllia cornigera occurs in areas at temperatures from 11 to 17 °C, but is apparently absent from most CWC reefs at temperatures constantly below 11 °C. This study thus aimed to assess if a reduction in feeding capacity may contribute to understand the absence of this CWC from strictly cold environments. The efficiency of D. cornigera to capture meso- and macrozooplankton was assessed under different flow speeds (2, 5 and 10 cm s − 1) and temperatures (8, 12, and 16 °C). Flow speeds did not significantly affect the capture of mesozooplankton, whereas capture of macrozooplankton was significantly enhanced with increasing flow speed. Both meso- and macrozooplankton captures were not significantly affected by temperature in D. cornigera. Overall, this CWC species is efficient in capturing zooplankton under a larger range of flow velocities than the widespread CWC Lophelia pertusa, whose capture efficiency significantly decreased from low to high flow speeds. Even if temperature does not directly affect the capture rates of D. cornigera, it may still influence the feeding capacity of this CWC since the capture rates at 8 °C were always in the lowest range of the observed values at each flow speed, and corals maintained at 8 °C required a much longer time to fully expand their polyps once they were placed in the incubation chambers, than corals maintained at 12 and 16 °C.

Description: At the largest time and space scales, the pace of erosion and chemical weathering is determined by tectonic uplift rates. Deviations from equilibrium arise from the transient response of landscape denudation to climatic and tectonic perturbations. We posit that the constraint of mass balance, however, makes it unlikely that such disequilibrium persists at the global scale over millions of years, as has been proposed for late Cenozoic erosion. We synthesize weathering fluxes, global sedimentation rates, sediment yields and tectonic motions to show a remarkable constancy in the pace of Earth-surface evolution over the last 10 Ma and support the null hypothesis – that global rates of landscape change have remained constant over this time period, despite global climate change and mountain building events. This work undermines the hypothesis that increased weathering due to mountain building or climate change was the primary agent for a decrease in global temperatures.

Description: Submarine groundwater discharge (SGD) is an important component of chemical fluxes in the coastal ocean. The composition of SGD is influenced by biogeochemical reactions that take place within the subterranean estuary (STE), the subsurface mixing zone of fresh and saline groundwaters. The STE is characterized by redox gradients that affect the speciation and mobility of redox-sensitive elements (RSEs). We examined the distributions and behavior of the RSEs Mo, U, V, and Cr within the larger redox framework of a shallow STE and evaluated the source-sink function of the STE for these elements. We found that the advection of water through the STE and the apparent respiration of organic matter drives the formation of a “classic” redox sequence typically observed in diffusion-dominated fine-grained sediments. High concentrations of dissolved organic matter (up to 2.9 mM) lead to extensive sulfide production (up to 1.8 mM) within 3 m of the surface. Both Mo and U are quantitatively removed as oxic surface waters mix into ferruginous and sulfidic zones. Molybdenum removal appears to occur where sulfide concentrations exceed ~ 11 μM, a previously reported threshold for quantitative formation of highly particle-reactive thiomolybdate species. Uranium removal apparently occurs via reduction and formation of insoluble phases or sorption to sediments. It is not clear how readily sequestered metals may be returned to solution, but SGD may be an important sink in the marine budget for both Mo and U. In contrast, both V and Cr show non-conservative addition across the salinity mixing gradient. Increases in pH appear to promote dissolution of V from minerals within the shallow aquifer, and mobilization may also be associated with dissolved organic matter. Chromium enrichment is associated with higher dissolved organic matter and is likely due to the formation of soluble Cr-organic complexes. Fluxes of these elements were constrained using SGD volume fluxes, determined using radium isotopes as well as direct discharge measurements by Lee-type seepage meters, and concentrations in directly-sampled seepage (Mo: − 0.21 to − 7.7 μmol m− 2 day− 1; U: − 0.02 to − 0.6 μmol m− 2 day− 1; V: 0.05 to 2.0 μmol m− 2 day− 1; Cr: 0.12 to 4.4 μmol m− 2 day− 1).

Description: Intercellular adhesion molecule-1 (ICAM-1) is distributed and expressed on cell surface and is present in circulation as soluble form (sICAM-1). Tumor necrosis factor-alpha (TNFα) and radical oxygen species (ROS) up-regulate the expression of ICAM-1. This study demonstrates for the first time in 18 Co cells, a myofibroblast cell line derived from human colonic mucosa, an up-regulation of ICAM-1 expression and sICAM-1 release induced by oxidative stress and TNFα stimulation. The intracellular redox state was modulated by L-buthionine-S,R-sulfoximine (BSO) or N-acetylcysteine (NAC), inhibitor and precursor respectively of GSH synthesis. ROS production increases in cells treated with BSO or TNFα, and this has been related to an up-regulation of ICAM-1 expression and sICAM-1 release. The involvement of metalloproteinases in ICAM-1 release has been demonstrated. Moreover, also expression and activation of A disintegrin and metalloproteinase 17, a membrane-bound enzyme known as TNFα-converting enzyme (TACE), have been related to ROS levels. This suggests the possible involvement of TACE in the cleavage of ICAM-1 on cell surface in condition of oxidative stress. NAC down-regulates the expression and release of ICAM-1 as well as the expression and activation of TACE. However, in TNFα stimulated cells NAC treatment reduces only in part ICAM-1 expression and sICAM-1 release. Given this TNFα may also act on these events by a redox-independent mechanism.

Description: The Neoarchean-Paleoproterozoic Transvaal Supergroup in South Africa contains the well-preserved stromatolitic Campbellrand-Malmani carbonate platform, which was deposited in shallow seawater shortly before the 2.40–2.32 Ga Great Oxidation Event (GOE). This platform is composed of alternating stromatolitic carbonates and mudstones and is a prominent candidate for (isotope-) geochemical mapping to investigate the appearance of very small amounts of free oxygen that accumulated in shallow waters preceding the GOE. Mo isotopes in sedimentary archives are widely used as a proxy for redox-changes in modern and ancient environments and recent evidence suggests that oxy-molybdate (MoO42−) is directly transferred from ocean water to inorganic carbonates with negligible fractionation, thus reflecting oceanic Mo isotope signatures. In this study we analyzed major and trace element compositions as well as Mo isotopic compositions of carbonate and mudstone samples from the KMF-5 drill core. Geochemical indicators, such as Fe and Mn concentrations and Fe-to-Mn abundance ratios reveal the preservation of some geochemical indicators despite the widespread silicification and dolomitization of the platform. Heavy δ30Si values of silicified carbonates between 0.53 and 2.35‰ point to Si precipitation from surface water during early diagenesis rather than to a later hydrothermal overprint. This assessment is supported by the frequent observation of rip-up structures of silica (chert) layers within the entire sedimentary succession. The δ98Mo values of whole rock samples throughout the Malmani-Campbellrand platform range between −0.82 and +1.40‰, similar to values reported for deeper slope carbonates from the Griqualand West area, but variations are independent from lithology or depositional water depth. These large variations in δ98Mo values indicate molybdenum redox cycling and thus the presence of free oxygen in the atmosphere-ocean system at that time, in agreement with earlier Mo isotopic studies on Campbellrand carbonates and shales. A similar range in δ98Mo values for carbonates between +0.40 and +0.87‰, however, was also found on the hand specimen scale, indicating the danger of a sample bias on the Mo isotopic stratigraphy of this carbonate platform. Results of previously unpublished adsorption experiments of Mo on CaCO3 clearly indicate that the Mo inventory of Malmani-Campbellrand carbonates was not only influenced by primary adsorption from seawater, but to a much larger degree by secondary processes during early diagenesis, which also affected the Mo isotopic composition of the samples on a local scale. Our results indicate that Mo concentrations and isotopic compositions in ancient stromatolitic carbonates were subject to redox changes within microbial mats and within the soft sediment during early diagenesis and later lithification, and as such cannot be used to quantitatively reconstruct the amount of free atmospheric oxygen or its fluctuations through Earth's history. Nevertheless, we interpret our heavy Mo isotopic signatures from carbonates as a minimum value for Neoarchean seawater and reinforce the assumption that free atmospheric oxygen built up a heavy oceanic Mo reservoir at that time.

Description: Throughout at least the past several centuries, El Niño-Southern Oscillation (ENSO) has played a significant role in human response to climate. Over time, increased attention on ENSO has led to a better understanding of both the physical mechanisms, and the environmental and societal consequences of the phenomenon. The prospects for seasonal climate forecasting emerged from ENSO studies, and were first pursued in ENSO studies. In this paper, we review ENSO's impact on society, specifically with regard to agriculture, water, and health; we also explore the extent to which ENSO-related forecasts are used to inform decision making in these sectors. We find that there are significant differences in the uptake of forecasts across sectors, with the highest use in agriculture, intermediate use in water resources management, and the lowest in health. Forecast use is low in areas where ENSO linkages to climate are weak, but the strength of this linkage alone does not guarantee use. Moreover, the differential use of ENSO forecasts by sector shows the critical role of institutions that work at the boundary between science and society. In a long-term iterative process requiring continual maintenance, these organizations serve to enhance the salience, credibility, and legitimacy of forecasts and related climate services. WIREs Clim Change 2015, 6:17–34. doi: 10.1002/wcc.294.

Description: The analysis of high-resolution vector magnetic data acquired by deep-sea submersibles (DSSs) requires the development of specific approaches adapted to their uneven tracks. We present a method that takes advantage of (1) the varying altitude of the DSS above the seafloor and (2) high-resolution multibeam bathymetric data acquired separately, at higher altitude, by an Autonomous Underwater Vehicle, to estimate the absolute magnetization intensity and the magnetic polarity of the shallow subseafloor along the DSS path. We apply this method to data collected by DSS Nautile on a small active basalt-hosted hydrothermal site. The site is associated with a lack of magnetization, in agreement with previous findings at the same kind of sites: the contrast between nonmagnetic sulfide deposits/stockwork zone and strongly magnetized basalt is sufficient to explain the magnetic signal observed at such a low altitude. Both normal and reversed polarities are observed in the lava flows surrounding the site, suggesting complex history of accumulating volcanic flows.

Description: Current limitations in technology have prevented an extensive analysis of the connections among neurons, particularly within nonmammalian organisms. We developed a transsynaptic viral tracer originally for use in mice, and then tested its utility in a broader range of organisms. By engineering the vesicular stomatitis virus (VSV) to encode a fluorophore and either the rabies virus glycoprotein (RABV-G) or its own glycoprotein (VSV-G), we created viruses that can transsynaptically label neuronal circuits in either the retrograde or anterograde direction, respectively. The vectors were investigated for their utility as polysynaptic tracers of chicken and zebrafish visual pathways. They showed patterns of connectivity consistent with previously characterized visual system connections, and revealed several potentially novel connections. Further, these vectors were shown to infect neurons in several other vertebrates, including Old and New World monkeys, seahorses, axolotls, and Xenopus. They were also shown to infect two invertebrates, Drosophila melanogaster, and the box jellyfish, Tripedalia cystophora, a species previously intractable for gene transfer, although no clear evidence of transsynaptic spread was observed in these species. These vectors provide a starting point for transsynaptic tracing in most vertebrates, and are also excellent candidates for gene transfer in organisms that have been refractory to other methods.

Description: The diversity of stony corals displays one of the most exemplary latitudinal gradients on the planet, yet the evolutionary dynamics that produced this pattern remains unclear. Using both paleontological and distributional data, we compare the origination, extinction and immigration levels between low and high latitudes since the earliest proliferation of the group during the mid‐Triassic. Altogether, first and last occurrence localities in the fossil record do not support a positive preference towards either latitudinal bin. Nonetheless, considering past and present scleractinian fauna, the process of extinction has been apparently more pronounced at higher latitudes based on face values and correlation coefficients. Far above these differences, immigration of extant taxa has been substantially higher towards the tropics than to temperate regions. While the net dispersal toward low latitudes persists in all temporal intervals, the gradient of diversity was largely built up during the Cenozoic Era and only becomes significantly steep from the Neogene Period onwards. This dynamic supports the ‘into the tropical museum’ model, which suggests that tropics have historically acted as a center of accumulation for marine biodiversity.

Description: The movement of magma through the shallow crust and the impact of subsurface sill complexes on the hydrocarbon systems of prospective sedimentary basins has long been an area of interest and debate. Based on 3D seismic reflection and well data, we present a regional analysis of the emplacement and magmatic plumbing system of the Palaeogene Faroe‐Shetland Sill Complex (FSSC), which is intruded into the Mesozoic and Cenozoic sequences of the Faroe‐Shetland Basin (FSB). Identification of magma flow directions through detailed seismic interpretation of approximately 100 sills indicates that the main magma input zones into the FSB were controlled primarily by the NE–SW basin structure that compartmentalise the FSB into its constituent sub‐basins. An analysis of well data shows that potentially up to 88% of sills in the FSSC are 〈40 m in thickness, and thus below the vertical resolution limit of seismic data at depths at which most sills occur. This resolution limitation suggests that caution needs to be exercised when interpreting magmatic systems from seismic data alone, as a large amount of intrusive material could potentially be missed. The interaction of the FSSC with the petroleum systems of the FSB is not well understood. Given the close association between the FSSC and potential petroleum migration routes into some of the oil/gas fields (e.g. Tormore), the role the intrusions may have played in compartmentalisation of basin fill needs to be taken fully into account to further unlock the future petroleum potential of the FSB.

Description: Mesoscale eddies are ubiquitous features in the Southern Ocean, yet their phenomenology is not well quantified. To tackle this task, we use satellite observations of sea level anomalies and sea surface temperature (SST) as well as in situ temperature and salinity measurements from profiling floats. Over the period 1997–2010, we identified over a million mesoscale eddy instances and were able to track about 105 of them over 1 month or more. The Antarctic Circumpolar Current (ACC), the boundary current systems, and the regions where they interact are hot spots of eddy presence, representing also the birth places and graveyards of most eddies. These hot spots contrast strongly to areas shallower than about 2000 m, where mesoscale eddies are essentially absent, likely due to topographical steering. Anticyclones tend to dominate the southern subtropical gyres, and cyclones the northern flank of the ACC. Major causes of regional polarity dominance are larger formation numbers and lifespans, with a contribution of differential propagation pathways of long-lived eddies. Areas of dominance of one polarity are generally congruent with the same polarity being longer-lived, bigger, of larger amplitude, and more intense. Eddies extend down to at least 2000 m. In the ACC, eddies show near surface temperature and salinity maxima, whereas eddies in the subtropical areas generally have deeper anomaly maxima, presumably inherited from their origin in the boundary currents. The temperature and salinity signatures of the average eddy suggest that their tracer anomalies are a result of both trapping in the eddy core and stirring.

Description: Genome-scan methods are used for screening genomewide patterns of DNA polymorphism to detect signatures of positive selection. There are two main types of methods: (i) ‘outlier’ detection methods based on inline image that detect loci with high differentiation compared to the rest of the genome and (ii) environmental association methods that test the association between allele frequencies and environmental variables. We present a new inline image-based genome-scan method, BayeScEnv, which incorporates environmental information in the form of ‘environmental differentiation’. It is based on the F model, but, as opposed to existing approaches, it considers two locus-specific effects: one due to divergent selection and the other due to various other processes different from local adaptation (e.g. range expansions, differences in mutation rates across loci or background selection). The method was developped in C++ and is available at http://github.com/devillemereuil/bayescenv. A simulation study shows that our method has a much lower false positive rate than an existing inline image-based method, BayeScan, under a wide range of demographic scenarios. Although it has lower power, it leads to a better compromise between power and false positive rate. We apply our method to a human data set and show that it can be used successfully to study local adaptation. We discuss its scope and compare it to other existing methods.

Description: The March 13th 1888 collapse of Ritter Island in Papua New Guinea is the largest known sector collapse of an island volcano in historical times. One single event removed most of the island and its western submarine flank, and produced a landslide deposit that extends at least 70 km from the headwall of the collapse scar. We have mapped and described the deposits of the debris avalanche left by the collapse using full-coverage multibeam bathymetry, side-scan sonar backscatter intensity mapping, chirp seismic-reflection profiles, TowCam photographs of the seafloor and samples from a single dredge. Applying concepts originally developed on the 1980 Mount St. Helens collapse landslide deposits, we find that the Ritter landslide deposits show three distinct morphological facies: large block debris avalanche, matrix-rich debris avalanche and distal debris flow facies. Restoring the island's land and submarine topography we obtained a volume of 4.2 km3 for the initial collapse, about 75% of which is now forming the large block facies at distances less than 12 km from the collapse scar. The matrix-rich facies volume is unknown, but large scale erosion of the marine sediment substrate yielded a minimum total volume of 6.4 km3 in the distal debris flow and/or turbidite deposits, highlighting the efficiency of substrate erosion during the later history of the landslide movement. Although studying submarine landslide deposits we can never have the same confidence that subaerial observations provide, our analysis shows that well-exposed submarine landslide deposits can be interpreted in a similar way to subaerial volcano collapse deposits, and that they can in turn be used to interpret older, incompletely exposed submarine landslide deposits. Studying the deposits from a facies perspective provides the basis for reconstructing the kinematics of a collapse event landslide; understanding the mechanisms involved in its movement and deposition; and so providing key inputs to tsunami models.

Description: The Mediterranean mid-littoral zone is inhabited by two sympatric chthamalid barnacles: Chthamalus stellatus and Euraphia depressa, C. stellatus extends from the high midtidal zone, above the algal belt, to the supra-littoral fringe, E. depressa is restricted to the uppermost intertidal levels in wave-beaten places and to cryptic habitats lower on the shore within the belt of C. stellatus. Previous studies have suggested that the reason for the fragmented distribution pattern of E. depressa is competitive displacement by the sympatric C. stellatus, following random settlement. This hypothesis is in agreement with the common model of zonation suggested by Connell that lower distribution limits are determined by biotic factors (competition and predation), while upper limits are set by physical factors. It is hard to test the validity of this model for this barnacle pair since the early ontogenetic stages of the species are morphologically indistinguishable, hindering our ability to understand distribution processes. Using 16S mtDNA as a genetic marker in a multiplex PCR system, cyprids and spats were individually identified. Settlement and recruitment rates were assessed using settlement plates, and the effect of post-settlement processes was tested with transplantation of settlers between zones. Results showed different strategies in each species: settlement of E. depressa was habitat-specific, while settlement of C. stellatus was random. Shifting individuals of C. stellatus to the high and cryptic zones resulted in high mortality; however, exposing juveniles of E. depressa that settled in artificially cryptic low shore habitat to C. stellatus presence had no effect on their survival. These finding do not agree with the formerly suggested hypothesis that zonation is mainly determined by post-settlement factors, and that the interspecies boundary is determined by interspecific competition, implying that competition model cannot be adapted to Mediterranean intertidal zonation and that other models, dominated by physical enforcement and pre-settlement recruitment-limiting factors, may prevail in this ecosystem.

Description: In a recent letter, Thomsen and Wernberg (2015) reanalyzed data compiled for our recent paper (Lyons et al. 2014). In that paper, we examined the effects of macroalgal blooms and macroalgal mats on seven important measures of community structure and ecosystem functioning, and explored several ecological and methodological factors that might explain some of the variation in the observed effects. Thomsen and Wernberg (2015) reanalyzed two small subsets of the data, focusing on experimental studies examining effects of blooms/mats on invertebrate abundance. Their analyses revealed two interesting patterns.

Description: We present whole rock 187Os/188Os data for the most mafic lavas along the Lesser Antilles arc (MgO = 5–17 wt.%) and for the subducting basalt and sediments. 187Os/188Os ratios vary from 0.127 to 0.202 in the arc lavas. Inverse correlations between 187Os/188Os and Os concentrations and between 187Os/188Os and indices of differentiation such as MgO suggests that assimilation, rather than source variation, is responsible for the range of Os isotopic variation observed. 87Sr/86Sr, La/Sm and Sr/Th are also modified by assimilation since they all correlate with 187Os/188Os. The assimilant is inferred to have a MORB-like 87Sr/86Sr with high Sr (〉700 ppm), low light on middle and heavy rare earth elements (L/M-HREE; La/Sm ∼2.5) and 187Os/188Os 〉 0.2. Such compositional features are likely to correspond to a plagioclase-rich early-arc cumulate. Given that assimilation affects lavas that were last stored at more than 5 kbar, assimilation must occur in the middle-lower crust. Only a high MgO picrite from Grenada escaped obvious assimilation (MgO = 17% wt.%) and could reflect mantle source composition. It has a very radiogenic 87Sr/86Sr (0.705) but a 187Os/188Os ratio that overlaps the mantle range (0.127). 187Os/188Os and 87Sr/88Sr ratios of the sediments and an altered basalt from the subducting slab vary from 0.18 to 3.52 and 0.708 to 0.714. We therefore suggest that, unlike Sr, no Os from the slab was transferred to the parental magmas. Os may be either retained in the mantle wedge or even returned to the deep mantle in the subducting slab.

Description: Seismic anisotropy is common within the Earth's solid interior, in the crust, in the mantle, and in the inner core. Elastic anisotropy leads to direction-dependent wave velocities, shear-wave splitting, and polarization anomalies in both surface waves and body waves. We review the basic theory and the latest developments in modeling methods for seismic-wave propagation in anisotropic media. From mineral alignment to fine-layering effects and from mid-oceanic ridges and subduction zones to sutured continental terranes, we summarize the seismological observations that can be related to elastic anisotropy, the mechanisms proposed to explain it, and the geodynamic constraints that it offers.

Description: The geochemical composition of foraminiferal tests is a valuable archive for the reconstruction of paleo-climatic, -oceanographic and -ecological changes. However, dissolution of biogenic calcite and precipitation of inorganic calcite (overgrowth and recrystallization) at the seafloor and in the sediment column can potentially alter the original geochemical composition of the foraminiferal test, biasing any resulting paleoenvironmental reconstruction. The δ11B of planktic foraminiferal calcite is a promising ocean pH-proxy but the effect of diagenesis is still poorly known. Here we present new δ11B, δ13C, δ18O, Sr/Ca and B/Ca data from multiple species of planktic foraminifera from time-equivalent samples for two low latitude sites: clay-rich Tanzanian Drilling Project (TDP) Site 18 from the Indian Ocean containing well-preserved (‘glassy’) foraminifera and carbonate-rich Ocean Drilling Program (ODP) Site 865 from the central Pacific Ocean hosting recrystallized (‘frosty’) foraminifera. Our approach makes the assumption that environmental conditions were initially similar at both sites so most chemical differences are attributable to diagenesis. Planktic foraminiferal δ18O and δ13C records show offsets in both relative and absolute values between the two sites consistent with earlier findings that these isotopic ratios are strongly influenced by diagenetic alteration. Sr/Ca and B/Ca ratios in planktic foraminiferal calcite are also offset between the two sites but there is little change in the relative difference between surface and deep dwelling taxa. In contrast, δ11B values indicate no large differences between well-preserved and recrystallized foraminifera suggesting that despite extensive diagenetic alteration the δ11B of biogenic calcite appears robust, potentially indicative of a lack of free exchange of boron between pore fluids and the recrystallizing CaCO3. Our finding may remove one potential source of uncertainty in δ11B based pH reconstructions and provide us with greater confidence in our ability to reconstruct pH in the ancient oceans from at least some recrystallized foraminiferal calcite. However, further investigations should extend this approach to test the robustness of our findings across a range of taphonomies, ages and burial settings.

Description: The diversity of stony corals displays one of the most exemplary latitudinal gradients on the planet, yet the evolutionary dynamics that produced this pattern remains unclear. Using both paleontological and distributional data, we compare the origination, extinction and immigration levels between low and high latitudes since the earliest proliferation of the group during the mid-Triassic. Altogether, first and last occurrence localities in the fossil record do not support a positive preference towards either latitudinal bin. Nonetheless, considering past and present scleractinian fauna, the process of extinction has been apparently more pronounced at higher latitudes based on face values and correlation coefficients. Far above these differences, immigration of extant taxa has been substantially higher towards the tropics than to temperate regions. While the net dispersal toward low latitudes persists in all temporal intervals, the gradient of diversity was largely built up during the Cenozoic Era and only becomes significantly steep from the Neogene Period onwards. This dynamic supports the ‘into the tropical museum’ model, which suggests that tropics have historically acted as a center of accumulation for marine biodiversity.

Description: Climate models are potentially useful tools for addressing human dispersals and demographic change. The Arabian Peninsula is becoming increasingly significant in the story of human dispersals out of Africa during the Late Pleistocene. Although characterised largely by arid environments today, emerging climate records indicate that the peninsula was wetter many times in the past, suggesting that the region may have been inhabited considerably more than hitherto thought. Explaining the origins and spatial distribution of increased rainfall is challenging because palaeoenvironmental research in the region is in an early developmental stage. We address environmental oscillations by assembling and analysing an ensemble of five global climate models (CCSM3, COSMOS, HadCM3, KCM, and NorESM). We focus on precipitation, as the variable is key for the development of lakes, rivers and savannas. The climate models generated here were compared with published palaeoenvironmental data such as palaeolakes, speleothems and alluvial fan records as a means of validation. All five models showed, to varying degrees, that the Arabia Peninsula was significantly wetter than today during the Last Interglacial (130 ka and 126/125 ka timeslices), and that the main source of increased rainfall was from the North African summer monsoon rather than the Indian Ocean monsoon or from Mediterranean climate patterns. Where available, 104 ka (MIS 5c), 56 ka (early MIS 3) and 21 ka (LGM) timeslices showed rainfall was present but not as extensive as during the Last Interglacial. The results favour the hypothesis that humans potentially moved out of Africa and into Arabia on multiple occasions during pluvial phases of the Late Pleistocene.

Description: Carbonates are widespread at methane and petroleum seeps and are often precipitated as consequence of an alkalinity increase due to the anaerobic oxidation of methane (AOM) or, less often reported, of higher hydrocarbons. These carbonates are taphonomic windows into Earth's history, because they excellently protect the in situ formed microbial signatures (e.g. lipid biomarkers) from diagenetic destruction. A complication for paleoreconstructions, however, is that seep carbonates also encapsulate variable amounts of allochthonous organic matter, sometimes even completely obscuring authigenic microbial signatures. Seep carbonates from the Holocene Black Sea, the Pleistocene Enza River and the Pliocene San Lorenzo (both Northern Apennines, Italy) provide hints to better understand (i) the importance of processes other than AOM for the formation of seep carbonates and (ii) the controls of allochthonous and autochthonous contribution of biomarkers to organic matter in seep carbonates. Biomarker distributions in different parts of a Black Sea carbonate clearly demonstrate that high allochthonous organic matter is entrapped if AOM carbonates are formed intrasedimentary, particularly if methane supply is relatively low and external organic matter input high. High allochthonous contributions were also found in the biomarker inventory of ancient seep carbonates from the Italian Northern Apennines (Enza River and San Lorenzo) pointing at their precipitation within the sediment. Specific and complex conditions were indicated from our data for the Enza River location. Carbonate facies and particularly biomarker compositions, with abundant signatures of sulfate reducing bacteria, suggest that sulfate reduction using alkaline, and eventually sulfate- and higher hydrocarbon-enriched fluids triggered the growth of these seep carbonates. Our and other data suggest that this process has to be more considered if interpreting seep settings, particularly where microbial processes rely on rising fluids from deep petroleum reservoirs.

Description: Palaeoglaciological reconstructions of the North Sea sector of the last British Ice Sheet have, as other shelf areas, suffered from a lack of dates directly related to ice-front positions. In the present study new high-resolution TOPAS seismic data, bathymetric records and sediment core data from the Witch Ground Basin, central North Sea, were compiled. This compilation made it possible to map out three ice-marginal positions, partly through identification of terminal moraines and partly through location of glacial-fed debrisflows. The interfingering of the distal parts of the glacial-fed debrisflows with continuous marine sedimentation enabled the development of a chronology for glacial events based on previously published and some new radiocarbon dates on marine molluscs and foraminifera. From these data it is suggested that after the central Witch Ground Basin was deglaciated at c. 27 cal. ka BP, the eastern part was inundated by glacial ice from the east in the Tampen advance at c. 21 cal. ka BP. Subsequently, the basin was inundated by ice from northeast during the Fladen 1 (c. 17.5 cal. ka BP) and the Fladen 2 (16.2 cal. ka BP) events. It should be emphasized that the Fladen 1 and 2 events, individually, may represent dynamics of relatively small lobes of glacial ice at the margin of the British Ice Sheet and that the climatic significance of these may be questioned. However, the Fladen Events probably correlate in time with the Clogher Head and Killard Point re-advances previously documented from Ireland and the Bremanger event from off western Norway, suggesting that the British and Fennoscandian ice sheets both had major advances in their northwestern parts, close to the northwestern European seaboard, at this time.

Description: The Eastern Tropical South Pacific oxygen minimum zone (ETSP-OMZ) is a site of intense nitrous oxide (N2O) flux to the atmosphere. This flux results from production of N2O by nitrification and denitrification, but the contribution of the two processes is unknown. The rates of these pathways and their distributions were measured directly using 15N tracers. The highest N2O production rates occurred at the depth of peak N2O concentrations at the oxic-anoxic interface above the oxygen deficient zone (ODZ) because slightly oxygenated waters allowed (1) N2O production from both nitrification and denitrification and (2) higher nitrous oxide production yields from nitrification. Within the ODZ proper (i.e., anoxia), the only source of N2O was denitrification (i.e., nitrite and nitrate reduction), the rates of which were reflected in the abundance of nirS genes (encoding nitrite reductase). Overall, denitrification was the dominant pathway contributing the N2O production in the ETSP-OMZ.

Description: Highlights • We examine interplay between historical seismicity, mass failures and turbidites during sapropel S1 deposition; • We reconstruct chronology of earthquake triggered turbidites in the Ionian Sea during sapropel depostion; • We reconstruct the age of sapropel S1 in our core (6.0-10.2 kyr cal. BP) through Oxcal age modeling; • Turbidite emplacement time was deduced through age modeling. • We compiled a catalogue of mass flow events during several earthquake cycles. Abstract The recurrence of mass-flow units within sapropel S1, an organic carbon-rich lower Holocene marker bed in the Eastern Mediterranean Sea, was used to study the interplay between earthquakes and sedimentation along the seismically active Calabrian Arc (Ionian Sea). Nine turbidite beds interrupt anoxic conditions during the deposition of sapropel S1. Each of these turbidites is associated with sharp grain size and geochemical elemental anomalies (high Al and Si, low Ca and coarse-grained basal part marked by Zr peaks), and with displaced foraminiferal species from different bathymetric ranges. We used these proxies to identify turbidite beds also above and below the sapropel, where turbidite signature is less clear due to the absence of major color changes. Turbidite structure and composition, as well as comparison with historical seismoturbidites, suggest a seismic triggering for such mass flow events. The peculiar color, well-known composition, geochemistry and age of sapropel S1, make this unit a key bed within which turbidites may be considered a sort of sedimentary “bar code” recording high-energy events within the background pelagic sedimentation; deciphering this code will reconstruct paleo-seismicity in this well-defined stratigraphic interval. The pelagic units bracketing turbidite beds were radiometrically dated, and the age of the sapropel S1, deduced through age modeling, is between 6.0 and 10.2 kyr cal BP. The emplacement age of each turbidite was estimated considering the average time-interval between successive turbidite beds (from pelagic sediment thickness and sedimentation rate). Subsequently these ages were further refined through age modeling. In this way, we compiled a catalogue of mass flow events during sapropel S1 deposition, a time span long enough to include several earthquake cycles and allow reliable seismic and tsunami hazard assessment in this area.

Description: Performance of several library search algorithms (against EI mass spectral databases) implemented in commercial software products ( acd/specdb, chemstation, gc/ms solution and ms search) was estimated. Test set contained 1000 mass spectra, which were randomly selected from NIST'08 (RepLib) mass spectral database. It was shown that composite (also known as identity) algorithm implemented in ms search (NIST) software gives statistically the best results: the correct compound occupied the first position in the list of possible candidates in 81% of cases; the correct compound was within the list of top ten candidates in 98% of cases. It was found that use of presearch option can lead to rejection of the correct answer from the list of possible candidates (therefore presearch option should not be used, if possible). Overall performance of library search algorithms was estimated using receiver operating characteristic curves.

Description: Twenty-four strains of marine Roseobacter clade bacteria were isolated from macroalgae and investigated for the production of quorum-sensing autoinducers, N-acylhomoserine lactones (AHLs). GC/MS analysis of the extracellular metabolites allowed us to evaluate the release of other small molecules as well. Nineteen strains produced AHLs, ranging from 3-OH-C10:0-HSL (homoserine lactone) to (2E,11Z)-C18:2-HSL, but no specific phylogenetic or ecological pattern of individual AHL occurrence was observed when cluster analysis was performed. Other identified compounds included indole, tropone, methyl esters of oligomers of 3-hydroxybutyric acid, and various amides, such as N-9-hexadecenoylalanine methyl ester (9-C16:1-NAME), a structural analogue of AHLs. Several compounds were tested for their antibacterial and antialgal activity on marine isolates likely to occur in the habitat of the macroalgae. Both AHLs and 9-C16:1-NAME showed high antialgal activity against Skeletonema costatum, whereas their antibacterial activity was low.

Description: To explore the transport of carbon into water masses from the surface ocean to depths of ∼1000 m∼1000 m in the southwest Pacific Ocean, we generated time series of radiocarbon (View the MathML sourceΔC14) from fish otoliths. Otoliths (carbonate earstones) from long-lived fish provide an indirect method to examine the “bomb pulse” of radiocarbon that originated in the 1950s and 1960s, allowing identification of changes to distributions of 14C that has entered and mixed within the ocean. We micro-sampled ocean perch (Helicolenus barathri ) otoliths, collected at ∼400–500 m∼400–500 m in the Tasman Sea, to obtain measurements of View the MathML sourceΔC14 for those depths. We compared our ocean perch View the MathML sourceΔC14 series to published otolith-based marine surface water View the MathML sourceΔC14 values (Australasian snapper (Chrysophrys auratus) and nannygai (Centroberyx affinis)) and to published deep-water values (800–1000 m; orange roughy (Hoplostethus atlanticus )) from the southwest Pacific to establish a mid-water View the MathML sourceΔC14 series. The otolith bomb 14C results from these different depths were consistent with previous water mass results in the upper 1500 m of the southwest Pacific Ocean (e.g. World Ocean Circulation Experiment and Geochemical Ocean Sections Study). A comparison between the initial View the MathML sourceΔC14 bomb pulse rise at 400–500 m suggested a ventilation lag of 5 to 10 yr, whereas a comparison of the surface and depths of 800–1000 m detailed a 10 to 20 yr lag in the time history of radiocarbon invasion at this depth. Pre-bomb reservoir ages derived from otolith 14C located in Tasman Sea thermocline waters were ∼530 yr∼530 yr, while reservoir ages estimated for Tasman Antarctic intermediate water were ∼730 yr∼730 yr.

Description: The present study is focused on the examination of the state of the recently activated Santorini VolcanicComplex (SVC) area, located in the Southern Aegean Sea. The seismic activity was investigated in detailand different methodologies have been applied to examine whether the SVC area approached an eruptivephase during the 2011–2012 seismic crisis period. The detailed spatiotemporal analysis for the broaderstudy area revealed two different seismic patterns: low seismic activity until 2010, mainly concentratedwithin the Anydros basin and close to the submarine volcano, Columbo, and activation during 2011 and2012 of two previously quiescent regions. The first is the Santorini Caldera, which had been active formore than one year, and the second is the area south of Christiana Islands, which was activated in January2012 with the occurrence of two major events of magnitude 5.1 and 5.2, respectively, followed by a largenumber of aftershocks.In this study, manual analysis and relocation of the 2011–2012 seismic crisis in the SVC was performed,in order to obtain a high-resolution image of the activated structures. The seismicity within the SantoriniCaldera, which is oriented approximately NE-SW, was rapidly diminished after the activation of theChristiana area. A large number of focal mechanisms were determined which mainly indicated strike-slip faulting inside the Caldera. Furthermore, the fault plane solutions of the major events in the areasouth of Christiana, derived by waveform modeling, also suggested similar type of faulting. This typediffers from the normal faults observed in the Anydros basin. However, the stress field in all cases isconsistently oriented in a NW-SE direction. Since the Santorini Volcano was seismically activated forthe first time after the 1950 eruption, changes of the physical properties of the medium were examinedusing different approaches to assess the state of the volcano. The shear-wave splitting analysis revealedthe existence of an anisotropic upper crust, while no significant temporal variations of the anisotropydirection were observed. The majority of the recorded events were classified as volcano-tectonic micro-earthquakes using spectral analysis. Nevertheless, certain cases of spasmodic bursts and LF events, whichcan be related to magma activity, have also been identified. A region of low Vsand high Vp/Vsratio hasbeen detected north of Nea Kammeni, at depths between 3 and 5 km, that is directly associated with themagmatic chamber inside the Caldera. The applied multi-method approach revealed that the SantoriniVolcano was activated, while the obtained results indicate that the Volcano did not reach a critical stateduring the 2011–2012 unrest period.

Description: The geologic framework controls on modern barrier island transgression and the relationship of these controls to subsurface structure, hydrology and island geomorphology are not well understood. Recent evidence suggests that alongshore variations in pre-Holocene geology of barrier islands modify nearshore hydrodynamic processes and sediment transport, ultimately affecting how barrier islands will respond to relative sea-level rise. Explorations of Holocene barrier island geology are usually based on cores to supplement bathymetric, onshore/offshore seismic and/or ground-penetrating radar (GPR) surveys. The advantages and limitations of these methods with respect to barrier island investigations are briefly described in this review. Alternative near-surface geophysical methods including electromagnetic induction (EMI) sensors are increasingly being used for coastal research because they are non-invasive, provide continuous subsurface information across a variety of sub-environments, and are capable of characterizing large areas in a short time. Although these EMI sensors have shown promise in coastal applications, a number of issues primarily related to subsurface hydrology need to be addressed to fully assess the limitations of this technique. This paper reviews the theory, methodology and applications of EMI in support of geologic framework studies with particular reference to barrier islands. Resolution of these issues will allow EMI sensors to complement and offer significant advantages over traditional methods in support of an improved understanding of large-scale barrier island evolution.

Description: Fucoidan, a natural component of seaweeds, is reported to have immunomodulatory and anti-tumor effects. The mechanisms underpinning these activities remain poorly understood. In this study, the cytotoxicity and anti-tumor activities of fucoidan were investigated in acute myeloid leukemia (AML) cells. The human AML cell lines NB4, KG1a, HL60, and K562 were treated with fucoidan and cell cycle, cell proliferation, and expression of apoptotic pathways molecules were analyzed. Fucoidan suppressed the proliferation and induced apoptosis through the intrinsic and extrinsic pathways in the acute promyelocytic leukemia (APL) cell lines NB4 and HL60, but not in KG1a and K562 cells. In NB4 cells, apoptosis was caspase-dependent as it was significantly attenuated by pre-treatment with a pan-caspase inhibitor. P21/WAF1/CIP1 was significantly up-regulated leading to cell cycle arrest. Fucoidan decreased the activation of ERK1/2 and down-regulated the activation of AKT through hypo-phosphorylation of Thr(308) residue but not Ser(473). In vivo, a xenograft model using the NB4 cells was employed. Mice were fed with fucoidan and tumor growth was measured following inoculation with NB4 cells. Subsequently, splenic natural killer (NK) cell cytotoxic activity was also examined. Oral doses of fucoidan significantly delayed tumor growth in the xenograft model and increased cytolytic activity of NK cells. Taken together, these data suggest that the selective inhibitory effect of fucoidan on APL cells and its protective effect against APL development in mice warrant further investigation of fucoidan as a useful agent in treatment of certain types of leukemia.

Description: Intercellular adhesion molecule-1 (ICAM-1) is distributed and expressed on cell surface and is present in circulation as soluble form (sICAM-1). Tumor necrosis factor-alpha (TNFα) and radical oxygen species (ROS) up-regulate the expression of ICAM-1. This study demonstrates for the first time in 18 Co cells, a myofibroblast cell line derived from human colonic mucosa, an up-regulation of ICAM-1 expression and sICAM-1 release induced by oxidative stress and TNFα stimulation. The intracellular redox state was modulated by L-buthionine-S,R-sulfoximine (BSO) or N-acetylcysteine (NAC), inhibitor and precursor respectively of GSH synthesis. ROS production increases in cells treated with BSO or TNFα, and this has been related to an up-regulation of ICAM-1 expression and sICAM-1 release. The involvement of metalloproteinases in ICAM-1 release has been demonstrated. Moreover, also expression and activation of A disintegrin and metalloproteinase 17, a membrane-bound enzyme known as TNFα-converting enzyme (TACE), have been related to ROS levels. This suggests the possible involvement of TACE in the cleavage of ICAM-1 on cell surface in condition of oxidative stress. NAC down-regulates the expression and release of ICAM-1 as well as the expression and activation of TACE. However, in TNFα stimulated cells NAC treatment reduces only in part ICAM-1 expression and sICAM-1 release. Given this TNFα may also act on these events by a redox-independent mechanism.

Description: The diversity of stony corals displays one of the most exemplary latitudinal gradients on the planet, yet the evolutionary dynamics that produced this pattern remains unclear. Using both paleontological and distributional data, we compare the origination, extinction and immigration levels between low and high latitudes since the earliest proliferation of the group during the mid‐Triassic. Altogether, first and last occurrence localities in the fossil record do not support a positive preference towards either latitudinal bin. Nonetheless, considering past and present scleractinian fauna, the process of extinction has been apparently more pronounced at higher latitudes based on face values and correlation coefficients. Far above these differences, immigration of extant taxa has been substantially higher towards the tropics than to temperate regions. While the net dispersal toward low latitudes persists in all temporal intervals, the gradient of diversity was largely built up during the Cenozoic Era and only becomes significantly steep from the Neogene Period onwards. This dynamic supports the ‘into the tropical museum’ model, which suggests that tropics have historically acted as a center of accumulation for marine biodiversity.

Description: This study investigated the effects of diet supplementation with poly-β-hydroxybutyrate (PHB) on growth performance, digestive enzyme activity, lipid metabolism, mineral uptake and bacterial challenge of the rainbow trout fry (initial weight: 111.3 ± 13.7 mg) during a 6-week experimental period. In the experimental set-up, the commercial diet of rainbow trout fry was replaced with 0.5%, 1% and 2% PHB. The results of our work showed that the replacing of diets with PHB in experimental treatments decreases the weight of rainbow trout fry during the first 2 weeks before significantly increasing final weight at the end of the 6-week period. PHB also improved digestive enzyme activity in experimental treatments. The highest total protease, pepsin activity and pancreatic enzyme secretion were observed with the 0.5% PHB treatment. A higher concentration of Na and K was observed in the whole body of the fry fed on 1% and 2% PHB-supplemented diets. Enhanced survival rates occurred in all groups of fry after bath exposure to Yersinia ruckeri compared to rates in those fed the control diet. Our results suggest that the diet supplemented with PHB may improve growth performance, digestive enzyme activity and the functioning of the immune system. These positive effects could be considered for new applications in aquaculture.

Description: A new algorithmto retrieve characteristics (albedo and melt pond fraction) of summer ice in the Arctic fromoptical satellite data is described. In contrast to other algorithms this algorithm does not use a priori values of the spectral albedo of the sea-ice constituents (such asmelt ponds,white ice etc.). Instead, it is based on an analytical solution for the reflection from sea ice surface. The algorithm includes the correction of the sought-for ice and ponds characteristics with the iterative procedure based on the Newton–Raphson method. Also, it accounts for the bi-directional reflection from the ice/snow surface, which is particularly important for Arctic regions where the sun is low. The algorithm includes an original procedure for the atmospheric correction, as well. This algorithm is implemented as computer code called Melt Pond Detector (MPD). The input to the current version of the MPD algorithm is the MERIS Level 1B data, including the radiance coefficients at ten wavelengths and the solar and observation angles (zenith and azimuth). Also, specific parameters describing surface and atmospheric state can be set in a configuration input file. The software output is the map of the melt ponds area fraction and the spectral albedo of sea-ice in HDF5 format. The numerical verification shows that theMPD algorithm provides more accurate results for the light ponds than for the dark ones. The spectral albedo is retrieved with high accuracy for any type of ice and ponds.

Description: Highlights • Experimental stable isotope study on trophic plasticity in adult Macoma balthica. • Contrasts in isotope signatures attributed to hydrographical and biotic settings. • Changing signatures in transplanted clams show switch in feeding in new environment. Abstract Species show varying levels of plasticity regarding morphology, physiology and behaviour in relation to their immediate environment, and several trait characteristics are habitat-dependent. Determining when and how the environmental context changes trait expression is of key importance for understanding the role of individual species for ecosystem functioning. The tellinid clam Macoma balthica can vary its feeding behaviour, shifting between deposit- and suspension-feeding. In order to study the context-dependency of this trophic plasticity in adult clams, we conducted an experiment assessing food uptake by using stable isotope signatures (δ13C and δ15N). We transplanted individuals between and within two shallow bays differing in exposure (exposed–sheltered) and sediment characteristics. Our results show that isotope signatures of clams differed between the two habitats and that clams in the exposed site showed stable isotope values linked to a diet of suspended particulate organic material, while values of individuals in the sheltered site corresponded to an uptake of sediment-bound organic material. Clams transplanted between these two environmental settings were gradually showing differing isotopic signatures from clams at their original habitat, over time mirroring the changes in clams in the site to which they were transferred. The shift in carbon and nitrogen stable isotopes of the clams provides insights into the context-dependent intraspecific feeding plasticity of this zoobenthic key species. The causes for this shift were coupled to contrasts in the hydrodynamic and biotic setting, implying that feeding plasticity may explain adaptation of organisms to changes in their surroundings.

Description: Glycogen synthase kinase 3 (GSK-3) was first discovered in 1980 as one of the key enzymes of glycogen metabolism. Since then, GSK-3 has been revealed as one of the master regulators of a diverse range of signaling pathways, including those activated by Wnts, participating in the regulation of numerous cellular functions, suggesting that its activity is tightly regulated. Numerous studies have pointed to an association of GSK-3 dysregulation with the onset and progression of human diseases, including diabetes mellitus, obesity, inflammation, neurological illnesses, and cancer. Therefore, GSK-3 is recognized as an attractive therapeutic target in multiple disorders. However, the great number of substrates that are phosphorylated by GSK-3 has raised the question of whether this limits its feasibility as a therapeutic target because of the potential disruption of many cellular processes and also by the fear that inhibition of GSK-3 may stimulate or aid in malignant transformation, as GSK-3 can phosphorylate pro-oncogenic factors. This mini review focuses on the role played by GSK-3 in Wnt signaling pathway and cancer using as model colon cancer.

Description: Low seawater pH can be harmful to many calcifying marine organisms, but the calcifying macroalgae Padina spp. flourish at natural submarine carbon dioxide seeps where seawater pH is low. We show that the microenvironment created by the rolled thallus margin of Padina australis facilitates supersaturation of CaCO3 and calcifi-cation via photosynthesis-induced elevated pH. Using microsensors to investigate oxygen and pH dynamics in the microenvironment of P. australis at a shallow CO2 seep, we found that, under saturating light, the pH inside the microenvironment (pHME) was higher than the external seawater (pHSW) at all pHSW levels investigated, and the difference (i.e., pHME − pHSW) increased with decreasing pHSW (0.9 units at pHSW 7.0). Gross photosynthesis (Pg) inside the microenvironment increased with decreasing pHSW, but algae from the control site reached a threshold at pH 6.5. Seep algae showed no pH threshold with respect to Pg within the pHSW range investigated. The external carbonic anhydrase (CA) inhibitor, acetazolamide, strongly inhibited Pg of P. australis at pHSW 8.2, but the effect was diminished under low pHSW (6.4–7.5), suggesting a greater dependence on membrane-bound CA for the dehydration of HCO3− ions during dissolved inorganic carbon uptake at the higher pHSW. In comparison, a calcifying green alga, Halimeda cuneata f. digitata, was not inhibited by AZ, suggesting efficient bicarbonate transport. The ability of P. australis to elevate pHME at the site of calcification and its strong dependence on CA may explain why it can thrive at low pHSW.

Description: Top-down trophic cascades are well known in many autotrophic systems, yet their role in heterotrophic food webs is less clear. We collated data from 78 investigations and applied meta-analysis to evaluate the strength of detrital trophic cascades in freshwater and terrestrial food webs. Predators exerted significant, indirect controls on detrital resources, in line with theoretical predictions, whereas this was not the case for omnivores, suggesting that detritivory prevailed over predation and disrupted trophic cascades. Significant relationships were observed for both types of consumer in terms of their responses to detrital quality: specifically, unimodal curves across C:N and N:P gradients were the best fits for predators, whilst cascade strength responses to detrital quality were saddle shaped. These insights suggest that while predatory strategy is determining cascades within detrital-based systems, resource quality has bottom-up role effects on predators and on preferential consumption by omnivores. As such, these environmental responses seem to mirror some provisioning and supporting services; our findings are discussed within conceptual frameworks related to ecological stoichiometry and ecosystem services.

Description: Natural CO2 venting systems can mimic conditions that resemble intermediate to high pCO2 levels as predicted for our future oceans. They represent ideal sites to investigate potential long-term effects of ocean acidification on marine life. To test whether microbes are affected by prolonged exposure to pCO2 levels, we examined the composition and diversity of microbial communities in oxic sandy sediments along a natural CO2 gradient. Increasing pCO2 was accompanied by higher bacterial richness and by a strong increase in rare members in both bacterial and archaeal communities. Microbial communities from sites with CO2 concentrations close to today's conditions had different structures than those of sites with elevated CO2 levels. We also observed increasing sequence abundance of several organic matter degrading types of Flavobacteriaceae and Rhodobacteraceae, which paralleled concurrent shifts in benthic cover and enhanced primary productivity. With increasing pCO2, sequences related to bacterial nitrifying organisms such as Nitrosococcus and Nitrospirales decreased, and sequences affiliated to the archaeal ammonia-oxidizing Thaumarchaeota Nitrosopumilus maritimus increased. Our study suggests that microbial community structure and diversity, and likely key ecosystem functions, may be altered in coastal sediments by long-term CO2 exposure to levels predicted for the end of the century.

Description: Highlights: • Reduced taxon-richness (96%, 151–6 taxa) leads to overall reduction in function. • Functional richness remained high (66% of tot.) even at the lowest taxon richness. • Analysis of changes in trait categories showed the importance of multifunctionality. • Number of taxa per trait category gives complementary information to the FD index. • Rare species did not express unique traits. Abstract: Alterations to ecosystem function due to reductions in species richness are predicted to increase as humans continue to affect the marine environment, especially in coastal areas, which serve as the interface between land and sea. The potential functional consequences due to reductions in species diversity have attracted considerable attention recently but little is known about the consequence of such loss in natural communities. We examined how the potential for function is affected by natural reductions in taxon richness using empirical (non-simulated) coastal marine benthic macrofaunal data from the Skagerrak-Baltic Sea region (N. Europe), where taxon richness decreases 25-fold, from 151 to 6 taxa. To estimate functional changes we defined multiple traits (10 traits and 51 categories) on which trait category richness, functional diversity (FD) and number of taxa per trait category were calculated. Our results show that decrease in taxon richness leads to an overall reduction in function but functional richness remains comparatively high even at the lowest level of taxon richness. Although the taxonomic reduction was sharp, up to 96% of total taxon richness, we identified both potential thresholds in functioning and subtler changes where function was maintained along the gradient. The functional changes were not only caused by reductions in taxa per trait category, some categories were maintained or even increased. Primarily, the reduction in species richness altered trait categories related to feeding, living and movement and thus potentially could have an effect on various ecosystem processes. This highlights the importance of recognising ecosystem multifunctionality, especially at low taxonomic richness. We also found that in this system rare species (singletons) did not stand for the functional complexities and changes. Our findings were consistent with theoretical and experimental predictions and suggest that a large proportion of the information about alterations of function is found in measures such as functional diversity and number of taxa per trait category.

Description: By molecular analysis of a high number of gammarids, including 29 out-group genera, we could assure the monophyly of Gammaridae. To avoid the paraphyly of the family, we propose the omission of Pontogammaridae, Typhlogammaridae, and all Baikalian families. Similarly, the genera Fontogammarus, Sinogammarus, Lagunogammarus, Pephredo, Neogammarus, and Laurogammarus may be cancelled. But, tens of Baikal genera, nested within Gammarus, are so diverse that they must be retained, although rendering Gammarus paraphyletic. Besides we propose the polyphyletic Echinogammarus–Chaetogammarus group to be divided into monophyletic genera Echinogammarus s. str., Homoeogammarus, Parhomoeogammarus, Marinogammarus, Relictogammarus gen. nov., Chaetogammarus, and Trichogammarus gen. nov. These solutions made it possible to complete the first analysis of the family evolution in light of its phylogeny. Perimarine clades are mainly basally split clades, whereas in some ancient lakes extremely rich endemic faunas had developed polyphyletically. The troglobiotic Typhlogammarus group from Dinarides and Caucasus formed a monophylum, whereas the troglobiotic assemblage of Gammarus species is highly polyphyletic. Reduction of the uropod III endopodite, which classically distinguishes between the genera Gammarus and Echinogammarus, appeared to be highly polyphyletic. Protective dorsal pleonal projections occur scattered across the family and beyond, whereas lateral projections were limited to species of ancient lakes, so both structures were polyphyletic. The evolutionary history of Gammaridae was investigated with ten different calibration schemes, which produced incompatible results; however, the most probable scenario is a late rise of the family, which can only explain the absence of Gammaridae species around the Indo-Pacific.

Description: The Ionian and Gavrovo Zones in the external Hellenide fold-and-thrust belt of western Greece are a southern extension of the proven Albanian oil and gas province. Two petroleum systems have been identified here: a Mesozoic mainly oil-prone system, and a Cenozoic system with gas potential. Potential Mesozoic source rocks include organic-rich shales within Triassic evaporites and dissolution-collapse breccias; marls at the base of the Early Jurassic (lower Toarcian) Ammonitico Rosso; the Lower and Upper Posidonia beds (Toarcian–Aalenian and Callovian–Tithonian respectively); and the Late Cretaceous (Cenomanian–Turonian) Vigla Shales, part of the Vigla Limestone Formation. These potential source rocks contain Types I-II kerogen and are mature for oil generation if sufficiently deeply buried. The Vigla Shales have TOC up to 2.5% and good to excellent hydrocarbon generation potential with kerogen Type II. Potential Cenozoic gas-prone source rocks with Type III kerogen comprise organic-rich intervals in Eocene–Oligocene and Aquitanian–Burdigalian submarine fan deposits, which may generate biogenic gas. The complex regional deformation history of the external Hellenide foldbelt, with periods of both crustal extension and shortening, has resulted in the development of structural traps. Mesozoic extensional structures have been overprinted by later Hellenide thrusts, and favourable trap locations may occur along thrust back-limbs and in the crests of anticlines. Trapping geometries may also be provided by lateral discontinuities in the basal detachment in the thin-skinned fold-and-thrust belt, or associated with strike-slip fault zones. Regional-scale seals are provided by Triassic evaporites, and Eocene-Oligocene and Neogene shales. Onshore oil- and gasfields in Albania are located in the Peri-Adriatic Depression and Ionian Zone. Numerous oil seeps have been recorded in the Kruja Zone but no commercial hydrocarbon accumulations. Source rocks in the Ionian Zone comprise Upper Triassic – Lower Jurassic carbonates and shales of Middle Jurassic, Late Jurassic and Early Cretaceous ages. Reservoir rocks in both oil- and gas-fields in general consist of silicilastics in the Peri-Adriatic Depression succession and the underlying Cretaceous–Eocene carbonates with minimal primary porosity improved by fracturing in the Albanian Ionian Zone. Oil accumulations in thrust-related structures are sealed by the overlying Oligocene flysch whereas seals for gas accumulations are provided by Upper Miocene–Pliocene shales. Thin-kinned thrusting along flysch décollements, resulting in stacked carbonate sequences, has clearly been demonstrated on seismic profiles and in well data, possibly enhanced by evaporitic horizons. Offshore Albania in the South Adriatic basin, exploration targets in the SW include possible compressional structures and topographic highs proximal to the relatively unstructured boundary of the Apulian platform. Further to the north, there is potential for oil accumulations both in the overpressured siliciclastic section and in the underlying deeply buried platform carbonates. Biogenic gas potential is related to structures in the overpressured Neogene (Miocene–Pliocene) succession.

Description: This paper reports a physicochemical study (thermodynamic and kinetic data) describing the ability of Rubus ulmifolius biomass (dead leaves) for metal uptake. The toxicity of aluminum is a major problem for crops in acidic soils and therefore, aluminum has been selected. The results obtained indicate that dead R. ulmifolius leaves uptake up to 10000mg/kg on its surface in less than 60min. This suggests that R. ulmifolius can be an excellent component with adsorbent properties for aquatic environments and in particular for amendments to be used in acidic soils in order to control aluminum levels, thus its toxicity. The results obtained have been critically analyzed and compared with literature on aluminum bioaccumulation. The application of a pseudo-second order kinetic equation, not previously used in toxicity studies, is discussed. Moreover, a good linear correlation between stability constants for Al3+ complexes with several defined ligands and the Langmuir affinity constants obtained from the corresponding adsorption isotherm has been found. Therefore, in addition to its ethno-botanical relevance, applications of R. ulmifolius as a detoxifier for aluminum in a simulated acidic gastrointestinal fluid, as phytostabilization agent in amendments or in natural attenuation cycles or as biomass for wastewater treatment containing aluminum, are suggested.

Description: Highlights: • Rheological evolution of the rock is influenced by its original and evolving structure. • Strain localizes at boundary between domains of different assemblages (qtz-, fsp-rich). • Strain localizes in original and recrystallized/precipitated finer-grained phases. • Formation of interconnected meso- and microshear zones deformed by diffusion creep. • The rheology of studied example is controlled by Newtonian flow. Abstract: Deformation microstructures of a quartzo-feldspathic pegmatite deformed at mid-crustal levels allow the study of the dynamics of strain localization in polymineralic rocks. Strain localization results from (i) difference in grain sizes between phases, both original and obtained during fluid present reactions and (ii) initial compositional banding. Due to original difference in grain size stress concentrates in the initially finer-grained phases resulting in their intense grain size reduction via subgrain rotation recrystallization (SGR). When the grain size is sufficiently reduced through either deformation or interphase coupled dissolution–precipitation replacement of the coarse grained feldspar, aggregates start to deform by dominantly diffusion accommodated grain boundary sliding (GBS). Phase mixing inhibits grain growth and sustains a grain size allowing GBS. Consequently, discontinuous microscale shear zones form locally within initially coarse grained areas. At the same time difference in strain rate between feldspar-rich and quartz-rich domains needs to be accommodated at domain boundaries. This results in the formation of continuous mesoscale shear zones deformed by GBS. Once these are formed, deformation in the coarse grained parts is arrested and strain is mainly accommodated in the mesoscale shear zones resulting in “superplastic” behaviour consistent with diffusion creep.

Description: 1) With ambitious renewable energy targets, pile driving associated with offshore wind farm construction will become widespread in the marine environment. Many proposed wind farms overlap with the distribution of seals, and sound from pile driving has the potential to cause auditory damage. 2) We report on a behavioural study during the construction of a wind farm using data from GPS/GSM tags on 24 harbour seals Phoca vitulina L. Pile driving data and acoustic propagation models, together with seal movement and dive data, allowed the prediction of auditory damage in each seal. 3) Growth and recovery functions for auditory damage were combined to predict temporary auditory threshold shifts in each seal. Further, M-weighted cumulative sound exposure levels [cSELs(Mpw)] were calculated and compared to permanent auditory threshold shift exposure criteria for pinnipeds in water exposed to pulsed sounds. 4) The closest distance of each seal to pile driving varied from 4·7 to 40·5 km, and predicted maximum cSELs(Mpw) ranged from 170·7 to 195·3 dB re 1μPa2-s for individual seals. Comparison to exposure criteria suggests that half of the seals exceeded estimated permanent auditory damage thresholds. 5) Prediction of auditory damage in marine mammals is a rapidly evolving field and has a number of key uncertainties associated with it. These include how sound propagates in shallow water environments and the effects of pulsed sounds on seal hearing; as such, our predictions should be viewed in this context. 6) Policy implications. We predicted that half of the tagged seals received sound levels from pile driving that exceeded auditory damage thresholds for pinnipeds. These results have implications for offshore industry and will be important for policymakers developing guidance for pile driving. Developing engineering solutions to reduce sound levels at source or methods to deter animals from damage risk zones, or changing temporal patterns of piling could potentially reduce auditory damage risk. Future work should focus on validating these predictions by collecting auditory threshold information pre- and post-exposure to pile driving. Ultimately, information on population-level impacts of exposure to pile driving is required to ensure that offshore industry is developed in an environmentally sustainable manner.

Description: Highlights: • β-glucan induces apoptosis in a time and concentration dependent manner. • ≥500 μg/ml induce apoptosis in pronephric cells in vitro. • Apoptosis is observed after 6 h of incubation. In previous studies an effect of β-glucan on apoptosis in fish was noted and in this investigation we determine the time and concentration dependency of this effect. Primary cell cultures of pronephric carp cells were incubated for 6, 24, 48 h with various concentrations ranging from 0 - 1000 μg/ml of MacroGard® β-glucan. Apoptosis was monitored via acridine orange staining. Results indicate a clear effect of time and concentration on the induction of apoptosis in vitro, with only concentration ≥ 500 μg/ml causing significantly higher percentages of apoptotic cells. Apoptosis was detected after 6 h. This concentration dependent effect has to be considered when studying apoptosis in relation to immunostimulation.

Description: Highlights: • Elemental C:N:P variations of organic matter are simulated at monitoring site BY15. • No N2 fixation needed to explain observed PO4PO4 and pCO2pCO2 levels after spring bloom. • Model features relevance of DOP production and remineralization for N2 fixation. • Model estimates of annual N2 fixation are View the MathML source297±24mmolNm-2a-1. • Model estimates of annual total production are View the MathML source14.16±0.71molCm-2a-1. Abstract: For most marine ecosystems the growth of diazotrophic cyanobacteria and the associated amount of nitrogen fixation are regulated by the availability of phosphorus. The intensity of summer blooms of nitrogen (N2) fixing algae in the Baltic Sea is assumed to be determinable from a surplus of dissolved inorganic phosphorus (DIP) that remains after the spring bloom has ended. But this surplus DIP concentration is observed to continuously decrease at times when no appreciable nitrogen fixation is measured. This peculiarity is currently discussed and has afforded different model interpretations for the Baltic Sea. In our study we propose a dynamical model solution that explains these observations with variations of the elemental carbon-to-nitrogen-to-phosphorus (C:N:P) ratio during distinct periods of organic matter production and remineralization. The biogeochemical model resolves seasonal C, N and P fluxes with depth at the Baltic Sea monitoring site BY15, based on three assumptions: (1) DIP is utilized by algae though not needed for immediate growth, (2) the uptake of dissolved inorganic nitrogen (DIN) is hampered when the algae׳s phosphorus (P) quota is low, and (3) carbon assimilation continues at times of nutrient depletion. Model results describe observed temporal variations of DIN, DIP and chlorophyll-a concentrations along with partial pressure of carbon dioxide (pCO2)(pCO2). In contrast to other model studies, our solution does not require N2 fixation to occur shortly after the spring bloom to explain DIP drawdown and pCO2pCO2 levels. Model estimates of annual N2 fixation are View the MathML source297±24mmolNm-2a-1. Estimates of total production are View the MathML source14200±700mmolCm-2a-1, View the MathML source1400±70mmolNm-2a-1, and View the MathML source114±5mmolPm-2a-1 for the upper 50 m. The models C, N and P fluxes disclose preferential remineralization of P and of organic N that was introduced via N2 fixation. Our results are in support of the idea that P uptake by phytoplankton during the spring bloom contributes to the consecutive availability of labile dissolved organic phosphorus (LDOP). The LDOP is retained within upper layers and its remineralization affects algal growth in summer, during periods of noticeable N2 fixation.

Description: Whilst Herpesviridae, which infect higher vertebrates, actively influence host immune responses to ensure viral replication, it is mostly unknown if Alloherpesviridae, which infect lower vertebrates, possess similar abilities. An important antiviral response is clearance of infected cells via apoptosis, which in mammals influences the outcome of infection. Here, we utilise common carp infected with CyHV-3 to determine the effect on the expression of genes encoding apoptosis-related proteins (p53, Caspase 9, Apaf-1, IAP, iNOS) in the pronephros, spleen and gills. The influence of CyHV-3 on CCB cells was also studied and compared to SVCV (a rhabdovirus) which induces apoptosis in carp cell lines. Although CyHV-3 induced iNOS expression in vivo, significant induction of the genetic apoptosis pathway was only seen in the pronephros. In vitro CyHV-3 did not induce apoptosis or apoptosis-related expression whilst SVCV did stimulate apoptosis. This suggests that CyHV-3 possesses mechanisms similar to herpesviruses of higher vertebrates to inhibit the antiviral apoptotic process.

Description: An integral concept of ecological research is the constraint of biodiversity along latitudinal and environmental gradients. The Red Sea features a natural example of a latitudinal gradient of salinity, temperature and nutrient richness. Coral reefs along the Red Sea coasts are supported with allochthonous resources such as oceanic and neritic phytoplankton and zooplankton; however, relatively little is known about how the ecohydrography correlates with plankton biodiversity and abundance. In this article we present the biodiversity of phytoplankton and zooplankton in Red Sea coral reefs. Oceanographic data (temperature, salinity), water samples for nutrient analysis, particulate organic matter, phytoplankton and zooplankton, the latter with special reference to Copepoda (Crustacea), were collected at nine coral reefs over ~1500 km distance along the Red Sea coast of Saudi Arabia. The trophic state of ambient waters [as indicated by chlorophyll a (Chl a)] changed from strong oligotrophy in the north to mesotrophy in the south and was associated with increasing biomasses of Bacillariophyceae, picoeukaryotes and Synechococcus as indicated by pigment fingerprinting (CHEMTAX) and flow cytometry. Net-phytoplankton microscopy revealed a Trichodesmium erythraeum (Cyanobacteria) bloom north of the Farasan Islands. Several potentially harmful algae, including Dinophysis miles and Gonyaulax spinifera (Dinophyceae), were encountered in larger numbers in the vicinity of the aquaculture facilities at Al Lith. Changes in zooplankton abundance were mainly correlated to the phytoplankton biomass following the latitudinal gradient. The largest zooplankton abundance was observed at the Farasan Archipelago, despite high abundances of copepodites, veligers (Gastropoda larvae) and Chaetognatha at Al Lith. Although the community composition changed over latitude, biodiversity indices of phytoplankton and zooplankton did not exhibit a systematic pattern. As this study constitutes the first current account of the plankton biodiversity in Red Sea coral reefs at a large spatial scale, the results will be informative for ecosystem-based management along the coastline of Saudi Arabia.

Description: Highlights: • Different disturbance–diversity relationships in phytoplankton are still unresolved. • We modelled phytoplankton under different types of disturbance. • Diversity is increased by disturbance in comparison with a chemostat. • The disturbance–diversity relationship depends on the type of disturbance. • Disturbance increases the timescale of competitive exclusion. Abstract: The way in which disturbance shapes phytoplankton diversity is still subject to much debate. Various disturbance–diversity relationships have been proposed, with diversity increasing or decreasing with the intensity or frequency of disturbance, or peaking at intermediate levels. A key problem in this discussion is the use of different concepts of “disturbance”, which can encompass both positive and negative effects on phytoplankton. To investigate how different modes of disturbance affect phytoplankton diversity, we subject populations of modelled phytoplankton to different frequencies and intensities of three different disturbance modes: a positive, a negative and a combined positive and negative disturbance mode. A chemostat system, considered undisturbed, is used for comparison. We show that (1) disturbance increases phytoplankton coexistence, (2) the disturbance–diversity relationship depends on the type of disturbance and (3) the effect is transient and disturbances predominantly affect the timescale of competitive exclusion.

Description: The recrystallisation (dissolution–precipitation) of carbonate sediments has been successfully modelled to explain profiles of pore water Sr concentration and radiogenic Sr isotope composition at different locations of the global ocean. However, there have been few systematic studies trying to better understand the relative importance of factors influencing the variability of carbonate recrystallisation. Here we present results from a multi-component study of recrystallisation in sediments from the Integrated Ocean Drilling Program (IODP) Expedition 320/321 Pacific Equatorial Age Transect (PEAT), where sediments of similar initial composition have been subjected to different diagenetic histories. The PEAT sites investigated exhibit variable pore water Sr concentrations gradients with the largest gradients in the youngest sites. Radiogenic Sr isotopes suggest recrystallisation was relative rapid, consistent with modelling of other sediment columns, as the 87Sr/86Sr ratios are indistinguishable (within 2σ uncertainties) from contemporaneous seawater 87Sr/86Sr ratios. Bulk carbonate leachates and associated pore waters of Site U1336 have lower 87Sr/86Sr ratios than contemporaneous seawater in sediments older than 20.2 Ma most likely resulting from the upward diffusion of Sr from older recrystallised carbonates. It seems that recrystallisation at Site U1336 may still be on-going at depths below 102.5 rmcd (revised metres composite depth) suggesting a late phase of recrystallisation. Furthermore, the lower Sr/Ca ratios of bulk carbonates of Site U1336 compared to the other PEAT sites suggest more extensive diagenetic alteration as less Sr is incorporated into secondary calcite. Compared to the other PEAT sites, U1336 has an inferred greater thermal gradient and a higher carbonate content. The enhanced thermal gradient seems to have made these sediments more reactive and enhanced recrystallisation. In this study we investigate stable Sr isotopes from carbonate-rich deep sea sediments for the first time. Pore water δ88/86Sr increases with depth (from 0.428‰ to values reaching up to 0.700‰) at Site U1336 documenting an isotope fractionation process during recrystallisation. Secondary calcite preferentially incorporates the lighter Sr isotope (86Sr) leaving pore waters isotopically heavy. The δ88/86Sr values of the carbonates themselves show more uniform values with no detectable change with depth. Carbonates have a much higher Sr content and total Sr inventory than the pore waters meaning pore waters are much more sensitive to fractionation processes than the carbonates. The δ88/86Sr results indicate that pore water stable Sr isotopes have the potential to indicate the recrystallisation of carbonate sediments.

Description: The southern part of the Baltic Shield hosts a series of mafic dykes and sills of Mesoproterozoic ages, including a ca. 1.53–1.46 Ga sheet-like gabbro-dolerite sills and the Salmi plateau-basalts from the Lake Ladoga region. Based on chiefly geochemical data, the region is conventionally interpreted as an intracratonic Ladoga rift (graben). We question the validity of this geodynamic interpretation by analyzing regional geophysical data (crustal structure, heat flow, Bouguer gravity anomalies, magnetic anomalies, and mantle Vs velocities). We provide a complete list of tectonic, magmatic, and geophysical characteristics typical of continental rifts in general and demonstrate that, except for magmatic and, perhaps, some gravity signature, the Lake Ladoga region lacks any other rift features. We also compare the geophysical data from the Lake Ladoga region with similar in age Midcontinent and Valday rifts, and provide alternative explanations for Mesoproterozoic geodynamic evolution of the southern Baltic Shield. We propose that Mesoproterozoic mafic intrusions in southern Fennoscandia may be associated with a complex deformation pattern during reconfiguration of (a part of) Nuna (Columbia) supercontinent, which led to magma intrusions as a series of mafic dykes along lithosphere weakness zones and ponding of small magma pockets within the cratonic lithosphere. Consequent magma cooling and its partial transition to eclogite facies could have led to the formation of a series of basement depressions, similar to intracratonic basins of North America, while spatially heterogeneous thermo-chemical subsidence, with phase transitions locally speeded by the presence of (subduction-related) fluids, could have produced a series of faults bounding graben-like structures.

Description: Some populations of brown seaweed species inhabit metal-polluted environments and can develop tolerance to metal stress, but the mechanisms by which this is accomplished are still to be elucidated. To address this, the responses of two strains of the model brown alga Ectocarpus siliculosus isolated from sites with different histories of metal contamination exposed to total copper (CuT) concentrations ranging between 0 and 2.4 μM for 10 days were investigated. The synthesis of the metal-chelator phytochelatin (PCs) and relative levels of transcripts encoding the enzymes γ-glutamylcysteine synthetase (γ-GCS), glutathione synthase (GS) and phytochelatin synthase (PCS) that participate in the PC biosynthetic pathway were measured, along with the effects on growth, and adsorption and uptake of Cu. Growth of strain LIA, from a pristine site in Scotland, was inhibited to a greater extent, and at lower concentrations, than that of Es524, isolated from a Cu-contaminated site in Chile. Concentrations of intra-cellular Cu were higher and the exchangeable fraction was lower in LIA than Es524, especially at the highest exposure levels. Total glutathione concentrations increased in both strains with Cu exposure, whereas total PCs levels were higher in Es524 than LIA; PC2 and PC3 were detected in Es524 but PC2 only was found in LIA. The greater production and levels of polymerisation of PCs in Es524 can be explained by the up-regulation of genes encoding for key enzymes involved in the synthesis of PCs. In Es524 there was an increase in the transcripts of γ-GCS, GS and PCS, particularly under high Cu exposure, whereas in LIA4 transcripts of γ-GCS1 increased only slightly, γ-GCS2 and GS decreased and PCS did not change. The consequences of higher intra-cellular concentrations of Cu, lower production of PCs, and lower expression of enzymes involved in GSH-PCs synthesis may be contributing to an induced oxidative stress condition in LIA, which explains, at least in part, the observed sensitivity of LIA to Cu. Therefore, responses to Cu exposure in E. siliculosus relate to the contamination histories of the locations from where the strains were isolated and differences in Cu exclusion and PCs production are in part responsible for the development of intra-specific resistance.

Description: VALUE is an open European network to validate and compare downscaling methods for climate change research. VALUE aims to foster collaboration and knowledge exchange between climatologists, impact modellers, statisticians, and stakeholders to establish an interdisciplinary downscaling community. A key deliverable of VALUE is the development of a systematic validation framework to enable the assessment and comparison of both dynamical and statistical downscaling methods. In this paper, we present the key ingredients of this framework. VALUE's main approach to validation is user- focused: starting from a specific user problem, a validation tree guides the selection of relevant validation indices and performance measures. Several experiments have been designed to isolate specific points in the downscaling procedure where problems may occur: what is the isolated downscaling skill? How do statistical and dynamical methods compare? How do methods perform at different spatial scales? Do methods fail in representing regional climate change? How is the overall representation of regional climate, including errors inherited from global climate models? The framework will be the basis for a comprehensive community-open downscaling intercomparison study, but is intended also to provide general guidance for other validation studies.

Description: IODP Expedition 340 successfully drilled a series of sites offshore Montserrat, Martinique and Dominica in the Lesser Antilles from March to April 2012. These are among the few drill sites gathered around volcanic islands, and the first scientific drilling of large and likely tsunamigenic volcanic island-arc landslide deposits. These cores provide evidence and tests of previous hypotheses for the composition and origin of those deposits. Sites U1394, U1399, and U1400 that penetrated landslide deposits recovered exclusively seafloor-sediment, comprising mainly turbidites and hemipelagic deposits, and lacked debris avalanche deposits. This supports the concepts that i/ volcanic debris avalanches tend to stop at the slope break, and ii/ widespread and voluminous failures of pre-existing low-gradient seafloor sediment can be triggered by initial emplacement of material from the volcano. Offshore Martinique (U1399 and 1400), the landslide deposits comprised blocks of parallel strata that were tilted or micro-faulted, sometimes separated by intervals of homogenized sediment (intense shearing), while Site U1394 offshore Montserrat penetrated a flat-lying block of intact strata. The most likely mechanism for generating these large-scale seafloor-sediment failures appears to be propagation of a decollement from proximal areas loaded and incised by a volcanic debris avalanche. These results have implications for the magnitude of tsunami generation. Under some conditions, volcanic island landslide deposits comprised of mainly seafloor sediment will tend to form smaller magnitude tsunamis than equivalent volumes of subaerial block-rich mass flows rapidly entering water. Expedition 340 also successfully drilled sites to access the undisturbed record of eruption fallout layers intercalated with marine sediment which provide an outstanding high-resolution dataset to analyze eruption and landslides cycles, improve understanding of magmatic evolution as well as offshore sedimentation processes. This article is protected by copyright. All rights reserved.

Description: The iron hypothesis suggests that in large areas of the ocean phytoplankton growth and thus photosynthetic CO2-uptake is limited by the micronutrient iron. Phytoplankton requires iron in particular for nitrate uptake, light harvesting and electron transport in photosynthesis, suggesting a tight coupling of iron and light limitation. One important source of iron to the open ocean is dust deposition. Previous global biogeochemical modeling studies have suggested a low sensitivity of oceanic CO2-uptake to changes in dust deposition. Here we show that this sensitivity is increased significantly when iron-light colimitation, i.e. the impact of iron bioavailability on light harvesting capabilities, is explicitly considered. Accounting for iron-light colimitation increases the shift of export production from tropical and subtropical regions to the higher latitudes of subpolar regions at high dust deposition and amplifies iron limitation at low dust deposition. Our results re-emphasize the role of iron as a key limiting nutrient for phytoplankton.

Description: Highlights: • Abyssal AUV-based microstructure measurements over rough topography. • Indications for hydraulic control downstream of a sill in a Mid-Atlantic Ridge valley. • Asymmetric distribution of dissipation rate and elevated density variability. Abstract: Diapycnal mixing in the deep ocean is known to be much stronger in the vicinity of rough topography of mid-ocean ridges than above abyssal plains. In this study a horizontally profiling microstructure probe attached to an autonomous underwater vehicle (AUV) is used to infer the spatial distribution of the dissipation rate of turbulent kinetic energy (ε ) in the central valley of the Mid-Atlantic Ridge. To the authors’ knowledge, this is the first successful realization of a horizontal, deep-ocean microstructure survey. More than 22 h of horizontal, near-bottom microstructure data from the Lucky Strike segment (37 °N) are presented. The study focuses on a channel with unidirectional sill overflow. Density was found to decrease along the channel following the mean northward flow of 3 to 8 cm/s. The magnitude of the rate of turbulent kinetic energy dissipation was distributed asymmetrically relative to the position of the sill. Elevated dissipation rates were present in a segment 1-4 km downstream (north) of the sill with peak values of 1⋅10−71⋅10−7 W/kg. Large flow speeds and elevated density finestructure were observed within this segment. Lowered hydrographic measurements indicated unstable stratification in the same region. The data indicate that hydraulic control is established at least temporarily. Inside the channel at wavelengths between 1 m and 250 m the slopes of AUV-inferred horizontal temperature gradient spectra were found to be consistent with turbulence in the inertial-convective subrange. Integrated temperature gradient variance in this wavelength interval is consistent with an ε2/3 dependence. The results illustrate that deep-reaching AUVs are a useful tool to study deep ocean turbulence over complex terrain where free-falling and lowered turbulence measurements are inefficient and time-consuming.

Description: On average, 10.52% of the total population was found to fish for recreation across the industrialised world (N = 27 countries), amounting to an estimated 118 million (95% confidence interval 81–154 million) people in North America, Europe and Oceania. Participation rates declined with population density and gross domestic product, indicating a negative effect of urbanisation and post-modernisation on fishing interest. Participation rates also declined with increasing median age, average household size and unemployment rate, suggesting resource limitation to constrain participation in fishing. By contrast, two indicators of the cultural importance of fish (fish landings and per capita fish consumption) and an indicator of perceived need for leisure (weekly working hours) were positively correlated with fishing participation. Based on these findings, which explained 60% of the variance in fishing participation across the industrialised world, reduced fishing interest is to be expected with post-industrialisation. Dedicated management and marketing intervention is needed to reverse the track of diminishing fishing interest in industrialised countries.

Description: Abyssal macrofaunal composition of 21 epibenthic sledge hauls from twelve stations taken in the Kuril–Kamchatka Trench (KKT) and at the adjacent abyssal plain, Northwest Pacific, is presented. Sampling with the fine meshed epibenthic sledge yielded higher abundances and species richness than was reported from previous expeditions from board of RV Vityaz. In total 84,651 invertebrates were sampled with RV Sonne between July and September of 2012 (31,854 invertebrates if standardised for 1000 m2 trawled distances) from 41 taxa of different taxonomic ranks (15 phyla, 28 classes, 7 orders) were sampled from a trawled area of 53,708 m² and have been analyzed. Few taxa were frequent and most taxa were rare in the samples, twelve taxa occurred with more than 1% frequency. Of these, the Polychaeta were most abundant followed by the benthic Copepoda and Isopoda. Total numbers of individuals varied between stations and were highest with 4238 individuals at station 2-10 close to the KKT in 4865 m depth and lowest with 374 individuals at station 6-11 in 5305 m depth. At this station also the lowest number of taxa occurred (18 taxa) while the highest number occurred with 31 taxa at station 3-9 in 4991 m depth. Numbers of individuals decreased with increasing depth between 4830 and 5780 m. Crustaceans of the superorder Peracarida were one of the dominating taxa with four orders occurring frequently in most samples. In total, Isopoda were most important and occurred with 59% of all peracarid orders sampled, followed by Amphipoda with 21%, Tanaidacea with 11%, Cumacea with 9%, and Mysidacea with 〈1%. The communities of the stations (and hauls) of the KKT abyssal area differ in terms of taxon composition from each other. A cluster analysis (nMDS) performed for all sampled stations revealed no clear pattern of community similarity between stations or hauls. All hauls close to the trench (2-9 and 2-10 close to the eastern slope of the KKT; and 3-9 and 4-3 at the western slope) were most different to the other hauls. Hauls 8-9 and 8-12 as well as 5-10 and 7-10 in the approximate centre of the overall research area were most similar (88% similarity). The non-isolated KKT area is characterized by higher abundances and higher benthic species richness than the geographically isolated and young deep-sea basin of the Sea of Japan.

Description: The isopod family Munnopsidae Lilljeborg, 1864 was the most diverse and species richest family among all macrobenthic organisms collected during the expedition KuramBio in the abyssal area off the Kuril–Kamchatka Trench (R.V. Sonne, 2012). The munnopsid genus Microcope Malyutina, 2008, represented by two species, was one of the most abundant and frequent isopod genera sampled at all stations. Microcope ovata ( Birstein, 1970), the only known Pacific species of Microcope to date, is redescribed based on the new collections, since the types of the species were lost. Descriptions of a new species from the KuramBio samples, Microcope stenopigussp. nov. and a new species from the opposite side of Pacific Ocean, from the southeastern Australian slope, Microcope justisp. nov., are presented herein. These findings increase the number of described species of Microcope to five and extended the geography of the genus from the previously known South Atlantic, Antarctic and the northwestern Pacific to the new localities from the southwestern Pacific. The depth range for the genus was also extended from 2014–7370 m, to 427–7370 m. A map of the distribution of the genus Microcope and a key to the described species of Microcope are provided.

Description: During the German–Russian expedition KuramBio (Kuril–Kamchatka Biodiversity Studies) from board of the RV Sonne to the Kuril–Kamchatka Trench and adjacent abyssal plain, benthic samples were taken by means of a camera-epibenthic sledge. Amongst one of the most diverse macrobenthic taxa, the Isopoda (Crustacea, Malacostraca), Ischnomesidae were the fifth most abundant isopod family in the Kuril–Kamchatka area and were sampled with 24 species from 5 genera in 21 hauls at 12 stations. Fortimesus occurs most frequently in the samples (36% of all Ischnomesidae sampled), followed by Stylomesus (26%), Heteromesus (23%), Ischnomesus (10%) and Gracilimesus (4%). Number of ischnomesid individuals is highest at station 10-12 with 35 specimens, followed by station 12-4 (30 ind.), station 6-12 (29 ind.), station 9-9 (28), and station 1-11 (24). At station 4-3 only 1 specimen was found. A key to all genera of Ischnomesidae is provided. Two new species from two genera: Stylomesus Wolff, 1956 and Fortimesus Kavanagh and Wilson, 2007 are described from the KuramBio material. Stylomesus malyutinae sp. nov. is distinguished by the smooth body surface, the shape of pleotelson and the length of uropods from other species of the genus from the Northwest Pacific Ocean. Fortimesus trispiculum sp. nov. is characterised by anterolateral projections of pereonites 1–3 which are forming an angle of about 45° with the longitudinal body axis decreasing in length from anterior to posterior.

Description: Individual wood fragments obtained from Agassiz trawl samples in the abyssal plain area off the Kuril–Kamchatka Trench were analysed for faunistic components. Out of seven pieces of wood collected, only five harboured fauna and each showed distinctively different colonization patterns. In total, 257 specimens, mainly belonging to the phyla Arthropoda, Nematoda, Mollusca and Annelida, were collected from the available pieces of wood. While wood-boring bivalves of the genus Xylophaga, generally seen as opportunists among wood-converting organisms, were present at nearly all stations, the overwhelming majority of taxa found were restricted to individual pieces of wood. A fresh piece of wood from a site opposite to the Tsugaru Strait, was the most heavily colonized. The presence of shallow or even putative fresh-water taxa beside truly deep-water components possibly suggests a recent sinking of that particular wood fragment and demonstrates the role of such ephemeral organic objects in deep-sea ecosystems as energy-rich feeding grounds and potential distributional stepping stones. Detailed studies of driftwood communities on single sunken wood fragments from deep oceans are limited. The present data not only demonstrate a tolerance of some taxa to changes in physical parameters, such as hydrostatic pressure, salinity and temperature, but also indicate a higher biodiversity on fresher wood pieces compared to wood which already underwent decomposition processes. It is, however, not clear whether the species diversity was linked to the type of wood, since exhaustive analyses on the wood pieces themselves were not conducted.

Description: During the German–Russian expedition KuramBio (Kuril–Kamchatka Biodiversity Studies) to the northwest Pacific Kuril–Kamchatka Trench and its adjacent abyssal plain, we found several kinds and sizes of plastic debris ranging from fishing nets and packaging to microplastic in the sediment of the deep-sea floor. Microplastics were ubiquitous in the smaller fractions of the box corer samples from every station from depths between 4869 and 5766 m. They were found on the abyssal plain and in the sediments of the trench slope on both sides. The amount of microplastics differed between the stations, with lowest concentration of 60 pieces per m2 and highest concentrations of more than 2000 pieces per m2. Around 75% of the microplastics (defined here as particles 〈1 mm) we isolated from the sediment samples were fibers. Other particles were paint chips or small cracked pieces of unknown origin. The Kuril–Kamchatka Trench area is known for its very rich marine fauna (Zenkevich, 1963). Yet we can only guess how these microplastics accumulated in the deep sea of the Kuril-Kamchatka Trench area and what consequences the microplastic itself and its adsorbed chemicals will have on this very special and rich deep-sea fauna. But we herewith present an evaluation of the different kinds of plastic debris we found, as a documentation of human impact into the deep sea of this region of the Northwest Pacific.

Description: During the German–Russian KuramBio (Kuril–Kamchatka Biodiversity Studies) expedition with the RV Sonne from July to September 2012, a 0.25 m2 box corer was used to sample the benthic fauna of the Kuril–Kamchatka area. 23 cores were deployed at 12 stations, and in total 36,648 individuals could be identified from a combined surface area of 5.75 m2. Total faunal densities ranged from 1024 to 16,592 ind. m−2, respectively, for the macrofauna from 436 to 3520 ind. m−2. The fauna was dominated by Nematoda (65%), even though this group and other meiofaunal taxa were only partially retained by the 300 µm screen that was used as the smallest screen for this study. The remaining part of the fauna was dominated by polychaetes (23%), followed by peracarid crustaceans (6%) and molluscs (3%). Most of the collected taxa occurred very patchily. Over 80% of the animals were extracted from the upper 2 centimeters of the sediment. Compared to other regions of the Pacific the density of the benthic fauna was unusually high. At the upper slope of the continental margin of the trench and at the southern part of the area the benthic fauna was most taxon rich. Station 3 from the continental slope of the trench was also most rich in terms of faunal density (total numbers of ind. m−2), followed by the station 11 and 12 from that the southernmost part of the abyss. Although the Kuril–Kamchatka area has been sampled on several expeditions during the last century, and some studies on the biomass of the benthic fauna have been published, this study offers the first quantitative community analysis of the benthic fauna in terms of abundance and taxon richness.

Description: A long-standing problem in climate modeling is the inaccurate simulation of tropical Atlantic (TA) sea surface temperature (SST), known as the TA SST bias. It has far-reaching consequences for climate prediction in that area as it goes along, among others, with erroneous precipitation patterns. We show that the TA SST bias can be largely reduced by increasing both the atmospheric horizontal and vertical resolution in a climate model. At high horizontal resolution, enhanced vertical resolution is indispensable to substantially improve the simulation of TA SST by enhancing surface wind stress. This also reduces biases in the upper ocean thermal structure and precipitation patterns. Although, enhanced horizontal resolution alone leads to some improvement in the mean climate, typical bias patterns characterized by a reversed zonal SST gradient at the equator and too warm SST in the Benguela upwelling region are mostly unchanged at a coarser vertical resolution.

Description: Seagrass meadows are a crucial component of tropical marine reef ecosystems. Seagrass plants are colonized by a multitude of epiphytic organisms that contribute to broadening the ecological role of seagrasses. To better understand how environmental changes like ocean acidification might affect epiphytic assemblages, the microbial community composition of the epiphytic biofilm of Enhalus acroides was investigated at a natural CO2 vent in Papua New Guinea using molecular fingerprinting and next generation sequencing of 16S and 18S rRNA genes. Both bacterial and eukaryotic epiphytes formed distinct communities at the CO2-impacted site compared to the control site. This site-related CO2 effect was also visible in the succession pattern of microbial epiphytes. We further found an increased abundance of bacterial types associated with coral diseases at the CO2-impacted site (Fusobacteria, Thalassomonas) whereas eukaryotes such as certain crustose coralline algae commonly related to healthy reefs were less diverse. These trends in the epiphytic community of E. acroides suggest a potential role of seagrasses as vectors of coral pathogens and may support previous predictions of a decrease in reef health and prevalence of diseases under future ocean acidification scenarios.

Description: Highlights: • Distinct rare earth element profiles across southern boundary of Antarctic Circumpolar Current • Low particle concentrations and strong vertical exchange cause homogenous vertical profiles • Pronounced deepwater Ce anomalies reflect isolation from new continental sources to seawater The concentrations of rare earth elements (REEs) in seawater display systematic variations related to weathering inputs, particle scavenging and water mass histories. Here we investigate the REE concentrations of water column profiles in the Atlantic sector of the Southern Ocean, a key region of the global circulation and primary production. The data reveal a pronounced contrast between the vertical profiles in the Antarctic Circumpolar Current (ACC) and those to the south of the ACC in the Weddell Gyre (WG). The ACC profiles exhibit the typical increase of REE concentrations with water depth and a change in the shape of the profiles from near linear for the light REEs to more convex for the heavy REEs. In contrast, the WG profiles exhibit high REE concentrations throughout the water column with only the near surface samples showing slightly reduced concentrations indicative of particle scavenging. Seawater normalised REE patterns reveal the strong remineralisation signal in the ACC with the light REEs preferentially removed in surface waters and the mirror image pattern of their preferential release in deep waters. In the WG the patterns are relatively homogenous reflecting the prevalence of well-mixed Lower Circumpolar Deep Water (LCDW) that follows shoaling isopycnals in the region. In the WG particle scavenging of REEs is comparatively small and limited to the summer months by light limitation and winter sea ice cover. Considering the surface water depletion compared to LCDW and that the surface waters of the WG are replaced every few years, the removal rate is estimated to be on the order of 1 nmol m- 3 yr- 1 for La and Nd. The negative cerium anomalies observed in deep waters are some of the strongest found globally with only the deepest waters in parts of the Pacific having stronger anomalies. These deep waters have been isolated from fresh continental REE inputs during their long journey through the abyssal Indo-Pacific ocean and suggests that the high REE concentrations found in the ACC and WG reflect contributions from old deep waters.

Description: Since the inception of the international GEOTRACES program, studies investigating the distribution of trace elements and their isotopes in the global ocean have significantly increased. In spite of this large-scale effort, the distribution of neodymium isotopes (143Nd/144Nd, εNd) and concentrations ([Nd]) in the high latitude South Pacific is still understudied, specifically north of the Antarctic Polar Front (APF). Here we report dissolved Nd isotopes and concentrations from 11 vertical water column profiles from the South Pacific between South America and New Zealand and across the Antarctic frontal system. Results confirm that Ross Sea Bottom Water (RSBW) is represented by an εNdvalue of ∼−7, and for the first time show that these Nd characteristics can be traced into the Southeast Pacific until progressive mixing with ambient Lower Circumpolar Deep Water (LCDW) dilutes this signal north of the APF. That is, εNdbehaves conservatively in RSBW, opening a path for studies of past RSBW behavior. Neodymium concentrations show low surface concentrations and a linear increase with depth north of the APF. South of the APF, surface [Nd] is high and increases with depth but remains almost constant below ∼1000m. This vertical and spatial [Nd] pattern follows the southward shoaling density surfaces of the Southern Ocean and hence suggests supply of Nd to the upper ocean through upwelling of Nd-rich deep water. Low particle abundance due to reduced opal production and seasonal sea ice cover likely contributes to the maintenance of the high upper ocean [Nd] south of the APF. This suggests a dominant lateral transport component on [Nd] and a reduced vertical control on Nd concentrations in the South Pacific south of the APF.

Description: Quantifying biotic feedbacks in response to environmental signals is fundamental to assess ecosystem perturbation. We analyzed the joint effects of eutrophication, derived from sewage pollution, and climate at the base of the pelagic food web in the Bahía Blanca Estuary (SW Atlantic Ocean). A two-year survey of environmental conditions and microplankton communities was conducted in two sites affected by contrasting anthropogenic eutrophication conditions. Under severe eutrophication, we found higher phytoplankton abundance consistently dominated by smaller sized, non siliceous species, while microzooplankton abundance remained lower and nutrient stoichiometry showed conspicuous deviations from the Redfield ratio. Phytoplankton growth in such conditions appeared controlled by phosphorous. In turn, microplankton biomass and phytoplankton size ratio (〈20. μm:〉20. μm) displayed a saturation relationship with nutrients in the highly eutrophic area, although mean phytoplankton growth was similar in both eutrophic systems. The strength of links within the estuarine network, quantified through path analysis, showed enhanced relationships under larger anthropogenic eutrophication, which fostered the climate influence on microplankton communities. Our results show conspicuous effects of severe sewage pollution on the ecological stoichiometry, i.e., N and P excess with respect to Si, altering nutrient ratios for microplankton communities. This warns on wide consequences on food web dynamics and ultimately in ecosystem assets of coastal pelagic environments.

Description: The Late Quaternary variability of the South Asian (or Indian) monsoon has been linked with glacial-interglacial and millennial scale climatic changes but past rainfall intensity in the river catchments draining into the Andaman Sea remains poorly constrained. Here we use radiogenic Sr, Nd, and Pb isotope compositions of the detrital clay-size fraction and clay mineral assemblages obtained from sediment core NGHP Site 17 in the Andaman Sea to reconstruct the variability of the South Asian monsoon during the past 60 kyr. Over this time interval eNd values changed little, generally oscillating between 27.3 and 25.3 and the Pb isotope signatures are essentially invariable, which is in contrast to a record located further northeast in the Andaman Sea. This indicates that the source of the detrital clays did not change significantly during the last glacial and deglaciation suggesting the monsoon was spatially stable. The most likely source region is the Irrawaddy river catchment including the Indo-Burman Ranges with a possible minor contribution from the Andaman Islands. High smectite/(illite1chlorite) ratios (up to 14), as well as low 87Sr/86Sr ratios (0.711) for the Holocene period indicate enhanced chemical weathering and a stronger South Asian monsoon compared to marine oxygen isotope stages 2 and 3. Short, smectite-poor intervals exhibit markedly radiogenic Sr isotope compositions and document weakening of the South Asian monsoon, which may have been linked to short-term northern Atlantic climate variability on millennial time scales.

Description: During the KuramBio expedition, the abyssal plain adjacent to the Kuril–Kamchatka Trench was sampled in July–August 2012. More than 5200 individuals of Polychaeta belonging to 38 families, 108 genera and about 144 species were found. Six genera have been reported for the Northwest Pacific for the first time. About 50% of the collected polychaete species are considered as new to science. One of these, Sphaerephesia lesliae sp. n., is described herein. The detailed description of the new species is presented and its differences from similar species are shown. This eighth species of the genus is characterized by the presence of macrotubercles with two paired terminal papillae. The genus Sphaerephesia Fauchald, 1972 is newly recorded in the Northwest Pacific. An updated key to the species of the genus Sphaerephesia is provided.

Description: Highlights: • Sensitivities of annual carbon (C), nitrogen (N) and phosphorus (P) flux estimates to parameter variations are determined. • Model parameters that specify annual inventories are compared with those that determine timing and magnitude of bloom events. • Seven model parameters are of primary importance, affecting C, N and P budgets simultaneously. • Nine parameters have negligible effects on annual budget estimates and on seasonal trajectories. • Parameter categorization provides important prior information for parameter optimization in the central Baltic Sea. Abstract: This study describes a sensitivity analysis that allows the parameters of a one-dimensional ecosystem model to be ranked according to their specificity in determining biochemical key fluxes. Key fluxes of interest are annual (a) total production (TP), (b) remineralization above the halocline (RM), and (c) export at 50 m (EX) at the Baltic Sea monitoring site BY15 located in the Gotland Deep basin. The model resolves mass flux of carbon (C), nitrogen (N), and phosphorous (P), while considering nitrogen fixation explicitly. Our first null hypothesis is that the variation of the value of every single model parameter affects each annual C, N, and P budget simultaneously. Our second null hypothesis states that the variation of every parameter value induces changes at least in either of the annual C, N or P budgets. Our analyses falsify both null hypotheses and reveal that 8 out of 36 parameters must be regarded redundant, as their variation neither alter annual key fluxes nor produce considerable time-shifts in model trajectories at the respective site. Seven parameters were found to induce substantial changes in annual C, N, and P flux estimates simultaneously. The assimilation efficiency of zooplankton turned out to be of vital importance. This parameter discriminates between the assimilation and destruction of algal prey during grazing. The fraction of unassimilated dead algal cells is critical for the amount of organic matter exported out of the euphotic zone. The maximum cellular N:C quota of diazotrophs and the degradation/hydrolysis rate of detrital carbon are two parameters that will likely remain unconstrained by time series data, but both affect the annual C budget considerably. Overall, our detailed specification of model sensitivities to parameter variations will facilitate the formulation of a well-posed inverse problem for the estimation of C, N and P fluxes from stock observations at the Gotland Deep.

Description: Denmark Strait Overflow Water (DSOW) supplies the densest contribution to North Atlantic Deep Water and is monitored at several locations in the subpolar North Atlantic. Hydrographic (temperature and salinity) and velocity time series from three multiple-mooring arrays at the Denmark Strait sill, at 180 km downstream (south of Dohrn Bank) and at a further 320 km downstream on the east Greenland continental slope near Tasiilaq (formerly Angmagssalik), were analyzed to quantify the variability and track anomalies in DSOW in the period 2007-2012. No long-term trends were detected in the time series, while variability on time scales from interannual to weekly was present at all moorings. The hydrographic time series from different moorings within each mooring array showed coherent signals, while the velocity fluctuations were only weakly correlated. Lagged correlations of anomalies between the arrays revealed a propagation from the sill of Denmark Strait to the Angmagssalik array in potential temperature with an average propagation time of 13 days, while the correlations in salinity were low. Entrainment of warm and saline Atlantic Water and fresher water from the East Greenland Current (via the East Greenland Spill Jet) can explain the whole range of hydrographic changes in the DSOW measured downstream of the sill. Changes in the entrained water masses and in the mixing ratio can thus strongly influence the salinity variability of DSOW. Fresh anomalies found in downstream measurements of DSOW within the Deep Western Boundary Current can therefore not be attributed to Arctic climate variability in a straightforward way

Description: Highlights: • Coagulation efficiency of the coccolithophorid Emiliania huxleyi was determined with Couette flow devices. • Higher coagulation efficiencies of cells were observed at lower growth rates. • Coagulation efficiency increases with the extracellular polysaccharides fraction. Abstract: Coagulation of small particles results in the formation of larger aggregates that play an important role in the biological pump, moving carbon and other elements from the surface to the deep ocean and seafloor. In this study, we estimated the efficiency of particle coagulation of the coccolithophore Emiliania huxleyi at different growth rates using Couette flow devices at a natural shear rate. To determine the impacts of chemical and biological factors involved in aggregate formation, we investigated how variance in organic matter composition, and in particular the presence of extracellular polysaccharides (EP), including transparent exopolymer particles (TEP) and acidic polysaccharides attached to the coccolith surface, affect the coagulation efficiency (α). When E. huxleyi was grown in a chemostat at different growth rates, coagulation efficiency increased from ~ 0.40 to 1 as cell growth rates declined and nutrients became more limited. With declining growth rate the concentration of EP and the number of detached coccoliths increased. Overall a close correlation between coagulation efficiency of E. huxleyi and the ratio of EP to total particle volume was observed. The minimum value of α of ~ 0.4 determined during this study is higher than estimates published for other phytoplankton cells, and may be related to the presence of EP attached to coccoliths. Based on our findings, we suggest that E. huxleyi is more prone to form aggregates, particularly during the decline of blooms, when increased production of EP and enhanced shedding of coccoliths coincide. This may be one explanation for why blooms of E. huxleyi play an important role in the biological carbon pump, efficiently enhancing the vertical flux of particles, as has been suggested by sediment trap studies.

Description: Highlights: • TEPs and CSPs showed different production patterns and particle-association behaviors. • TEPs and CSPs had different vertical distributions in the Sargasso Sea. • CSP as well as TEP gels are linked by cation bridging. • FlowCAM can be used for in-situ visualization and imaging of TEPs and CSPs in parallel-stained samples. • In-situ visualization of TEPs and CSPs led to new insights about particle interaction and their role in aggregation. Abstract: The discovery of ubiquitous, abundant and transparent gel-like particles, such as the polysaccharide-containing transparent exopolymer particles (TEP) and protein-containing Coomassie stainable particles (CSP) has changed our conception of particle–organism interaction and created new questions about the origin, composition, and role of these particles in aquatic systems. Using both standard and novel staining methods, we studied these gel-like particles to determine whether CSP and TEP are sub-units of the same particle, are distinct particles with different characteristics and behaviors, or are both. Our seawater mesocosm results show that phytoplankton produce both TEP and CSP; however, their highest abundances occur at differences phases in the phytoplankton bloom. We developed a new technique for visualizing stained transparent material in unfiltered aqueous samples with the FlowCAM; this technique allows in-situ visualization and imaging of TEP and CSP in parallel stained samples. Visual examination of stained and unstained TEP and CSP from seawater microcosms, marine algal cultures, and freshwater showed that TEP and CSP have different shape, size and particle-association behavior. In a diatom-dominated microcosm, TEP concentrations were higher than CSP concentrations and unlike CSP, TEP were usually associated with diatom cells or aggregates. The cyanobacteria culture, however, showed higher CSP than TEP concentrations and aggregates of those cells appeared to be CSP-rich. Vertical and seasonal distributions of TEP and CSP in the Sargasso Sea were different. Even though both types of particles were most abundant in the upper 100 m of the water column, CSP closely followed fluorescence and total particle concentration, while the highest TEP concentration was always in the shallowest sample collected. Thus, we conclude that TEP and CSP are different particles, produced by different species at different growth phases and rates. They have different roles and are affected by different processes according to the community composition and environmental conditions.

Description: Highlights: • The distribution of particulate matter was studied using Argo float measurements. • Its spatio-temporal properties were analyzed in the eastern tropical North Atlantic. • Surface, subsurface, intermediate and bottom nepheloid layers were considered. • High correlations between particulate matter and phytoplankton were verified. • The depth of subsurface particle maxima correlated to the distance to shore. Abstract: The spatial and temporal distribution of particulate matter in the water column of the eastern tropical North Atlantic between 16.9–22.9°N and 16.6–29.3°W was investigated using optical measurements from transmissometers mounted on Argo floats. The corresponding profiles of beam attenuation coefficients measured from February 2008 to May 2009 were used to study particulate matter in different layers such as the surface nepheloid layer (SNL), subsurface nepheloid layer (SSNL), intermediate nepheloid layer (INL) and bottom nepheloid layer (BNL) as well as to investigate sinking particles (SP). The SNL were down to about 60 m water depth at thicknesses between 20 and 60 m. Our analyses verified high correlation between particulate matter and phytoplankton in the SNL. High offshore SNL extension of up to 750 km was found in the area of Cape Blanc filaments in January 2009. Their typical widths ranged from 11 to 72 km. Furthermore, float-borne observations even resolved atmospheric dust deposition into the surface water layer during a strong Saharan dust event in October 2008. The observed dust concentration in the mixed water layer was found to vary between 0.0021 and 0.0168 g m−3 depending on applied assumptions. An abrupt change from a SNL to a SSNL regime over distances of only 80 to 90 km was observed. The particulate matter in the SSNL showed lateral extensions from 420 to 1020 km offshore. A statistically significant correlation between the depth of subsurface particle maxima and the distance to shore was found. An averaged diameter of 30 km was determined for the sharply isolated patches of INL which was consistent with model simulations of other studies. The lateral transport of particulate matter in these INL features in the area of the giant Cape Blanc filaments was found to be more pronounced than reported in earlier studies. The distribution of particulate matter within the INL filaments reached up to 610 km off the shelf edge. The frequency of INL decreased with increasing distance to shore. The sinking velocity of particulate matter of one long-term observed INL was approximately 1.3 m day−1. Highly concentrated BNLs with beam attenuation coefficients of up to 4.530 m−1 were observed in the continental slope region. INLs appeared more frequently than SP events which lead to the conclusion that the lateral transport of particulate matter in INL features in the study area was more important than their passive vertical sinking.

Description: Highlights • Magmatic chlorine-excess is a highly sensitive tracer of hydrothermal contamination. • Red Sea magmas show Cl-excess more extreme than even fast spreading ridges. • High-Cl Red Sea environment produces high-Cl hydrothermally altered crust and magmatic Cl-excess. • (Ultra)slow-spreading ridge magmas can assimilate hydrothermally altered crust. • Magmatic Cl-excess can guide hydrothermal prospection in the Red Sea. Abstract Newly formed oceanic crust is initially cooled by circulating seawater, although where this occurs and over what regions fluids enter the crust is still unclear. Differences in the chlorine (Cl) concentrations between mid-ocean ridge basalt and seawater potentially make Cl a sensitive tracer for this hydrothermal circulation, allowing assimilation of hydrothermal fluids or hydrothermally altered crust by rising magma to be traced by measuring excess Cl in erupted lavas. Such excess Cl has been found in basalts from fast-spreading ridges (Cl concentrations up to 1200 ppm), but not so far on ultraslow- and slow-spreading ridges, where lower Cl values in the basalts (~ 50–200 ppm) make variations harder to measure. The Red Sea, with its relatively saline bottom water (40–42‰, cf. 35‰ salinity in open ocean water), the presence of axial brine pools (up to 270‰ salinity) and thick evaporite sequences flanking the young rift provides an ideal opportunity to study the incorporation of hydrothermal Cl at an ultraslow- to slow-spreading ridge (max. 1.6 cm/yr). Both absolute Cl concentrations (up to 1300 ppm) and ratios of Cl to elements of similar mantle incompatibility (e.g. K, Nb) are much higher in Red Sea basalts than for average ultraslow- and slow-spreading ridges. An origin of these Cl-excesses by seafloor weathering or syn-eruptive contamination can be excluded, as can mineral/melt fractionation during melting or crystallisation, based on trace element data. Instead, the incorporation of Cl at depth derived from hydrothermal circulation either by direct assimilation of hydrothermal fluids or through mixing of magma with partial melts of the hydrothermally altered crust is indicated. We see no influence of local spreading rate, the intensity of seafloor fracturing or the calculated depth of last crystal fractionation on Cl-excess. Seafloor areas with clear evidence of present or recent hydrothermal activity (brine pool temperatures above ambient, presence of hydrothermal sediments) always show Cl-excess in the local basalts and there is a positive correlation between Cl-excess and intensity of local volcanism (as determined by the percentage of local seafloor showing volcanic bathymetric forms). From this we conclude that Cl-excess in basalts is related to high crustal temperatures and hydrothermal circulation and so can be used to prospect for active or recently extinct hydrothermal systems. Samples recovered within 5 km of a seafloor evaporite outcrop show particularly high Cl-excesses, suggesting addition of Cl from the evaporites to the inflow fluids and that this may be the length scale over which hydrothermal recharge occurs.

Description: Highlights • Calcification rates are stimulated by CO2 and HCO3− and inhibited by H+. • This novel substrate–inhibitor concept is tested with experimental data. • The concept enables us to reconcile conflicting results among laboratory studies. • We illustrate how this physiological concept can be included in ecological theory. • We apply the concept to discuss coccolithophore dispersal in the oceans. Abstract Coccolithophores are a group of unicellular phytoplankton species whose ability to calcify has a profound influence on biogeochemical element cycling. Calcification rates are controlled by a large variety of biotic and abiotic factors. Among these factors, carbonate chemistry has gained considerable attention during the last years as coccolithophores have been identified to be particularly sensitive to ocean acidification. Despite intense research in this area, a general concept harmonizing the numerous and sometimes (seemingly) contradictory responses of coccolithophores to changing carbonate chemistry is still lacking to date. Here, we present the “substrate–inhibitor concept” which describes the dependence of calcification rates on carbonate chemistry speciation. It is based on observations that calcification rate scales positively with bicarbonate (HCO3−), the primary substrate for calcification, and carbon dioxide (CO2), which can limit cell growth, whereas it is inhibited by protons (H+). This concept was implemented in a model equation, tested against experimental data, and then applied to understand and reconcile the diverging responses of coccolithophorid calcification rates to ocean acidification obtained in culture experiments. Furthermore, we (i) discuss how other important calcification-influencing factors (e.g. temperature and light) could be implemented in our concept and (ii) embed it in Hutchinson’s niche theory, thereby providing a framework for how carbonate chemistry-induced changes in calcification rates could be linked with changing coccolithophore abundance in the oceans. Our results suggest that the projected increase of H+ in the near future (next couple of thousand years), paralleled by only a minor increase of inorganic carbon substrate, could impede calcification rates if coccolithophores are unable to fully adapt. However, if calcium carbonate (CaCO3) sediment dissolution and terrestrial weathering begin to increase the oceans’ HCO3− and decrease its H+ concentrations in the far future (10–100 kyears), coccolithophores could find themselves in carbonate chemistry conditions which may be more favorable for calcification than they were before the Anthropocene.

Description: An empirical function is derived for predicting the rate-depth profile of particulate organic carbon (POC) degradation in surface marine sediments including the bioturbated layer. The rate takes the form of a power law analogous to the Middelburg function. The functional parameters were optimized by simulating measured benthic O2 and NO3− fluxes at 185 stations worldwide using a diagenetic model. The novelty of this work rests with the finding that the vertically-resolved POC degradation rate in the bioturbated zone can be determined using a simple function where the POC rain rate is the governing variable. Although imperfect, the model is able to fit 71 % of paired O2 and NO3− fluxes to within 50% of measured values. It further provides realistic geochemical concentration-depth profiles, NO3− penetration depths and apparent first-order POC mineralization rate constants. The model performs less well on the continental shelf due to the high heterogeneity there. When applied to globally resolved maps of rain rate, the model predicts a global denitrification rate of 182 ± 88 Tg yr−1 of N and a POC burial rate of 107 ± 52 Tg yr−1 of C with a mean carbon burial efficiency of 6.1%. These results are in very good agreement with published values. Our proposed function is conceptually simple, requires less parameterization than multi-G type models and is suitable for non-steady state applications. It provides a basis for more accurately simulating benthic nutrient fluxes and carbonate dissolution rates in Earth system models.

Description: Highlights • Aerosol time-series measurements on the Cape Verde reveal seasonal variations • High aerosol loadings in winter at Cape Verde related to dust transport in trade winds • Dust supply during summer originating mainly from the Sahel region • Dust supply during winter originating mainly from the North and West Saharan region • Clay dominant mineral in aerosols over Cape Verde, influencing iron solubility Abstract The North Atlantic receives the largest dust loading of any of the world’s oceans due to its proximity to North African deserts and prevailing wind patterns. The supply of biologically important trace elements and nutrients via aerosols has an important influence on biogeochemical processes and ecosystems in this ocean region. In this study we continuously sampled aerosols between July 2007 and July 2008 at the Cape Verde Atmospheric Observatory (CVAO), which is situated on an island group close to the North African continent and under the Saharan/Sahelian dust outflow path. The aim of our work was to investigate temporal variations in aerosol concentration, composition and sources in the Cape Verde region over a complete seasonal cycle, and for this purpose we undertook mineralogical and chemical (42 elements) analyses of the aerosol samples and air mass back-trajectory calculations. Aerosol samples were also collected during a research cruise in the (sub-) tropical Northeast Atlantic Ocean in January 2008. The concentration of atmospheric Al, a proxy for mineral aerosol concentration, at CVAO was in the range 0.01 – 66.9 μg.m- 3 (maximum on 28-30 January 2008) with a geometric mean of 0.76 μg.m- 3. It showed distinct seasonal variations, with enhanced Al concentrations in winter (geometric mean 1.3 μg.m- 3), and lower concentrations in summer (geometric mean 0.48 μg.m- 3). These observations have been attributed to dust transport occurring in higher altitude air layers and mainly north of the Cape Verde during summer, whilst in winter the dust transport shifts south and occurs in the lower altitude trade winds with consequent greater influence on the Cape Verde region. The elemental composition of the aerosols closely agreed with mean upper crustal abundances, with the exception of elements with pronounced anthropogenic sources (e.g. Zn and Pb) and major constituents of sea water (Na and Mg). Mineral analysis showed that clays were the most abundant mineral fraction throughout the whole sampling period, with an increase in quartz and clays during strong dust events and an associated decrease in calcite. This could have important implications for the estimation of release of for example Fe from mineral dust with clays having a higher Fe solubility than quartz. The elemental composition and mineralogy of aerosol samples collected during the cruise were indistinguishable from those collected at the CVAO during the same period, although mean atmospheric Al was 65% higher at the CVAO than those measured on the ship due to the irregular and uneven nature of dust transport. Air mass back-trajectories showed an important role for southern source regions of the North African deserts during summer, with 92.5% of the samples indicating a contribution from the Sahel. Significantly elevated ratios of V, Ni, Cu, Zn, Cd and Pb with Al were present in samples originating from the Sahel compared with samples with a more northerly origin. This was likely due to enhanced anthropogenic emissions related to the greater population densities in the Sahel compared with the less developed Saharan regions further north. Ratios of other elements and trends in rare earth elements could however not be used to distinguish differences in source regions. Similar source material compositions, the mixing of dust from different regions during transport, and the pooling of samples over a 1-3 day collection period appears to have diluted specific signals from source regions.

Description: We present measurements of pCO2, O2 concentration, biological oxygen saturation (ΔO2/Ar), and N2 saturation (ΔN2) in Southern Ocean surface waters during austral summer, 2010–2011. Phytoplankton biomass varied strongly across distinct hydrographic zones, with high chlorophyll a (Chl a) concentrations in regions of frontal mixing and sea ice melt. pCO2 and ΔO2/Ar exhibited large spatial gradients (range 90 to 450 µatm and −10 to 60%, respectively) and covaried strongly with Chl a. However, the ratio of biological O2 accumulation to dissolved inorganic carbon (DIC) drawdown was significantly lower than expected from photosynthetic stoichiometry, reflecting the differential time scales of O2 and CO2 air-sea equilibration. We measured significant oceanic CO2 uptake, with a mean air-sea flux (~ −10 mmol m−2 d−1) that significantly exceeded regional climatological values. N2 was mostly supersaturated in surface waters (mean ΔN2 of +2.5%), while physical processes resulted in both supersaturation and undersaturation of mixed layer O2 (mean ΔO2phys = 2.1%). Box model calculations were able to reproduce much of the spatial variability of ΔN2 and ΔO2phys along the cruise track, demonstrating significant effects of air-sea exchange processes (e.g., atmospheric pressure changes and bubble injection) and mixed layer entrainment on surface gas disequilibria. Net community production (NCP) derived from entrainment-corrected surface ΔO2/Ar data, ranged from ~ −40 to 〉 300 mmol O2 m−2 d−1 and showed good coherence with independent NCP estimates based on seasonal mixed layer DIC deficits. Elevated NCP was observed in hydrographic frontal zones and stratified regions of sea ice melt, reflecting physical controls on surface water light fields and nutrient availability.

Description: Siberian river water is a first-order contribution to the Arctic freshwater budget, with the Ob, Yenisey, and Lena supplying nearly half of the total surface freshwater flux. However, few details are known regarding where, when, and how the freshwater transverses the vast Siberian shelf seas. This paper investigates the mechanism, variability, and pathways of the fresh Kara Sea outflow through Vilkitsky Strait toward the Laptev Sea. We utilize a high-resolution ocean model and recent shipboard observations to characterize the freshwater-laden Vilkitsky Strait Current (VSC), and shed new light on the little-studied region between the Kara and Laptev Seas, characterized by harsh ice conditions, contrasting water masses, straits, and a large submarine canyon. The VSC is 10-20 km wide, surface intensified, and varies seasonally (maximum from August to March) and interannually. Average freshwater (volume) transport is 500 ± 120 km3 a-1 (0.53 ± 0.08 Sv), with a baroclinic flow contribution of 50-90%. Interannual transport variability is explained by a storage-release mechanism, where blocking-favorable summer winds hamper the outflow and cause accumulation of freshwater in the Kara Sea. The year following a blocking event is characterized by enhanced transports driven by a baroclinic flow along the coast that is set up by increased freshwater volumes. Eventually, the VSC merges with a slope current and provides a major pathway for Eurasian river water toward the western Arctic along the Eurasian continental slope. Kara (and Laptev) Sea freshwater transport is not correlated with the Arctic Oscillation, but rather driven by regional summer pressure patterns.

Description: We present new major and trace element, high-precision Sr-Nd-Pb (double spike), and Oisotope data for the whole range of rocks from the Holocene Tolbachik volcanic field in the Central Kamchatka Depression (CKD). The Tolbachik rocks range from high-Mg basalts to low-Mg basaltic trachyandesites. The rocks considered in this paper represent mostly Late Holocene eruptions (using tephrochronological dating), including historic ones in 1941, 1975-1976 and 2012-2013. Major compositional features of the Tolbachik volcanic rocks include the prolonged predominance of one erupted magma type, close association of middle-K primitive and high-K evolved rocks, large variations in incompatible element abundances and ratios but narrow range in isotopic composition. We quantify the conditions of the Tolbachik magma origin and evolution and revise previously proposed models. We conclude that all Tolbachik rocks are genetically related by crystal fractionation of medium-K primary magmas with only a small range in trace element and isotope composition. The primary Tolbachik magmas contain ~14 wt% MgO and ~4% wt% H2O and originated by partial melting (~6%) of moderately depleted mantle peridotite with Indian-MORB-type isotopic composition at temperature of ~1250oC and pressure of ~2 GPa. The melting of the mantle wedge was triggered by slab-derived hydrous melts formed at ~2.8 GPa and ~725oC from a mixture of sediments and MORB- and Meiji- type altered oceanic crust. The primary magmas experienced a complex open-system evolution termed Recharge-Evacuation-Fractional Crystallization (REFC). First the original primary magmas underwent open-system crystal fractionation combined with periodic recharge of the magma chamber with more primitive magma, followed by mixing of both magma types, further fractionation and finally eruption. Evolved high-K basalts, which predominate in the Tolbachik field, and basaltic trachyandesites erupted in 2012-2013 approach steady-state REFC liquid compositions at different eruption or replenishment rates. Intermediate rocks, including high-K, high-Mg basalts, are formed by mixing of the evolved and primitive magmas. Evolution of Tolbachik magmas is associated with large fractionation between incompatible trace elements (e.g., Rb/Ba, La/Nb, Ba/Th) and is strongly controlled by the relative difference in partitioning between crystal and liquid phases. The Tolbachik volcanic field shows that open-system scenarios provide more plausible and precise descriptions of long-lived arc magmatic systems than simpler, but often geologically unrealistic, closed-system models.

Description: Highlights: • Comprehensive morphological, seismic, sedimentological, and geotechnical data sets. • Dynamic CPTU provides a powerful, time- and cost-efficient in situ technique. • Development of a regional sub-seafloor strength model offshore Nice airport. • 2D finite element slope stability assessment gives slope failure depth of 〉 50 m. Abstract: In the landslide-prone area near the Nice international airport, southeastern France, an interdisciplinary approach is applied to develop realistic lithological/geometrical profiles and geotechnical/strength sub-seafloor models. Such models are indispensable for slope stability assessments using limit equilibrium or finite element methods. Regression analyses, based on the undrained shear strength (su) of intact gassy sediments are used to generate a sub-seafloor strength model based on 37 short dynamic and eight long static piezocone penetration tests, and laboratory experiments on one Calypso piston and 10 gravity cores. Significant strength variations were detected when comparing measurements from the shelf and the shelf break, with a significant drop in su to 5.5 kPa being interpreted as a weak zone at a depth between 6.5 and 8.5 m below seafloor (mbsf). Here, a 10% reduction of the in situ total unit weight compared to the surrounding sediments is found to coincide with coarse-grained layers that turn into a weak zone and detachment plane for former and present-day gravitational, retrogressive slide events, as seen in 2D chirp profiles. The combination of high-resolution chirp profiles and comprehensive geotechnical information allows us to compute enhanced 2D finite element slope stability analysis with undrained sediment response compared to previous 2D numerical and 3D limit equilibrium assessments. Those models suggest that significant portions (detachment planes at 20 m or even 55 mbsf) of the Quaternary delta and slope apron deposits may be mobilized. Given that factors of safety are equal or less than 1 when further considering the effect of free gas, a high risk for a landslide event of considerable size off Nice international airport is identified.

Description: Highlights: • We manipulated burial levels and burial durations in a field experiment. • We found strong effects even at low burial level (5 cm) and short duration (4 weeks). • Higher shoot mortality, and delayed growth and flowering, lower carbohydrate storage. • Relative rather than absolute sediment burial levels determined plant survival. • Management implications of our findings are discussed. Seagrass meadows, one of the world's most important and productive coastal habitats, are threatened by a range of anthropogenic actions. Burial of seagrass plants due to coastal activities is one important anthropogenic pressure leading to the decline of local populations. In our study, we assessed the response of eelgrass Zostera marina to sediment burial from physiological, morphological, and population parameters. In a full factorial field experiment, burial level (5–20 cm) and burial duration (4–16 weeks) were manipulated. Negative effects were visible even at the lowest burial level (5 cm) and shortest duration (4 weeks), with increasing effects over time and burial level. Buried seagrasses showed higher shoot mortality, delayed growth and flowering and lower carbohydrate storage. The observed effects will likely have an impact on next year's survival of buried plants. Our results have implications for the management of this important coastal plant.

Description: Highlights: • We unveil regional progressive climate modifications fostering the entire plankton food web. • Hydroclimate shifts have progressively impacted the seasonality of plankton. • The profound plankton reorganization warns on the replacement of local species by cosmopolitan ones. Abstract: Growing evidence has shown a profound modification of plankton communities of the North East Atlantic and adjacent seas over the past decades. This drastic change has been attributed to a modification of the environmental conditions that regulate the dynamics and the spatial distribution of ectothermic species in the ocean. Recently, several studies have highlighted modifications of the regional climate station L4 (50° 15.00′N, 4° 13.02′W) in the Western English Channel. We here focus on the modification of the plankton community by studying the long-term, annual and seasonal changes of five zooplankton groups and eight copepod genera. We detail the main composition and the phenology of the plankton communities during four climatic periods identified at the L4 station: 1988–1994, 1995–2000, 2001–2007 and 2008–2012. Our results show that long-term environmental changes underlined by Molinero et al. (2013) drive a profound restructuration of the plankton community modifying the phenology and the dominance of key planktonic groups including fish larvae. Consequently, the slow but deep modifications detected in the plankton community highlight a climate driven ecosystem shift in the Western English Channel.

Description: Highlights • Sediment influence on hydrate dissolution was studied in the field and lab • In the field, CH4(aq) concentrations were at or below theoretical saturation • Dissolution of natural hydrate blanketed by 15 cm thick sediment was measured • This covered hydrate dissolved at a slower rate than nearby exposed hydrates • In the lab, exposed hydrate dissolved faster than covered hydrate Abstract Dissolution rates of naturally occurring gas hydrates vary by orders of magnitude across studies suggesting that environmental factors may influence hydrate dissolution. To determine the role that sediment cover plays in hydrate dissolution, we used a mini-pore fluid array sampler (mPFA) to continuously collect sediment porewater adjacent to a hydrate outcrop and maintain it at in situ pressure for later analysis. This allowed us to measure in situ dissolved hydrocarbon concentrations in the porewater over time without sample loss due to degassing. We deployed the mPFA at a hydrate outcrop at Barkley Canyon on the Cascadia Margin for nine months. This novel approach yielded concentration data that were used to determine the steady-state dissolution rate of the hydrate outcrop and test predictions of the diffusion-control model for dissolution in the field. In the lab, we conducted a series of experiments with artificial hydrate to directly compare dissolution rates between exposed and sediment-covered hydrate. The dissolution rate of the natural hydrate outcrop covered with sediment was 0.06 cm y− 1. The laboratory experiments of sediment-covered hydrate yielded dissolution rates of 0.6 ± 0.5 cm y− 1 (n = 5). In both laboratory and field observations, the dissolution rate of hydrates exposed directly to bulk water (3.9 ± 1.7 cm y− 1 and 3.5 cm y− 1 respectively) was at least an order of magnitude faster than the dissolution rate of sediment covered hydrate. These results are consistent with expectations of diffusion-control and support this model of hydrate dissolution. In nature, sediment may account for the persistence of hydrate in otherwise methane-depleted environments by increasing the diffusive boundary layer and slowing the rate of molecular diffusion via porosity/tortuosity effects. We provide a number of “Lessons Learned” for improving the instrument design and for consideration during future studies.

Description: Widespread seepage of methane from seafloor sediments offshore Svalbard close to the landward limit of the gas hydrate stability zone (GHSZ) may, in part, be driven by hydrate destabilization due to bottom water warming. To assess whether this methane reaches the atmosphere where it may contribute to further warming, we have undertaken comprehensive surveys of methane in seawater and air on the upper slope and shelf region. Near the GHSZ limit at ∼400 m water depth, methane concentrations are highest close to the seabed, reaching 825 nM. A simple box model of dissolved methane removal from bottom waters by horizontal and vertical mixing and microbially mediated oxidation indicates that ∼60% of methane released at the seafloor is oxidized at depth before it mixes with overlying surface waters. Deep waters are therefore not a significant source of methane to intermediate and surface waters; rather, relatively high methane concentrations in these waters (up to 50 nM) are attributed to isopycnal turbulent mixing with shelf waters. On the shelf, extensive seafloor seepage at 〈100 m water depth produces methane concentrations of up to 615 nM. The diffusive flux of methane from sea to air in the vicinity of the landward limit of the GHSZ is ∼4-20 μmol m-2 d-1, which is small relative to other Arctic sources. In support of this, analyses of mole fractions and the carbon isotope signature of atmospheric methane above the seeps do not indicate a significant local contribution from the seafloor source.

Description: We characterise the representation of the Southern Ocean water mass structure and sea ice within a suite of 15 global ocean-ice models run with the Coordinated Ocean-ice Reference Experiment Phase II (CORE-II) protocol. The main focus is the representation of the present (1988-2007) mode and intermediate waters, thus framing an analysis of winter and summer mixed layer depths; temperature, salinity, and potential vorticity structure; and temporal variability of sea ice distributions. We also consider the interannual variability over the same 20 year period. Comparisons are made between models as well as to observation-based analyses where available. The CORE-II models exhibit several biases relative to Southern Ocean observations, including an underestimation of the model mean mixed layer depths of mode and intermediate water masses in March (associated with greater ocean surface heat gain), and an overestimation in September (associated with greater high latitude ocean heat loss and a more northward winter sea-ice extent). In addition, the models have cold and fresh/warm and salty water column biases centred near 50 degrees S. Over the 1933-2007 period, the CORE-II models consistently simulate spatially variable trends in sea-ice concentration, surface freshwater fluxes, mixed layer depths, and 200-700 in ocean heat content. In particular, sea-ice coverage around most of the Antarctic continental shelf is reduced, leading to a cooling and freshening of the near surface waters. The shoaling of the mixed layer is associated with increased surface buoyancy gain, except in the Pacific where sea ice is also influential. The models are in disagreement, despite the common CORE-II atmospheric state, in their spatial pattern of the 20-year trends in the mixed layer depth and sea-ice

Description: We performed simulations with a global model of ocean biogeochemistry forced with orbitally driven anomalies of oceanic conditions for the mid-Holocene, known as Holocene climate optimum, to investigate natural variability in the eastern equatorial Pacific oxygen minimum zone (EEP OMZ). While the global mean temperature during the mid-Holocene was likely slightly higher than the 1961–1990 mean, the sea surface temperature in the EEP was slightly lower. Mid-Holocene oxygen concentrations in the EEP OMZ are generally increased, locally by up to 50%, and the EEP OMZ volume was, depending on definition of the OMZ threshold, at least 6% lower. These higher oxygen levels are the combined result of competing physical and biogeochemical processes. Our results imply that mechanisms for past changes in the EEP OMZ intensity and extension can differ from the global warming driven decline in oxygen levels observed for the recent decades and predicted for the future.

Description: Foulden Maar is a highly resolved maar lake deposit from the South Island of New Zealand comprising laminated diatomite punctuated by numerous diatomaceous turbidites. Basaltic clasts found in debris flow deposits near the base of the cored sedimentary sequence yielded two new ⁴⁰Ar/³⁹Ar dates of 24.51 ± 0.24 and 23.38 ± 0.24 Ma (2σ). The younger date agrees within error with a previously published ⁴⁰Ar/³⁹Ar date of 23.17 ± 0.19 Ma from a basaltic dyke adjacent to the maar crater. The diatomite is inferred to have been deposited over several tens of thousands of years in the latest Oligocene/earliest Miocene, and may have been coeval with the period of rapid glaciation and subsequent deglaciation of Antarctica known as the Mi-1 event. Sediment magnetic properties and SEM measurements indicate that the magnetic signal is dominated by pseudo-single domain pyrrhotite. The most likely source of detrital pyrrhotite is schist country rock fragments from the inferred tephra ring created by the phreatomagmatic eruption that formed the maar. Variations in magnetic mineral concentration indicate a decrease in erosional input throughout the depositional period, suggesting long-term (tens of thousands of years) environmental change in New Zealand in the latest Oligocene/earliest Miocene.

Description: Lanthipeptides are ribosomally synthesized and post-translationally modified microbial secondary metabolites. Here, we report the identification and isolation of streptocollin from Streptomyces collinus Tü 365, a new member of class IV lanthipeptides. Insertion of the constitutive ermE* promoter upstream of the lanthipeptide synthetase gene stcL resulted in peptide production. The streptocollin gene cluster was heterologously expressed in S. coelicolor M1146 and M1152 with 3.5- and 5.5-fold increased yields, respectively. The structure and ring topology of streptocollin were determined by high resolution MS/MS analysis. Streptocollin contains four macrocyclic rings, with one lanthionine and three methyllanthionine residues. To the best of our knowledge, this is the first report on the isolation of a class IV lanthipeptide in preparative amounts, and on the successful heterologous expression of a class IV lanthipeptide gene cluster.

Description: A precise age for the collision of the Kohistan-Ladakh block with Eurasia along the Shyok suture zone (SSZ) is one key to understanding the accretionary history of Tibet and the tectonics of Eurasia during the India-Eurasia collision. Knowing the age of the SSZ also allows the suture to be used as a piercing line for calculating total offset along the Karakoram Fault, which effectively represents the SE border of the Tibetan Plateau and has played a major role in plateau evolution. We present a combined structural, geochemical, and geochronologic study of the SSZ as it is exposed in the Nubra region of India to test two competing hypotheses: that the SSZ is of Late Cretaceous or, alternatively, of Eocene age. Coarse-continental strata of the Saltoro Molasse, mapped in this area, contain detrital zircon populations suggestive of derivation from Eurasia despite the fact that the molasse itself is deposited unconformably onto Kohistan-Ladakh rocks, indicating that the molasse is postcollisional. The youngest population of detrital zircons in these rocks (approximately 92 Ma) and a U/Pb zircon date for a dike that cuts basal molasse outcrops (approximately 85 Ma) imply that deposition of the succession began in the Late Cretaceous. This establishes a minimum age for the SSZ and rules out the possibility of an Eocene collision between Kohistan-Ladakh and Eurasia. Our results support correlation of the SSZ with the Bangong suture zone in Tibet, which implies a total offset across the Karakoram Fault of approximately 130–190 km.

Description: Genomic sequence data have revealed the presence of a large fraction of putatively silent biosynthetic gene clusters in the genomes of actinomycetes that encode for secondary metabolites, which are not detected under standard fermentation conditions. This review focuses on the effects of biological (co-cultivation), chemical, as well as molecular elicitation on secondary metabolism in actinomycetes. Our review covers the literature until June 2014 and exemplifies the diversity of natural products that have been recovered by such approaches from the phylum Actinobacteria.

Description: Key Points: Daily snapshots of TIL strength; synoptic-Scale behavior of the TIL and shear/curl contributions to relative vorticity; TIL within ridges in midlatitude winter is stronger than polar summer TIL High-resolution GPS radio occultation temperature profiles from the COSMIC satellite mission (2007–2013) are used to obtain daily snapshots of the strength of the extratropical tropopause inversion layer (TIL). Its horizontal structure and day-to-day variability are linked to the synoptic situation at near-tropopause level. The strength of the TIL in cyclonic as well as anticyclonic conditions is investigated by separating relative vorticity into curl and shear terms. The analysis shows that the TIL has high zonal variability, and its strength is instantaneously adjusted to the synoptic situation at near-tropopause level. Our key finding is that the TIL within midlatitude ridges in winter is as strong as or stronger than the TIL in polar summer. The strongest TIL in anticyclonic conditions is related to the shear term, while the weaker TIL in cyclonic conditions is enhanced by the curl term.

Description: Highlights: • Acoustically meaningful clustering correlating with ground truth data • Seascape scale acoustic mapping through classification per beam footprint • Bayesian approach for discriminating sedimentary units with low heterogeneity • Geo-acoustic resolution: a new measure of sedimentary acoustic class separability Modern seafloor mapping is based on high resolution MBES systems that provide detailed bathymetric and acoustic intensity (backscatter) information. We examine and validate the performance of two unsupervised MBES classification techniques for discriminating acoustic classes of sedimentary units with small grain size variability. The first technique, based on a principal components analysis (PCA), is commonly used in literature and has been applied for comparison with the more recent approach of Bayesian statistics. By applying these techniques to a MBES dataset from an estuarine area in The Netherlands, we tested their ability to discriminate fine grained sediments (at least 70% silt) holding small percentages of coarser material such as sand, shell hash or shells. We focus on the Bayesian technique as it outputs acoustically significant classes related to backscatter values. This technique utilizes backscatter values averaged over scatter pixels (projected pulse lengths) inside the footprint of each beam. The originality of our application lies in the fact that, the optimal number of classes is derived by utilizing a number of beams simultaneously. It is assumed that the backscatter values per beam vary relatively to the varying seafloor types. By treating the beams separately, across track variation in the seafloor type can also be accounted for. Thereby the classification is guided by outer, more discriminative beams. Additionally we control the optimal number of classes by employing the quantitative criterion of goodness of fit (χ2). The Bayesian acoustic classes show correlation with grain size parameters such as coarse fraction (〉500μm) percentage and mean of the grain size (〈500μm) when analyzed with multiple linear regression. In order to examine the relative scale of the acoustic classification results we compare the Bayesian acoustic classes with underwater video interpretation. Our results reveal that the Bayesian approach enhances the sedimentological interpretation of MBES high resolution data, by providing classification on seascape scale (here meters to tens of meters). Hence we suggest that backscatter processing techniques are more commonly applied to produce classes that discriminate sediments with low grain size contrast. To describe this ability we introduce the term geoacoustic resolution. We want to encourage the use of the Bayesian technique also in deep sea applications, based on AUV data, where sediments express low variability but sampling would be time consuming and costly. The advantages of this method would favor mapping of macro-habitats which appear at meter-scale and require datasets of sufficient resolution in order to be quantitatively described.

Description: High individual growth and mortality rates of herring Clupea harengus membras and goby Pomatoschistus spp. larvae were observed in the estuarine habitat of the Gulf of Riga, Baltic Sea. Both instantaneous mortality (0.76–1.05) as well as growth rate (0.41–0.82 mm day-1) of larval herring were amongst highest observed elsewhere previously. Mortality rates of goby larvae were also high (0.57–1.05), while first ever data on growth rates were provided in this study (0.23–0.35 mm day-1). Our study also evidenced that higher growth rate of marine fish larvae did not result in lower mortalities. We suggest that high growth and mortality rates primarily resulted from a rapidly increasing and high (〉 18 °C) water temperature that masked potential food-web effects. The explanation for observed patterns lies in the interactive manner temperature contributed: i) facilitating prey production, which supported high growth rate and decreased mortalities; ii) exceeding physiological thermal optimum of larvae, which resulted in decreased growth rate and generally high mortalities. Our investigation suggests that the projected climate warming may have significant effect on early life history stages of the dominating marine fish species inhabiting shallow estuaries

Description: Seismicity and tectonic structure of the Alboran Sea were derived from a large amphibious seismological network deployed in the offshore basins and onshore in Spain and Morocco, an area where the convergence between the African and Eurasian plates causes distributed deformation. Crustal structure derived from local earthquake data suggests that the Alboran Sea is underlain by thinned continental crust with a mean thickness of about 20 km. During the 5 months of offshore network operation, a total of 229 local earthquakes were located within the Alboran Sea and neighboring areas. Earthquakes were generally crustal events, and in the offshore domain, most of them occurred at crustal levels of 2 to 15 km depth. Earthquakes in the Alboran Sea are poorly related to large-scale tectonic features and form a 20 to 40 km wide NNE-SSW trending belt of seismicity between Adra (Spain) and Al Hoceima (Morocco), supporting the case for a major left-lateral shear zone across the Alboran Sea. Such a shear zone is in accord with high-resolution bathymetric data and seismic reflection imaging, indicating a number of small active fault zones, some of which offset the seafloor, rather than supporting a well-defined discrete plate boundary fault. Moreover, a number of large faults known to be active as evidenced from bathymetry, seismic reflection, and paleoseismic data such as the Yusuf and Carboneras faults were seismically inactive. Earthquakes below the Western Alboran Basin occurred at 70 to 110 km depth and hence reflected intermediate depth seismicity related to subducted lithosphere.