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  • 1
    ISSN: 1573-5052
    Keywords: Białowieża primeval forest ; Light requirements of species ; Method of seedlings' emergence ; Potentillo albae-Quercetum ; Soil seed bank ; Tilio-Carpinetum
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The research was conducted in two natural forest communities: Potentillo albae-Quercetum (‘oak forest’) which allows much light to reach the forest floor and Tilio-Carpinetum typicum (‘hornbeam forest’) which shades the herb layer heavily. The seed banks were estimated from numbers of seedlings emerging from soil samples over one growing season. (1) Our results confirm the hypothesis that persistent seed banks are mainly formed by species with high light requirements. Of the species found predominantly in the seed bank and absent from the herb layer or occurring there very rarely in both communities 83% of species and 70% of seedlings were strongly light-demanding (Ellenberg's light index 6–9). However, the results do not support the hypothesis that seed banks in natural deciduous forest communities are small, poor in species and do not reflect the species composition of herb layer. (2) The seed banks of both communities were rich in species and relatively large. Species richness in the oak forest turned out to be higher than in the hornbeam forest (51 vs 45 species/2.4 m2), but size was smaller (2659 vs 5789 seedlings/2.4 m2). In the oak forest the most abundant species in the seed bank was Galium boreale, but it constituted only 19% of the total number of seedlings, whereas in the hornbearn forest the dominant species, Urtica dioica, constituted 57% of the total. (3) In each community the species composition of the seed bank and the herb layer was very similar (〉70%). (4) The seed bank was more diverse in the oak forest than in the hornbeam forest (H′ 2.34 vs 1.68). (5) The seed banks of both communities differed in the contribution of species with varied light requirements; in the sunny oak forest species with high light requirements dominated, whereas in the shady hornbeam forest both strongly and moderately light-demanding species had similar contributions. Nomenclature: Follows Ehrendorfer (1973) and Matuszkiewicz (1981).
    Type of Medium: Electronic Resource
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  • 2
    Publication Date: 2010-11-09
    Description: TET2 is a close relative of TET1, an enzyme that converts 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC) in DNA. The gene encoding TET2 resides at chromosome 4q24, in a region showing recurrent microdeletions and copy-neutral loss of heterozygosity (CN-LOH) in patients with diverse myeloid malignancies. Somatic TET2 mutations are frequently observed in myelodysplastic syndromes (MDS), myeloproliferative neoplasms (MPN), MDS/MPN overlap syndromes including chronic myelomonocytic leukaemia (CMML), acute myeloid leukaemias (AML) and secondary AML (sAML). We show here that TET2 mutations associated with myeloid malignancies compromise catalytic activity. Bone marrow samples from patients with TET2 mutations displayed uniformly low levels of 5hmC in genomic DNA compared to bone marrow samples from healthy controls. Moreover, small hairpin RNA (shRNA)-mediated depletion of Tet2 in mouse haematopoietic precursors skewed their differentiation towards monocyte/macrophage lineages in culture. There was no significant difference in DNA methylation between bone marrow samples from patients with high 5hmC versus healthy controls, but samples from patients with low 5hmC showed hypomethylation relative to controls at the majority of differentially methylated CpG sites. Our results demonstrate that Tet2 is important for normal myelopoiesis, and suggest that disruption of TET2 enzymatic activity favours myeloid tumorigenesis. Measurement of 5hmC levels in myeloid malignancies may prove valuable as a diagnostic and prognostic tool, to tailor therapies and assess responses to anticancer drugs.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3003755/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3003755/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ko, Myunggon -- Huang, Yun -- Jankowska, Anna M -- Pape, Utz J -- Tahiliani, Mamta -- Bandukwala, Hozefa S -- An, Jungeun -- Lamperti, Edward D -- Koh, Kian Peng -- Ganetzky, Rebecca -- Liu, X Shirley -- Aravind, L -- Agarwal, Suneet -- Maciejewski, Jaroslaw P -- Rao, Anjana -- 1 UL1 RR 025758-02/RR/NCRR NIH HHS/ -- K08 HL089150/HL/NHLBI NIH HHS/ -- K24 HL077522/HL/NHLBI NIH HHS/ -- R01 AI044432/AI/NIAID NIH HHS/ -- R01 AI044432-12/AI/NIAID NIH HHS/ -- R01 AI044432-13/AI/NIAID NIH HHS/ -- R01 AI44432/AI/NIAID NIH HHS/ -- R01 HD065812/HD/NICHD NIH HHS/ -- R01 HG4069/HG/NHGRI NIH HHS/ -- R01 HL098522/HL/NHLBI NIH HHS/ -- R37 CA042471/CA/NCI NIH HHS/ -- R37 CA042471-20/CA/NCI NIH HHS/ -- R37 CA042471-21/CA/NCI NIH HHS/ -- RC1 DA028422/DA/NIDA NIH HHS/ -- RC1 DA028422-01/DA/NIDA NIH HHS/ -- RC1 DA028422-02/DA/NIDA NIH HHS/ -- UL1 RR025758/RR/NCRR NIH HHS/ -- England -- Nature. 2010 Dec 9;468(7325):839-43. doi: 10.1038/nature09586.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pathology, Harvard Medical School, Immune Disease Institute and Program in Cellular and Molecular Medicine, Children's Hospital Boston, Boston, Massachusetts 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21057493" target="_blank"〉PubMed〈/a〉
    Keywords: 5-Methylcytosine/*metabolism ; Animals ; Biocatalysis ; Cell Differentiation ; Cell Line ; CpG Islands/genetics ; DNA Methylation ; DNA, Neoplasm/chemistry/metabolism ; DNA-Binding Proteins/genetics/*metabolism ; Humans ; *Hydroxylation ; Leukemia, Myeloid, Acute/genetics/*metabolism/pathology ; Mice ; Mice, Inbred C57BL ; Mutant Proteins/genetics/*metabolism ; Mutation ; Myelodysplastic Syndromes/genetics/*metabolism/pathology ; Proto-Oncogene Proteins/genetics/*metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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