ALBERT

Description: Highlights: • Lagrangian ocean analysis is a powerful way to analyse the output of ocean circulation models • We present a review of the Kinematic framework, available tools, and applications of Lagrangian ocean analysis • While there are unresolved questions, the framework is robust enough to be used widely in ocean modelling Abstract: Lagrangian analysis is a powerful way to analyse the output of ocean circulation models and other ocean velocity data such as from altimetry. In the Lagrangian approach, large sets of virtual particles are integrated within the three-dimensional, time-evolving velocity fields. Over several decades, a variety of tools and methods for this purpose have emerged. Here, we review the state of the art in the field of Lagrangian analysis of ocean velocity data, starting from a fundamental kinematic framework and with a focus on large-scale open ocean applications. Beyond the use of explicit velocity fields, we consider the influence of unresolved physics and dynamics on particle trajectories. We comprehensively list and discuss the tools currently available for tracking virtual particles. We then showcase some of the innovative applications of trajectory data, and conclude with some open questions and an outlook. The overall goal of this review paper is to reconcile some of the different techniques and methods in Lagrangian ocean analysis, while recognising the rich diversity of codes that have and continue to emerge, and the challenges of the coming age of petascale computing.

Description: Highlights: • Arctic sea ice extent and solid freshwater in 14 CORE-II models are inter-compared. • The models better represent the variability than the mean state. • The September ice extent trend is reasonably represented by the model ensemble mean. • The descending trend of ice thickness is underestimated compared to observations. • The models underestimate the reduction in solid freshwater content in recent years. Abstract: The Arctic Ocean simulated in fourteen global ocean-sea ice models in the framework of the Coordinated Ocean-ice Reference Experiments, phase II (CORE II) is analyzed. The focus is on the Arctic sea ice extent, the solid freshwater (FW) sources and solid freshwater content (FWC). Available observations are used for model evaluation. The variability of sea ice extent and solid FW budget is more consistently reproduced than their mean state in the models. The descending trend of September sea ice extent is well simulated in terms of the model ensemble mean. Models overestimating sea ice thickness tend to underestimate the descending trend of September sea ice extent. The models underestimate the observed sea ice thinning trend by a factor of two. When averaged on decadal time scales, the variation of Arctic solid FWC is contributed by those of both sea ice production and sea ice transport, which are out of phase in time. The solid FWC decreased in the recent decades, caused mainly by the reduction in sea ice thickness. The models did not simulate the acceleration of sea ice thickness decline, leading to an underestimation of solid FWC trend after 2000. The common model behavior, including the tendency to underestimate the trend of sea ice thickness and March sea ice extent, remains to be improved.

Description: Highlights: • Arctic liquid freshwater budget simulated in 14 CORE-II models is studied. • The models better represent the temporal variability than the mean state. • Multi-model mean (MMM) FW fluxes compare well with observations. • MMM FWC shows an upward trend in the recent years, with an underestimated rate. • FW flux interannual variability is more consistent where volume flux determines it. Abstract: The Arctic Ocean simulated in 14 global ocean-sea ice models in the framework of the Coordinated Ocean-ice Reference Experiments, phase II (CORE-II) is analyzed in this study. The focus is on the Arctic liquid freshwater (FW) sources and freshwater content (FWC). The models agree on the interannual variability of liquid FW transport at the gateways where the ocean volume transport determines the FW transport variability. The variation of liquid FWC is induced by both the surface FW flux (associated with sea ice production) and lateral liquid FW transport, which are in phase when averaged on decadal time scales. The liquid FWC shows an increase starting from the mid-1990s, caused by the reduction of both sea ice formation and liquid FW export, with the former being more significant in most of the models. The mean state of the FW budget is less consistently simulated than the temporal variability. The model ensemble means of liquid FW transport through the Arctic gateways compare well with observations. On average, the models have too high mean FWC, weaker upward trends of FWC in the recent decade than the observation, and low consistency in the temporal variation of FWC spatial distribution, which needs to be further explored for the purpose of model development.

Description: Dissolved free amino acids (DFAA) in seawater are a form of nitrogen (N) available for marine microbes. In oligotrophic environments where N-containing nutrients are the limiting factor for microbial growth, N nutrition from DFAA could be crucial, but as yet it is poorly resolved. Measurements of individual DFAA are challenging as concentrations are typically in the low nmol L− 1 range. Here we report modifications to methodology using o-phthaldialdehyde (OPA) derivatization and reversed phase high performance liquid chromatography (HPLC) that provide a 30-fold improvement in sensitivity enabling the detection of 15 amino acids in seawater with a limit of detection as low as 10 pmol L− 1 with accuracy and precision of better than 10%. This analytical methodology is now suitable for the challenging quantitation of DFAA in oligotrophic seawaters. The method was successfully applied to a suite of seawater samples collected on a cruise crossing the South Atlantic Ocean, where concentrations of DFAAs were generally low (sub nmol L− 1), revealing basin-scale features in the oceanographic distributions of DFAA. This unique dataset implies that DFAAs are an important component of the N cycle in both near-coastal and open oceans. Further calculations suggest that the proportions of organic N originating from DFAA sources were significant, contributing between 0.2 and 200% that of NH4 + and up to 77% that of total inorganic nitrogen in the upper 400 m in some regions of the transect.

Description: Highlights • The Southern Hemisphere mid-latitudes are characterised by obliquity and semi-precession cycles during the Mi-1 deglaciation • The obliquity variability is attributed to polar influence and the semi-precessional variability to tropical influence • Semi-precession cycles do not appear until 23.01 Ma, corresponding to the onset of Antarctic deglaciation • The interaction between polar and tropical influence is related to the position and strength of the westerly wind belt Abstract It is well-known from geologic archives that Pleistocene and Holocene climate is characterised by cyclical variation on a wide range of timescales, and that these cycles of variation interact in complex ways. However, it is rarely possible to reconstruct sub-precessional (〈 20 kyr) climate variations for periods predating the oldest ice-core records (c. 800 ka). Here we present an investigation of orbital to potentially sub-precessional cyclicity from an annually resolved lake sediment core dated to a 100-kyr period in the earliest Miocene (23.03–22.93 Ma) and spanning a period of major Antarctic deglaciation associated with the second half of the Mi-1 event. Principal component analysis (PCA) of sediment bulk density, magnetic susceptibility (MS), and CIELAB L* and b* with a resolution of ~10 years indicates two major environmental processes governing the physical properties records, which we interpret as changes in wind strength and changes in precipitation. Spectral analysis of the principal components indicates that both processes are strongly influenced by obliquity (41 kyr). We interpret this 41-kyr cycle in wind strength and precipitation as related to the changing position and strength of the Southern Hemisphere westerly winds. Precipitation is also influenced by an 11-kyr cycle. The 11-kyr periodicity is potentially related to orbital cyclicity, representing the equatorial semi-precessional maximum insolation cycle. This semi-precession cycle has been identified in a number of records from the Pleistocene and Holocene and has recently been suggested to indicate that insolation in low-latitude regions may be an important driver of millennial-scale climate response to orbital forcing (Feretti et al., 2015). This is the first time this cycle has been identified in a mid-latitude Southern Hemisphere climate archive, as well as the first identification in pre-Pleistocene records. The 11-kyr cycle appears at around 23.01 Ma, which coincides with the initiation of a major phase of Antarctic deglaciation, and strengthens during the subsequent period of rapid ice decay. This pattern suggests that the westerly winds may have expanded north of 50°S at the height of Mi-1, excluding tropical influence from the Foulden Maar site, and subsequently contracted polewards in tandem with warming deep-sea temperatures and Antarctic deglaciation, allowing the advection of tropical waters further south.

Description: Whilst Herpesviridae, which infect higher vertebrates, actively influence host immune responses to ensure viral replication, it is mostly unknown if Alloherpesviridae, which infect lower vertebrates, possess similar abilities. An important antiviral response is clearance of infected cells via apoptosis, which in mammals influences the outcome of infection. Here, we utilise common carp infected with CyHV-3 to determine the effect on the expression of genes encoding apoptosis-related proteins (p53, Caspase 9, Apaf-1, IAP, iNOS) in the pronephros, spleen and gills. The influence of CyHV-3 on CCB cells was also studied and compared to SVCV (a rhabdovirus) which induces apoptosis in carp cell lines. Although CyHV-3 induced iNOS expression in vivo, significant induction of the genetic apoptosis pathway was only seen in the pronephros. In vitro CyHV-3 did not induce apoptosis or apoptosis-related expression whilst SVCV did stimulate apoptosis. This suggests that CyHV-3 possesses mechanisms similar to herpesviruses of higher vertebrates to inhibit the antiviral apoptotic process.

Description: Highlights: • 18 southern European charcoal records document 16,000 years of fire regime changes. • Since the Neolithic, land uses have artificially maintained high fire frequencies. • Human-induced decreases in forest cover led to a reduction in the biomass burned. • Human-modified landscapes affected ecological processes more meaningly than expected. Abstract: Variability in fire regime at the continental scale has primarily been attributed to climate change, often overshadowing the widely potential impact of human activities. However, human ignition modifies the rhythm of fire episodes occurrence (fire frequency), whereas land use alters vegetation composition and fuel load, and thus the amount of biomass burned. It is unclear, however, whether and how humans have exercised a significant influence over fire regimes at continental and millennial scales. Based on sedimentary charcoal records, we use new alternative estimate of fire frequency and biomass burned for the last 16000 years (here after 16 ky) that we evaluate with outputs from climate, vegetation, land use and population models. We find that pronounced regional-scale land use changes in southern Europe at the beginning of the Neolithic (8–6 ky), during the Bronze Age (5–4 ky) and the medieval period (1 ky) caused a doubling of fire frequency compared to the Holocene average (the last 11.5 ky). Despite anthropogenic influences, southern European biomass burned decreased from 7 ky, which is in line both with changes in orbital parameters leading climate cooling and also reductions in biomass availability because of land use. Our study underscores the role of elevation-dependent parameters, and particularly biomass and land management, as major drivers of fire regime variability. Results attest a determinant anthropogenic driving-force on fire regime and a decrease in fire-carbon emissions since 7 ky in Southern Europe.

Description: Highlights • Dating 400 ka paleoclimate record of Neotropics. • Revision and new eruptive volumes for large Central American eruptions. • Age models for Petén Itzá sediments. • Linking lacustrine ash inventory to eruptions from Central America and Mexico. Abstract Lake Petén Itzá, northern Guatemala, lies within a hydrologically closed basin in the south-central area of the Yucatán Peninsula, and was drilled under the auspices of the International Continental Scientific Drilling Program (ICDP) in 2006. At 16°55′N latitude, the lake is ideally located for study of past climate and environmental conditions in the Neotropical lowlands. Because of its great depth (〉160 m), Lake Petén Itzá has a record of continuous sediment accumulation that extends well into the late Pleistocene. A key obstacle to obtaining long climate records from the region is the difficulty of establishing a robust chronology beyond ∼40 ka, the limit of 14C dating. Tephra layers within the Lake Petén Itzá sediments, however, enable development of age/depth relations beyond 40 ka. Ash beds from large-magnitude, Pleistocene-to-Holocene silicic eruptions of caldera volcanoes along the Central American Volcanic Arc (CAVA) were found throughout drill cores collected from Lake Petén Itzá. These ash beds were used to establish a robust chronology extending back 400 ka. We used major- and trace-element glass composition to establish 12 well-constrained correlations between the lacustrine tephra layers in Lake Petén Itzá sediments and dated deposits at the CAVA source volcanoes, and with their marine equivalents in eastern Pacific Ocean sediments. The data also enabled revision of eight previous determinations of erupted volumes and masses, and initial estimates for another four eruptions, as well as the designation of source areas for 14 previously unknown eruptions. The new and revised sedimentation rates for the older sediment successions identify the interglacial of MIS5a between 84 and 72 ka, followed by a stadial between 72 and 59 ka that corresponds to MIS4. We modified the age models for the Lake Petén Itzá sediment sequences, extended the paleoclimate and paleoecological record for this Neotropical region to ∼400 ka, and determined the magnitude and timing of CAVA eruptions.

Description: New bathymetric and seismic reflection data from the Santorini–Amorgos Tectonic Zone in the southern Cyclades have been analysed and a description of the morphology and tectonic structure of the area has been presented. The basins of Anhydros, Amorgos and Santorini–Anafi have been distinguished together with the intermediate Anhydros Horst within the NE-SW oriented Santorini–Amorgos Tectonic Zone which has a length of 60–70 km and a width of 20–25 km. The basins represent tectonic grabens or semi-grabens bordered by the active marginal normal faults of Santorini–Anafi, Amorgos, Ios, Anhydros and Astypalaea. The Santorini–Anafi, Amorgos and Ios marginal faults have their footwall towards the NW where Alpine basement occurs in the submarine scarps and their hangingwall towards the southeast, where the Quaternary sediments have been deposited with maximum thickness of 700 m. Six sedimentary Units 1–6 have been distinguished in the stratigraphic successions of the Santorini–Anafi and the western Anhydros Basin whereas in the rest area only the upper four Units 3–6 have been deposited. This shows the expansion of the basin with subsidence during the Quaternary due to ongoing extension in a northwest-southeast direction. Growth structures are characterized by different periods of maximum deformation as this is indicated by the different sedimentary units with maximum thickness next to each fault. Transverse structures of northwest-southeast direction have been identified along the Santorini–Amorgos Tectonic Zone with distinction of the blocks/segments of Santorini, Anhydros/Kolumbo, Anhydros islet and Amorgos. Recent escarpments with 7–9 m offset observed along the Amorgos Fault indicate that this was activated during the first earthquake of the 7.5 magnitude 1956 events whereas no recent landslide was found in the area that could be related to the 1956 tsunami.