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  • 2005-2009  (73)
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  • 1
    Publication Date: 2009-03-16
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 2
  • 3
  • 4
    Publication Date: 2009-07-07
    Description: Development normally occurs similarly in all individuals within an isogenic population, but mutations often affect the fates of individual organisms differently. This phenomenon, known as partial penetrance, has been observed in diverse developmental systems. However, it remains unclear how the underlying genetic network specifies the set of possible alternative fates and how the relative frequencies of these fates evolve. Here we identify a stochastic cell fate determination process that operates in Bacillus subtilis sporulation mutants and show how it allows genetic control of the penetrance of multiple fates. Mutations in an intercompartmental signalling process generate a set of discrete alternative fates not observed in wild-type cells, including rare formation of two viable 'twin' spores, rather than one within a single cell. By genetically modulating chromosome replication and septation, we can systematically tune the penetrance of each mutant fate. Furthermore, signalling and replication perturbations synergize to significantly increase the penetrance of twin sporulation. These results suggest a potential pathway for developmental evolution between monosporulation and twin sporulation through states of intermediate twin penetrance. Furthermore, time-lapse microscopy of twin sporulation in wild-type Clostridium oceanicum shows a strong resemblance to twin sporulation in these B. subtilis mutants. Together the results suggest that noise can facilitate developmental evolution by enabling the initial expression of discrete morphological traits at low penetrance, and allowing their stabilization by gradual adjustment of genetic parameters.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2716064/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2716064/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Eldar, Avigdor -- Chary, Vasant K -- Xenopoulos, Panagiotis -- Fontes, Michelle E -- Loson, Oliver C -- Dworkin, Jonathan -- Piggot, Patrick J -- Elowitz, Michael B -- GM43577/GM/NIGMS NIH HHS/ -- P50 GM068763/GM/NIGMS NIH HHS/ -- P50 GM068763-060006/GM/NIGMS NIH HHS/ -- R01 GM043577/GM/NIGMS NIH HHS/ -- R01 GM043577-21A2/GM/NIGMS NIH HHS/ -- R01 GM079771/GM/NIGMS NIH HHS/ -- R01 GM079771-03/GM/NIGMS NIH HHS/ -- R01GM079771/GM/NIGMS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2009 Jul 23;460(7254):510-4. doi: 10.1038/nature08150. Epub 2009 Jul 5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute and Division of Biology and Department of Applied Physics, California Institute of Technology, Pasadena, California 91125, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19578359" target="_blank"〉PubMed〈/a〉
    Keywords: Bacillus subtilis/genetics/*physiology ; *Biological Evolution ; DNA Replication ; *Gene Expression Regulation, Bacterial ; Spores, Bacterial/growth & development
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2006-12-16
    Description: The Stardust spacecraft collected thousands of particles from comet 81P/Wild 2 and returned them to Earth for laboratory study. The preliminary examination of these samples shows that the nonvolatile portion of the comet is an unequilibrated assortment of materials that have both presolar and solar system origin. The comet contains an abundance of silicate grains that are much larger than predictions of interstellar grain models, and many of these are high-temperature minerals that appear to have formed in the inner regions of the solar nebula. Their presence in a comet proves that the formation of the solar system included mixing on the grandest scales.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Brownlee, Don -- Tsou, Peter -- Aleon, Jerome -- Alexander, Conel M O'd -- Araki, Tohru -- Bajt, Sasa -- Baratta, Giuseppe A -- Bastien, Ron -- Bland, Phil -- Bleuet, Pierre -- Borg, Janet -- Bradley, John P -- Brearley, Adrian -- Brenker, F -- Brennan, Sean -- Bridges, John C -- Browning, Nigel D -- Brucato, John R -- Bullock, E -- Burchell, Mark J -- Busemann, Henner -- Butterworth, Anna -- Chaussidon, Marc -- Cheuvront, Allan -- Chi, Miaofang -- Cintala, Mark J -- Clark, B C -- Clemett, Simon J -- Cody, George -- Colangeli, Luigi -- Cooper, George -- Cordier, Patrick -- Daghlian, C -- Dai, Zurong -- D'Hendecourt, Louis -- Djouadi, Zahia -- Dominguez, Gerardo -- Duxbury, Tom -- Dworkin, Jason P -- Ebel, Denton S -- Economou, Thanasis E -- Fakra, Sirine -- Fairey, Sam A J -- Fallon, Stewart -- Ferrini, Gianluca -- Ferroir, T -- Fleckenstein, Holger -- Floss, Christine -- Flynn, George -- Franchi, Ian A -- Fries, Marc -- Gainsforth, Z -- Gallien, J-P -- Genge, Matt -- Gilles, Mary K -- Gillet, Philipe -- Gilmour, Jamie -- Glavin, Daniel P -- Gounelle, Matthieu -- Grady, Monica M -- Graham, Giles A -- Grant, P G -- Green, Simon F -- Grossemy, Faustine -- Grossman, Lawrence -- Grossman, Jeffrey N -- Guan, Yunbin -- Hagiya, Kenji -- Harvey, Ralph -- Heck, Philipp -- Herzog, Gregory F -- Hoppe, Peter -- Horz, Friedrich -- Huth, Joachim -- Hutcheon, Ian D -- Ignatyev, Konstantin -- Ishii, Hope -- Ito, Motoo -- Jacob, Damien -- Jacobsen, Chris -- Jacobsen, Stein -- Jones, Steven -- Joswiak, David -- Jurewicz, Amy -- Kearsley, Anton T -- Keller, Lindsay P -- Khodja, H -- Kilcoyne, A L David -- Kissel, Jochen -- Krot, Alexander -- Langenhorst, Falko -- Lanzirotti, Antonio -- Le, Loan -- Leshin, Laurie A -- Leitner, J -- Lemelle, L -- Leroux, Hugues -- Liu, Ming-Chang -- Luening, K -- Lyon, Ian -- Macpherson, Glen -- Marcus, Matthew A -- Marhas, Kuljeet -- Marty, Bernard -- Matrajt, Graciela -- McKeegan, Kevin -- Meibom, Anders -- Mennella, Vito -- Messenger, Keiko -- Messenger, Scott -- Mikouchi, Takashi -- Mostefaoui, Smail -- Nakamura, Tomoki -- Nakano, T -- Newville, M -- Nittler, Larry R -- Ohnishi, Ichiro -- Ohsumi, Kazumasa -- Okudaira, Kyoko -- Papanastassiou, Dimitri A -- Palma, Russ -- Palumbo, Maria E -- Pepin, Robert O -- Perkins, David -- Perronnet, Murielle -- Pianetta, P -- Rao, William -- Rietmeijer, Frans J M -- Robert, Francois -- Rost, D -- Rotundi, Alessandra -- Ryan, Robert -- Sandford, Scott A -- Schwandt, Craig S -- See, Thomas H -- Schlutter, Dennis -- Sheffield-Parker, J -- Simionovici, Alexandre -- Simon, Steven -- Sitnitsky, I -- Snead, Christopher J -- Spencer, Maegan K -- Stadermann, Frank J -- Steele, Andrew -- Stephan, Thomas -- Stroud, Rhonda -- Susini, Jean -- Sutton, S R -- Suzuki, Y -- Taheri, Mitra -- Taylor, Susan -- Teslich, Nick -- Tomeoka, Kazu -- Tomioka, Naotaka -- Toppani, Alice -- Trigo-Rodriguez, Josep M -- Troadec, David -- Tsuchiyama, Akira -- Tuzzolino, Anthony J -- Tyliszczak, Tolek -- Uesugi, K -- Velbel, Michael -- Vellenga, Joe -- Vicenzi, E -- Vincze, L -- Warren, Jack -- Weber, Iris -- Weisberg, Mike -- Westphal, Andrew J -- Wirick, Sue -- Wooden, Diane -- Wopenka, Brigitte -- Wozniakiewicz, Penelope -- Wright, Ian -- Yabuta, Hikaru -- Yano, Hajime -- Young, Edward D -- Zare, Richard N -- Zega, Thomas -- Ziegler, Karen -- Zimmerman, Laurent -- Zinner, Ernst -- Zolensky, Michael -- New York, N.Y. -- Science. 2006 Dec 15;314(5806):1711-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Astronomy, University of Washington, Seattle, WA 98195, USA. brownlee@astro.washington.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/17170289" target="_blank"〉PubMed〈/a〉
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 6
    Publication Date: 2006-12-16
    Description: Organics found in comet 81P/Wild 2 samples show a heterogeneous and unequilibrated distribution in abundance and composition. Some organics are similar, but not identical, to those in interplanetary dust particles and carbonaceous meteorites. A class of aromatic-poor organic material is also present. The organics are rich in oxygen and nitrogen compared with meteoritic organics. Aromatic compounds are present, but the samples tend to be relatively poorer in aromatics than are meteorites and interplanetary dust particles. The presence of deuterium and nitrogen-15 excesses suggest that some organics have an interstellar/protostellar heritage. Although the variable extent of modification of these materials by impact capture is not yet fully constrained, a diverse suite of organic compounds is present and identifiable within the returned samples.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sandford, Scott A -- Aleon, Jerome -- Alexander, Conel M O'd -- Araki, Tohru -- Bajt, Sasa -- Baratta, Giuseppe A -- Borg, Janet -- Bradley, John P -- Brownlee, Donald E -- Brucato, John R -- Burchell, Mark J -- Busemann, Henner -- Butterworth, Anna -- Clemett, Simon J -- Cody, George -- Colangeli, Luigi -- Cooper, George -- D'Hendecourt, Louis -- Djouadi, Zahia -- Dworkin, Jason P -- Ferrini, Gianluca -- Fleckenstein, Holger -- Flynn, George J -- Franchi, Ian A -- Fries, Marc -- Gilles, Mary K -- Glavin, Daniel P -- Gounelle, Matthieu -- Grossemy, Faustine -- Jacobsen, Chris -- Keller, Lindsay P -- Kilcoyne, A L David -- Leitner, Jan -- Matrajt, Graciela -- Meibom, Anders -- Mennella, Vito -- Mostefaoui, Smail -- Nittler, Larry R -- Palumbo, Maria E -- Papanastassiou, Dimitri A -- Robert, Francois -- Rotundi, Alessandra -- Snead, Christopher J -- Spencer, Maegan K -- Stadermann, Frank J -- Steele, Andrew -- Stephan, Thomas -- Tsou, Peter -- Tyliszczak, Tolek -- Westphal, Andrew J -- Wirick, Sue -- Wopenka, Brigitte -- Yabuta, Hikaru -- Zare, Richard N -- Zolensky, Michael E -- New York, N.Y. -- Science. 2006 Dec 15;314(5806):1720-4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Astrophysics Branch, NASA-Ames Research Center, Moffett Field, CA 94035, USA. ssandford@mail.arc.nasa.gov〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/17170291" target="_blank"〉PubMed〈/a〉
    Keywords: Carbon/analysis ; Cosmic Dust/analysis ; Deuterium/analysis ; *Meteoroids ; Nitrogen/analysis ; Nitrogen Isotopes/analysis ; Organic Chemicals/*analysis ; Oxygen/analysis ; Polycyclic Hydrocarbons, Aromatic/analysis ; Spacecraft
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2008-10-18
    Description: Miller's 1950s experiments used, besides the apparatus known in textbooks, one that generated a hot water mist in the spark flask, simulating a water vapor-rich volcanic eruption. We found the original extracts of this experiment in Miller's material and reanalyzed them. The volcanic apparatus produced a wider variety of amino acids than the classic one. Release of reduced gases in volcanic eruptions accompanied by lightning could have been common on the early Earth. Prebiotic compounds synthesized in these environments could have locally accumulated, where they could have undergone further processing.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Johnson, Adam P -- Cleaves, H James -- Dworkin, Jason P -- Glavin, Daniel P -- Lazcano, Antonio -- Bada, Jeffrey L -- New York, N.Y. -- Science. 2008 Oct 17;322(5900):404. doi: 10.1126/science.1161527.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Interdisciplinary Biochemistry Program, Indiana University, Bloomington, IN 47401, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18927386" target="_blank"〉PubMed〈/a〉
    Keywords: Amines/chemistry ; Amino Acids/*chemistry ; Ammonia/chemistry ; Atmosphere ; *Evolution, Chemical ; Hydrogen/chemistry ; Lightning ; Methane/chemistry ; Oxidation-Reduction ; *Volcanic Eruptions ; Water
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 8
    Publication Date: 2007-03-24
    Description: The dynamic process of differentiation depends on the architecture, quantitative parameters, and noise of underlying genetic circuits. However, it remains unclear how these elements combine to control cellular behavior. We analyzed the probabilistic and transient differentiation of Bacillus subtilis cells into the state of competence. A few key parameters independently tuned the frequency of initiation and the duration of competence episodes and allowed the circuit to access different dynamic regimes, including oscillation. Altering circuit architecture showed that the duration of competence events can be made more precise. We used an experimental method to reduce global cellular noise and showed that noise levels are correlated with frequency of differentiation events. Together, the data reveal a noise-dependent circuit that is remarkably resilient and tunable in terms of its dynamic behavior.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Suel, Gurol M -- Kulkarni, Rajan P -- Dworkin, Jonathan -- Garcia-Ojalvo, Jordi -- Elowitz, Michael B -- GM068763/GM/NIGMS NIH HHS/ -- GM079771/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2007 Mar 23;315(5819):1716-9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Green Center Division for Systems Biology and Department of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/17379809" target="_blank"〉PubMed〈/a〉
    Keywords: Bacillus subtilis/cytology/*genetics/metabolism ; Bacterial Proteins/biosynthesis/genetics/*metabolism ; Gene Expression ; Genes, Bacterial ; Isopropyl Thiogalactoside/pharmacology ; Luminescent Proteins/biosynthesis ; Mathematics ; Models, Genetic ; Models, Statistical ; Mutation ; Probability ; Promoter Regions, Genetic ; Transcription Factors/genetics/*metabolism ; *Transformation, Bacterial
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 9
    Publication Date: 2007-03-31
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dworkin, Michael -- Vale, Shanna -- Crivella, Ellen -- New York, N.Y. -- Science. 2007 Mar 30;315(5820):1791-2; author reply 1791-2.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/17395813" target="_blank"〉PubMed〈/a〉
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 10
    Publication Date: 2006-07-19
    Print ISSN: 0018-067X
    Electronic ISSN: 1365-2540
    Topics: Biology
    Published by Springer Nature
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