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  • 2015-2019  (206)
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  • 1
    Publication Date: 2023-01-13
    Description: HPLC measured chlorophyll data ad the ratio of daignostic marker pigments to chla. Dimethylsulfoniopropionate and dimethylsulfide concentrations measured on water samples
    Type: Dataset
    Format: application/zip, 6 datasets
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  • 2
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    Unknown
    PANGAEA
    In:  Supplement to: Klawonn, Isabell; Eichner, Meri J; Wilson, Samuel T; Moradi, Nasrollah; Thamdrup, Bo; Kümmel, Steffen; Gehre, Matthias; Khalili, Arzhang; Grossart, Hans-Peter; Karl, David Michael; Ploug, Helle (2020): Distinct nitrogen cycling and steep chemical gradients in Trichodesmium colonies. The ISME Journal, 14(2), 399-412, https://doi.org/10.1038/s41396-019-0514-9
    Publication Date: 2023-01-13
    Description: Trichodesmium is an important dinitrogen (N~2~)-fixing cyanobacterium in marine ecosystems. Recent nucleic acid analyses indicate that Trichodesmium colonies with their diverse epibionts support various nitrogen (N) transformations beyond N~2~-fixation. However, rates of these transformations and concentration gradients of N-compounds in Trichodesmium colonies remain largely unresolved. We combined isotope-tracer incubations, micro-profiling, and numeric modelling to explore carbon fixation, N-cycling processes, as well as oxygen, ammonium and nitrate concentration gradients in individual field-sampled Trichodesmium colonies. Colonies were net-autotrophic, with carbon and N~2~-fixation occurring mostly at day-time. Ten percent of the fixed N was released as ammonium after 12-hour incubations. Nitrification was not detectable but nitrate consumption was high when nitrate was added. The consumed nitrate was partly reduced to ammonium, while denitrification was insignificant. Thus, the potential N-transformation network was characterized by fixed N gain and recycling processes rather than denitrification. Oxygen concentrations within colonies were 60–200% air-saturation. Moreover, our modelling predicted steep concentration gradients, with up to 6-fold higher ammonium concentrations, and nitrate depletion in the colony centre compared to the ambient seawater. These gradients created a chemically heterogeneous microenvironment, presumably facilitating diverse microbial metabolisms in millimetre-sized Trichodesmium colonies.
    Keywords: Computer-simulated concentration profiles; File format; File name; File size; Microsensor concentration profiles; Uniform resource locator/link to file
    Type: Dataset
    Format: text/tab-separated-values, 12 data points
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  • 3
    Publication Date: 2023-12-12
    Keywords: Arctic Ocean; ARK-XXIX/3; Attenuation, optical beam transmission; AWI_PhyOce; Barents Sea; Calculated; Computed; Conductivity; CTD, SEA-BIRD SBE 911plus, SN T5101-C3570; CTD/Rosette; CTD-RO; Date/Time of event; Density, sigma-theta (0); DEPTH, water; Elevation of event; Event label; Fluorometer; Fluorometer, Dr. Haardt Instruments; Fluorometer, WET Labs ECO AFL/FL; Latitude of event; Longitude of event; Norwegian Sea; Oxygen; Oxygen saturation; Oxygen sensor, SBE 43; Physical Oceanography @ AWI; Polarstern; Pressure, water; PS94; PS94/001-1; PS94/002-1; PS94/004-1; PS94/004-3; PS94/004-5; PS94/006-1; PS94/008-1; PS94/010-1; PS94/012-1; PS94/014-1; PS94/018-1; PS94/018-3; PS94/018-5; PS94/021-1; PS94/025-1; PS94/030-2; PS94/031-1; PS94/032-2; PS94/032-5; PS94/032-7; PS94/032-9; PS94/034-1; PS94/036-2; PS94/038-1; PS94/040-1; PS94/040-3; PS94/042-1; PS94/044-1; PS94/046-3; PS94/046-4; PS94/048-1; PS94/050-1; PS94/050-4; PS94/050-6; PS94/050-8; PS94/054-2; PS94/054-4; PS94/058-1; PS94/058-3; PS94/058-5; PS94/059-1; PS94/061-1; PS94/062-1; PS94/062-3; PS94/064-1; PS94/066-1; PS94/068-1; PS94/069-4; PS94/069-5; PS94/070-1; PS94/072-1; PS94/074-1; PS94/076-1; PS94/076-3; PS94/078-1; PS94/080-1; PS94/081-2; PS94/081-5; PS94/081-7; PS94/083-1; PS94/085-1; PS94/089-1; PS94/091-1; PS94/094-1; PS94/096-2; PS94/096-7; PS94/099-2; PS94/101-2; PS94/101-5; PS94/101-7; PS94/101-9; PS94/105-1; PS94/115-1; PS94/117-2; PS94/117-4; PS94/117-6; PS94/118-1; PS94/121-1; PS94/123-1; PS94/125-2; PS94/125-5; PS94/125-7; PS94/128-1; PS94/130-1; PS94/132-1; PS94/134-1; PS94/147-1; PS94/149-1; PS94/149-4; PS94/153-1; PS94/153-4; PS94/157-1; PS94/161-1; PS94/161-4; PS94/165-1; PS94/169-1; PS94/169-2; PS94/173-1; Salinity; Temperature, water; Temperature, water, potential; Transmissometer, WET Labs, C-Star
    Type: Dataset
    Format: text/tab-separated-values, 1990261 data points
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  • 4
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    Unknown
    PANGAEA
    In:  Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven
    Publication Date: 2023-12-12
    Keywords: Arctic Ocean; ARK-XXIX/1, TRANSSIZ; Attenuation, optical beam transmission; AWI_PhyOce; Calculated; Conductivity; CTD, SEA-BIRD SBE 911plus, SN T5101-C3570; CTD/Rosette; CTD-RO; Date/Time of event; Density, sigma-theta (0); DEPTH, water; Elevation of event; Event label; Fluorometer; Fluorometer, WET Labs ECO AFL/FL; Latitude of event; Longitude of event; North Greenland Sea; Number of observations; Oxygen; Oxygen saturation; Oxygen sensor, SBE 43; Physical Oceanography @ AWI; Polarstern; Pressure, water; PS92; PS92/010-1; PS92/019-14; PS92/019-15; PS92/019-5; PS92/019-8; PS92/020-1; PS92/021-1; PS92/023-1; PS92/024-1; PS92/025-1; PS92/026-1; PS92/027-13; PS92/027-3; PS92/027-4; PS92/027-7; PS92/028-1; PS92/029-1; PS92/030-1; PS92/031-12; PS92/031-3; PS92/031-4; PS92/031-6; PS92/032-1; PS92/032-14; PS92/032-5; PS92/032-6; PS92/033-1; PS92/034-1; PS92/035-1; PS92/036-1; PS92/037-1; PS92/039-11; PS92/039-15; PS92/039-8; PS92/039-9; PS92/040-4; PS92/043-1; PS92/043-5; PS92/043-6; PS92/043-9; PS92/046-14; PS92/046-2; PS92/046-3; PS92/046-4; PS92/047-19; PS92/047-4; PS92/047-6; PS92/047-7; PS92/050-1; PS92/051-1; PS92/052-1; PS92/053-1; PS92/055-1; PS92/056-3; Salinity; Temperature, water; Temperature, water, potential; Transmissometer, WET Labs, C-Star
    Type: Dataset
    Format: text/tab-separated-values, 532752 data points
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  • 5
    Publication Date: 2023-12-12
    Keywords: Arctic Ocean; ARK-XXIX/1, TRANSSIZ; Attenuation, optical beam transmission; AWI_PhyOce; Bottle number; Calculated; Conductivity; CTD, SEA-BIRD SBE 911plus, SN T5101-C3570; CTD/Rosette; CTD-RO; Date/Time of event; Density, sigma-theta (0); DEPTH, water; Elevation of event; Event label; Fluorometer; Fluorometer, WET Labs ECO AFL/FL; Latitude of event; Longitude of event; North Greenland Sea; Oxygen; Oxygen saturation; Oxygen sensor, SBE 43; Physical Oceanography @ AWI; Polarstern; Pressure, water; PS92; PS92/010-1; PS92/019-14; PS92/019-15; PS92/019-5; PS92/019-8; PS92/020-1; PS92/021-1; PS92/023-1; PS92/024-1; PS92/026-1; PS92/027-13; PS92/027-3; PS92/027-4; PS92/027-7; PS92/028-1; PS92/029-1; PS92/030-1; PS92/031-12; PS92/031-3; PS92/031-4; PS92/031-6; PS92/032-1; PS92/032-14; PS92/032-5; PS92/032-6; PS92/033-1; PS92/034-1; PS92/035-1; PS92/036-1; PS92/037-1; PS92/039-11; PS92/039-8; PS92/039-9; PS92/040-4; PS92/043-1; PS92/043-5; PS92/043-6; PS92/043-9; PS92/046-14; PS92/046-2; PS92/046-3; PS92/046-4; PS92/047-19; PS92/047-4; PS92/047-6; PS92/047-7; PS92/050-1; PS92/051-1; PS92/052-1; PS92/053-1; PS92/055-1; PS92/056-3; Salinity; Temperature, water; Temperature, water, potential; Transmissometer, WET Labs, C-Star
    Type: Dataset
    Format: text/tab-separated-values, 11858 data points
    Location Call Number Expected Availability
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  • 6
    Publication Date: 2023-12-12
    Keywords: Arctic Ocean; ARK-XXIX/3; Attenuation, optical beam transmission; AWI_PhyOce; Barents Sea; Bottle number; Calculated; Conductivity; CTD, SEA-BIRD SBE 911plus, SN T5101-C3570; CTD/Rosette; CTD-RO; Date/Time of event; Density, sigma-theta (0); DEPTH, water; Elevation of event; Event label; Fluorometer; Fluorometer, Dr. Haardt Instruments; Fluorometer, WET Labs ECO AFL/FL; Latitude of event; Longitude of event; Norwegian Sea; Oxygen; Oxygen saturation; Oxygen sensor, SBE 43; Physical Oceanography @ AWI; Polarstern; Pressure, water; PS94; PS94/001-1; PS94/002-1; PS94/004-1; PS94/004-3; PS94/004-5; PS94/006-1; PS94/008-1; PS94/010-1; PS94/018-1; PS94/018-3; PS94/018-5; PS94/025-1; PS94/030-2; PS94/032-2; PS94/032-5; PS94/032-7; PS94/032-9; PS94/034-1; PS94/036-2; PS94/038-1; PS94/040-1; PS94/040-3; PS94/042-1; PS94/044-1; PS94/046-4; PS94/048-1; PS94/050-1; PS94/050-4; PS94/050-6; PS94/050-8; PS94/054-2; PS94/054-4; PS94/058-1; PS94/058-3; PS94/058-5; PS94/059-1; PS94/061-1; PS94/062-1; PS94/062-3; PS94/064-1; PS94/066-1; PS94/068-1; PS94/069-4; PS94/069-5; PS94/070-1; PS94/072-1; PS94/074-1; PS94/076-1; PS94/076-3; PS94/078-1; PS94/080-1; PS94/081-2; PS94/081-5; PS94/081-7; PS94/083-1; PS94/085-1; PS94/089-1; PS94/091-1; PS94/094-1; PS94/096-2; PS94/096-7; PS94/099-2; PS94/101-2; PS94/101-5; PS94/101-7; PS94/101-9; PS94/105-1; PS94/115-1; PS94/117-2; PS94/117-4; PS94/117-6; PS94/118-1; PS94/121-1; PS94/123-1; PS94/125-2; PS94/125-5; PS94/125-7; PS94/128-1; PS94/130-1; PS94/132-1; PS94/134-1; PS94/147-1; PS94/149-1; PS94/149-4; PS94/153-1; PS94/153-4; PS94/157-1; PS94/161-1; PS94/161-4; PS94/165-1; PS94/169-1; PS94/169-2; PS94/173-1; Salinity; Temperature, water; Temperature, water, potential; Transmissometer, WET Labs, C-Star
    Type: Dataset
    Format: text/tab-separated-values, 24525 data points
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  • 7
    Publication Date: 2024-03-15
    Description: To predict effects of climate change on phytoplankton, it is crucial to understand how their mechanisms for carbon acquisition respond to environmental conditions. Aiming to shed light on the responses of extra- and intracellular inorganic C (Ci) fluxes, the cyanobacterium Trichodesmium erythraeum IMS101 was grown with different nitrogen sources (N2 vs NO3 –) and pCO2 levels (380 vs 1400 µatm). Cellular Ci fluxes were assessed by combining membrane inlet mass spectrometry (MIMS), 13C fractionation measurements, and modelling. Aside from a significant decrease in Ci affinity at elevated pCO2 and changes in CO2 efflux with different N sources, extracellular Ci fluxes estimated by MIMS were largely unaffected by the treatments. 13C fractionation during biomass production, however, increased with pCO2, irrespective of the N source. Strong discrepancies were observed in CO2 leakage estimates obtained by MIMS and a 13C-based approach, which further increased under elevated pCO2. These offsets could be explained by applying a model that comprises extracellular CO2 and HCO3– fluxes as well as internal Ci cycling around the carboxysome via the CO2 uptake facilitator NDH-14. Assuming unidirectional, kinetic fractionation between CO2 and HCO3– in the cytosol or enzymatic fractionation by NDH-14, both significantly improved the comparability of leakage estimates. Our results highlight the importance of internal Ci cycling for 13C composition as well as cellular energy budgets of Trichodesmium, which ought to be considered in process studies on climate change effects.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Aragonite saturation state; Bacteria; Bicarbonate ion; Bicarbonate uptake in chlorophyll, standard deviation; Bicarbonate uptake rate, per chlorophyll a; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Carbon dioxide efflux, per chlorophyll a; Carbon dioxide efflux, per chlorophyll a, standard deviation; Carbon dioxide uptake, per chlorophyll, standard deviation; Carbon dioxide uptake rate, per chlorophyll a; Carbon fixation rate, per chlorophyll a; Carbon fixation rate, standard deviation; Carbon uptake rate, standard deviation; Cyanobacteria; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gross carbon uptake rate, per chlorophyll a; Laboratory experiment; Laboratory strains; Not applicable; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; pH, standard deviation; Phytoplankton; Potentiometric; Potentiometric titration; Primary production/Photosynthesis; Ratio; Ratio, standard deviation; Salinity; Single species; Species; Temperature, water; Time point, descriptive; Treatment; Trichodesmium erythraeum; Type
    Type: Dataset
    Format: text/tab-separated-values, 580 data points
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  • 8
    Publication Date: 2016-10-26
    Print ISSN: 0011-183X
    Electronic ISSN: 1435-0653
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by Wiley
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  • 9
    Publication Date: 2018-11-01
    Print ISSN: 1742-6588
    Electronic ISSN: 1742-6596
    Topics: Physics
    Published by Institute of Physics
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  • 10
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