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  • 1
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    PANGAEA
    In:  Supplement to: Wood, Hannah; Widdicombe, Stephen; Spicer, John I (2009): The influence of hypercapnia and the infaunal brittlestar Amphiura filiformis on sediment nutrient flux – will ocean acidification affect nutrient exchange? Biogeosciences, 6(10), 2015-2024, https://doi.org/10.5194/bg-6-2015-2009
    Publication Date: 2023-05-12
    Description: Rising levels of atmospheric carbon dioxide and the concomitant increased uptake of this by the oceans is resulting in hypercapnia-related reduction of ocean pH. Research focussed on the direct effects of these physicochemical changes on marine invertebrates has begun to improve our understanding of impacts at the level of individual physiologies. However, CO2-related impairment of organisms' contribution to ecological or ecosystem processes has barely been addressed. The burrowing ophiuroid Amphiura filiformis, which has a physiology that makes it susceptible to reduced pH, plays a key role in sediment nutrient cycling by mixing and irrigating the sediment, a process known as bioturbation. Here we investigate the role of A. filiformis in modifying nutrient flux rates across the sediment-water boundary and the impact of CO2- related acidification on this process. A 40 day exposure study was conducted under predicted pH scenarios from the years 2100 (pH 7.7) and 2300 (pH 7.3), plus an additional treatment of pH 6.8. This study demonstrated strong relationships between A. filiformis density and cycling of some nutrients; activity increases the sediment uptake of phosphate and the release of nitrite and nitrate. No relationship between A. filiformis density and the flux of ammonium or silicate were observed. Results also indicated that, within the timescale of this experiment, effects at the individual bioturbator level appear not to translate into reduced ecosystem influence. However, long term survival of key bioturbating species is far from assured and changes in both bioturbation and microbial processes could alter key biogeochemical processes in future, more acidic oceans.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Ammonium, flux; Amphiura filiformis; Animalia; Benthic animals; Benthos; Carbon, inorganic, dissolved; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Echinodermata; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Experimental treatment; Experiment day; Laboratory experiment; Multi meter, WTW, LF 197; Nitrate, flux; Nitrite, flux; North Atlantic; Nutrient autoanalyzer (Bran and Luebbe, AAIII); OA-ICC; Ocean Acidification International Coordination Centre; Other studied parameter or process; pH; pH, standard deviation; pH meter (Mettler Toledo, USA); Phosphate, flux; Salinity; Silicate, flux; Single species; Temperate; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 2727 data points
    Location Call Number Expected Availability
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  • 2
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    PANGAEA
    In:  Supplement to: Bibby, Ruth; Cleall-Harding, Polly; Rundle, Simon; Widdicombe, Stephen; Spicer, John I (2007): Ocean acidification disrupts induced defences in the intertidal gastropod Littorina littorea. Biology Letters, 3(6), 699-701, https://doi.org/10.1098/rsbl.2007.0457
    Publication Date: 2024-03-15
    Description: We demonstrate that acidified seawater can have indirect biological effects by disrupting the capability of organisms to express induced defences, hence, increasing their vulnerability to predation. The intertidal gastropod Littorina littorea produced thicker shells in the presence of predation (crab) cues but this response was disrupted at low seawater pH. This response was accompanied by a marked depression in metabolic rate (hypometabolism) under the joint stress of high predation risk and reduced pH. However, snails in this treatment apparently compensated for a lack of morphological defence, by increasing their avoidance behaviour, which, in turn, could affect their interactions with other organisms. Together, these findings suggest that biological effects from ocean acidification may be complex and extend beyond simple direct effects.
    Keywords: Alkalinity, total; Animalia; Aragonite saturation state; Automated CO2 analyzer (CIBA-Corning 965, UK); Behaviour; Benthic animals; Benthos; Bibby_etal_07; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; EXP; Experiment; Experimental treatment; Fugacity of carbon dioxide in seawater; Growth/Morphology; Laboratory experiment; Littorina littorea; Littorina littorea shell thickness increase; Littorina littorea stress avoidance responce; Measured; Mollusca; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Oxygen consumption; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, Electrode; Respiration; Salinity; Single species; Strathkelvin 781 O2 electrode; Temperate; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 72 data points
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  • 3
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    PANGAEA
    In:  Supplement to: Bibby, Ruth; Widdicombe, Stephen; Parry, Helen E; Spicer, John I; Pipe, R (2008): Effects of ocean acidification on the immune response of the blue mussel Mytilus edulis. Aquatic Biology, 2(1), 97-74, https://doi.org/10.3354/ab00037
    Publication Date: 2024-03-15
    Description: The effects of medium term (32 d) hypercapnia on the immune response of Mytilus edulis were investigated in mussels exposed to acidified (using CO2) sea water (pH 7.7, 7.5 or 6.7; control: pH 7.8). Levels of phagocytosis increased significantly during the exposure period, suggesting an immune response induced by the experimental set-up. However, this induced stress response was suppressed when mussels were exposed to acidified sea water. Acidified sea water did not have any significant effects on other immuno-surveillance parameters measured (superoxide anion production, total and differential cell counts). These results suggest that ocean acidification may impact the physiological condition and functionality of the haemocytes and could have a significant effect on cellular signalling pathways, particularly those pathways that rely on specific concentrations of calcium, and so may be disrupted by calcium carbonate shell dissolution.
    Keywords: Alkalinity, total; Animalia; Aragonite saturation state; Basophil cells; Basophil cells, absolute numbers; Benthic animals; Benthos; Bibby_etal_08; Bicarbonate ion; Blood cells; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Eosinophil cells, absolute numbers; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; EXP; Experiment; Experimental treatment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Immunology/Self-protection; Laboratory experiment; Mollusca; Mytilus edulis; Neubauer haemocytometer; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Phagocytosed particles, number per protein mass; pH meter (Mettler Toledo InLab 413 SG); Salinity; Single species; SpectraMax microplate reader (Molecular Devices); Superoxyde dismutase change, number per protein mass; Temperate; Temperature, water; Tetra Con 325 salinity and temperature probe
    Type: Dataset
    Format: text/tab-separated-values, 6124 data points
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  • 4
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    PANGAEA
    In:  Supplement to: Small, Daniel; Calosi, Piero; White, Daniel; Spicer, John I; Widdicombe, Stephen (2010): Impact of medium-term exposure to CO2 enriched seawater on the physiological functions of the velvet swimming crab Necora puber. Aquatic Biology, 10(1), 11-21, https://doi.org/10.3354/ab00266
    Publication Date: 2024-03-15
    Description: Ocean acidification (OA) is predicted to play a major role in shaping species biogeography and marine biodiversity over the next century. We tested the effect of medium-term exposure to OA (pH 8.00, 7.30 and 6.70 for 30 d) on acid-base balance in the decapod crab Necora puber-a species that is known to possess good extracellular buffering ability during short-term exposure to hypercapnic conditions. To determine if crabs undergo physiological trade-offs in order to buffer their haemolymph, we characterised a number of fundamental physiological functions, i.e. metabolic rate, tolerance to heat, carapace and chelae [Ca2+] and [Mg2+], haemolymph [Ca2+] and [Mg2+], and immune response in terms of lipid peroxidation. Necora puber was able to buffer changes to extracellular pH over 30 d exposure to hypercapnic water, with no evidence of net shell dissolution, thus demonstrating that HCO3- is actively taken up from the surrounding water. In addition, tolerance to heat, carapace mineralization, and aspects of immune response were not affected by hypercapnic conditions. In contrast, whole-animal O2uptake significantly decreased with hypercapnia, while significant increases in haemolymph [Ca2+] and [Mg2+] and chelae [Mg2+] were observed with hypercapnia. Our results confirm that most physiological functions in N. puber are resistant to low pH/hypercapnia over a longer period than previously investigated, although such resistance comes at the expenses of metabolic rates, haemolymph chemistry and chelae mineralization.
    Keywords: Acid-base regulation; Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Arthropoda; Atomic absorption spectrometer (Spectr AA 600, Varian); Automated CO2 analyzer (CIBA-Corning 965, UK); Benthic animals; Benthos; Bicarbonate ion; Bicarbonate ion, standard deviation; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Calcification/Dissolution; Calcite saturation state; Calcite saturation state, standard deviation; Calculated, see reference(s); Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, partial pressure, standard deviation; Coast and continental shelf; Comment; Conductivity meter (WTW, Weilheim, Gemany); EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Experimental treatment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Identification; Laboratory experiment; Necora puber; Necora puber, carapace, calcium; Necora puber, carapace, magnesium; Necora puber, chelae, calcium; Necora puber, chelae, magnesium; Necora puber, haemolymph, calcium ion; Necora puber, haemolymph, lipid peroxide; Necora puber, haemolymph, magnesium ion; Necora puber, haemolymph, partial pressure of carbon dioxide; Necora puber, haemolymph, pH; Necora puber, haemolymph, total carbon; Necora puber, mass; Necora puber, width; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Oxygen consumption; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; pH meter (Mettler Toledo, USA); Respiration; Salinity; Salinity, standard deviation; see reference(s); Sex; Single species; Strathkelvin oxygen electrode system; Temperate; Temperature, standard deviation; Temperature, water; Thermal limit
    Type: Dataset
    Format: text/tab-separated-values, 1687 data points
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  • 5
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    PANGAEA
    In:  Supplement to: Cripps, Gemma; Widdicombe, Stephen; Spicer, John I; Findlay, Helen S (2013): Biological impacts of enhanced alkalinity in Carcinus maenas. Marine Pollution Bulletin, 71(1-2), 190-198, https://doi.org/10.1016/j.marpolbul.2013.03.015
    Publication Date: 2024-03-15
    Description: Further steps are needed to establish feasible alleviation strategies that are able to reduce the impacts of ocean acidification, whilst ensuring minimal biological side-effects in the process. Whilst there is a growing body of literature on the biological impacts of many other carbon dioxide reduction techniques, seemingly little is known about enhanced alkalinity. For this reason, we investigated the potential physiological impacts of using chemical sequestration as an alleviation strategy. In a controlled experiment, Carcinus maenas were acutely exposed to concentrations of Ca(OH)2 that would be required to reverse the decline in ocean surface pH and return it to pre-industrial levels. Acute exposure significantly affected all individuals' acid-base balance resulting in slight respiratory alkalosis and hyperkalemia, which was strongest in mature females. Although the trigger for both of these responses is currently unclear, this study has shown that alkalinity addition does alter acid-base balance in this comparatively robust crustacean species.
    Keywords: Acid-base regulation; Alkalinity, total; Animalia; Aragonite saturation state; Arthropoda; Benthic animals; Benthos; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calcium hydroxide; Calcium ion; Calcium ion, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Carcinus maenas; Coast and continental shelf; EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Haemolymph, bicarbonate ion; Haemolymph, partial pressure of carbon dioxide; Haemolymph, pH; Haemolymph, potassium ion; Haemolymph, total carbon dioxide; Identification; Laboratory experiment; Magnesium ion; Magnesium ion, standard deviation; Mountbatten_Plymouth_Devon; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Osmolality; Osmolality, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Potassium ion; Potassium ion, standard deviation; Potentiometric; Potentiometric titration; Salinity; Sex; Single species; Sodium ion; Sodium ion, standard deviation; Species; Stage; Temperate; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 3593 data points
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  • 6
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    PANGAEA
    In:  Supplement to: Guscelli, Ella; Spicer, John I; Calosi, Piero (2019): The importance of inter‐individual variation in predicting species' responses to global change drivers. Ecology and Evolution, https://doi.org/10.1002/ece3.4810
    Publication Date: 2024-03-15
    Description: Inter‐individual variation in phenotypic traits has long been considered as "noise" rather than meaningful phenotypic variation, with biological studies almost exclusively generating and reporting average responses for populations and species' aver‐ age responses. Here, we compare the use of an individual approach in the investigation of extracellular acid-base regulation by the purple sea urchin Paracentrotus lividus challenged with elevated pCO2 and temperature conditions, with a more traditional approach which generates and formally compares mean values. We detected a high level of inter‐individual variation in acid-base regulation parameters both within and between treatments. Comparing individual and mean values for the first (apparent) dissociation constant of the coelomic fluid for individual sea urchins resulted in substantially different (calculated) acid-base parameters, and models with stronger statistical support. While the approach using means showed that coelomic pCO2 was influenced by seawater pCO2 and temperature combined, the individual approach indicated that it was in fact seawater temperature in isolation that had a significant effect on coelomic pCO2. On the other hand, coelomic [HCO3−] appeared to be primarily affected by seawater pCO2, and less by seawater temperature, irrespective of the approach adopted. As a consequence, we suggest that individual variation in physiological traits needs to be considered, and where appropriate taken into ac‐ count, in global change biology studies. It could be argued that an approach reliant on mean values is a "procedural error." It produces an artefact, that is, a population's mean phenotype. While this may allow us to conduct relatively simple statistical analyses, it will not in all cases reflect, or take into account, the degree of (physiological) diversity present in natural populations.
    Keywords: Acid-base regulation; Alkalinity, total; Alkalinity, total, standard error; Animalia; Aragonite saturation state; Aragonite saturation state, standard error; Benthic animals; Benthos; Bicarbonate ion; Bicarbonate ion, standard error; Calcite saturation state; Calcite saturation state, standard error; Calculated using CO2calc; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard error; Carbonate ion; Carbonate ion, standard error; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Coelomic fluid, bicarbonate ion; Coelomic fluid, carbon, inorganic, dissolved; Coelomic fluid, partial pressure of carbon dioxide; Coelomic fluid, pH; Constant; Containers and aquaria (20-1000 L or 〈 1 m**2); DATE/TIME; Day of experiment; Diameter; Dunmanus_Bay; Echinodermata; EXP; Experiment; Experiment duration; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Height; Identification; Individuals; Laboratory experiment; Mortality/Survival; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Oxygen, dissolved; Oxygen, dissolved, standard error; Paracentrotus lividus; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error; pH; pH, standard error; Potentiometric; Potentiometric titration; Registration number of species; Salinity; Salinity, standard error; Single species; Species; Temperate; Temperature; Temperature, water; Temperature, water, standard error; Treatment; Type; Uniform resource locator/link to reference; Volume; Wet mass
    Type: Dataset
    Format: text/tab-separated-values, 13132 data points
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  • 7
    Publication Date: 2024-02-16
    Keywords: Bicarbonate; Carbon dioxide, total; Constant; Identification; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 1690 data points
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  • 8
    Publication Date: 2024-02-16
    Keywords: Alkalinity, total; Aragonite saturation state; Bicarbonate ion; Calcite saturation state; Carbon, inorganic, dissolved; Carbonate ion; DATE/TIME; Day of experiment; Oxygen; Partial pressure of carbon dioxide (ambient atmosphere); pH; Salinity; Temperature, water; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 546 data points
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  • 9
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    PANGAEA
    In:  Supplement to: Ellis, Robert P; Spicer, John I; Byrne, Jonathan J; Sommer, Ulf; Viant, Mark R; White, Daniel; Widdicombe, Steve (2014): 1H NMR Metabolomics Reveals Contrasting Response by Male and Female Mussels Exposed to Reduced Seawater pH, Increased Temperature, and a Pathogen. Environmental Science & Technology, 48(12), 7044-7052, https://doi.org/10.1021/es501601w
    Publication Date: 2024-03-15
    Description: Human activities are fundamentally altering the chemistry of the world's oceans. Ocean acidification (OA) is occurring against a background of warming and an increasing occurrence of disease outbreaks, posing a significant threat to marine organisms, communities, and ecosystems. In the current study, 1H NMR spectroscopy was used to investigate the response of the blue mussel, Mytilus edulis, to a 90-day exposure to reduced seawater pH and increased temperature, followed by a subsequent pathogenic challenge. Analysis of the metabolome revealed significant differences between male and female organisms. Furthermore, males and females are shown to respond differently to environmental stress. While males were significantly affected by reduced seawater pH, increased temperature, and a bacterial challenge, it was only a reduction in seawater pH that impacted females. Despite impacting males and females differently, stressors seem to act via a generalized stress response impacting both energy metabolism and osmotic balance in both sexes. This study therefore has important implications for the interpretation of metabolomic data in mussels, as well as the impact of environmental stress in marine invertebrates in general.
    Keywords: Alkalinity, total; Alkalinity, total, standard error; Animalia; Aragonite saturation state; Aragonite saturation state, standard error; Benthic animals; Benthos; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calcite saturation state, standard error; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Individuals; Laboratory experiment; Mollusca; Mortality; Mortality/Survival; Mytilus edulis; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error; pH; pH, standard error; Potentiometric; Potentiometric titration; Salinity; Salinity, standard error; Single species; Species; Temperate; Temperature; Temperature, water; Temperature, water, standard error
    Type: Dataset
    Format: text/tab-separated-values, 290 data points
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  • 10
    Publication Date: 2024-03-15
    Keywords: Abundance per area; Acid-base regulation; Alkalinity, total; Animalia; Aragonite saturation state; Arbacia lixula; Area/locality; Benthic animals; Benthos; Bicarbonate ion; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calcium; Calcium, standard error; Calcium ion; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; CO2 vent; Coast and continental shelf; Coelomic fluid, bicarbonate ion; Coelomic fluid, carbon, inorganic, dissolved; Coelomic fluid, partial pressure of carbon dioxide; Coelomic fluid, pH; Echinodermata; EXP; Experiment; Field experiment; Figure; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Levante_Bay_Vulcano; Magnesium; Magnesium, standard error; Magnesium ion; Mediterranean Sea; OA-ICC; Ocean Acidification International Coordination Centre; Paracentrotus lividus; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Potassium, standard error; Potassium ion; Potentiometric; Replicate; Salinity; Single species; Sodium, standard error; Sodium ion; Species; Strontium; Strontium, standard error; Table; Temperate; Temperature, water; Temperature, water, standard deviation; Time in days; Time in hours; Tissues; Treatment; UKOA; United Kingdom Ocean Acidification research programme
    Type: Dataset
    Format: text/tab-separated-values, 8940 data points
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