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  • 1
    Publication Date: 2014-06-13
    Description: DYRK1A promotes dopaminergic neuron survival in the developing brain and in a mouse model of Parkinson’s disease Cell Death and Disease 5, e1289 (June 2014). doi:10.1038/cddis.2014.253 Authors: M J Barallobre, C Perier, J Bové, A Laguna, J M Delabar, M Vila & M L Arbonés
    Electronic ISSN: 2041-4889
    Topics: Biology , Medicine
    Published by Springer Nature
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  • 2
    Publication Date: 2015-06-22
    Description: Understanding the driving forces behind protein evolution requires the ability to correlate the molecular impact of mutations with organismal fitness. To address this issue, we employ here metallo-β-lactamases as a model system, which are Zn(II) dependent enzymes that mediate antibiotic resistance. We present a study of all the possible evolutionary pathways leading to a metallo-β-lactamase variant optimized by directed evolution. By studying the activity, stability and Zn(II) binding capabilities of all mutants in the preferred evolutionary pathways, we show that this local fitness landscape is strongly conditioned by epistatic interactions arising from the pleiotropic effect of mutations in the different molecular features of the enzyme. Activity and stability assays in purified enzymes do not provide explanatory power. Instead, measurement of these molecular features in an environment resembling the native one provides an accurate description of the observed antibiotic resistance profile. We report that optimization of Zn(II) binding abilities of metallo-β-lactamases during evolution is more critical than stabilization of the protein to enhance fitness. A global analysis of these parameters allows us to connect genotype with fitness based on quantitative biochemical and biophysical parameters.
    Print ISSN: 0737-4038
    Electronic ISSN: 1537-1719
    Topics: Biology
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  • 3
    Publication Date: 2015-01-21
    Description: Relative sea-level rise has been a major factor driving the evolution of reef systems during the Holocene. Most models of reef evolution suggest that reefs preferentially grow vertically during rising sea level then laterally from windward to leeward, once the reef flat reaches sea level. Continuous lagoonal sedimentation ("bucket fill") and sand apron progradation eventually lead to reef systems with totally filled lagoons. Lagoonal infilling of One Tree Reef (southern Great Barrier Reef) through sand apron accretion was examined in the context of late Holocene relative sea-level change. This analysis was conducted using sedimentological and digital terrain data supported by 50 radiocarbon ages from fossil microatolls, buried patch reefs, foraminifera and shells in sediment cores, and recalibrated previously published radiocarbon ages. This data set challenges the conceptual model of geologically continuous sediment infill during the Holocene through sand apron accretion. Rapid sand apron accretion occurred between 6000 and 3000 calibrated yr before present B.P. (cal. yr B.P.); followed by only small amounts of sedimentation between 3000 cal. yr B.P. and present, with no significant sand apron accretion in the past 2 k.y. This hiatus in sediment infill coincides with a sea-level fall of ~1–1.3 m during the late Holocene (ca. 2000 cal. yr B.P.), which would have caused the turn-off of highly productive live coral growth on the reef flats currently dominated by less productive rubble and algal flats, resulting in a reduced sediment input to back-reef environments and the cessation in sand apron accretion. Given that relative sea-level variations of ~1 m were common throughout the Holocene, we suggest that this mode of sand apron development and carbonate production is applicable to most reef systems.
    Print ISSN: 0091-7613
    Electronic ISSN: 1943-2682
    Topics: Geosciences
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  • 4
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2013-11-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Carboneras, C -- Walton, P -- Vila, M -- New York, N.Y. -- Science. 2013 Nov 22;342(6161):930-1. doi: 10.1126/science.342.6161.930-b.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Royal Society for the Protection of Birds, The Lodge, Sandy, Bedfordshire, SG19 2DL, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24264976" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Europe ; European Union ; Introduced Species/economics/*legislation & jurisprudence/statistics & numerical ; data ; Social Control, Formal
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2006-10-28
    Description: Dimethylsulfoniopropionate (DMSP) accounts for most of the organic sulfur fluxes from primary to secondary producers in marine microbial food webs. Incubations of natural communities and axenic cultures with radio-labeled DMSP showed that dominant phytoplankton groups of the ocean, the unicellular cyanobacteria Prochlorococcus and Synechococcus and diatoms, as well as heterotrophic bacteria take up and assimilate DMSP sulfur, thus diverting a proportion of plankton-produced organic sulfur from emission into the atmosphere.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Vila-Costa, Maria -- Simo, Rafel -- Harada, Hyakubun -- Gasol, Josep M -- Slezak, Doris -- Kiene, Ronald P -- New York, N.Y. -- Science. 2006 Oct 27;314(5799):652-4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Departament de Biologia Marina i Oceanografia, Institut de Ciencies del Mar (CSIC), Pg Maritim de la Barceloneta 37-49, 08003 Barcelona, Catalonia, Spain. mariavila@icm.csic.es〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/17068265" target="_blank"〉PubMed〈/a〉
    Keywords: Bacteria/metabolism ; Betaine/metabolism ; Biological Transport ; Cell Membrane/metabolism ; Diatoms/metabolism ; Food Chain ; Light ; Oceans and Seas ; Phytoplankton/*metabolism ; Prochlorococcus/metabolism ; *Seawater/microbiology ; Sulfonium Compounds/*metabolism ; Sulfur/metabolism ; Synechococcus/metabolism
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 6
    Publication Date: 2016-05-17
    Description: The pathways by which alien species are introduced to new regions fall into six broad classes: deliberate release ; escape from captivity; contaminant of a commodity; stowaway on a transport vector; via an infrastructure corridor (without which spread would not be possible) or unaided from other invaded regions (Hulme et al. 2008). However, Gilroy et al. (2016) argue that species dispersing naturally, through the infrastructure corridor or unaided pathway, should be classed as native rather than alien. We contend their proposal is not only unworkable but also unwise. This article is protected by copyright. All rights reserved
    Print ISSN: 1755-263X
    Electronic ISSN: 1755-263X
    Topics: Biology
    Published by Wiley on behalf of The Society for Conservation Biology.
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  • 7
    Publication Date: 2013-07-26
    Description: Species capable of regenerating lost body parts occur throughout the animal kingdom, yet close relatives are often regeneration incompetent. Why in the face of 'survival of the fittest' some animals regenerate but others do not remains a fascinating question. Planarian flatworms are well known and studied for their ability to regenerate from minute tissue pieces, yet species with limited regeneration abilities have been described even amongst planarians. Here we report the characterization of the regeneration defect in the planarian Dendrocoelum lacteum and its successful rescue. Tissue fragments cut from the posterior half of the body of this species are unable to regenerate a head and ultimately die. We find that this defect originates during the early stages of head specification, which require inhibition of canonical Wnt signalling in other planarian species. Notably, RNA interference (RNAi)-mediated knockdown of Dlac-beta-catenin-1, the Wnt signal transducer, restored the regeneration of fully functional heads on tail pieces, rescuing D. lacteum's regeneration defect. Our results demonstrate the utility of comparative studies towards the reactivation of regenerative abilities in regeneration-deficient animals. Furthermore, the availability of D. lacteum as a regeneration-impaired planarian model species provides a first step towards elucidating the evolutionary mechanisms that ultimately determine why some animals regenerate and others do not.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Liu, S-Y -- Selck, C -- Friedrich, B -- Lutz, R -- Vila-Farre, M -- Dahl, A -- Brandl, H -- Lakshmanaperumal, N -- Henry, I -- Rink, J C -- England -- Nature. 2013 Aug 1;500(7460):81-4. doi: 10.1038/nature12414. Epub 2013 Jul 24.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 108, 01307 Dresden, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23883932" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Body Patterning ; Head/*growth & development/physiology ; Models, Animal ; Molecular Sequence Data ; Planarians/*anatomy & histology/*physiology ; *Regeneration ; Tail/growth & development ; Wnt Proteins/metabolism ; Wnt Signaling Pathway ; beta Catenin/biosynthesis/deficiency/genetics/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 8
    Publication Date: 2009-04-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hulme, Philip E -- Pysek, Petr -- Nentwig, Wolfgang -- Vila, Montserrat -- New York, N.Y. -- Science. 2009 Apr 3;324(5923):40-1. doi: 10.1126/science.1171111.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Bio-Protection Research Centre, Lincoln University, Post Office Box 84, Canterbury, New Zealand. philip.hulme@lincoln.ac.nz〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19342572" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biodiversity ; Conservation of Natural Resources/*legislation & jurisprudence ; *Ecosystem ; Europe ; *European Union ; *Government Regulation ; Legislation as Topic ; Public Policy
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 9
    Publication Date: 2016-10-19
    Description: Electrode optimization in microbial fuel cells is a key issue to improve the power output and cell performance. Vertically aligned carbon nanotubes (VACNTs) grown on low cost stainless-steel mesh present an attractive approach to increase the cell performance while avoiding the use of expensive Pt-based materials. In comparison with non-aligned carbon nanotubes (NACNTs), VACNTs increase the oxygen reduction reaction taking place at the cathode by a factor of two. In addition, vertical alignment also increases the power density up to 2.5 times with respect to NACNTs. VACNTs grown at the anode can further improve the cell performance by increasing the electrode surface area and thus the electron transfer between bacteria and the electrode. The maximum power density obtained using VACNTs was 14 mW/m 2 and 160 mV output voltage.
    Print ISSN: 0003-6951
    Electronic ISSN: 1077-3118
    Topics: Physics
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  • 10
    Publication Date: 2004-01-01
    Print ISSN: 0047-2425
    Electronic ISSN: 1537-2537
    Topics: Energy, Environment Protection, Nuclear Power Engineering , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Published by Wiley
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