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  • 1
    Publication Date: 2012-07-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chown, S L -- Lee, J E -- Hughes, K A -- Barnes, J -- Barrett, P J -- Bergstrom, D M -- Convey, P -- Cowan, D A -- Crosbie, K -- Dyer, G -- Frenot, Y -- Grant, S M -- Herr, D -- Kennicutt, M C 2nd -- Lamers, M -- Murray, A -- Possingham, H P -- Reid, K -- Riddle, M J -- Ryan, P G -- Sanson, L -- Shaw, J D -- Sparrow, M D -- Summerhayes, C -- Terauds, A -- Wall, D H -- New York, N.Y. -- Science. 2012 Jul 13;337(6091):158-9. doi: 10.1126/science.1222821.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Centre for Invasion Biology, Stellenbosch University, Matieland, South Africa. steven.chown@monash.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22798586" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antarctic Regions ; Climate Change ; *Conservation of Natural Resources/trends ; *Ecosystem ; Forecasting ; Human Activities ; Humans ; Public Policy ; Travel
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2013-11-01
    Description: To understand the processes that maintain genetic diversity is a long-standing challenge in evolutionary biology, with implications for predicting disease resistance, response to environmental change, and population persistence. Simple population genetic models are not sufficient to explain the high levels of genetic diversity sometimes observed in ecologically important traits. In guppies (Poecilia reticulata), male colour pattern is both diverse and heritable, and is arguably one of the most extreme examples of morphological polymorphism known. Negative frequency-dependent selection (NFDS), a form of selection in which genotypes are favoured when they are rare, can potentially maintain such extensive polymorphism, but few experimental studies have confirmed its operation in nature. Here we use highly replicated experimental manipulations of natural populations to show that males with rare colour patterns have higher reproductive fitness, demonstrating NFDS mediated by sexual selection. Rare males acquired more mates and sired more offspring compared to common males and, as previously reported, had higher rates of survival. Orange colour, implicated in other studies of sexual selection in guppies, did predict male reproductive success, but only in one of three populations. These data support the hypothesis that NFDS maintains diversity in the colour patterns of male guppies through two selective agents, mates and predators. Similar field-based manipulations of genotype frequencies could provide a powerful approach to reveal the underlying ecological and behavioural mechanisms that maintain genetic and phenotypic diversity.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hughes, Kimberly A -- Houde, Anne E -- Price, Anna C -- Rodd, F Helen -- England -- Nature. 2013 Nov 7;503(7474):108-10. doi: 10.1038/nature12717. Epub 2013 Oct 30.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Science, 319 Stadium Drive, Florida State University, Tallahassee, Florida 32306, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24172904" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Animals, Wild/genetics/*physiology ; Female ; Fertility/genetics/physiology ; Genetic Fitness/genetics/*physiology ; Genetic Variation/genetics ; Male ; Mating Preference, Animal/*physiology ; Models, Animal ; Phenotype ; Pigmentation/genetics/physiology ; Poecilia/genetics/*physiology ; Predatory Behavior ; Rivers ; Selection, Genetic/genetics/physiology ; Survival Rate
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 1994-10-14
    Description: Inbreeding is known to lead to decreased survival and reproduction in captive populations of animals. It is also important to know whether inbreeding has deleterious effects in natural habitats. An estimate was made of the effects of inbreeding in white-footed mice, Peromyscus leucopus noveboracensis, derived from a wild population. This study demonstrates that inbreeding had a significant detrimental effect on the survivorship of mice reintroduced into a natural habitat. This effect was more severe than the effect observed in laboratory studies of the population.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Jimenez, J A -- Hughes, K A -- Alaks, G -- Graham, L -- Lacy, R C -- New York, N.Y. -- Science. 1994 Oct 14;266(5183):271-3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Sciences, University of Illinois-Chicago 60680.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/7939661" target="_blank"〉PubMed〈/a〉
    Keywords: Analysis of Variance ; Animals ; Body Weight ; Female ; *Inbreeding ; Likelihood Functions ; Male ; Peromyscus/genetics/*physiology ; Regression Analysis ; Survival Rate
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2015-09-04
    Description: Phenotypic plasticity is the capacity for an individual genotype to produce different phenotypes in response to environmental variation. Most traits are plastic, but the degree to which plasticity is adaptive or non-adaptive depends on whether environmentally induced phenotypes are closer or further away from the local optimum. Existing theories make conflicting predictions about whether plasticity constrains or facilitates adaptive evolution. Debate persists because few empirical studies have tested the relationship between initial plasticity and subsequent adaptive evolution in natural populations. Here we show that the direction of plasticity in gene expression is generally opposite to the direction of adaptive evolution. We experimentally transplanted Trinidadian guppies (Poecilia reticulata) adapted to living with cichlid predators to cichlid-free streams, and tested for evolutionary divergence in brain gene expression patterns after three to four generations. We find 135 transcripts that evolved parallel changes in expression within the replicated introduction populations. These changes are in the same direction exhibited in a native cichlid-free population, suggesting rapid adaptive evolution. We find 89% of these transcripts exhibited non-adaptive plastic changes in expression when the source population was reared in the absence of predators, as they are in the opposite direction to the evolved changes. By contrast, the remaining transcripts exhibiting adaptive plasticity show reduced population divergence. Furthermore, the most plastic transcripts in the source population evolved reduced plasticity in the introduction populations, suggesting strong selection against non-adaptive plasticity. These results support models predicting that adaptive plasticity constrains evolution, whereas non-adaptive plasticity potentiates evolution by increasing the strength of directional selection. The role of non-adaptive plasticity in evolution has received relatively little attention; however, our results suggest that it may be an important mechanism that predicts evolutionary responses to new environments.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ghalambor, Cameron K -- Hoke, Kim L -- Ruell, Emily W -- Fischer, Eva K -- Reznick, David N -- Hughes, Kimberly A -- England -- Nature. 2015 Sep 17;525(7569):372-5. doi: 10.1038/nature15256. Epub 2015 Sep 2.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, Colorado State University, Fort Collins, Colorado 80523, USA. ; Graduate Degree Program in Ecology, Colorado State University, Fort Collins, Colorado 80523, USA. ; Department of Biology, University of California, Riverside, California 92521, USA. ; Department of Biological Science, Florida State University, Tallahassee, Florida 32306-4295, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26331546" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Physiological/*genetics ; Animals ; *Biological Evolution ; Brain/metabolism ; Cichlids/physiology ; Female ; Fish Proteins/genetics ; Gene Expression Regulation/*genetics ; Genotype ; Male ; Models, Genetic ; Phenotype ; Poecilia/*genetics/physiology ; RNA, Messenger/analysis/genetics ; Rivers ; Selection, Genetic/genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Plant and soil 175 (1995), S. 301-309 
    ISSN: 1573-5036
    Keywords: Actinidia deliciosa A. Chev. Mill. ; age ; Malus pumila A. Chev. Mill. ; prunus persica (L.) Batsch. ; Pyrus serotina Rehder. ; root distribution ; root-length density ; Vitis vinifera L.
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract Measurements of root-length density (RLD) in a range of 31 apple, kiwifruit, peach, Asian pear and grape orchards were used to derive indices to describe the exploration and exploitation of rooting volumes. Orchards were of various ages and located on a range of soil types, geographic regions, management systems etc. Data were obtained from core samples of volume 1.66×10-4 m3 randomly taken within a “standard volume”, determined by average planting grids, of 2 m radius centred on tree stems, and 1 m depth. Root systems were described using an exploitation index, E(ϕ), and an exploration index, E(0). E(ϕ) is defined as the proportion of the soil volume which contains roots at RLD greater than or equal to some specified value, ϕ. E(0) is defined as the proportion of the soil volume which contains roots at any RLD greater than zero. These indices are dependent on sample size, as are all volumetric or soil-coring data. Estimates of E(0) for each orchard were obtained as the proportions of cores containing any RLD〉O and assessed for dependence on species. Peach trees had a significantly higher value of E(0), equal to almost 1.0, compared to the other four species where E(0) was approximately 0.8 (p≤0.01) or less. There was also some variation with age. E(0) was lower for very young plants which had not fully occupied the sampled soil volume. Exploration indices for woody roots increased with rootstock age but otherwise did not explain large differences in E(ϕ) between species for given ϕ values. For example at ϕ=0.05×104 m.m-3, E(ϕ) was approximately 0.45 for peach and kiwifruit, and 0.05 for apple, Asian pear and grape, whereas at ϕ=0.5×104 m.m-3 the corresponding values were 0.1 and almost zero. Negative exponential curves relating E(ϕ), scaled by dividing by E(0), to ϕ were fitted for each of the 31 orchards. Exponents for these curves, k, were significantly smaller for kiwifruit and peaches than apples, grapes and Asian pears (p≤0.05), and smaller for apples than grapes and Asian pears (p≤0.05). A larger k implies a rapid fall-off in E(ϕ) as ϕ increases. Although all five species contained zero and low RLD samples, only kiwifruit and peaches contained higher RLD values and consequently have higher mean RLD. This trend was consistent across all soils, regions, sampling dates, and plant ages. The analyses demonstrate that core sampling can give useful insights into macro-scale root-system distribution, such as the proportion of a soil volume explored and how it is exploited. If positions of core samples are noted during sampling using angular direction, depth and radial distance as spatial coordinates the method can be used to describe root-system structures.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Plant and soil 148 (1993), S. 211-221 
    ISSN: 1573-5036
    Keywords: age ; exploration ; Malus pumila A. Chev ; root-weight density ; spatial distribution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract The root systems of apple trees from five orchards ranging in age from 1.5-y to 14-y were sampled to depths of between one and two metres using soil cores. Although trees came from orchards which differed in soil-type, tree spacings and management, consistent patterns were found in root systems. In orchards of 4-y and older, roots of adjacent trees met so that soil volumes within the planting grids (i.e, tree spacings of approximately 5 m inter-row×4 m intra-row distances) were completely explored, although not completely occupied by roots. Mean root-length densities declined with depth for these orchards. In the 1.5-y orchard, roots from adjacent trees did not meet and root-length densities declined with radial distance from the stem as well as with depth. Root-length densities in the top 1 m ranged from zero to about 1.0 cm.cm−3 in all orchards and were highly variable. The proportions of core samples having zero values for root-length density were used to subdivide the root zone into volumes in which all samples contained roots, and volumes in which some samples had no roots. Results suggest that roots in an ‘average’ tree penetrate to at least one metre depth in all but very young orchards so that soil in this volume is fully explored. Volumes filled by roots and volumes occupied at any particular root-length density appear to reach a maximum at about 4 years. Volumes of soil occupied at any particular root-length density were equal in all orchards older than 4 years. This suggests that root growth was balanced by root death. In contrast woody roots continue to accumulate with time.
    Type of Medium: Electronic Resource
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  • 7
  • 8
    Publication Date: 1996-06-11
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 9
    Publication Date: 2002-10-17
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 10
    Publication Date: 1996-01-09
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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