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  • 1
    Publication Date: 2023-06-02
    Keywords: Area; BayofBrest; bivalves; Chlorophyll a; Chlorophyll a, standard deviation; Code; Counting, microscope; DATE/TIME; DEPTH, water; European flat oyster; Experimental treatment; Field experiment; Handheld Multiparameter Instrument; Hatchery; marine; Orientation; Ostrea edulis, larvae; Restoration of the European oyster (Ostrea edulis) in the German North Sea: Development and practical testing of methods and approaches for a sustainable population recovery; RESTORE; Roz Bank, Daoulas Cove, Bay of Brest, France; Salinity; Salinity, standard deviation; Settlement; Side; Substrate type; Temperature, water; Temperature, water, standard deviation; Turbidity, standard deviation; Turbidity (Nephelometric turbidity unit)
    Type: Dataset
    Format: text/tab-separated-values, 1668 data points
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  • 2
    Publication Date: 2023-07-18
    Description: The dataset compiles counts of larvae of the European flat oyster Ostrea edulis, settled on various substrates under three different experimental conditions. The data was collected within the AWI-RESTORE project (Alfred-Wegener-Institute, Germany), examining basic preconditions for successful restoration of the European flat oyster within the German Bight. The data is separated in three experimental setups: the columns for experiment 1 (hatchery/laboratory) include date stamp in ISO format, Latitude, Longitude, abiotic factors (Flow rate, temperature, salinity, pH, dissolved oxygen), substrate types, area and orientation as well as the count of settled larvae for each set-up. Data for experiment 2 (hatchery) include date stamp in ISO format, Latitude, Longitude, abiotic factors (Flow rate, temperature, salinity, pH), reef number, specifics of examined area and orientation as well as the count of settled larvae for each reef. Columns for experiment 3 (field) include date stamp in ISO format, Latitude, Longitude, abiotic factors (depth, temperature, salinity), chlorophyll concentration, substrate types, specifics and orientation as well as the count of settled larvae for each submerged substrate.
    Keywords: bivalves; European flat oyster; Hatchery; marine; Restoration of the European oyster (Ostrea edulis) in the German North Sea: Development and practical testing of methods and approaches for a sustainable population recovery; RESTORE; Settlement
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 3
    Publication Date: 2023-07-18
    Keywords: Area; Argenton en Landunvez, France; Basin; bivalves; Code; Counting, microscope; DATE/TIME; European flat oyster; Experimental treatment; Flow meter; Flow rate; Flow rate, standard deviation; Handheld Multiparameter Instrument; Hatchery; IfremerArgenton; Laboratory experiment; marine; Orientation; Ostrea edulis, larvae; Oxygen, dissolved; Oxygen, dissolved, standard deviation; pH; pH, standard deviation; Restoration of the European oyster (Ostrea edulis) in the German North Sea: Development and practical testing of methods and approaches for a sustainable population recovery; RESTORE; Ruler tape; Salinity; Salinity, standard deviation; Settlement; Side; Substrate type; Temperature, water; Temperature, water, standard deviation
    Type: Dataset
    Format: text/tab-separated-values, 3015 data points
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  • 4
    Publication Date: 2023-11-08
    Keywords: Area; bivalves; Counting, microscope; DATE/TIME; European flat oyster; experiment; Flow meter; Flow rate; Handheld Multiparameter Instrument; Hatchery; Image number/name; Laboratory experiment; marine; NovostreaBretagneSAS; Orientation; Ostrea edulis, larvae; pH; Restoration of the European oyster (Ostrea edulis) in the German North Sea: Development and practical testing of methods and approaches for a sustainable population recovery; RESTORE; Salinity; Sarzeau, France; Settlement; Substrate type; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 840 data points
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  • 5
    Publication Date: 2024-03-15
    Description: This study examined the physiological responses of the larval stages of Haliotis tuberculata, an economically important abalone, to combined temperature (17 °C and 19 °C) and pH (ambient pH and −0.3 units, i.e., +200% increase in seawater acidity) in a full factorial experiment. Tissue organogenesis, shell formation, and shell length significantly declined due to low pH. High temperature significantly increased the proportion of fully shelled larvae at 24 h post-fertilization (hpf), but increased the proportion of unshelled larvae at 72 hpf. Percentage of swimming larvae at 24 hpf, 72 hpf and 96 hpf significantly declined due to high temperature, but not because of low pH. Larval settlement increased under high temperature, but was not affected by low pH. Despite the fact that no interaction between temperature and pH was observed, the results provide additional evidence on the sensitivity of abalone larvae to both low pH and high temperature. This may have negative consequences for the persistence of abalone populations in natural and aquaculture environments in the near future.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Angular velocity; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Behaviour; Bicarbonate ion; Bicarbonate ion, standard deviation; Birefringence intensity; Calcification/Dissolution; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Development; Distance; Egg hatching success; EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Growth/Morphology; Haliotis tuberculata; Identification; Individual respiration rate; Laboratory experiment; Larvae, swimming; Larval development; Meander; Mobility; Mollusca; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; Percentage; pH; pH, standard deviation; Plouguerneau; Potentiometric; Potentiometric titration; Registration number of species; Replicate; Reproduction; Respiration; Salinity; Salinity, standard deviation; Score; Shell length; Single species; Species; Subject; Temperate; Temperature; Temperature, water; Temperature, water, standard deviation; Time in hours; Treatment: pH; Treatment: temperature; Type; Uniform resource locator/link to reference; Velocity; Zooplankton
    Type: Dataset
    Format: text/tab-separated-values, 158754 data points
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  • 6
    Publication Date: 2024-03-15
    Description: We evaluated the recovery capacity of a model calcifier, the Pacific oyster Crassostrea gigas. We exposed juveniles to 15 pH conditions between 6.4 and 7.8 for 14 days. Oyster growth was retarded below pH 7.1 while shells were corroded at pH 6.5. We then placed the oysters under ambient pH 〉 7.8 for 42 days. The oysters from each pH condition were briefly dried with absorbent paper and the total wet body weight was measured with a Mettler precision balance (Mettler-Toledo) during the exposure period on days 6, 10 and 14, and then during the ambient pH period on days 4, 7, 9, 11, 14, 18, 22, 28, 36 and 42.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthic animals; Bicarbonate ion; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using seacarb; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Containers and aquaria (20-1000 L or 〈 1 m**2); Crassostrea gigas; Experiment day; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Laboratory experiment; Laboratory strains; Mass; Mollusca; Not applicable; OA-ICC; Ocean Acidification International Coordination Centre; Oxygen saturation, standard deviation; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Potentiometric titration; Salinity; Salinity, standard deviation; Single species; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Temperature, water; Temperature, water, standard deviation; Treatment; Type of study
    Type: Dataset
    Format: text/tab-separated-values, 6720 data points
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  • 7
    Publication Date: 2024-03-27
    Description: We deciphered the reaction norms of two oyster species living in contrasting habitats: the intertidal oyster Crassostrea gigas and the subtidal flat oyster Ostrea edulis, which are two economically and ecologically valuable species in temperate ecosystems. Six-month-old oysters of each species were exposed in common garden tanks for 48 days to a pH gradient ranging from 7.7 to 6.4 (total scale). The database contains data from: 1. seawater physico-chemical parameters during the acclimation period, 2. oyster survival during the acclimation period, 3. biometrics of oyster species, 4. shell coloration of oyster species, 5. composition of the membrane fatty acids of oyster species, 6. temporal evolution of the phytoplankton cell volume, 7. fatty acid composition of phytoplankton, 8. energy reserves of oyster species.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Bay_of_Brest; Behaviour; Benthic animals; Benthos; Bicarbonate ion; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using seacarb; Calculated using seacarb after Nisumaa et al. (2010); Carbohydrates, per unit dry mass; Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cell biovolume; Coast and continental shelf; Code; Containers and aquaria (20-1000 L or 〈 1 m**2); Crassostrea gigas; Day of experiment; EXP; Experiment; Fatty acid, common name; Fatty acids; Figure; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gray level; Growth/Morphology; Growth rate; Identification; Laboratory experiment; Mass; Mollusca; Mortality/Survival; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Ostrea edulis; Other studied parameter or process; Oxygen, dissolved; Oxygen, dissolved, standard deviation; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Potentiometric; Potentiometric titration; Proteins, total; Ratio; Salinity; Salinity, standard deviation; Shell, mass; Shell length; Single species; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Temperate; Temperature, water; Temperature, water, standard deviation; Treatment: pH; Type of study; Wet mass
    Type: Dataset
    Format: text/tab-separated-values, 309590 data points
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  • 8
    Publication Date: 2024-03-15
    Description: Ocean acidification and warming (OAW) are pressing contemporary issues affecting marine life and specifically calcifying organisms. Here, we investigated the direct effects of OAW on life-history traits of the Pacific oyster Crassostrea gigas, the most cultivated bivalve species worldwide. We also tested whether parental conditioning history shaped the phenotypic characters of their progenies (intergenerational carryover effects). Adult oysters and their offspring were exposed to two temperatures (18°C, +3°C) under ambient pH conditions or under an end-of-century acidification scenario (−0.33 pH unit). In adults, we monitored standard biometric and reproductive parameters, stress response by quantifying neuroendocrine metabolites and gamete quality. In larvae, we measured hatching rate, size, biochemical quality, and behavior. We found that reducing pH reduced growth rate and activated the serotonin system, but increasing temperature attenuated these effects. There was no effect of pH on reproduction at either temperature, and no intergenerational carryover effects. Larval characteristics were similar between treatments, regardless of parental conditioning history. Thus, the Pacific oyster seems robust to changes in pH, and increasing temperature is not an aggravating factor. We emphasize that the use of neuroendocrine indicators holds promise for revealing sublethal impacts of environmental changes.
    Keywords: 5-hydroxyindoleacetic acid; 5-hydroxyindoleacetic acid/5-hydroxytryptamine ratio; 5-hydroxytryptamine; Acceleration; Alkalinity, total; all-cis-4,7,10,13,16,19-Docosahexaenoic acid of total fatty acids; all-cis-5,8,11,14,17-Eicosapentaenoic acid of total fatty acids; all-cis-5,8,11,14-Eicosatetraenoic acid of total fatty acids; Angle; Angular velocity; Animalia; Aragonite saturation state; Behaviour; Benthic animals; Benthos; Bicarbonate ion; Birefringence, greyscale score; Bottles or small containers/Aquaria (〈20 L); Calcification/Dissolution; Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Crassostrea gigas; Date; Distance; Dopamine; Fatty acid content; Fatty acids, unsaturation index; Figure; Frequency; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); gamma-Aminobutyric acid; Glutamate; Gonad area; Growth/Morphology; Hatching rate; Identification; Ingestion rate; Laboratory experiment; Larvae; Mass; Mollusca; Motile sperm, speed; Motility; Noradrenaline; North Atlantic; Number; OA-ICC; Ocean Acidification International Coordination Centre; Oocyte, diameter; Oocytes; Other studied parameter or process; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; Percentage; pH; Potentiometric; Potentiometric titration; Replicate; Reproduction; Salinity; Sex; Shell, mass; Shell height; Shell length; Single species; Species, unique identification; Species, unique identification (Semantic URI); Species, unique identification (URI); Sperm concentration; Sperm motility; Standard deviation; Temperate; Temperature; Temperature, water; Time in days; Time in seconds; Treatment; Type; Velocity; Volume; Zooplankton
    Type: Dataset
    Format: text/tab-separated-values, 142731 data points
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  • 9
  • 10
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