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  • 1
    facet.materialart.
    Unknown
    PANGAEA
    In:  Supplement to: Park, K T; Lee, Kitack; Shin, Kyoungsoon; Yang, Eun Jin; Hyun, Bonggil; Kim, Ja-Myung; Noh, Jae Hoon; Kim, Miok; Kong, Bokyung; Choi, Dong Han; Choi, Su-Jin; Jang, Pung-Guk; Jeong, Hae Jin (2014): Direct Linkage between Dimethyl Sulfide Production and Microzooplankton Grazing, Resulting from Prey Composition Change under High Partial Pressure of Carbon Dioxide Conditions. Environmental Science & Technology, 48(9), 4750-4756, https://doi.org/10.1021/es403351h
    Publication Date: 2024-03-15
    Description: Oceanic dimethyl sulfide (DMS) is the enzymatic cleavage product of the algal metabolite dimethylsulfoniopropionate (DMSP) and is the most abundant form of sulfur released into the atmosphere. To investigate the effects of two emerging environmental threats (ocean acidification and warming) on marine DMS production, we performed a large-scale perturbation experiment in a coastal environment. At both ambient temperature and 2 °C warmer, an increase in partial pressure of carbon dioxide (pCO2) in seawater (160-830 ppmv pCO2) favored the growth of large diatoms, which outcompeted other phytoplankton species in a natural phytoplankton assemblage and reduced the growth rate of smaller, DMSP-rich phototrophic dinoflagellates. This decreased the grazing rate of heterotrophic dinoflagellates (ubiquitous micrograzers), resulting in reduced DMS production via grazing activity. Both the magnitude and sign of the effect of pCO2 on possible future oceanic DMS production were strongly linked to pCO2-induced alterations to the phytoplankton community and the cellular DMSP content of the dominant species and its association with micrograzers.
    Keywords: 19-Hexanoyloxyfucoxanthin; Alexandrium sp.; Alkalinity, total; Alloxanthin; Ammonia; Aragonite saturation state; Behaviour; Bicarbonate ion; Biomass; Calcite saturation state; Calculated; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, organic, dissolved; Carbon, organic, particulate; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cell density; Cerataulina pelagica; Chlorophyll a; Chlorophyll b; Coast and continental shelf; Community composition and diversity; Date; Dimethyl sulfide; Dimethylsulfoniopropionate, particulate; Dimethylsulfoniopropionate lyase activity; Dimethylsulfoniopropionate lyase activity, standard deviation; Entire community; EXP; Experiment; Field experiment; Fucoxanthin; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Grazing rate; Grazing rate, standard error; Identification; Incubation duration; Jangmok; Mesocosm or benthocosm; Nitrate and Nitrite; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; Peridinin; pH; Phosphate; Primary production/Photosynthesis; Salinity; Silicate; Species; Temperate; Temperature; Temperature, water; Treatment; Zeaxanthin
    Type: Dataset
    Format: text/tab-separated-values, 29214 data points
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  • 2
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Annals of the New York Academy of Sciences 768 (1995), S. 0 
    ISSN: 1749-6632
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Natural Sciences in General
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: This study aimed to develop a novel multiplex polymerase chain reaction (PCR) primer set for the identification of seven probiotic Lactobacillus species such as Lactobacillus acidophilus, Lactobacillus delbrueckii, Lactobacillus casei, Lactobacillus gasseri, Lactobacillus plantarum, Lactobacillus reuteri and Lactobacillus rhamnosus. The primer set, comprising of seven specific and two conserved primers, was derived from the integrated sequences of 16S and 23S rRNA genes and their rRNA intergenic spacer region of each species. It was able to identify the seven target species with 93.6% accuracy, which exceeds that of the general biochemical methods. The phylogenetic analyses, using 16S rDNA sequences of the probiotic isolates, also provided further support that the results from the multiplex PCR assay were trustworthy. Taken together, we suggest that the multiplex primer set is an efficient tool for simple, rapid and reliable identification of seven Lactobacillus species.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: This study aimed at developing a novel multiplex polymerase chain reaction (PCR) primer set for identification of the potentially probiotic Bifidobacterium species B. adolescentis, B. animalis subsp. animalis (B. animalis), B. bifidum, B. breve, B. longum biovar infantis (B. infantis), B. animalis subsp. lactis B. lactis, B. longum biovar longum (B. longum) and B. pseudolongum. The primer set comprised specific and conserved primers and was derived from the integrated sequences of 16S and 23S rRNA genes and the rRNA intergenic spacer region (ISR) of each species. It could detect and identify type strains and isolates from pharmaceuticals or dairy products corresponding to the eight Bifidobacterium species with high specificity. It was also useful for screening of the related strains from natural sources such as the gastro-intestinal tract and feces. We suggest that the assay system from this study is an efficient tool for simple, rapid and reliable identification of Bifidobacterium species for which probiotic strains are known.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    s.l. ; Stafa-Zurich, Switzerland
    Key engineering materials Vol. 277-279 (Jan. 2005), p. 12-18 
    ISSN: 1013-9826
    Source: Scientific.Net: Materials Science & Technology / Trans Tech Publications Archiv 1984-2008
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Human skin substitutes are needed for implantation and wound repair based on the new concept of tissue engineering in combination with biomaterials and cell biological technology. However, failure sometimes occurs when the wound healing is delayed in vivo due to acute inflammation resulting from the early degradation of the transplanted biomaterials. Accordingly, the current study modified conventional biomaterials to overcome early degradation and strong inflammation. In a conventional skin substitute, the animal origin collagenous materials have aslight antigenicity as xenogenic materials, however, the modified method was able to obtain a low antigenicity and anti-inflammation effect using atelo-collagen and an amniotic component. The tyrosine content in the developed atelo-collagen, representing the antigenicity, was reduced from 0.590% to 0.046% based on an HPLC analysis. In addition, to reduce the inflammation and foreign material reaction, an amniotic component was applied to the atelo-collagen materials. While, toenhance the wound healing, the modified skin substitute was developed as a composite matrix of an atelo-collagen scaffold with an amniotic membrane component. A quantitative analysis of hEGF in the amniotic membrane was also performed using different processing methods. Finally, a tissueengineeredskin substitute was constructed by cultivating skin cells in the collagen scaffold attached to an amniotic membrane
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    s.l. ; Stafa-Zurich, Switzerland
    Key engineering materials Vol. 277-279 (Jan. 2005), p. 90-95 
    ISSN: 1013-9826
    Source: Scientific.Net: Materials Science & Technology / Trans Tech Publications Archiv 1984-2008
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Microfluidic devices are of considerable interest, since such technology offers greatpromise for the development of powerful and versatile miniaturized analyzers. Accordingly, the present work describes a microfluidic screening system that is composed of a microchip, hydrodynamic pumping unit and fluorescence detectors. To develop an assay for RNA-aminoglycoside interactions, microchips are designed and fabricated on a glass substrate, then flow simulations are performed in the microchannels. After optimizing the flow control and buffer composition for fluorescence-based biochemical assays, a fluorescently labeled aminoglycosideprobe and RNA are allowed to flow continuously to the main micro-channel based on hydrodynamic pumping and their interactions monitored by fluorescence quenching, which is reversed upon competition with other aminoglycosides. Consequently, the proposed device can serve as an integrated microfluidic platform for the high-throughput screening of high affinity antibiotics for RNA targets
    Type of Medium: Electronic Resource
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  • 7
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Biogeosciences 15 (2018): 5847-5889, doi:10.5194/bg-15-5847-2018.
    Description: Since the start of the industrial revolution, human activities have caused a rapid increase in atmospheric carbon dioxide (CO2) concentrations, which have, in turn, had an impact on climate leading to global warming and ocean acidification. Various approaches have been proposed to reduce atmospheric CO2. The Martin (or iron) hypothesis suggests that ocean iron fertilization (OIF) could be an effective method for stimulating oceanic carbon sequestration through the biological pump in iron-limited, high-nutrient, low-chlorophyll (HNLC) regions. To test the Martin hypothesis, 13 artificial OIF (aOIF) experiments have been performed since 1990 in HNLC regions. These aOIF field experiments have demonstrated that primary production (PP) can be significantly enhanced by the artificial addition of iron. However, except in the Southern Ocean (SO) European Iron Fertilization Experiment (EIFEX), no significant change in the effectiveness of aOIF (i.e., the amount of iron-induced carbon export flux below the winter mixed layer depth, MLD) has been detected. These results, including possible side effects, have been debated amongst those who support and oppose aOIF experimentation, and many questions concerning the effectiveness of scientific aOIF, environmental side effects, and international aOIF law frameworks remain. In the context of increasing global and political concerns associated with climate change, it is valuable to examine the validity and usefulness of the aOIF experiments. Furthermore, it is logical to carry out such experiments because they allow one to study how plankton-based ecosystems work by providing insight into mechanisms operating in real time and under in situ conditions. To maximize the effectiveness of aOIF experiments under international aOIF regulations in the future, we therefore suggest a design that incorporates several components. (1) Experiments conducted in the center of an eddy structure when grazing pressure is low and silicate levels are high (e.g., in the SO south of the polar front during early summer). (2) Shipboard observations extending over a minimum of  ∼ 40 days, with multiple iron injections (at least two or three iron infusions of  ∼ 2000kg with an interval of  ∼ 10–15 days to fertilize a patch of 300km2 and obtain a  ∼ 2nM concentration). (3) Tracing of the iron-fertilized patch using both physical (e.g., a drifting buoy) and biogeochemical (e.g., sulfur hexafluoride, photosynthetic quantum efficiency, and partial pressure of CO2) tracers. (4) Employment of neutrally buoyant sediment traps (NBST) and application of the water-column-derived thorium-234 (234Th) method at two depths (i.e., just below the in situ MLD and at the winter MLD), with autonomous profilers equipped with an underwater video profiler (UVP) and a transmissometer. (5) Monitoring of side effects on marine/ocean ecosystems, including production of climate-relevant gases (e.g., nitrous oxide, N2O; dimethyl sulfide, DMS; and halogenated volatile organic compounds, HVOCs), decline in oxygen inventory, and development of toxic algae blooms, with optical-sensor-equipped autonomous moored profilers and/or autonomous benthic vehicles. Lastly, we introduce the scientific aOIF experimental design guidelines for a future Korean Iron Fertilization Experiment in the Southern Ocean (KIFES).
    Description: This research was a part of the project titled the Korean Iron Fertilization Experiment in the Southern Ocean (KOPRI, PM 16060) funded by the Ministry of Oceans and Fisheries, Korea. This work was partly supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIP) (no. 2015R1C1A1A01052051); the Korea-Arctic Ocean Observing System project (K-AOOS) (KOPRI, 20160245) funded by the MOF, Korea; and the KOPRI project (PE18200). Alison M. Macdonald was supported by NOAA grant no. NA11OAR4310063 and internal WHOI funding.
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 8
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2017. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 44 (2017): 1474–1482, doi:10.1002/2016GL072124.
    Description: As the western North Pacific Ocean is located downwind of the source regions for spring Asian dust, it is an ideal location for determining the response of open waters to these events. Spatial analysis of spring Asian dust events from source regions to the western North Pacific, using long-term daily aerosol index data, revealed three different transport pathways supported by the westerly wind system: one passing across the northern East/Japan Sea (40°N–50°N), a second moving over the entire East/Japan Sea (35°N–55°N), and a third flowing predominantly over the Siberian continent (〉50°N). Our results indicate that strong spring Asian dust events can increase ocean primary productivity by more than 70% (〉2-fold increase in chlorophyll-a concentrations) compared to weak/nondust conditions. Therefore, attention should be paid to the recent downturn in the number of spring Asian dust events and to the response of primary production in the western North Pacific to this change.
    Description: Korean government (MSIP) Grant Numbers: 2015R1C1A1A01052051, NRF-C1ABA001-2011-0021064; Korea Polar Research Institute (KOPRI) Grant Number: PE17030; NOAA Grant Number: NA11OAR4310063; WHOI
    Description: 2017-08-15
    Keywords: Western North Pacific Ocean ; Asian dust events ; Ocean primary productivity
    Repository Name: Woods Hole Open Access Server
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  • 9
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lee, J., Kang, S. H., Yang, E. J., Macdonald, A. M., Joo, H. M., Park, J., Kim, K., Lee, G. S., Kim, J. H., Yoon, J. E., Kim, S. S., Lim, J. H., & Kim, I. N. Latitudinal distributions and controls of bacterial community composition during the summer of 2017 in western Arctic surface waters (from the Bering Strait to the Chukchi Borderland). Scientific Reports, 9(1), (2019): 16822, doi: 10.1038/s41598-019-53427-4.
    Description: The western Arctic Ocean is experiencing some of the most rapid environmental changes in the Arctic. However, little is known about the microbial community response to these changes. Employing observations from the summer of 2017, this study investigated latitudinal variations in bacterial community composition in surface waters between the Bering Strait and Chukchi Borderland and the factors driving the changes. Results indicate three distinctive communities. Southern Chukchi bacterial communities are associated with nutrient rich conditions, including genera such as Sulfitobacter, whereas the northern Chukchi bacterial community is dominated by SAR clades, Flavobacterium, Paraglaciecola, and Polaribacter genera associated with low nutrients and sea ice conditions. The frontal region, located on the boundary between the southern and northern Chukchi, is a transition zone with intermediate physical and biogeochemical properties; however, bacterial communities differed markedly from those found to the north and south. In the transition zone, Sphingomonas, with as yet undetermined ecological characteristics, are relatively abundant. Latitudinal distributions in bacterial community composition are mainly attributed to physical and biogeochemical characteristics, suggesting that these communities are susceptible to Arctic environmental changes. These findings provide a foundation to improve understanding of bacterial community variations in response to a rapidly changing Arctic Ocean.
    Description: This research was a part of the project titled the Korea-Arctic Ocean Observing System project (K-AOOS) (KOPRI, 20160245) funded by the Ministry of Oceans and Fisheries, Korea. This work was also supported by a grant from the National Institute of Fisheries Science in Republic of Korea (R2019024) and the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (NRF-2019R1F1A1051790&NRF-2019R1A4A1026423).
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 10
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Heo, J.-M., Kim, S.-S., Kang, S.-H., Yang, E. J., Park, K.-T., Jung, J., Cho, K.-H., Kim, J.-H., Macdonald, A. M., Yoon, J.-E., Kim, H.-R., Eom, S.-M., Lim, J.-H., & Kim, I.-N. N2O dynamics in the western Arctic Ocean during the summer of 2017. Scientific Reports, 11(1), (2021): 12589, https://doi.org/10.1038/s41598-021-92009-1.
    Description: The western Arctic Ocean (WAO) has experienced increased heat transport into the region, sea-ice reduction, and changes to the WAO nitrous oxide (N2O) cycles from greenhouse gases. We investigated WAO N2O dynamics through an intensive and precise N2O survey during the open-water season of summer 2017. The effects of physical processes (i.e., solubility and advection) were dominant in both the surface (0–50 m) and deep layers (200–2200 m) of the northern Chukchi Sea with an under-saturation of N2O. By contrast, both the surface layer (0–50 m) of the southern Chukchi Sea and the intermediate (50–200 m) layer of the northern Chukchi Sea were significantly influenced by biogeochemically derived N2O production (i.e., through nitrification), with N2O over-saturation. During summer 2017, the southern region acted as a source of atmospheric N2O (mean: + 2.3 ± 2.7 μmol N2O m−2 day−1), whereas the northern region acted as a sink (mean − 1.3 ± 1.5 μmol N2O m−2 day−1). If Arctic environmental changes continue to accelerate and consequently drive the productivity of the Arctic Ocean, the WAO may become a N2O “hot spot”, and therefore, a key region requiring continued observations to both understand N2O dynamics and possibly predict their future changes.
    Description: This research was a part of the project titled 'Korea-Arctic Ocean Warming and Response of Ecosystem (KOPRI, 1525011760)', funded by the MOF, Korea. This study was also supported by a grant from the National Research Foundation of Korea (NRF) funded by the Korean government (MSIT) (NRF-2019R1F1A1051790&NRF-2019R1A4A1026423). This work was also funded by a grant from the National Institute of Fisheries Science (R2021032). AMM's contribution was supported by National Science Foundation grant OCE#-1923387 and National Oceanographic and Atmospheric Administration grant #NA16OAR4310172.
    Repository Name: Woods Hole Open Access Server
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