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  • 1
    Publication Date: 2011-04-20
    Description: The identification of genes that participate in melanomagenesis should suggest strategies for developing therapeutic modalities. We used a public array comparative genomic hybridization (CGH) database and real-time quantitative PCR (qPCR) analyses to identify the AMP kinase (AMPK)-related kinase NUAK2 as a candidate gene for melanomagenesis, and we analyzed its functions in melanoma cells. Our analyses had identified a locus at 1q32 where genomic gain is strongly associated with tumor thickness, and we used real-time qPCR analyses and regression analyses to identify NUAK2 as a candidate gene at that locus. Associations of relapse-free survival and overall survival of 92 primary melanoma patients with NUAK2 expression measured using immunohistochemistry were investigated using Kaplan–Meier curves, log rank tests, and Cox regression models. Knockdown of NUAK2 induces senescence and reduces S-phase, decreases migration, and down-regulates expression of mammalian target of rapamycin (mTOR). In vivo analysis demonstrated that knockdown of NUAK2 suppresses melanoma tumor growth in mice. Survival analysis showed that the risk of relapse is greater in acral melanoma patients with high levels of NUAK2 expression than in acral melanoma patients with low levels of NUAK2 expression (hazard ratio = 3.88; 95% confidence interval = 1.44–10.50; P = 0.0075). These data demonstrate that NUAK2 expression is significantly associated with the oncogenic features of melanoma cells and with the survival of acral melanoma patients. NUAK2 may provide a drug target to suppress melanoma progression. This study further supports the importance of NUAK2 in cancer development and tumor progression, while AMPK has antioncogenic properties.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 2
    Publication Date: 2018-12-04
    Description: Author(s): I. Katayama, H. Kawakami, T. Hagiwara, Y. Arashida, Y. Minami, L.-W. Nien, O. S. Handegard, T. Nagao, M. Kitajima, and J. Takeda Terahertz-field-induced carrier generation processes were investigated in Dirac electron systems, single-crystalline bismuth antimony alloy thin films ( B i 1 − x S b x ; 0 ≤ x ≤ 0.16 ). This investigation was performed by precisely tuning, via the substituent ratio x , the band structure of the films from that as... [Phys. Rev. B 98, 214302] Published Mon Dec 03, 2018
    Keywords: Dynamics, dynamical systems, lattice effects
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 3
    Publication Date: 2014-07-22
    Description: 'Gain' of supernumerary copies of the 8q24.21 chromosomal region has been shown to be common in many human cancers and is associated with poor prognosis. The well-characterized myelocytomatosis (MYC) oncogene resides in the 8q24.21 region and is consistently co-gained with an adjacent 'gene desert' of approximately 2 megabases that contains the long non-coding RNA gene PVT1, the CCDC26 gene candidate and the GSDMC gene. Whether low copy-number gain of one or more of these genes drives neoplasia is not known. Here we use chromosome engineering in mice to show that a single extra copy of either the Myc gene or the region encompassing Pvt1, Ccdc26 and Gsdmc fails to advance cancer measurably, whereas a single supernumerary segment encompassing all four genes successfully promotes cancer. Gain of PVT1 long non-coding RNA expression was required for high MYC protein levels in 8q24-amplified human cancer cells. PVT1 RNA and MYC protein expression correlated in primary human tumours, and copy number of PVT1 was co-increased in more than 98% of MYC-copy-increase cancers. Ablation of PVT1 from MYC-driven colon cancer line HCT116 diminished its tumorigenic potency. As MYC protein has been refractory to small-molecule inhibition, the dependence of high MYC protein levels on PVT1 long non-coding RNA provides a much needed therapeutic target.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4767149/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4767149/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tseng, Yuen-Yi -- Moriarity, Branden S -- Gong, Wuming -- Akiyama, Ryutaro -- Tiwari, Ashutosh -- Kawakami, Hiroko -- Ronning, Peter -- Reuland, Brian -- Guenther, Kacey -- Beadnell, Thomas C -- Essig, Jaclyn -- Otto, George M -- O'Sullivan, M Gerard -- Largaespada, David A -- Schwertfeger, Kathryn L -- Marahrens, York -- Kawakami, Yasuhiko -- Bagchi, Anindya -- P30 CA077598/CA/NCI NIH HHS/ -- England -- Nature. 2014 Aug 7;512(7512):82-6. doi: 10.1038/nature13311. Epub 2014 Jun 22.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Genetics, Cell Biology and Development, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA. ; 1] Masonic Cancer Center, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA [2]. ; 1] Department of Genetics, Cell Biology and Development, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA [2] Masonic Cancer Center, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA [3]. ; 1] Department of Genetics, Cell Biology and Development, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA [2] Stem Cell Institute, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA. ; 1] Masonic Cancer Center, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA [2] Center for Bio-Design, Translational Health Science and Technology Institute, Gurgaon 122016, India. ; Department of Laboratory Medicine and Pathology, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA. ; Masonic Cancer Center, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA. ; 1] Department of Genetics, Cell Biology and Development, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA [2] Masonic Cancer Center, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA. ; 1] Masonic Cancer Center, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA [2] Department of Laboratory Medicine and Pathology, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA [3]. ; 1] Department of Genetics, Cell Biology and Development, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA [2]. ; 1] Department of Genetics, Cell Biology and Development, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA [2] Stem Cell Institute, University of Minnesota, Twin Cities, Minneapolis, Minnesota 55455, USA [3].〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25043044" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Transformation, Neoplastic ; Chromosomes, Human, Pair 8/genetics ; DNA Copy Number Variations/*genetics ; Disease Models, Animal ; Gene Amplification/*genetics ; Gene Dosage/*genetics ; Genes, myc/*genetics ; HCT116 Cells ; Humans ; Mice ; Mice, Inbred C57BL ; Oncogene Protein p55(v-myc)/*genetics/metabolism ; Phenotype ; RNA, Long Noncoding/*genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2010-04-30
    Description: Amyotrophic lateral sclerosis (ALS) has its onset in middle age and is a progressive disorder characterized by degeneration of motor neurons of the primary motor cortex, brainstem and spinal cord. Most cases of ALS are sporadic, but about 10% are familial. Genes known to cause classic familial ALS (FALS) are superoxide dismutase 1 (SOD1), ANG encoding angiogenin, TARDP encoding transactive response (TAR) DNA-binding protein TDP-43 (ref. 4) and fused in sarcoma/translated in liposarcoma (FUS, also known as TLS). However, these genetic defects occur in only about 20-30% of cases of FALS, and most genes causing FALS are unknown. Here we show that there are mutations in the gene encoding optineurin (OPTN), earlier reported to be a causative gene of primary open-angle glaucoma (POAG), in patients with ALS. We found three types of mutation of OPTN: a homozygous deletion of exon 5, a homozygous Q398X nonsense mutation and a heterozygous E478G missense mutation within its ubiquitin-binding domain. Analysis of cell transfection showed that the nonsense and missense mutations of OPTN abolished the inhibition of activation of nuclear factor kappa B (NF-kappaB), and the E478G mutation revealed a cytoplasmic distribution different from that of the wild type or a POAG mutation. A case with the E478G mutation showed OPTN-immunoreactive cytoplasmic inclusions. Furthermore, TDP-43- or SOD1-positive inclusions of sporadic and SOD1 cases of ALS were also noticeably immunolabelled by anti-OPTN antibodies. Our findings strongly suggest that OPTN is involved in the pathogenesis of ALS. They also indicate that NF-kappaB inhibitors could be used to treat ALS and that transgenic mice bearing various mutations of OPTN will be relevant in developing new drugs for this disorder.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Maruyama, Hirofumi -- Morino, Hiroyuki -- Ito, Hidefumi -- Izumi, Yuishin -- Kato, Hidemasa -- Watanabe, Yasuhito -- Kinoshita, Yoshimi -- Kamada, Masaki -- Nodera, Hiroyuki -- Suzuki, Hidenori -- Komure, Osamu -- Matsuura, Shinya -- Kobatake, Keitaro -- Morimoto, Nobutoshi -- Abe, Koji -- Suzuki, Naoki -- Aoki, Masashi -- Kawata, Akihiro -- Hirai, Takeshi -- Kato, Takeo -- Ogasawara, Kazumasa -- Hirano, Asao -- Takumi, Toru -- Kusaka, Hirofumi -- Hagiwara, Koichi -- Kaji, Ryuji -- Kawakami, Hideshi -- England -- Nature. 2010 May 13;465(7295):223-6. doi: 10.1038/nature08971. Epub 2010 Apr 28.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Epidemiology, Research Institute for Radiation Biology and Medicine, Hiroshima University, Hiroshima 734-8553, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20428114" target="_blank"〉PubMed〈/a〉
    Keywords: Adolescent ; Adult ; Aged ; Aged, 80 and over ; Amino Acid Sequence ; Amyotrophic Lateral Sclerosis/*genetics/metabolism/pathology/physiopathology ; Asian Continental Ancestry Group ; Base Sequence ; Child ; Codon, Nonsense/genetics ; Consanguinity ; Cytoplasm/metabolism/pathology ; DNA-Binding Proteins/metabolism ; Exons/genetics ; Female ; Humans ; Japan ; Male ; Middle Aged ; Mutant Proteins/analysis/chemistry/genetics/metabolism ; Mutation/*genetics ; Mutation, Missense/genetics ; NF-kappa B/agonists/antagonists & inhibitors/metabolism ; Pedigree ; Polymorphism, Single Nucleotide/genetics ; Protein Transport ; Sequence Deletion/genetics ; Superoxide Dismutase/metabolism ; Transcription Factor TFIIIA/analysis/chemistry/*genetics/metabolism ; Young Adult
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 5
    ISSN: 1089-7623
    Source: AIP Digital Archive
    Topics: Physics , Electrical Engineering, Measurement and Control Technology
    Notes: A small size electron cyclotron resonance ion source to be operating in a pulsed mode has been designed. The main static magnetic field for the confinement is formed by permanent magnets. In addition to these magnets, two small coils are introduced for controlling the magnetic field with a repetition rate synchronized with the pulsed operation of microwave power feeding. One is installed in the middle of the plasma chamber, the other is near the anode electrode. © 2000 American Institute of Physics.
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  • 6
    ISSN: 1089-7623
    Source: AIP Digital Archive
    Topics: Physics , Electrical Engineering, Measurement and Control Technology
    Notes: In negative-ion-based neutral beam injection (NBI) systems for the large helical device (LHD), beams must be transported over 13 m from the H− ion source to the injection port. In order to clarify beam deflection by the electron deflection magnets set in a beam extraction grid (EG) and to control beam transport direction, we analyzed beam trajectories. The physics of the beam deflection was studied with theoretical calculations and the deflection angle was estimated by 3D beam trajectory simulation. The evaluated deflection angle was 10 mrad in the opposite direction of the electron deflection when the maximum magnetic field on the beam axis was 480 G and the beam energy was 83.2 keV. The electrostatic lens effect on the beam deflection at the EG exit was estimated to be larger than the magnetic field effect. This deflection was reduced to 2 mrad by a 1.3 mm displacement of the grounded grid (GG) aperture, a result in agreement with experimental results of a 1/3-scale model for the LHD ion source. The maximum GG aperture displacement of the LHD ion source was designed as 3.4 mm to reduce the deflection and to focus multibeamlets using the simulation. We have developed the ion source with this design. The targeted performance is a production of H− beams of 40 A (40 mA/cm2), 180 keV. © 1998 American Institute of Physics.
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  • 7
    ISSN: 1089-7623
    Source: AIP Digital Archive
    Topics: Physics , Electrical Engineering, Measurement and Control Technology
    Notes: A compact ECR ion source working at a Ku band has been manufactured for the production of both low and multiple charged ions. This source can be formed for both the ordinal ECR zone and second Bernstein resonance zone with a half Becr field. The B minimum field configuration is realized by the use of permanent magnets and its axial mirror field can be adjusted within ±0.03 T by a small auxiliary solenoid. Microwave power can be injected from both axial and radial ports. Effective power of 200–250 W can be supplied to the source with a continuously variable frequency in the range of 12.0–14.5 GHz and with a variable pulse mode. The outer dimension of the source is φ180×230 and its total weight is just 30 kg. The design, manufacture and results of the preliminary test are reported. © 1998 American Institute of Physics.
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  • 8
    ISSN: 1089-7623
    Source: AIP Digital Archive
    Topics: Physics , Electrical Engineering, Measurement and Control Technology
    Notes: Beam extraction tests were carried out using a new compact Ku-band electron cyclotron resonance (ECR) ion source. In the case of a single rf frequency operation, a B2 zone can contribute for increase of single and low charged state ion beams when the gas flow rate is relatively higher than that for the basic ECR mode. The scheme seems, however, not so effective for the production of multicharged state ion beams. A double frequency heating (12 and 14 GHz) is, on the other hand, effective for increase of extracted ion current when the rf power is injected into the chamber from both the axial and the radial ports, as succeeded at the LBL experiment. © 2000 American Institute of Physics.
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  • 9
    ISSN: 1089-7623
    Source: AIP Digital Archive
    Topics: Physics , Electrical Engineering, Measurement and Control Technology
    Notes: For the construction of an electron cyclotron resonance (ECR) charge breeder at the KEK-JAERI radioactive nuclear beam facility, we have made and tested a pilot charge breeding system consisting of two compact-sized ECR ion sources. Using a simulation code, we have investigated the geometrical beam acceptance of the present system for the external injection of ions of interest into ECR plasma. Following discussions on the ECR plasma influenced by a deceleration potential for the external injection, the charge breeding efficiency for Ar ions is presented and discussed. © 2002 American Institute of Physics.
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  • 10
    ISSN: 1089-7623
    Source: AIP Digital Archive
    Topics: Physics , Electrical Engineering, Measurement and Control Technology
    Notes: A single stage 6.4 GHz ECR ion source for an isotope separator on-line based radioactive nuclear beam facility at KEK-Tanashi, is under an on-line test for the effective production of 19Ne2+ ions by using alpha beams from a cyclotron. Synchronized with the pulsed operation of heavy ion linacs, the millisecond beam bunching is now being performed to reduce the loss of radioactive ions in acceleration by using a pulsed-gating potential method. The highest beam intensity at 100 Hz and 20% duty factor reaches 60% of that obtained in a continuous-wave mode. © 1998 American Institute of Physics.
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