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  • 1
    Publication Date: 2011-12-07
    Description: The mimetic butterflies Heliconius erato and Heliconius melpomene have undergone parallel radiations to form a near-identical patchwork of over 20 different wing-pattern races across the Neotropics. Previous molecular phylogenetic work on these radiations has suggested that similar but geographically disjunct color patterns arose multiple times independently in each species. The neutral markers used in these studies, however, can move freely across color pattern boundaries, and therefore might not represent the history of the adaptive traits as accurately as markers linked to color pattern genes. To assess the evolutionary histories across different loci, we compared relationships among races within H. erato and within H. melpomene using a series of unlinked genes, genes linked to color pattern loci, and optix, a gene recently shown to control red color-pattern variation. We found that although unlinked genes partition populations by geographic region, optix had a different history, structuring lineages by red color patterns and supporting a single origin of red-rayed patterns within each species. Genes closely linked (80–250 kb) to optix exhibited only weak associations with color pattern. This study empirically demonstrates the necessity of examining phenotype-determining genomic regions to understand the history of adaptive change in rapidly radiating lineages. With these refined relationships, we resolve a long-standing debate about the origins of the races within each species, supporting the hypothesis that the red-rayed Amazonian pattern evolved recently and expanded, causing disjunctions of more ancestral patterns.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 2
    Publication Date: 2014-09-05
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Jiggins, Chris D -- England -- Nature. 2014 Sep 18;513(7518):318-9. doi: 10.1038/nature13742. Epub 2014 Sep 3.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25186726" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cichlids/*classification/*genetics ; *Evolution, Molecular ; *Genetic Speciation ; Genome/*genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2011-08-16
    Description: Supergenes are tight clusters of loci that facilitate the co-segregation of adaptive variation, providing integrated control of complex adaptive phenotypes. Polymorphic supergenes, in which specific combinations of traits are maintained within a single population, were first described for 'pin' and 'thrum' floral types in Primula and Fagopyrum, but classic examples are also found in insect mimicry and snail morphology. Understanding the evolutionary mechanisms that generate these co-adapted gene sets, as well as the mode of limiting the production of unfit recombinant forms, remains a substantial challenge. Here we show that individual wing-pattern morphs in the polymorphic mimetic butterfly Heliconius numata are associated with different genomic rearrangements at the supergene locus P. These rearrangements tighten the genetic linkage between at least two colour-pattern loci that are known to recombine in closely related species, with complete suppression of recombination being observed in experimental crosses across a 400-kilobase interval containing at least 18 genes. In natural populations, notable patterns of linkage disequilibrium (LD) are observed across the entire P region. The resulting divergent haplotype clades and inversion breakpoints are found in complete association with wing-pattern morphs. Our results indicate that allelic combinations at known wing-patterning loci have become locked together in a polymorphic rearrangement at the P locus, forming a supergene that acts as a simple switch between complex adaptive phenotypes found in sympatry. These findings highlight how genomic rearrangements can have a central role in the coexistence of adaptive phenotypes involving several genes acting in concert, by locally limiting recombination and gene flow.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3717454/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3717454/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Joron, Mathieu -- Frezal, Lise -- Jones, Robert T -- Chamberlain, Nicola L -- Lee, Siu F -- Haag, Christoph R -- Whibley, Annabel -- Becuwe, Michel -- Baxter, Simon W -- Ferguson, Laura -- Wilkinson, Paul A -- Salazar, Camilo -- Davidson, Claire -- Clark, Richard -- Quail, Michael A -- Beasley, Helen -- Glithero, Rebecca -- Lloyd, Christine -- Sims, Sarah -- Jones, Matthew C -- Rogers, Jane -- Jiggins, Chris D -- ffrench-Constant, Richard H -- 079643/Wellcome Trust/United Kingdom -- 098051/Wellcome Trust/United Kingdom -- BB/E008836/1/Biotechnology and Biological Sciences Research Council/United Kingdom -- BBE0118451/Biotechnology and Biological Sciences Research Council/United Kingdom -- G0900740/Medical Research Council/United Kingdom -- England -- Nature. 2011 Aug 14;477(7363):203-6. doi: 10.1038/nature10341.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉CNRS UMR 7205, Museum National d'Histoire Naturelle, CP50, 45 Rue Buffon, 75005 Paris, France. joron@mnhn.fr〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21841803" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Animals ; Butterflies/anatomy & histology/*genetics/physiology ; Chromosome Walking ; Chromosomes, Insect/*genetics ; Gene Rearrangement/*genetics ; Genes, Insect/*genetics ; Genetic Linkage/genetics ; Haplotypes/genetics ; Molecular Mimicry/*genetics/physiology ; Molecular Sequence Data ; Multigene Family/genetics ; Phenotype ; Pigmentation/genetics/physiology ; Polymorphism, Genetic/*genetics ; Wings, Animal/anatomy & histology/metabolism/physiology
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2013-08-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hurst, Gregory D D -- Jiggins, Chris D -- England -- Nature. 2013 Aug 22;500(7463):412-3. doi: 10.1038/500412a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23969458" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bacteria/*classification ; Gastrointestinal Tract/*microbiology ; Germ-Free Life/*physiology ; Hymenoptera/*microbiology/*physiology ; *Symbiosis
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2011-07-23
    Description: Mimicry--whereby warning signals in different species evolve to look similar--has long served as a paradigm of convergent evolution. Little is known, however, about the genes that underlie the evolution of mimetic phenotypes or to what extent the same or different genes drive such convergence. Here, we characterize one of the major genes responsible for mimetic wing pattern evolution in Heliconius butterflies. Mapping, gene expression, and population genetic work all identify a single gene, optix, that controls extreme red wing pattern variation across multiple species of Heliconius. Our results show that the cis-regulatory evolution of a single transcription factor can repeatedly drive the convergent evolution of complex color patterns in distantly related species, thus blurring the distinction between convergence and homology.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Reed, Robert D -- Papa, Riccardo -- Martin, Arnaud -- Hines, Heather M -- Counterman, Brian A -- Pardo-Diaz, Carolina -- Jiggins, Chris D -- Chamberlain, Nicola L -- Kronforst, Marcus R -- Chen, Rui -- Halder, Georg -- Nijhout, H Frederik -- McMillan, W Owen -- New York, N.Y. -- Science. 2011 Aug 26;333(6046):1137-41. doi: 10.1126/science.1208227. Epub 2011 Jul 21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Ecology and Evolutionary Biology, University of California, Irvine, CA 92697, USA. rreed@uci.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21778360" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptation, Biological ; Animals ; *Biological Evolution ; Butterflies/anatomy & histology/*genetics/growth & development ; Evolution, Molecular ; Gene Expression Profiling ; Gene Expression Regulation, Developmental ; *Genes, Insect ; Genetic Variation ; Genome, Insect ; Homeodomain Proteins/*genetics ; Insect Proteins/*genetics ; Linkage Disequilibrium ; Molecular Sequence Data ; Moths/genetics ; Phenotype ; Pigmentation/*genetics ; Regulatory Elements, Transcriptional ; Selection, Genetic ; Species Specificity ; Transcription Factors/genetics ; Transcription, Genetic ; Wings, Animal/*anatomy & histology/growth & development
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 6
  • 7
    Publication Date: 2015-09-19
    Description: The evolution of heterogametic sex chromosomes is often—but not always—accompanied by the evolution of dosage compensating mechanisms that mitigate the impact of sex-specific gene dosage on levels of gene expression. One emerging view of this process is that such mechanisms may only evolve in male-heterogametic (XY) species but not in female-heterogametic (ZW) species, which will consequently exhibit "incomplete" sex chromosome dosage compensation. However, recent results suggest that at least some Lepidoptera (moths and butterflies) may prove to be an exception to this prediction. Studies in bombycoid moths indicate the presence of a chromosome-wide epigenetic mechanism that effectively balances Z chromosome gene expression between the sexes by reducing Z-linked expression in males. In contrast, strong sex chromosome dosage effects without any reduction in male Z-linked expression were previously reported in a pyralid moth, suggesting a lack of any such dosage compensating mechanism. Here we report an analysis of sex chromosome dosage compensation in Heliconius butterflies, sampling multiple individuals for several different adult tissues (head, abdomen, leg, mouth, and antennae). Methodologically, we introduce a novel application of linear mixed-effects models to assess dosage compensation, offering a unified statistical framework that can estimate effects specific to chromosome, to sex, and their interactions (i.e., a dosage effect). Our results show substantially reduced Z-linked expression relative to autosomes in both sexes, as previously observed in bombycoid moths. This observation is consistent with an increasing body of evidence that some lepidopteran species possess an epigenetic dosage compensating mechanism that reduces Z chromosome expression in males to levels comparable with females. However, this mechanism appears to be imperfect in Heliconius , resulting in a modest dosage effect that produces an average 5–20% increase in male expression relative to females on the Z chromosome, depending on the tissue. Thus our results in Heliconius reflect a mixture of previous patterns reported for Lepidoptera. In Heliconius, a moderate pattern of incomplete dosage compensation persists apparently despite the presence of an epigenetic dosage compensating mechanism. The chromosomal distributions of sex-biased genes show an excess of male-biased and a dearth of female-biased genes on the Z chromosome relative to autosomes, consistent with predictions of sexually antagonistic evolution.
    Electronic ISSN: 1759-6653
    Topics: Biology
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  • 8
    Publication Date: 1997-08-05
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 9
  • 10
    Publication Date: 2014-12-20
    Description: Several methods have been proposed to test for introgression across genomes. One method tests for a genome-wide excess of shared derived alleles between taxa using Patterson’s D statistic, but does not establish which loci show such an excess or whether the excess is due to introgression or ancestral population structure. Several recent studies have extended the use of D by applying the statistic to small genomic regions, rather than genome-wide. Here, we use simulations and whole-genome data from Heliconius butterflies to investigate the behavior of D in small genomic regions. We find that D is unreliable in this situation as it gives inflated values when effective population size is low, causing D outliers to cluster in genomic regions of reduced diversity. As an alternative, we propose a related statistic $${\widehat{f}}_{d}$$ , a modified version of a statistic originally developed to estimate the genome-wide fraction of admixture. $${\widehat{f}}_{d}$$ is not subject to the same biases as D , and is better at identifying introgressed loci. Finally, we show that both D and $${\widehat{f}}_{d}$$ outliers tend to cluster in regions of low absolute divergence ( d XY ), which can confound a recently proposed test for differentiating introgression from shared ancestral variation at individual loci.
    Print ISSN: 0737-4038
    Electronic ISSN: 1537-1719
    Topics: Biology
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