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  • 16S rRNA  (4)
  • Information Management
  • 1
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    Unknown
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25750 | 18721 | 2018-10-13 07:33:30 | 25750 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-16
    Description: DNA barcode is a short, standard well known sequence of cytochrome oxidase І gene. By using this DNA sequence can be realized that each animal, plant or fungus belongs to which species. in this research, samples were collected from imported cultured shrimp Litopenaeus vannamei and and 6 Persian Gulf and Oman Sea shrimp species which classified based on traditional systematically as: Penaeus semisulcatus, Fenneropenaeus merguiensis, Metapenaeus affinis, Parapenaeopsis Stylifera and Fenneropenaeus indicus. After examination of DNA barcode sequence, molecular and bioinformatics operations of each sequence in the Consortium for the Barcode of Life (CBOL) and National Center for Biotechnology Information (NCBI), phylogenetic analysis of each sample was determined and similarity of each sample with NCBI and CBOL database was checked and the closest species to each sample were specified. According to the results different samples of L. vannamei, . banded P.semisulcatus, F. merguiensis and F. indicus have more than 97% similarity to the same species of other countries. non banded P.semisulcatus had 80.07% similarity to banded P.semisulcatus, M. affinis samples had 90.3% similarity to Metapenaeus ensis and Parap. Stylifera had 93.44% similarity to Parapenaeopsis coromandelica in the CBOL. This funding confirmed the need for further investigation and possible announcement of new species.
    Keywords: Biology ; Information Management ; Iran ; DNA barcode ; Shrimp ; Litopenaeus vannamei ; Penaeus semisulcatus ; Fenneropenaeus merguiensis ; Metapenaeus affinis ; Parapenaeopsis stylifera ; Fenneropenaeus indicus
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 72
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  • 2
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    Unknown
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25763 | 18721 | 2018-10-13 07:32:19 | 25763 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-16
    Description: The aim of this study was to determine the genetic parameters, genetic differentiation and relative relationship between different generations of specific pathogenic free of L.vannamei via molecular methods. Tissue samples of shrimp were randomly get caught from the different area. Genetic parameters were evaluated by 12 special primers of L.vannamei via microsatellite assay. In this study, two population of Molokaei and High health were identified as shrimp broodstocks of specific disease free (SPF) zero generation. Breeding among shrimp (males and females) were through inbreeding and crossbreeding. Three various stocks were produced: H♂ × M♀, M♂ × H♀ and H♀ × H♂. Genetic differences and relative relationship between different generations of specific pathogenic free shrimp were to evaluate by evaluation of 16S rRNA and d-loop region mitochondrial of different generations, respectively. The results showed that significant differences were observed among genetic distance of different populations of L.vannamei farmed (0.615). There were o.o78 Fst value of M.H and H.M stokes that it was a significant difference (P 〈0.001). The analysis of d-loop region of mitochondrial genomes of different generations shrimp was observed 997 positions with 3-6 and 766-799 of haplotype and monomorphic, respectively. Despite haplotype diversity and nucleotide diversity of all generations SPF shrimp were 0.877 and 0.12, respectively. While, Base on result of 16S rRNA indicated that of 486 sites have been identified 484 sites were conserved. Also, monomorphic sites ranged between 482-486 sites and was consists 2 polymorphic sites and 2 transitional sites. The number haplotypes, haplotypes diversity, nucleotide diversity revealed in this region were 2, 0.356±0.159 and 0.00147, respectively. Regarding the results of in this study can be concluded that lack of arriving new broodstocks from outside the country and was mating between adult males and females relative (full-sib) addition to small effective population size there was both genetic drift and number of haplotypes was gradually reduced from zero generation to second generation. Hence, due to the high close relationship between different generations shrimp evaluation of d-loop and 16S rRNA regions of the mitochondrial genome were little genetic difference between them.
    Keywords: Biology ; Iran ; Litopenaeus vannamei ; Genetic parameters ; Microsatellite ; Mitochondrial genome ; 16S rRNA ; 16S rRNA region ; Evaluation ; Detection
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 80
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  • 3
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    Unknown
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25769 | 18721 | 2018-10-13 08:05:39 | 25769 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-16
    Description: In this study, after determining history of origin entering white leg shrimp of broodstocks at hatcheries of country, finally, two population of Molokaei and High health were considered as shrimp broodstocks of specific disease free (SPF) zero generation. After inbreeding and cross breeding among adult males and females of two population above, three storage different were produced in the first generation: H♂ × M♀, M♂ × H♀ and H♀ × H♂. The second generation were produced from selective breeding of M♂ × H♀. The aim of this study was to determine genetic differences between different generations of specific pathogenic free shrimp by evaluation of 16S rRNA region mitochondrial of different generations. Result of this study showed that of 486 sites have been identified 484 sites were conserved. Also, monomorphic sites ranged between 482 - 486 sites and was consists 2 polymorphic sites and 2 transitional sites. The number haplotypes, haplotypes diversity, nucleotide diversity revealed in this region were 2, 0.356±0.159 and 0.00147, respectively. Due to the high genetic identify and reduce of genetic distance of shrimp between different generations of SPF shrimp, genetic differentiation and gene flow (Nm) between them were -.142 and -2.00, respectively. This rates clearly shows a low level of polymorphism in this region of mitochondrial of different generation of SPF. This may be occurred because of small effective populations and genetic drift. Thus, offspring had inherited mitochondrial genome from your mother, therefore, it is expected that rate of variation in this genome is influenced by several factors, including genetic drift, due to unavailability of new-broodstock from different areas. It was observed that due to high conservation sites in 16S rRNA region of mitochondrial genome, nothing genetic differentiation was observed among different generations of SPF.
    Keywords: Aquaculture ; Biology ; Iran ; Litopenaeus vannamei ; Mitochondrial genome ; 16S rRNA ; Genetic differentiation
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 46
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  • 4
    Publication Date: 2021-05-19
    Description: In this study, after determining history of origin entering white leg shrimp of broodstocks at hatcheries of country, finally, two population of Molokaei and High health were considered as shrimp broodstocks of specific disease free (SPF) zero generation. After inbreeding and cross breeding among adult males and females of two population above, three storage different were produced in the first generation: H♂ × M♀, M♂ × H♀ and H♀ × H♂. The second generation were produced from selective breeding of M♂ × H♀. The aim of this study was to determine genetic differences between different generations of specific pathogenic free shrimp by evaluation of 16S rRNA region mitochondrial of different generations. Result of this study showed that of 486 sites have been identified 484 sites were conserved. Also, monomorphic sites ranged between 482 - 486 sites and was consists 2 polymorphic sites and 2 transitional sites. The number haplotypes, haplotypes diversity, nucleotide diversity revealed in this region were 2, 0.356±0.159 and 0.00147, respectively. Due to the high genetic identify and reduce of genetic distance of shrimp between different generations of SPF shrimp, genetic differentiation and gene flow (Nm) between them were -.142 and -2.00, respectively. This rates clearly shows a low level of polymorphism in this region of mitochondrial of different generation of SPF. This may be occurred because of small effective populations and genetic drift. Thus, offspring had inherited mitochondrial genome from your mother, therefore, it is expected that rate of variation in this genome is influenced by several factors, including genetic drift, due to unavailability of new-broodstock from different areas. It was observed that due to high conservation sites in 16S rRNA region of mitochondrial genome, nothing genetic differentiation was observed among different generations of SPF.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Litopenaeus vannamei ; Mitochondrial genome ; 16S rRNA ; Genetic differentiation
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 46pp.
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  • 5
    facet.materialart.
    Unknown
    Iranian Fisheries Science Research Institute | Tehran, Iran
    Publication Date: 2021-05-19
    Description: The aim of this study was to determin the genetic parameters, genetic differentiation and relative relationship between different generations of specific pathogenic free of L.vannamei via molecular methods. Tissue samples of shrimp were randomly get caught from the different area. Genetic parameters were evaluated by 12 special primers of L.vannamei via microsatellite assay. In this study, two population of Molokaei and High health were identified as shrimp broodstocks of specific disease free (SPF) zero generation. Breeding among shrimp (males and females) were through inbreeding and crossbreeding. Three various stocks were produced: H♂ × M♀, M♂ × H♀ and H♀ × H♂. Genetic differences and relative relative relationship between different generations of specific pathogenic free shrimp were to evaluate by evaluation of 16S rRNA and d-loop region mitochondrial of different generations, respectively. The results showed that significant differences were observed among genetic distance of different populations of L.vannamei farmed (0.615). There were o.o78 Fst value of M.H and H.M stokes that it was a significant difference (P 〈0.001). The analysis of d-loop region of mitochondrial genomes of different generations shrimp was observed 997 positions with 3-6 and 766-799 of haplotype and monomorphic, respectively. Despite haplotype diversity and nucleotide diversity of all generations SPF shrimp were 0.877 and 0.12, respectively. While, Base on result of 16S rRNA indicated that of 486 sites have been identified 484 sites were conserved. Also, monomorphic sites ranged between 482-486 sites and was consists 2 polymorphic sites and 2 transitional sites. The number haplotypes, haplotypes diversity, nucleotide diversity revealed in this region were 2, 0.356±0.159 and 0.00147, respectively. Regarding the results of in this study can be concluded that lack of arriving new broodstocks from outside the country and was mating between adult males and females relative (full-sib) addition to small effective population size there was both genetic drift and number of haplotypes was gradually reduced from zero generation to second generation. Hence, due to the high close relationship between different generations shrimp evaluation of d-loop and 16S rRNA regions of the mitochondrial genome were little genetic difference between them.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Litopenaeus vannamei ; Genetic parameters ; Microsatellite ; Mitochondrial genome ; 16S rRNA ; 16S rRNA region ; Evaluation ; Detection
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 80pp.
    Location Call Number Expected Availability
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