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  • Data  (30)
  • 2010-2014  (30)
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  • 1
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    PANGAEA
    In:  Supplement to: Mackinder, Luke C M; Wheeler, Glen; Schroeder, Declan C; von Dassow, Peter; Riebesell, Ulf; Brownlee, Colin (2011): Expression of biomineralization-related ion transport genes in Emiliania huxleyi. Environmental Microbiology, 13(12), 3250-3265, https://doi.org/10.1111/j.1462-2920.2011.02561.x
    Publication Date: 2023-09-02
    Description: Biomineralization in the marine phytoplankton Emiliania huxleyi is a stringently controlled intracellular process. The molecular basis of coccolith production is still relatively unknown although its importance in global biogeochemical cycles and varying sensitivity to increased pCO2 levels has been well documented. This study looks into the role of several candidate Ca2+, H+ and inorganic carbon transport genes in E. huxleyi, using quantitative reverse transcriptase PCR. Differential gene expression analysis was investigated in two isogenic pairs of calcifying and non-calcifying strains of E. huxleyi and cultures grown at various Ca2+ concentrations to alter calcite production. We show that calcification correlated to the consistent upregulation of a putative HCO3- transporter belonging to the solute carrier 4 (SLC4) family, a Ca2+/H+ exchanger belonging to the CAX family of exchangers and a vacuolar H+-ATPase. We also show that the coccolith-associated protein, GPA is downregulated in calcifying cells. The data provide strong evidence that these genes play key roles in E. huxleyi biomineralization. Based on the gene expression data and the current literature a working model for biomineralization-related ion transport in coccolithophores is presented.
    Keywords: BIOACID; Biological Impacts of Ocean Acidification
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 2
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    PANGAEA
    In:  Supplement to: Schulz, Kai Georg; Bellerby, Richard G J; Brussaard, Corina P D; Büdenbender, Jan; Czerny, Jan; Engel, Anja; Fischer, Matthias; Krug, Sebastian; Lischka, Silke; Koch-Klavsen, Stephanie; Ludwig, Andrea; Meyerhöfer, Michael; Nondal, G; Silyakova, Anna; Stuhr, Annegret; Riebesell, Ulf (2013): Temporal biomass dynamics of an Arctic plankton bloom in response to increasing levels of atmospheric carbon dioxide. Biogeosciences, 10(1), 161-180, https://doi.org/10.5194/bg-10-161-2013
    Publication Date: 2023-10-21
    Description: Ocean acidification and carbonation, driven by anthropogenic emissions of carbon dioxide (CO2), have been shown to affect a variety of marine organisms and are likely to change ecosystem functioning. High latitudes, especially the Arctic, will be the first to encounter profound changes in carbonate chemistry speciation at a large scale, namely the under-saturation of surface waters with respect to aragonite, a calcium carbonate polymorph produced by several organisms in this region. During a CO2 perturbation study in 2010, in the framework of the EU-funded project EPOCA, the temporal dynamics of a plankton bloom was followed in nine mesocosms, manipulated for CO2 levels ranging initially from about 185 to 1420 matm. Dissolved inorganic nutrients were added halfway through the experiment. Autotrophic biomass, as identified by chlorophyll a standing stocks (Chl a), peaked three times in all mesocosms. However, while absolute Chl a concentrations were similar in all mesocosms during the first phase of the experiment, higher autotrophic biomass was measured at high in comparison to low CO2 during the second phase, right after dissolved inorganic nutrient addition. This trend then reversed in the third phase. There were several statistically significant CO2 effects on a variety of parameters measured in certain phases, such as nutrient utilization, standing stocks of particulate organic matter, and phytoplankton species composition. Interestingly, CO2 effects developed slowly but steadily, becoming more and more statistically significant with time. The observed CO2 related shifts in nutrient flow into different phytoplankton groups (mainly diatoms, dinoflagellates, prasinophytes and haptophytes) could have consequences for future organic matter flow to higher trophic levels and export production, with consequences for ecosystem productivity and atmospheric CO2.
    Keywords: BIOACID; Biological Impacts of Ocean Acidification
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 3
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    PANGAEA
    In:  Supplement to: Franz, Jasmin; Hauss, Helena; Sommer, Ulrich; Dittmar, Thorsten; Riebesell, Ulf (2012): Production, partitioning and stoichiometry of organic matter under variable nutrient supply during mesocosm experiments in the tropical Pacific and Atlantic Ocean. Biogeosciences, 9(11), 4629-4643, https://doi.org/10.5194/bg-9-4629-2012
    Publication Date: 2023-10-28
    Description: Oxygen-deficient waters in the ocean, generally referred to as oxygen minimum zones (OMZ), are expected to expand as a consequence of global climate change. Poor oxygenation is promoting microbial loss of inorganic nitrogen (N) and increasing release of sediment-bound phosphate (P) into the water column. These intermediate water masses, nutrient-loaded but with an N deficit relative to the canonical N:P Redfield ratio of 16:1, are transported via coastal upwelling into the euphotic zone. To test the impact of nutrient supply and nutrient stoichiometry on production, partitioning and elemental composition of dissolved (DOC, DON, DOP) and particulate (POC, PON, POP) organic matter, three nutrient enrichment experiments were conducted with natural microbial communities in shipboard mesocosms, during research cruises in the tropical waters of the southeast Pacific and the northeast Atlantic. Maximum accumulation of POC and PON was observed under high N supply conditions, indicating that primary production was controlled by N availability. The stoichiometry of microbial biomass was unaffected by nutrient N:P supply during exponential growth under nutrient saturation, while it was highly variable under conditions of nutrient limitation and closely correlated to the N:P supply ratio, although PON:POP of accumulated biomass generally exceeded the supply ratio. Microbial N:P composition was constrained by a general lower limit of 5:1. Channelling of assimilated P into DOP appears to be the mechanism responsible for the consistent offset of cellular stoichiometry relative to inorganic nutrient supply and nutrient drawdown, as DOP build-up was observed to intensify under decreasing N:P supply. Low nutrient N:P conditions in coastal upwelling areas overlying O2-deficient waters seem to represent a net source for DOP, which may stimulate growth of diazotrophic phytoplankton. These results demonstrate that microbial nutrient assimilation and partitioning of organic matter between the particulate and the dissolved phase are controlled by the N:P ratio of upwelled nutrients, implying substantial consequences for nutrient cycling and organic matter pools in the course of decreasing nutrient N:P stoichiometry.
    Keywords: Climate - Biogeochemistry Interactions in the Tropical Ocean; SFB754
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 4
    Publication Date: 2023-10-28
    Keywords: Biogenic silica; Carbon, organic, dissolved; Carbon, organic, particulate; Climate - Biogeochemistry Interactions in the Tropical Ocean; DATE/TIME; M77/3; M77/3-mesocosm; MESO; Mesocosm experiment; Meteor (1986); Nitrogen, organic, dissolved; Nitrogen, organic, particulate; Nitrogen, total; Phosphorus, organic, dissolved; Phosphorus, organic, particulate; Phosphorus, total; Sample code/label; SFB754; Silicate; Transparent exopolymer particles; Treatment
    Type: Dataset
    Format: text/tab-separated-values, 1070 data points
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  • 5
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    PANGAEA
    In:  Supplement to: Schlüter, Lothar; Lohbeck, Kai T; Gutowska, Magdalena A; Gröger, Joachim P; Riebesell, Ulf; Reusch, Thorsten B H (2014): Adaptation of a globally important coccolithophore to ocean warming and acidification. Nature Climate Change, https://doi.org/10.1038/NCLIMATE2379
    Publication Date: 2023-10-23
    Description: Although oceanwarming and acidification are recognized as two major anthropogenic perturbations of today's oceanswe know very little about how marine phytoplankton may respond via evolutionary change.We tested for adaptation to ocean warming in combination with ocean acidification in the globally important phytoplankton species Emiliania huxleyi. Temperature adaptation occurred independently of ocean acidifcation levels. Exponential growth rates were were up to 16% higher in populations adapted for one year to warming when assayed at their upper thermal tolerance limit. Particulate inorganic (PIC) and organic (POC) carbon production was restored to values under present-day ocean conditions, owing to adaptive evolution, and were 101% and 55% higher under combined warming and acidification, respectively, than in non-adapted controls. Cells also evolved to a smaller size while they recovered their initial PIC:POC ratio even under elevated CO2. The observed changes in coccolithophore growth, calcite and biomass production, cell size and elemental composition demonstrate the importance of evolutionary processes for phytoplankton performance in a future ocean. At the end of a 1-yr temperature selection phase, we conducted a reciprocal assay experiment in which temperature-adapted asexual populations were compared to the respective non-adapted control populations under high temperature, and vice versa (1. Assay Data, Dataset #835336). Mean exponential growth rates m in treatments subjected to high temperature increased rapidly under all high temperature-CO2 treatment combinations during the temperature selection phase (2. time series, Dataset #835339).
    Keywords: BIOACID; Biological Impacts of Ocean Acidification
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 6
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    PANGAEA
    In:  GEOMAR - Helmholtz Centre for Ocean Research Kiel | Supplement to: Engel, Anja; Piontek, Judith; Grossart, Hans-Peter; Riebesell, Ulf; Schulz, Kai Georg; Sperling, Martin (2014): Impact of CO2 enrichment on organic matter dynamics during nutrient induced coastal phytoplankton blooms. Journal of Plankton Research, 36(3), 641-657, https://doi.org/10.1093/plankt/fbt125
    Publication Date: 2024-02-01
    Description: A mesocosm experiment was conducted to investigate the impact of rising fCO2 on the build-up and decline of organic matter during coastal phytoplankton blooms. Five mesocosms (~38 m³ each) were deployed in the Baltic Sea during spring (2009) and enriched with CO2 to yield a gradient of 355-862 µatm. Mesocosms were nutrient fertilized initially to induce phytoplankton bloom development. Changes in particulate and dissolved organic matter concentrations, including dissolved high-molecular weight (〉1 kDa) combined carbohydrates, dissolved free and combined amino acids as well as transparent exopolymer particles (TEP), were monitored over 21 days together with bacterial abundance, and hydrolytic extracellular enzyme activities. Overall, organic matter followed well-known bloom dynamics in all CO2 treatments alike. At high fCO2, higher dPOC:dPON during bloom rise, and higher TEP concentrations during bloom peak, suggested preferential accumulation of carbon-rich components. TEP concentration at bloom peak was significantly related to subsequent sedimentation of particulate organic matter. Bacterial abundance increased during the bloom and was highest at high fCO2. We conclude that increasing fCO2 supports production and exudation of carbon-rich components, enhancing particle aggregation and settling, but also providing substrate and attachment sites for bacteria. More labile organic carbon and higher bacterial abundance can increase rates of oxygen consumption and may intensify the already high risk of oxygen depletion in coastal seas in the future.
    Keywords: BIOACID; Biological Impacts of Ocean Acidification; SOPRAN; Surface Ocean Processes in the Anthropocene
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 7
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    PANGAEA
    In:  Supplement to: Bach, Lennart Thomas; Riebesell, Ulf; Sett, Scarlett; Febin, Sarah; Rzepka, Paul; Schulz, Kai Georg (2012): An approach for particle sinking velocity measurements in the 3–400 µm size range and considerations on the effect of temperature on sinking rates. Marine Biology, 159(8), 1853-1864, https://doi.org/10.1007/s00227-012-1945-2
    Publication Date: 2024-03-06
    Description: The flux of organic particles below the mixed layer is one major pathway of carbon from the surface into the deep ocean. The magnitude of this export flux depends on two major processes--remineralization rates and sinking velocities. Here, we present an efficient method to measure sinking velocities of particles in the size range from approximately 3-400 µm by means of video microscopy (FlowCAM®). The method allows rapid measurement and automated analysis of mixed samples and was tested with polystyrene beads, different phytoplankton species, and sediment trap material. Sinking velocities of polystyrene beads were close to theoretical values calculated from Stokes' Law. Sinking velocities of the investigated phytoplankton species were in reasonable agreement with published literature values and sinking velocities of material collected in sediment trap increased with particle size. Temperature had a strong effect on sinking velocities due to its influence on seawater viscosity and density. An increase in 9 °C led to a measured increase in sinking velocities of 40 %. According to this temperature effect, an average temperature increase in 2 °C as projected for the sea surface by the end of this century could increase sinking velocities by about 6 % which might have feedbacks on carbon export into the deep ocean.
    Keywords: BIOACID; Biological Impacts of Ocean Acidification
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 8
    Publication Date: 2024-03-15
    Keywords: Alkalinity, total; Aragonite saturation state; Arctic; Bicarbonate ion; Biomass; Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chlorophyll a; Coast and continental shelf; Community composition and diversity; Coulometric titration; DATE/TIME; Entire community; EPOCA; European Project on Ocean Acidification; Field experiment; Fluorometric; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gymnodinium arcticum; Gyrodinium fusiforme; Identification; Katodinium glaucum; Lohmaniella oviformis; Mesocosm or benthocosm; Microscopy; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Polar; Potentiometric titration; Rimostrombidium sp.; Salinity; Species; Strombidium conicum; Temperature, water; Time, incubation
    Type: Dataset
    Format: text/tab-separated-values, 27948 data points
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  • 9
    Publication Date: 2024-03-15
    Keywords: Alkalinity, total; Aragonite saturation state; Arctic; Bicarbonate ion; Biomass/Abundance/Elemental composition; Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Coulometric titration; Entire community; EPOCA; European Project on Ocean Acidification; Fatty acids, total; Field experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Group; Identification; Mesocosm or benthocosm; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Polar; Potentiometric titration; Salinity; Temperature, water; Time, incubation
    Type: Dataset
    Format: text/tab-separated-values, 38502 data points
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  • 10
    Publication Date: 2024-03-15
    Keywords: Abundance; Alkalinity, total; Aragonite saturation state; Arctic; Bicarbonate ion; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Community composition and diversity; Coulometric titration; Entire community; EPOCA; European Project on Ocean Acidification; Field experiment; Figure; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Identification; Mesocosm or benthocosm; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Polar; Potentiometric titration; Salinity; Size; Species; Temperature, water; Time, incubation
    Type: Dataset
    Format: text/tab-separated-values, 27144 data points
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