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  • 1
    Publication Date: 2023-01-30
    Keywords: Calculated after Luo et al. (2012); Date/Time of event; DEPTH, water; Event label; Latitude of event; Longitude of event; MAREDAT_Diazotrophs_Collection; Nitrogen Fixation (C2H2 Reduction); Nitrogen fixation rate, total; Nitrogen fixation rate, whole seawater; Salinity; Temperature, water; WEC_Stn1; WEC_Stn2; Western English Channel
    Type: Dataset
    Format: text/tab-separated-values, 8 data points
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  • 2
    Publication Date: 2023-12-18
    Keywords: Calculated after Luo et al. (2012); Cape Verde; Chlorophyll a as carbon; Comment; D325_Stn-A-01; D325_Stn-A-02; D325_Stn-B-01; D325_Stn-C-01; D325_Stn-C-02; D325_Stn-C-03; D325_Stn-C-04; D325_Stn-C-05; D325_Stn-C-06; D325_Stn-C-07; D325_Stn-C-08; D325_Stn-D-01; D325_Stn-D-02; D325_Stn-D-03; D325_Stn-D-04; D325_Stn-D-05; D325_Stn-D-06; D325_Stn-D-07; D325_Stn-E-01; D325_Stn-E-02; D325_Stn-E-03; D325_Stn-E-04; D325_Stn-E-05; D325_Stn-F-01; D325_Stn-F-02; D325_Stn-F-03; D325_Stn-F-04; D325_Stn-F-05; D325_Stn-F-06; D325_Stn-F-07; Date/Time of event; DEPTH, water; Event label; Iron; Latitude of event; Longitude of event; MAREDAT_Diazotrophs_Collection; Nitrate; Nitrogen Fixation (C2H2 Reduction); Nitrogen fixation rate, total; Nitrogen fixation rate, whole seawater; Phosphate; PUMP; Salinity; Sample comment; Temperature, water; Water pump
    Type: Dataset
    Format: text/tab-separated-values, 363 data points
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  • 3
    Publication Date: 2023-12-18
    Keywords: Calculated after Luo et al. (2012); Cape Verde; Chlorophyll a; Comment; D325_Stn-A-02; D325_Stn-B-01; D325_Stn-C-01; D325_Stn-C-03; D325_Stn-C-04; D325_Stn-C-05; D325_Stn-C-06; D325_Stn-C-07; D325_Stn-C-08; D325_Stn-D-01; D325_Stn-D-02; D325_Stn-D-03; D325_Stn-D-04; D325_Stn-D-05; D325_Stn-D-06; D325_Stn-E-02; D325_Stn-E-03; D325_Stn-E-04; D325_Stn-E-05; D325_Stn-E-07; D325_Stn-E-08; D325_Stn-F-01; D325_Stn-F-02; D325_Stn-F-03; D325_Stn-F-04; D325_Stn-F-05; D325_Stn-F-06; Date/Time of event; DEPTH, water; Diazotrophs, total biomass as carbon; Event label; Fluorescence-based quantitative real-time PCR (qPCR); Heterocyst, biomass; Iron; Latitude of event; Longitude of event; MAREDAT_Diazotrophs_Collection; Nitrate; Phosphate; PUMP; Richelia, abundance expressed in number of nifH gene copies; Richelia, associated species; Richelia, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; Salinity; Temperature, water; Trichodesmium, abundance expressed in number of nifH gene copies; Trichodesmium, biomass as carbon; Trichodesmium abundance, total; Unicellular cyanobacteria, biomass; Unicellular cyanobacteria-A, abundance expressed in number of nifH gene copies; Unicellular cyanobacteria-A, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; Unicellular cyanobacteria-B, abundance expressed in number of nifH gene copies; Unicellular cyanobacteria-B, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; Water pump
    Type: Dataset
    Format: text/tab-separated-values, 510 data points
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  • 4
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    PANGAEA
    In:  Supplement to: Glas, Martin S; Fabricius, Katharina Elisabeth; de Beer, Dirk; Uthicke, Sven; Gilbert, Jack Anthony (2012): The O2, pH and Ca2+ Microenvironment of Benthic Foraminifera in a High CO2 World. PLoS ONE, 7(11), e50010, https://doi.org/10.1371/journal.pone.0050010
    Publication Date: 2024-03-15
    Description: Ocean acidification (OA) can have adverse effects on marine calcifiers. Yet, phototrophic marine calcifiers elevate their external oxygen and pH microenvironment in daylight, through the uptake of dissolved inorganic carbon (DIC) by photosynthesis. We studied to which extent pH elevation within their microenvironments in daylight can counteract ambient seawater pH reductions, i.e. OA conditions. We measured the O2 and pH microenvironment of four photosymbiotic and two symbiont-free benthic tropical foraminiferal species at three different OA treatments (~432, 1141 and 2151 µatm pCO2). The O2 concentration difference between the seawater and the test surface (delta O2) was taken as a measure for the photosynthetic rate. Our results showed that O2 and pH levels were significantly higher on photosymbiotic foraminiferal surfaces in light than in dark conditions, and than on surfaces of symbiont-free foraminifera. Rates of photosynthesis at saturated light conditions did not change significantly between OA treatments (except in individuals that exhibited symbiont loss, i.e. bleaching, at elevated pCO2). The pH at the cell surface decreased during incubations at elevated pCO2, also during light incubations. Photosynthesis increased the surface pH but this increase was insufficient to compensate for ambient seawater pH decreases. We thus conclude that photosynthesis does only partly protect symbiont bearing foraminifera against OA.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Amphistegina radiata; Aragonite saturation state; Benthos; Bicarbonate ion; Bicarbonate ion, standard deviation; BIOACID; Biological Impacts of Ocean Acidification; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calcite saturation state, standard deviation; Calcium ion; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Chromista; Coast and continental shelf; Coulometric titration; Date; Figure; Foraminifera; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Group; Heterostegina depressa; Heterotrophic prokaryotes; Hydrogen ion concentration; Hydrogen ion concentration, standard deviation; Identification; Individual code; Irradiance; Laboratory experiment; Marginopora vertebralis; Miliola sp.; OA-ICC; Ocean Acidification International Coordination Centre; Oxygen; Oxygen, standard deviation; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Peneroplis sp.; pH; pH, standard deviation; Phosphate; Phosphate, standard deviation; Position; Potentiometric; Potentiometric titration; Primary production/Photosynthesis; Quinquelloculina sp.; Revelle factor; Revelle factor, standard deviation; Salinity; Silicate; Silicate, standard deviation; Single species; Size; Slope; Slope, standard deviation; South Pacific; Species; Spectrophotometric; Temperature, water; Temperature, water, standard deviation; Time point, descriptive; Treatment; Tropical
    Type: Dataset
    Format: text/tab-separated-values, 22899 data points
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  • 5
    Publication Date: 2024-03-15
    Keywords: Abundance; Alkalinity, total; Aragonite saturation state; Arctic; Bicarbonate ion; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Community composition and diversity; Coulometric titration; Entire community; EPOCA; European Project on Ocean Acidification; Field experiment; Figure; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Identification; Mesocosm or benthocosm; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Polar; Potentiometric titration; Salinity; Size; Species; Temperature, water; Time, incubation
    Type: Dataset
    Format: text/tab-separated-values, 27144 data points
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  • 6
    Publication Date: 2024-03-15
    Description: Ocean acidification (OA), caused by the dissolution of increasing concentrations of atmospheric carbon dioxide (CO2) in seawater, is projected to cause significant changes to marine ecology and biogeochemistry. Potential impacts on the microbially driven cycling of nitrogen are of particular concern. Specifically, under seawater pH levels approximating future OA scenarios, rates of ammonia oxidation (the rate-limiting first step of the nitrification pathway) have been shown to dramatically decrease in seawater, but not in underlying sediments. However, no prior study has considered the interactive effects of microbial ammonia oxidation and macrofaunal bioturbation activity, which can enhance nitrogen transformation rates. Using experimental mesocosms, we investigated the responses to OA of ammonia oxidizing microorganisms inhabiting surface sediments and sediments within burrow walls of the mud shrimp Upogebia deltaura. Seawater was acidified to one of four target pH values (pHT 7.90, 7.70, 7.35 and 6.80) in comparison with a control (pHT 8.10). At pHT 8.10, ammonia oxidation rates in burrow wall sediments were, on average, fivefold greater than in surface sediments. However, at all acidified pH values (pH 〈 = 7.90), ammonia oxidation rates in burrow sediments were significantly inhibited (by 79-97%; p 〈 0.01), whereas rates in surface sediments were unaffected. Both bacterial and archaeal abundances increased significantly as pHT declined; by contrast, relative abundances of bacterial and archaeal ammonia oxidation (amoA) genes did not vary. This research suggests that OA could cause substantial reductions in total benthic ammonia oxidation rates in coastal bioturbated sediments, leading to corresponding changes in coupled nitrogen cycling between the benthic and pelagic realms.
    Keywords: Acid-base regulation; Alkalinity, total; Alkalinity, total, standard deviation; Ammonia, oxidation rate; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthos; Bicarbonate ion; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbon, inorganic, total; Carbon, organic, total; Carbon, total; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Change; Coast and continental shelf; Core; Date; DEPTH, sediment, experiment; Depth comment; Entire community; EXP; Experiment; Figure; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gene abundance; Gene expression (incl. proteomics); Haemolymph, pH; Identification; Jennycliff_Bay; Laboratory experiment; Mesocosm or benthocosm; Nitrogen, inorganic; Nitrogen, organic; Nitrogen, total; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Polar; Potentiometric; Potentiometric titration; Salinity; Salinity, standard deviation; Soft-bottom community; Species; Table; Temperature, water; Temperature, water, standard deviation; Treatment; Type; Upogebia deltaura
    Type: Dataset
    Format: text/tab-separated-values, 13415 data points
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  • 7
    Publication Date: 2017-06-19
    Description: Cold-water coral reefs are known to locally enhance the diversity of deep-sea fauna as well as of microbes. Sponges are among the most diverse faunal groups in these ecosystems, and many of them host large abundances of microbes in their tissues. In this study, twelve sponge species from three cold-water coral reefs off Norway were investigated for the relationship between sponge phylogenetic classification (species and family level), as well as sponge type (high versus low microbial abundance), and the diversity of sponge-associated bacterial communities, taking also geographic location and water depth into account. Community analysis by Automated Ribosomal Intergenic Spacer Analysis (ARISA) showed that as many as 345 (79%) of the 437 different bacterial operational taxonomic units (OTUs) detected in the dataset were shared between sponges and sediments, while only 70 (16%) appeared purely sponge-associated. Furthermore, changes in bacterial community structure were significantly related to sponge species (63% of explained community variation), sponge family (52%) or sponge type (30%), whereas mesoscale geographic distances and water depth showed comparatively small effects (〈5% each). In addition, a highly significant, positive relationship between bacterial community dissimilarity and sponge phylogenetic distance was observed within the ancient family of the Geodiidae. Overall, the high diversity of sponges in cold-water coral reefs, combined with the observed sponge-related variation in bacterial community structure, support the idea that sponges represent heterogeneous, yet structured microbial habitats that contribute significantly to enhancing bacterial diversity in deep-sea ecosystems.
    Type: Article , PeerReviewed
    Format: text
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  • 8
    Publication Date: 2016-01-14
    Description: Ocean acidification (OA) can have adverse effects on marine calcifiers. Yet, phototrophic marine calcifiers elevate their external oxygen and pH microenvironment in daylight, through the uptake of dissolved inorganic carbon (DIC) by photosynthesis. We studied to which extent pH elevation within their microenvironments in daylight can counteract ambient seawater pH reductions, i.e. OA conditions. We measured the O2 and pH microenvironment of four photosymbiotic and two symbiont-free benthic tropical foraminiferal species at three different OA treatments (∼432, 1141 and 2151 µatm pCO2). The O2 concentration difference between the seawater and the test surface (ΔO2) was taken as a measure for the photosynthetic rate. Our results showed that O2 and pH levels were significantly higher on photosymbiotic foraminiferal surfaces in light than in dark conditions, and than on surfaces of symbiont-free foraminifera. Rates of photosynthesis at saturated light conditions did not change significantly between OA treatments (except in individuals that exhibited symbiont loss, i.e. bleaching, at elevated pCO2). The pH at the cell surface decreased during incubations at elevated pCO2, also during light incubations. Photosynthesis increased the surface pH but this increase was insufficient to compensate for ambient seawater pH decreases. We thus conclude that photosynthesis does only partly protect symbiont bearing foraminifera against OA.
    Type: Article , PeerReviewed
    Format: text
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