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  • 1
    Call number: AWI Bio-21-94540
    Description / Table of Contents: This thesis investigates how the permafrost microbiota responds to global warming. In detail, the constraints behind methane production in thawing permafrost were linked to methanogenic activity, abundance and composition. Furthermore, this thesis offers new insights into microbial adaptions to the changing environmental conditions during global warming. This was assesed by investigating the potential ecological relevant functions encoded by plasmid DNA within the permafrost microbiota. Permafrost of both interglacial and glacial origin spanning the Holocene to the late Pleistocene, including Eemian, were studied during long-term thaw incubations. Furthermore, several permafrost cores of different stratigraphy, soil type and vegetation cover were used to target the main constraints behind methane production during short-term thaw simulations. Short- and long-term incubations simulating thaw with and without the addition of substrate were combined with activity measurements, amplicon and metagenomic sequencing of permanently frozen and seasonally thawed active layer. Combined, it allowed to address the following questions. i) What constraints methane production when permafrost thaws and how is this linked to methanogenic activity, abundance and composition? ii) How does the methanogenic community composition change during long-term thawing conditions? iii) Which potential ecological relevant functions are encoded by plasmid DNA in active layer soils? The major outcomes of this thesis are as follows. i) Methane production from permafrost after long-term thaw simulation was found to be constrained mainly by the abundance of methanogens and the archaeal community composition. Deposits formed during periods of warmer temperatures and increased precipitation, (here represented by deposits from the Late Pleistocene of both interstadial and interglacial periods) were found to respond strongest to thawing conditions and to contain an archaeal community dominated by methanogenic archaea (40% and 100% of all detected archaea). Methanogenic population size and carbon density were identified as main predictors for potential methane production in thawing permafrost in short-term incubations when substrate was sufficiently available. ii) Besides determining the methanogenic activity after long-term thaw, the paleoenvironmental conditions were also found to influence the response of the methanogenic community composition. Substantial shifts within methanogenic community structure and a drop in diversity were observed in deposits formed during warmer periods, but not in deposits from stadials, when colder and drier conditions occurred. Overall, a shift towards a dominance of hydrogenotrophic methanogens was observed in all samples, except for the oldest interglacial deposits from the Eemian, which displayed a potential dominance of acetoclastic methanogens. The Eemian, which is discussed to serve as an analogue to current climate conditions, contained highly active methanogenic communities. However, all potential limitation of methane production after permafrost thaw, it means methanogenic community structure, methanogenic population size, and substrate pool might be overcome after permafrost had thawed on the long-term. iii) Enrichments with soil from the seasonally thawed active layer revealed that its plasmid DNA (‘metaplasmidome’) carries stress-response genes. In particular it encoded antibiotic resistance genes, heavy metal resistance genes, cold shock proteins and genes encoding UV-protection. Those are functions that are directly involved in the adaptation of microbial communities to stresses in polar environments. It was further found that metaplasmidomes from the Siberian active layer originate mainly from Gammaproteobacteria. By applying enrichment cultures followed by plasmid DNA extraction it was possible to obtain a higher average contigs length and significantly higher recovery of plasmid sequences than from extracting plasmid sequences from metagenomes. The approach of analyzing ‘metaplasmidomes’ established in this thesis is therefore suitable for studying the ecological role of plasmids in polar environments in general. This thesis emphasizes that including microbial community dynamics have the potential to improve permafrost-carbon projections. Microbially mediated methane release from permafrost environments may significantly impact future climate change. This thesis identified drivers of methanogenic composition, abundance and activity in thawing permafrost landscapes. Finally, this thesis underlines the importance to study how the current warming Arctic affects microbial communities in order to gain more insight into microbial response and adaptation strategies.
    Type of Medium: Dissertations
    Pages: VI, 243 Seiten , Diagramme, Illustrationen
    Language: English
    Note: Dissertation, Universität Potsdam, 2020 , Contents Preface Acknowledgements Contents Summary Zusammenfassung List of abbreviations Chapter 1. Introduction 1.1 Motivation 1.2 Carbon storage in Arctic permafrost environments and the permafrost carbon feedback (PCF) 1.3 Methane cycling microorganisms 1.4 The microbial ecology of permafrost 1.5 Plasmids and their potential role in stress tolerance 1.6 Objectives Chapter 2. Study sites 2.1 Regional settings 2.2 Kurungnakh and Samoylov Island 2.3 Bol'shoy Lyakhovsky Island 2.4 Herschel Island Chapter 3. Manuscripts 3.1 Overview of manuscripts, including contribution of co-authors. 3.2 Manuscript I Methanogenic response to long-term permafrost thaw is determined by paleoenvironment 3.3 Manuscript II Methane production in thawing permafrost is constrained by methanogenic population size and carbon density 3.4 Manuscript III Metaplasmidome-encoded functional potential of permafrost active layer soils Chapter 4. Synthesis 4.1 Introduction 4.2 Constraints behind methane production from thawing permafrost 4.3 The methanogenic community response to long-term permafrost thaw 4.4 The adaptive potential of the permafrost micro biota to cope with stress factors during global warming 4.5 Conclusion Chapter 5. Future research directions and perspectives Chapter 6. References Chapter 7. Appendix 7.1 Supporting information for manuscript I 7.2 Supporting information for manuscript II 7.3 Supporting information for manuscript III 7.4 ESR collaboration, manuscript IV
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  • 2
    Call number: AWI Bio-22-94767
    Type of Medium: Dissertations
    Pages: XVIII, 165 Seiten , Illustrationen, Diagramme
    Language: English
    Note: Dissertation, Universität Potsdam, 2021 , Table of Contents Acknowledgements Abstract Zusammenfassung List of figure List of tables List of abbreviation Chapter 1 1. Introduction 1.1 Research background 1.1.1 Response of mountain plant diversity to climate change 1.1.2 Response of Arctic vegetation composition and diversity to climate change 1.1.3 Understanding the critical mechanisms of community assembly are essential for sustaining ecosystem services 1.1.4 Pollen analysis as a traditional tool for representing palaeovegetation 1.1.5. Sedimentary ancient DNA (sedaDNA) is a useful tool for Quaternary ecology tracking 1.2 Study area 1.3 Aims and objectives 1.4 Structure of the thesis 1.4.1 Overview of the chapter 1.4.2 Author's contributions 1.4.3 Methods Chapter 2 2 Manuscript 1: Sedimentary ancient DNA reveals warming-induced alpine habitat loss threat to Tibetan Plateau plant diversity 2.1 Abstract 2.2 Introduction 2.3 Results and discussion 2.4 Methods 2.5 Acknowledgements · Chapter 3 3 Manuscript 2: Holocene vegetation and plant diversity changes in the north-eastern Siberian treeline region from pollen and sedimentary ancient DNA 3.1 Abstract 3.2 Introduction 3.3 Materials and methods 3.3.1 Study area 3.3.2 Lake sediment cores and subsampling 3.3.3 Dating 3.3.4 Pollen analysis 3.3.5 DNA extraction and amplification 3.3.6 Sequencing filtering and taxonomic assignment 3.3.7 Statistical analyses 3.4 Results 3.4.1 Chronology 3.4.2 SedaDNA and pollen assemblages 3.4.3 Gradient analysis and correlation analysis 3.5 Discussion 3 .5.1 Contributions of pollen and sedaDNA to vegetation reconstruction and taxon richness 3.5.2 Variation in Holocene vegetation composition in the Omoloy area, north-eastern Siberia 3.5.3 SedaDNA-based plant diversity changes within lake catchments of the Omoloy region 3.6 Conclusions 3.7 Acknowledgements Chapter 4 4 Manuscript 3: Vegetation reconstruction from Siberia and Tibetan Plateau using modern analogue technique - comparing sedimentary ancient DNA (sedaDNA) and pollen data 4.1 Abstract 4.2 Introduction 4.3 Materials and methods 4.3.1 Sites ofthe modern analogues 4.3.2 Sedimentary (ancient) DNA collection 4.3.3 Metabarcoding data processing and filtering 4.3.4 Pollen data collection 4.3.5 Numerical analysis 4.4 Results 4.4.1 Modern training-set, ROC curve analyses and AT results 4.4.2 Modern analogues for Lake Naleng and Omoloy lake II 4.4.3 Vegetation type reconstruction based on MAT 4.4.4 Projecting fossil samples in ordination space of modern assemblages 4.4.5 Comparing past and present intertaxa relationships 4.5 Discussion 4.5.1 Assessment of analogue quality using modem training-sets 4·5·2 Comparison of sed(a)DNA-based and pollen-based vegetation reconstruction for the Lake Naleng, Tibetan Plateau 4.5.3 Comparison of sedDNA based and pollen-based vegetation reconstruction for the Lake Omoloy, northern Siberia 4.6 Conclusions 4.7 Acknowledgements Chapter 5 5 Manuscript 4: Terrestrial-aquatic ecosystem links on the Tibetan Plateau inferred from sedaDNA shotgun sequencin 5.1 Abstract 5.2 Introduction 5.3 Results 5.4 Discussions 5.5 Methods 5.6 Acknowledgments Chapter 6 6 Synthesis 6.1 The ability of metabarcoding and metagenomic shotgun sequencing to reveal ecological community pattern 6.2 Driver of plant diversity change in high altitude and high latitudes 6.3 High-altitude and high-latitude vegetation type change 6.4 Past terrestrial and aquatic ecological change at ecosystem-scale 6.5 Conclusions and outlook Appendix 1 Appendix-1 Materials for Manuscript #1 1.1 Appendix discussion: Contamination in NTC6 2. Appendix-2 Materials for Manuscript #2 3. Appendix-3 Materials for Manuscript #3 4. Appendix-4 Materials for Manuscript #4 References Eidesstattliche Erklarung
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  • 3
    Call number: AWI Bio-22-94766
    Description / Table of Contents: The arctic-boreal treeline is a transition zone from taiga to tundra covering a vast area in Siberia. It often features large environmental gradients and reacts sensitively to changes in the environment. For example, the expansion of shrubs and a northward movement of the treeline are observable in Siberia as a response to the warming climate. The changes in vegetation across the treeline are known to influence the water chemistry in the lakes. This causes further alteration to the composition and diversity of sensitive aquatic organisms such as diatoms and macrophytes. Despite the rising awareness of the complex climate-feedback mechanisms of terrestrial plants, the understanding of their assembly rules and about responses of aquatic biomes in the surrounding treeline lakes is still limited. The goal of this thesis is to examine the previous and present biodiversity of terrestrial and freshwater biomes from the Siberian treeline ecotone, as well as their reactions to environmental changes. In particular, this thesis attempts to ...
    Type of Medium: Dissertations
    Pages: 132 Blätter , Illustrationen, Diagramme, Karten
    Language: English
    Note: Dissertation, Universität Potsdam, 2021 , Contents List of abbreviations Acknowledgements Summary Zusammenfassung 1 Scientific background 1.1 Motivation 1.2 The arctic-boreal ecotone in time and space 1.2.1 Terrestrial plants composition and biodiversity 1.2.2. Lake macrophytes and diatoms 1.3 Sedimentary DNA metabarcoding as an ecologicalproxy 1.4 Study area 1.5 Objectives of the thesis 1.6 Methods 1.7 Thesis organizations 1.7.1 Manuscripts and chapters 1.7.2 Non-finalized research 1.7.2 Author contributions 2 Manuscript I: Genetic and morphological diatom composition in surface sediments from glacial and thermokarst lakes in the Siberian Arctic 2.1 Abstract 2.2 Introduction 2.3 Materials and methods 2.3.1 Sampling and collection of environmental data 2.3.2 Diatom genetic assessment 2.3.3 Raw sequence processing and taxonomic assignment 2.3.4 Morphological diatom identification 2.3.5 Statistical analyses 2.4 Results 2.4.1 Genetic-based diatom composition, diversityand diatom-environment relationship 2.4.2 Morphological-based diatom composition, diversity and diatom-environment relationship 2.4.3 Comparison of spatial diatom patterns obtained from the genetic and morphological approaches 2.5 Discussion 2.5.1 Genetic and morphological diatom composition and diversity 2.5.2 Diatom composition is affected by lake type and lake water parameters 2.6 Conclusions 2.7 Acknowledgments 3 Manuscript II: Plant sedimentary ancient DNA from Far East Russia covering the last 28 ka reveals different assembly rules in cold and warm climates 3.1 Abstract 3.2 Introduction 3.3 Methods 3.3.1 Study area 3.3.2 Sampling and dating 3.3.3 Genetic laboratory works 3.3.4 Processing the sequence data 3.3.5 Statistical analyses 3.4 Results 3.4.1 Overview of the sequencing data and taxonomic composition 3.4.2 Taxonomic alpha and beta diversity 3.4.3 Phylogenetic alpha and beta diversity 3.4.4 Relationship between taxonomic composition and phylogenetic diversity 3.5 Discussion 3.5.1 Vegetation history revealed by sedaDNA 3.5.2 Patterns oftaxonomic alpha diversity and their relationship to community composition 3.5.3 Relationship between richness and phylogenetic alpha and beta diversity 4 Manuscript III: Sedimentary DNA identifies modem and past macrophyte diversity and its environmental drivers in high latitude and altitude lakes in Siberia and China 4.1 Abstract 4.2 Introduction 4.3 Materialsand Methods 4.3.1 Field sampling of surface and core samples 4.3.2 Environmental data 4.3.3 Molecular genetic laboratory work 4.3.4 Bioinformatic analyses 4.3.5 Statistical analyses 4.4 Results 4.4.1 Macrophyte diversity in surface sediments inferred from sedDNA 4.4.2 Relationship of modem macrophyte richness and environmental variables 4.4.3 The relationship between modem macrophyte community and environmental variables 4.4.4 Past macrophyte richness and composition inferred from sedaDNA 4.4.5 Past macrophyte compositional changes and its environmental drivers 4.5 Discussion 4.5.1 Retrieval of aquatic plant diversity using the tmL P6 loop plant DNA metabarcode 4.5.2 Modem macrophyte diversity and its relation to environmental factors 4.5.3 Temporal macrophyte diversity as an indicator for past environmental change 4.6 Conclusion 5 Synopsis 5.1 Potential and limitations of sedimentary DNA in the applied study 5.1.1 Sedimentary DNA is a powerful proxy 5.1.2 Limitations in sedimentary DNA 5.2 Spatial patterns of vegetation, macrophytes and diatoms 5.2.1 Composition and diversity of vegetation 5.2.2 Composition and diversity of macrophytes 5.2.3 Composition and diversity of diatoms 5.3 Temporal patterns of vegetation, macrophytes and diatoms 5.3.1 Composition and diversity of vegetation 5.3.2 Composition and diversity of macrophytes 5.3.3 Composition and diversity of diatoms 5.4 Outlooks and conclusions Appendices Appendix 1 for Manuscript I Appendix 2 for Manuscript II Appendix 3 for Manuscript III References
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  • 4
    Call number: AWI G5-22-94780
    Type of Medium: Dissertations
    Pages: xxi, 201 Seiten , Illustrationen, Diagramme
    Language: English
    Note: Dissertation, Universität Potsdam, 2021 , Contents List of Figures List of Tables I Preamble 1 Introduction 1.1.1 The Journey from Weather to Climate 1.1.2 The Climate Background 1.1.3 Pollen as Quantitative Indicators of Past Changes 1.2 Overview and Aims of Manuscripts 1.2.1 List of Manuscripts 1.2.2 Short Summaries of the Manuscripts 1.3 Author Contributions to the Manuscripts II Manuscripts 2 Comparing estimation of techniques for temporal Scaling 2.1 Introduction 2.2 Data and Methods 2.2.1 Scaling estimation methods 2.2.2 Evaluation of the estimators 2.2.3 Data 2.3 Results 2.3.1 Effect of Regular and Irregular Sampling 2.3.2 Effect of Time series length 2.3.3 Application to database 2.4 Discussion 2.5 Conclusions 3 Land temperature variability driven by oceans at millennial timescales 4 Variability of surface climate in simulations of past and future 4.1 Introduction 4.2 Data and Method 4.2.1 Model simulations 4.2.2 The Last Glacial Maximum experiment 4.2.3 The mid Holocene experiment (midHolocene) 4.2.4 The warming experiments 1pctCO2 and abrupt4xCO2 4.2.5 Preprocessing of model simulations 4.2.6 Comparisons across the ensemble 4.2.7 Diagnosing variability changes 4.2.8 Changes in precipitation extremes 4.2.9 Timescale-dependence of the variability changes 4.3 Results 4.3.1 Hydrological sensitivity across the ensemble 4.3.2 Changes in local interannual variability 4.3.3 Changes in modes of variability 4.3.4 Circulation patterns underlying extratropical precipitation extremes 4.3.5 Changes in. the spectrum of variability 4.4 Discussion 4.4.1 Changes in climate variability with global mean temperature 4.4.2 Temperature vs. precipitation scaling 4.4.3 Comparison to climate reconstructions and observations 4.4.4 Limitations 4.5 Conclusions 5 Holocene vegetation variability in the Northern Hemisphere 5.1 Introduction 5.2 Data and Methods 5.2.1 Pollen Database 5.2.2 Principal Component Analysis 5.2.3 Timescale-dependent Estimates of Variability 5.2.4 Biome Classification 5.3 Results 5.3.1 General Vegetation Variability Analysis 5.3.2 Comparison of Forested and Open Land Vegetations 5.3.3 Comparison of Broadleaf and Needleleaf Fore ts 5.3.4 Comparison of Temperate and Boreal Coniferous Forests 5.3.5 Comparison of Evergreen and Deciduous Boreal Forests 5.4 Discussion 5.5 Conclusion III Postamble 6 General discussion and conclusion 6.1 Overview 6.2 Timescale-Dependent Estimates of Variability 6.3 Climate and Vegetation Variabilities in the Holocene 6.4 Implications for the 21th Century 6.5 Outlook IV Appendix A Supplementary figures from "Comparing estimation techniques for temporal scaling in paleo-climate timeseries" A.1 Block Average Results A.2 First-Order Correction for the Effect of Interpolation A.3 Change in Bias and Standard Deviation B Methods and supplementary information from "Land temperature variability driven by oceans at millennial timescales" B.1 Methods B.1.1 Reconstructions B.1.2 Significance Testing B.1.3 Testing for Anthropogenic Impacts B.1.4 Instrumental Data B.1.5 Model Data B.1.6 Spectral Estimates B.1.7 Variance Ratios B.1.8 Sub-Decadal Variability Binning B.1.9 Correlation B.1.10 Moran's I B.2 Supplementary Information B.2.1 Tree Ring Data Analysis B.2.2 Energy-Balance Equations B.3 Extended Data Figures C Supplementary figures from "Variability of surface climate in simulations of past and future" D Supplementary figures from "Characterization of holocene vegetation variability in the Northern Hemisphere" Bibliography
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  • 5
    Call number: AWI Bio-22-95014
    Description / Table of Contents: The deciduous needle tree larch (Larix Mill.) covers more than 80% of the Asian boreal forests. Only a few Larix species constitute the vast forests and these species differ markedly in their ecological traits, most importantly in their ability to grow on and stabilize underlying permafrost. The pronounced dominance of the summergreen larches makes the Asian boreal forests unique, as the rest of the northern hemisphere boreal forests is almost exclusively dominated by evergreen needle-leaf forests. Global warming is impacting the whole world but is especially pronounced in the arctic and boreal regions. Although adapted to extreme climatic conditions, larch forests are sensitive to varying climatic conditions. By their sheer size, changes in Asian larch forests as range shifts or changes in species composition and the resulting vegetation-climate feedbacks are of global relevance. It is however still uncertain if larch forests will persist under the ongoing warming climate or if they will be replaced by evergreen forests. It is therefore of great importance to understand how these ecosystems will react to future climate warmings and if they will maintain their dominance. One step in the better understanding of larch dynamics is to study how the vast dominant forests developed and why they only established in northern Asia. A second step is to study how the species reacted to past changes in the climate. The first objective of this thesis was to review and identify factors promoting Asian larch dominance. I achieved this by synthesizing and comparing reported larch occurrences and influencing components on the northern hemisphere continents in the present and in the past. The second objective was to find a possibility to directly study past Larix populations in Siberia and specifically their genetic variation, enabling the study of geographic movements. For this, I established chloroplast enrichment by hybridization capture from sedimentary ancient DNA (sedaDNA) isolated from lake sediment records. The third objective was to use the established method to track past larch populations, their glacial refugia during the Last Glacial Maximum (LGM) around 21,000 years before present (ka BP), and their post-glacial migration patterns. To study larch promoting factors, I compared the present state of larch species ranges, areas of dominance, their bioclimatic niches, and the distribution on different extents and thaw depths of permafrost. The species comparison showed that the bioclimatic niches greatly overlap between the American and Asian species and that it is only in the extremely continental climates in which only the Asian larch species can persist. I revealed that the area of dominance is strongly connected to permafrost extent but less linked to permafrost seasonal thaw depths. Comparisons of the paleorecord of larch between the continents suggest differences in the recolonization history. Outside of northern Asia and Alaska, glacial refugial populations of larch were confined to the southern regions and thus recolonization could only occur as migration from south to north. Alaskan larch populations could not establish wide-range dominant forest which could be related to their own genetically depletion as separated refugial population. In Asia, it is still unclear whether or not the northern refugial populations contributed and enhanced the postglacial colonization or whether they were replaced by populations invading from the south in the course of climate warming. Asian larch dominance is thus promoted partly by adaptions to extremely continental climates and by adaptations to grow on continuous permafrost but could be also connected to differences in glacial survival and recolonization history of Larix species. Except for extremely rare macrofossil findings of fossilized cones, traditional methods to study past vegetation are not able to distinguish between larch species or populations. Within the scope of this thesis, I therefore established a method to retrieve genetic information of past larch populations to distinguish between species. Using the Larix chloroplast genome as target, I successfully applied the method of DNA target enrichment by hybridization capture on sedaDNA samples from lake records and showed that it is able to distinguish between larch species. I then used the method on samples from lake records from across Siberia dating back up to 50 ka BP. The results allowed me to address the question of glacial survival and post-glacial recolonization mode in Siberian larch species. The analyzed pattern showed that LGM refugia were almost exclusively constituted by L. gmelinii, even in sites of current L. sibirica distribution. For included study sites, L. sibirica migrated into its extant northern distribution area only in the Holocene. Consequently, the post-glacial recolonization of L. sibirica was not enhanced by northern glacial refugia. In case of sites in extant distribution area of L. gmelinii, the absence of a genetic turn-over point to a continuous population rather than an invasion of southern refugia. The results suggest that climate has a strong influence on the distribution of Larix species and that species may also respond differently to future climate warming. Because species differ in their ecological characteristics, species distribution is also relevant with respect to further feedbacks between vegetation and climate. With this thesis, I give an overview of present and past larch occurrences and evaluate which factors promote their dominance. Furthermore, I provide the tools to study past Larix species and give first important insights into the glacial history of Larix populations.
    Type of Medium: Dissertations
    Pages: x, 121 Seiten , Illustrationen
    Language: English
    Note: Dissertation, Universität Potsdam, 2022 , Table of Contents Summary Deutsche Zusammenfassung Table of Contents 1 Introduction 1.1 Larix forests in a changing climate 1.2 The genus Larix 1.3 Larix distribution in the world and their dominance in northern Asia 1.4 Methods to study past species dynamics 1.4.1 Modern genetic marker studies 1.4.2 Lake sediments as archives of the past 1.4.3 Pollen and macrofossils 1.4.4 Metabarcoding of sedimentary ancient DNA 1.4.5 Metagenomic shotgun sequencing 1.4.6 Target enrichment by hybridization capture 1.5 Thesis Objectives 1.6 Thesis outline & author contributions 2 Manuscript I 2.1 Abstract 2.2 Introduction 2.3 Material and methods 2.3.1 Bioclimatic limits 2.3.2 Pollen, macrofossil, and DNA datasets 2.3.3 Ice sheets 2.4 Results 2.4.1 Bioclimatic limits of Larix and its distribution on permafrost 2.4.2 Glacial occurrence patterns of Larix 2.5 Discussion 2.5.1 Are differences in species bioclimatic limits responsible for disparity in Larix distribution across continents? 2.5.2 Do high latitude glacial refugia guarantee larch dominance? 2.5.3 What role does postglacial migration play in larch dominance? 2.5.4 Fire as an additional factor 2.5.5 Outlook 2.6 Conclusion 2.7 Acknowledgements 2.8 Author contributions 2.9 References 3 Manuscript II 3.1 Abstract 3.2 Introduction 3.3 Methods 3.3.1 Sample material 3.3.2 Laboratory work 3.3.3 Data analysis 3.4 Results 3.4.1 Overview of the shotgun and hybridization capture data sets 3.4.2 Ancient DNA authenticity 3.4.3 Retrieval of the Larix chloroplast genome 3.5 Discussion 3.5.1 Taxonomic classification—conservative approach results in low numbers of assignment 3.5.2 Target enrichment success—Larix reads increased by orders of magnitude along with other taxonomic groups 3.5.3 Complete retrieval of ancient Larix chloroplast genomes 3.5.4 Larix sibirica variants present over time 3.5.5 Larch forest decline over the last 7000 years 3.6 Conclusion 3.7 Acknowledgments 3.8 Author contributions 3.9 References 4 Manuscript III 4.1 Abstract 4.2 Introduction 4.3 Results & Discussion 4.3.1 Chloroplast and repetitive DNA enrichment in the sedaDNA samples 4.3.2 A wider pre-glacial distribution of L. sibirica 4.3.3 Larix gmelinii formed northern LGM refugia across Siberia 4.3.4 Postglacial colonization history - differences among larch species 4.3.5 Environment likely plays a more important role than biogeography 4.4 Conclusion 4.5 Material & methods 4.5.1 Sample material 4.5.2 Sequence data analysis 4.6 Data availability 4.7 Acknowledgments 4.8 Author contributions 4.9 References 5 Discussion and synthesis 5.1 Hybridization capture is a well-suited method to study ancient species dynamics 5.1.1 Advantages and limitations of shotgun sequencing 5.1.2 Successful hybridization capture enrichment using chloroplast DNA 5.1.3 Challenges in single-copy target enrichment 5.1.4 Limitations and potentials to improve sedaDNA capture studies 5.2 Factors promoting Asian larch dominance 5.3 Drivers of Larix species distribution 5.3.1 Implications for larch forests under climate warming 5.4 Conclusion 5.5 Outlook 6 References 7 Appendix 7.1 Appendix to manuscript I 7.2 Appendix to manuscript II 7.3 Appendix to manuscript III 7.3.1 Material and Methods 7.3.2 Additional Results & Discussions 7.3.3 References Acknowledgements Eidesstattliche Erklärung
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  • 6
    Call number: AWI G8-23-95167
    Description / Table of Contents: The Arctic nearshore zone plays a key role in the carbon cycle. Organic-rich sediments get eroded off permafrost affected coastlines and can be directly transferred to the nearshore zone. Permafrost in the Arctic stores a high amount of organic matter and is vulnerable to thermo-erosion, which is expected to increase due to climate change. This will likely result in higher sediment loads in nearshore waters and has the potential to alter local ecosystems by limiting light transmission into the water column, thus limiting primary production to the top-most part of it, and increasing nutrient export from coastal erosion. Greater organic matter input could result in the release of greenhouse gases to the atmosphere. Climate change also acts upon the fluvial system, leading to greater discharge to the nearshore zone. It leads to decreasing sea-ice cover as well, which will both increase wave energy and lengthen the open-water season. Yet, knowledge on these processes and the resulting impact on the nearshore zone is scarce, because access to and instrument deployment in the nearshore zone is challenging. Remote sensing can alleviate these issues in providing rapid data delivery in otherwise non-accessible areas. However, the waters in the Arctic nearshore zone are optically complex, with multiple influencing factors, such as organic rich suspended sediments, colored dissolved organic matter (cDOM), and phytoplankton. The goal of this dissertation was to use remotely sensed imagery to monitor processes related to turbidity caused by suspended sediments in the Arctic nearshore zone. In-situ measurements of water-leaving reflectance and surface water turbidity were used to calibrate a semi-empirical algorithm which relates turbidity from satellite imagery. Based on this algorithm and ancillary ocean and climate variables, the mechanisms underpinning nearshore turbidity in the Arctic were identified at a resolution not achieved before. The calibration of the Arctic Nearshore Turbidity Algorithm (ANTA) was based on in-situ measurements from the coastal and inner-shelf waters around Herschel Island Qikiqtaruk (HIQ) in the western Canadian Arctic from the summer seasons 2018 and 2019. It performed better than existing algorithms, developed for global applications, in relating turbidity from remotely sensed imagery. These existing algorithms were lacking validation data from permafrost affected waters, and were thus not able to reflect the complexity of Arctic nearshore waters. The ANTA has a higher sensitivity towards the lowest turbidity values, which is an asset for identifying sediment pathways in the nearshore zone. Its transferability to areas beyond HIQ was successfully demonstrated using turbidity measurements matching satellite image recordings from Adventfjorden, Svalbard. The ANTA is a powerful tool that provides robust turbidity estimations in a variety of Arctic nearshore environments. Drivers of nearshore turbidity in the Arctic were analyzed by combining ANTA results from the summer season 2019 from HIQ with ocean and climate variables obtained from the weather station at HIQ, the ERA5 reanalysis database, and the Mackenzie River discharge. ERA5 reanalysis data were obtained as domain averages over the Canadian Beaufort Shelf. Nearshore turbidity was linearly correlated to wind speed, significant wave height and wave period. Interestingly, nearshore turbidity was only correlated to wind speed at the shelf, but not to the in-situ measurements from the weather station at HIQ. This shows that nearshore turbidity, albeit being of limited spatial extent, gets influenced by the weather conditions multiple kilometers away, rather than in its direct vicinity. The large influence of wave energy on nearshore turbidity indicates that freshly eroded material off the coast is a major contributor to the nearshore sediment load. This contrasts results from the temperate and tropical oceans, where tides and currents are the major drivers of nearshore turbidity. The Mackenzie River discharge was not identified as a driver of nearshore turbidity in 2019, however, the analysis of 30 years of Landsat archive imagery from 1986 to 2016 suggests a direct link between the prevailing wind direction, which heavily influences the Mackenzie River plume extent, and nearshore turbidity around HIQ. This discrepancy could be caused by the abnormal discharge behavior of the Mackenzie River in 2019. This dissertation has substantially advanced the understanding of suspended sediment processes in the Arctic nearshore zone and provided new monitoring tools for future studies. The presented results will help to understand the role of the Arctic nearshore zone in the carbon cycle under a changing climate.
    Type of Medium: Dissertations
    Pages: xv, ii, 85, xvii Seiten , Illustrationen, Diagramme, Karten
    Language: English
    Note: Dissertation, Universität Potsdam, 2022 (kumulative Dissertation) , TABLE OF CONTENTS Abstract Zusammenfassung Allgemeinverständliche Zusammenfassung List of Figures List of Tables Funding Chapter 1 Introduction 1.1 Scientific Background 1.1.1 Arctic Climate Change 1.1.2 The Arctic Nearshore Zone 1.1.3 Ocean Color Remote Sensing 1.2 Objectives 1.3 Study Area 1.4 Methods 1.4.1 Field Sampling 1.4.2 Data Processing 1.4.3 Satellite Imagery Processing 1.5 Thesis Structure 1.6 Author Contributions Chapter 2 Long-Term High-Resolution Sediment and Sea Surface Temperature Spatial Patterns in Arctic Nearshore Waters retrived using 30-year Landsat Archive Imagery 2.1 Abstract 2.2 Introduction 2.3 Material and Methods 2.3.1 Regional Setting 2.3.2 Landsat Images Acquisition and Processing 2.3.3 Landsat Turbidity Retrieval 2.3.4 Transects in the nearshore zone 2.3.5 Wind Data 2.4 Results 2.4.1 Brightness Temperature 2.4.2 Surface Reflectance and Turbidity Mapping 2.4.3 Gradients in the nearshore zone 2.5 Discussion 2.6 Conclusion Appendix A Chapter 3 The Arctic Nearshore Turbidity Algorithm (ANTA) - A Multi Sensor Turbidity Algorithm for Arctic Nearshore Environments 3.1 Abstract 3.2 Introduction 3.3 Methods 3.3.1 Regional setting 3.3.2 In-situ sampling 3.3.3 Optical data processing 3.3.4 Algorithm tuning 3.3.5 Satellite imagery processing 3.4 Results and Discussion 3.4.1 Turbidity and SPM 3.4.2 ANTA performance 3.4.3 Comparison with the Dogliotti et al., (2015) algorithm 3.4.4 Test and transfer of the ANTA 3.5 Conclusion Chapter 4 Drivers of Turbidity and its Seasonal Variability in the Nearshore Zone of Herschel Island Qikiqtaruk (western Canadian Arctic) 4.1 Abstract 4.2 Introduction 4.3 Methods 4.3.1 Study Area 4.3.2 Satellite Imagery 4.3.3 In-situ data 4.3.4 Reanalysis data 4.4 Results and Discussion 4.4.1 Time Series Analysis 4.4.2 Drivers of turbidity 4.5 Conclusion Chapter 5 Synthesis 5.1 Applicability of Remote Sensing Algorithms in the Arctic Nearshore Zone 5.2 Drivers of Nearshore Turbidity 5.3 Spatial Variations of Nearshore Turbidity 5.4 Challenges and Outlook List of Acronyms Bibliography Danksagung
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  • 7
    Call number: AWI A4-23-95497
    Description / Table of Contents: Extreme weather and climate events are one of the greatest dangers for present-day society. Therefore, it is important to provide reliable statements on what changes in extreme events can be expected along with future global climate change. However, the projected overall response to future climate change is generally a result of a complex interplay between individual physical mechanisms originated within the different climate subsystems. Hence, a profound understanding of these individual contributions is required in order to provide meaningful assessments of future changes in extreme events. One aspect of climate change is the recently observed phenomenon of Arctic Amplification and the related dramatic Arctic sea ice decline, which is expected to continue over the next decades. The question to what extent Arctic sea ice loss is able to affect atmospheric dynamics and extreme events over mid-latitudes has received a lot of attention over recent years and still remains a highly debated topic. In this respect, the objective of ...
    Type of Medium: Dissertations
    Pages: xi, 126 Seiten , Diagramme
    Language: English
    Note: Dissertation, Universität Potsdam, 2023 , CONTENTS 1 SCIENTIFIC BACKGROUND AND RESEARCH QUESTIONS 1.1 Extreme events and attribution 1.2 Arctic climate change and mid-latitude linkages 1.3 Research questions 2 FOUNDATIONS 2.1 Atmospheric basics 2.1.1 Governing equations 2.1.2 Zonal wind and temperature profiles 2.1.3 Atmospheric waves and instabilities 2.1.4 Large-scale variability patterns and blocking 2.2 Atmospheric circulation regimes 2.2.1 Dynamical concepts 2.2.2 Regime computation 2.2.3 Regime number 2.3 Arctic climate change 2.3.1 Recent trends in Arctic sea ice and temperatures 2.3.2 Surface fluxes and energy balance in Arctic regions 2.3.3 Polar amplification mechanisms 2.3.4 Arctic-mid-latitude linkages 2.4 Weather and climate extremes 2.4.1 Recent trends 2.4.2 Dynamical driver of temperature extremes 3 DATA AND METHODS 3.1 ERA5 reanalysis 3.2 Model experiments 3.2.1 The atmospheric general circulation model ECHAM6 3.2.2 Polar Amplification Intercomparison Project data 3.3 Methods 3.3.1 Statistical significance 3.3.2 Extreme definition 4 RESULTS AND DISCUSSION 4.1 Mean circulation in ERA5 and ECHAM6 experiments 4.1.1 Climatological mean states in ERA5 and the reference simulation 4.1.2 Climatological responses in ECHAM6 sensitivity experiments 4.2 Circulation regimes and sea ice-induced frequency changes 4.2.1 Regime structures in ERA5 and ECHAM6 experiments 4.2.2 Regime frequency changes in ERA 4.2.3 Regime frequency changes in ECHAM6 experiments 4.3 Changes in Northern Hemispheric temperature extremes induced by sea ice loss 4.3.1 Extreme occurrence frequency changes 4.3.2 Temperature return level changes 4.4 Links between circulation regimes and extremes over Europe 4.4.1 Winter temperature extremes 4.4.2 Summer heat extremes 4.4.3 Winter wind extremes 4.5 Decomposition of sea ice-induced frequency changes in European winter extremes 4.5.1 Midwinter cold extremes along a SCAN storyline 4.5.2 January warm extremes along a ATl- storyline 4.5.3 February warm extremes along a NAO+ storyline 4.5.4 Comparison with futSST 4.5.5 January wind extremes along a ATL- storyline 4.6 Circulation Analogue-based approach for summer season 4.6.1 ERA5 event definitions 4.6.2 Reference flows and analogues in ERA5 4.6.3 Circulation analogues in ECHAM6 experiments 4.6.4 Decomposition of sea ice-induced changes in European heat extremes 5 CONCLUSION 5.1 Summary 5.2 Final discussion and outlook Appendix A METHODS A.1 Principal Component Analysis A.2 𝑘-Means clustering A.2.1 Algorithm A.2.2 Computation of circulation regimes A.3 Taylor diagram A.4 Regression model for describing ERA5 regime frequency changes A.4.1 General setup A.4.2 Multinomial Logistic Regression A.4.3 Linear predictor A.5 Definition and calculation of return levels A.5.1 Block maxima approach and Generalized Extreme Value distribution A.5.2 Return level estimation A.6 Framework for conditional extreme event attribution Appendix B ADDITIONAL FIGURES B.1 Circulation regimes and sea ice-induced frequency changes B.2 Changes in Northern Hemispheric temperature extremes induced by sea ice loss B.3 Links between circulation regimes and extremes over Europe B.3.1 Conditioned vs. unconditioned ERA5 and wind extreme probabilities B.3.2 Wind and synoptic-scale activity anomalies B.4 Decomposition of sea ice-induced frequency changes in European winter extremes B.5 Circulation Analogue-based approach for summer season B.6 Miscellaneous B.6.1 Recent Arctic sea ice trends B.6.2 futSST forcing field B.6.3 Fluxes over sea ice and ocean surfaces in ECHAM6 BIBLIOGRAPHY
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  • 8
    Call number: AWI Bio-24-95742
    Description / Table of Contents: The arctic is warming 2 – 4 times faster than the global average, resulting in a strong feedback on northern ecosystems such as boreal forests, which cover a vast area of the high northern latitudes. With ongoing global warming, the treeline subsequently migrates northwards into tundra areas. The consequences of turning ecosystems are complex: on the one hand, boreal forests are storing large amounts of global terrestrial carbon and act as a carbon sink, dragging carbon dioxide out of the global carbon cycle, suggesting an enhanced carbon uptake with increased tree cover. On the other hand, with the establishment of trees, the albedo effect of tundra decreases, leading to enhanced soil warming. Meanwhile, permafrost thaws, releasing large amounts of previously stored carbon into the atmosphere. So far, mainly vegetation dynamics have been assessed when studying the impact of warming onto ecosystems. Most land plants are living in close symbiosis with bacterial and fungal communities, sustaining their growth in nutrient poor habitats. However, the impact of climate change on these subsoil communities alongside changing vegetation cover remains poorly understood. Therefore, a better understanding of soil community dynamics on multi millennial timescales is inevitable when addressing the development of entire ecosystems. Unravelling long-term cross-kingdom dependencies between plant, fungi, and bacteria is not only a milestone for the assessment of warming on boreal ecosystems. On top, it also is the basis for agriculture strategies to sustain society with sufficient food in a future warming world. The first objective of this thesis was to assess ancient DNA as a proxy for reconstructing the soil microbiome (Manuscripts I, II, III, IV). Research findings across these projects enable a comprehensive new insight into the relationships of soil microorganisms to the surrounding vegetation. First, this was achieved by establishing (Manuscript I) and applying (Manuscript II) a primer pair for the selective amplification of ancient fungal DNA from lake sediment samples with the metabarcoding approach. To assess fungal and plant co-variation, the selected primer combination (ITS67, 5.8S) amplifying the ITS1 region was applied on samples from five boreal and arctic lakes. The obtained data showed that the establishment of fungal communities is impacted by warming as the functional ecological groups are shifting. Yeast and saprotroph dominance during the Late Glacial declined with warming, while the abundance of mycorrhizae and parasites increased with warming. The overall species richness was also alternating. The results were compared to shotgun sequencing data reconstructing fungi and bacteria (Manuscripts III, IV), yielding overall comparable results to the metabarcoding approach. Nonetheless, the comparison also pointed out a bias in the metabarcoding, potentially due to varying ITS lengths or copy numbers per genome. The second objective was to trace fungus-plant interaction changes over time (Manuscripts II, III). To address this, metabarcoding targeting the ITS1 region for fungi and the chloroplast P6 loop for plants for the selective DNA amplification was applied (Manuscript II). Further, shotgun sequencing data was compared to the metabarcoding results (Manuscript III). Overall, the results between the metabarcoding and the shotgun approaches were comparable, though a bias in the metabarcoding was assumed. We demonstrated that fungal shifts were coinciding with changes in the vegetation. Yeast and lichen were mainly dominant during the Late Glacial with tundra vegetation, while warming in the Holocene lead to the expansion of boreal forests with increasing mycorrhizae and parasite abundance. Aside, we highlighted that Pinaceae establishment is dependent on mycorrhizal fungi such as Suillineae, Inocybaceae, or Hyaloscypha species also on long-term scales. The third objective of the thesis was to assess soil community development on a temporal gradient (Manuscripts III, IV). Shotgun sequencing was applied on sediment samples from the northern Siberian lake Lama and the soil microbial community dynamics compared to ecosystem turnover. Alongside, podzolization processes from basaltic bedrock were recovered (Manuscript III). Additionally, the recovered soil microbiome was compared to shotgun data from granite and sandstone catchments (Manuscript IV, Appendix). We assessed if the establishment of the soil microbiome is dependent on the plant taxon and as such comparable between multiple geographic locations or if the community establishment is driven by abiotic soil properties and as such the bedrock area. We showed that the development of soil communities is to a great extent driven by the vegetation changes and temperature variation, while time only plays a minor role. The analyses showed general ecological similarities especially between the granite and basalt locations, while the microbiome on species-level was rather site-specific. A greater number of correlated soil taxa was detected for deep-rooting boreal taxa in comparison to grasses with shallower roots. Additionally, differences between herbaceous taxa of the late Glacial compared to taxa of the Holocene were revealed. With this thesis, I demonstrate the necessity to investigate subsoil community dynamics on millennial time scales as it enables further understanding of long-term ecosystem as well as soil development processes and such plant establishment. Further, I trace long-term processes leading to podzolization which supports the development of applied carbon capture strategies under future global warming.
    Type of Medium: Dissertations
    Pages: xii, 198 Seiten , Illustrationen, Diagramme
    Language: English
    Note: Dissertation, Universität Potsdam, 2024 , Table of Contents Summary Deutsche Zusammenfassung 1 Introduction 1.1 Arctic ecosystems under global warming 1.2 The plant-associated microbiome 1.3 Drivers of soil development 1.4 Ancient DNA to unravel past ecosystems 1.4.1 Lake sediments as archives of past community changes 1.4.2 Metabarcoding for targeting specific communities 1.4.3 Shotgun sequencing for broader overview 1.5 Thesis objective 1.6 Thesis outline and author contributions 2 Manuscript I 2.1 Abstract 2.2 Introduction 2.3 Materials and Methods 2.3.1 Primer design and evaluation In silico analyses Evaluation of lake sediment core DNA for analyses of fungal paleoecology 2.4 Results Primer design and evaluation Evaluation of lake sediment core DNA for fungal paleoecology 2.4.1 Taxonomic resolution across the cores 2.4.2 Comprehensiveness: Rarefaction and accumulation curves 2.4.3 Amplicon length and GC content to assess bias through degradation 2.4.4 General taxonomic composition of fungi in Siberian lake sediment cores Diversity of fungal paleocommunities from lake CH12 2.5 Discussion 2.5.1 Preservation biases and potential contamination 2.5.2 Characteristics of the optimized sedaDNA ITS1 metabarcoding assay 2.5.3 Potential of lake sediment fungal DNA for paleoecology 2.6 Author contributions 2.7 Acknowledgements 2.8 Conflict of interest 2.9 References 3 Manuscript II 3.1 Abstract 3.2 Introduction 3.3 Geographic setting and study sites 3.4 Materials and Methods 3.4.1 Sampling 3.4.2 DNA extraction and amplification 3.4.3 Bioinformatic analysis 3.4.4 Assessment of negative controls and contamination 3.4.5 Statistical analysis and visualization 3.5 Results 3.5.1 Fungi: sedaDNA sequencing results and overall patterns of alpha diversity and taxonomic composition 3.5.2 Vegetation: sedaDNA sequencing results and overall patterns of alpha diversity and taxonomic composition 3.5.3 Site-specific plant-fungus covariation 3.5.3.1 Fungus and plant covariation in arctic Siberia from MIS3 to the Holocene 3.5.3.2 Quantitative relationships between fungi and plant richness and composition 3.6 Discussion 3.6.1 Fungus and plant diversity along a spatiotemporal gradient in Siberia 3.6.2 Changes in ecosystem functioning over a spatiotemporal gradient 3.6.3 Implications of our results for ecosystem functioning and future research avenues 3.7 Conclusions Funding Availability of data and material Author contribution Declaration of competing interest Acknowledgements 3.8 References 4 Manuscript III 4.1 Abstract 4.2 Introduction 4.3 Results and Discussion 4.3.1 Compositional changes of plants, fungi, and bacteria in ancient metagenomic datasets 4.3.2 Long-term soil development: a trajectory or environmentally driven processes? 4.3.3 Bioweathering supported by lichens and mycorrhiza 4.3.4 Turnover in carbon, nitrogen, and sulphur cycling 4.3.5 Tracing podzolization 4.4 Implications and conclusions 4.5 Material and methods 4.5.1 Geographical setting and study site 4.5.2 X-ray fluorescence scanning of the sediment core 4.5.3 Core sub-sampling 4.5.4 DNA extraction 4.5.5 Single stranded DNA library build 4.5.6 Bioinformatic pipeline for the analysis of the sequencing results 4.5.7 Data analysis 4.5.8 Analysis of the ancient patterns 4.5.9 Statistical analysis of the dataset Acknowledgements 4.6 References Declarations 5 Discussion and synthesis 5.1 Long-term rhizosphere establishment in tundra and taiga areas 5.1.1 SedaDNA as a proxy for soil microbiome 5.1.1.1 Fungal DNA metabarcoding 5.1.1.2 Targeting soil communities with shotgun sequencing 5.1.1.3 Comparison between metabarcoding and shotgun sequencing for the soil microbiome 5.1.2 Fungi-vegetation interaction changes over time 5.1.3 Soil development on a temporal gradient 5.2 Conclusion and future perspectives 6 References 7 Appendix 7.1 Appendix to manuscript I 7.2 Appendix to manuscript II 7.3 Appendix to manuscript III 7.4 Manuscript IV 7.4.1 Abstract 7.4.2 Introduction 7.4.3 Geographical setting and study sites 7.4.4 Material & Methods 7.4.4.1 Sub-sampling of the sediment cores 7.4.4.2 DNA extraction 7.4.4.3 Single stranded DNA library built 7.4.4.4 Bioinformatic pipeline for the analysis of the sequencing data 7.4.4.5 Data analysis 7.4.4.6 Statistical analysis of the datasets 7.4.5 Results 7.4.5.1 Compositional changes of representative plant taxa alongside dynamics in fungal ecologies and bacterial element cycling in ancient metagenomic datasets 7.4.5.2 Impact of abiotic and biotic drivers on soil establishment across geographical locations 7.4.5.3 Relative positive correlations of functional soil taxa with plants across the locations 7.4.5.4 Assessment of the plant taxon-specific microbiome across the locations 7.4.6 Discussion 7.4.6.1 Site-specific soil development 7.4.6.2 Differences in the bedrock 7.4.6.3 Correlation between the lake biota 7.4.6.3.1 General Trends in positively correlated rhizosphere taxa 7.4.6.3.2 Plant taxa specific microbiome 7.4.7 Implications and future directions 7.4.8 References 7.4.9 Supplement to manuscript IV Acknowledgements Eidesstattliche Erklärung Damage pattern analysis – Auflagen Doktorarbeit Summary Main References
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  • 9
    Call number: AWI Bio-24-95736
    Description / Table of Contents: Moss-microbe associations are often characterised by syntrophic interactions between the microorganisms and their hosts, but the structure of the microbial consortia and their role in peatland development remain unknown. In order to study microbial communities of dominant peatland mosses, Sphagnum and brown mosses, and the respective environmental drivers, four study sites representing different successional stages of natural northern peatlands were chosen on a large geographical scale: two brown moss-dominated, circumneutral peatlands from the Arctic and two Sphagnum-dominated, acidic peat bogs from subarctic and temperate zones. The family Acetobacteraceae represented the dominant bacterial taxon of Sphagnum mosses from various geographical origins and displayed an integral part of the moss core community. This core community was shared among all investigated bryophytes and consisted of few but highly abundant prokaryotes, of which many appear as endophytes of Sphagnum mosses. Moreover, brown mosses and Sphagnum mosses represent habitats for archaea which were not studied in association with peatland mosses so far. Euryarchaeota that are capable of methane production (methanogens) displayed the majority of the moss-associated archaeal communities. Moss-associated methanogenesis was detected for the first time, but it was mostly negligible under laboratory conditions. Contrarily, substantial moss-associated methane oxidation was measured on both, brown mosses and Sphagnum mosses, supporting that methanotrophic bacteria as part of the moss microbiome may contribute to the reduction of methane emissions from pristine and rewetted peatlands of the northern hemisphere. Among the investigated abiotic and biotic environmental parameters, the peatland type and the host moss taxon were identified to have a major impact on the structure of moss-associated bacterial communities, contrarily to archaeal communities whose structures were similar among the investigated bryophytes. For the first time it was shown that different bog development stages harbour distinct bacterial communities, while at the same time a small core community is shared among all investigated bryophytes independent of geography and peatland type. The present thesis displays the first large-scale, systematic assessment of bacterial and archaeal communities associated both with brown mosses and Sphagnum mosses. It suggests that some host-specific moss taxa have the potential to play a key role in host moss establishment and peatland development.
    Description / Table of Contents: Während die Beziehungen zwischen Moosen und den mit ihnen assoziierten Mikroorganismen oft durch syntrophische Wechselwirkungen charakterisiert sind, ist die Struktur der Moos-assoziierten mikrobiellen Gemeinschaften sowie deren Rolle bei der Entstehung von Mooren weitgehend unbekannt. Die vorliegende Arbeit befasst sich mit mikrobiellen Gemeinschaften, die mit Moosen nördlicher, naturnaher Moore assoziiert sind, sowie mit den Umweltfaktoren, die sie beeinflussen. Entlang eines groß angelegten geographischen Gradienten, der von der Hocharktis bis zur gemäßigten Klimazone reicht, wurden vier naturbelassene Moore als Probenstandorte ausgesucht, die stellvertretend für verschiedene Stadien der Moorentwicklung stehen: zwei Braunmoos-dominierte Niedermoore mit nahezu neutralem pH-Wert sowie zwei Sphagnum-dominierte Torfmoore mit saurem pH-Wert. Die Ergebnisse der vorliegenden Arbeit machen deutlich, dass die zu den Bakterien zählenden Acetobacteraceae das vorherrschende mikrobielle Taxon der Sphagnum-Moose gleich welchen geographischen Ursprungs darstellen und insbesondere innerhalb des Wirtsmoosgewebes dominieren. Gleichzeitig gehörten die Acetobacteraceae zum wesentlichen Bestandteil der mikrobiellen Kerngemeinschaft aller untersuchten Moose, die sich aus einigen wenigen Arten, dafür zahlreich vorkommenden Prokaryoten zusammensetzt. Die vorliegende Arbeit zeigt zudem erstmals, dass sowohl Braunmoose als auch Torfmoose ein Habitat für Archaeen darstellen. Die Mehrheit der Moos-assoziierten Archaeen gehörte dabei zu den methanbildenden Gruppen, wenngleich die metabolischen Aktivitätsraten unter Laborbedingungen meistens kaum messbar waren. Im Gegensatz hierzu konnte die Bakterien-vermittelte Methanoxidation sowohl an Braunmoosen als auch an Sphagnum-Moosen gemessen werden. Dies zeigt eindrucksvoll, dass Moos-assoziierte Bakterien potenziell zur Minderung von Methanemissionen aus nördlichen, aber auch wiedervernässten Mooren beitragen können. Ein weiteres wichtiges Resultat der vorliegenden Arbeit ist die Bedeutung des Moortyps (Niedermoor oder Torfmoor), aber auch der Wirtsmoosart selbst für die Struktur der Moos-assoziierten Bakteriengemeinschaften, während die archaeellen Gemeinschaftsstrukturen weder vom Moortyp noch von der Wirtsmoosart beeinflusst wurden und sich insgesamt deutlich ähnlicher waren als die der Bakterien. Darüber hinaus konnte erstmalig gezeigt werden, dass sich die bakteriellen Gemeinschaften innerhalb der unterschiedlichen Moorsukzessionsstadien zwar ganz erheblich voneinander unterscheiden, ein kleiner Teil der Bakterien dennoch Kerngemeinschaften bilden, die mit allen untersuchten Moosarten assoziiert waren. Bei der hier präsentierten Arbeit handelt es sich um die erste systematische Studie, die sich auf einer großen geographischen Skala mit den bakteriellen und archaeellen Gemeinschaften von Braunmoosen und Torfmoosen aus naturbelassenen nördlichen Mooren befasst. Die vorliegenden Ergebnisse machen deutlich, dass die untersuchten Moose ein ganz spezifisches mikrobielles Konsortium beherbergen, welches mutmaßlich eine Schlüsselrolle bei der Etablierung der Wirtspflanzen am Anfang der Moorentwicklung spielt und darüber hinaus das Potential hat, die charakteristischen Eigenschaften von Mooren sowie deren weitere Entwicklung zu prägen.
    Type of Medium: Dissertations
    Pages: XX, 139, liv Seiten , Illustrationen, Diagramme
    Language: English
    Note: Dissertation, Universität Potsdam, 2024 , Content Preface Acknowledgements Summary Zusammenfassung Abbreviations 1. Introduction 1.1. Peatlands 1.1.1. Peatland development and peat bog succession 1.1.2. Characteristic peatlands of the northern hemisphere 1.1.3. Anthropogenic threats of northern peatlands 1.1.4. Peat bog restoration 1.2. Peatland bryophytes 1.2.1. Brown mosses 1.2.2. Sphagnum mosses 1.3. Moss microbiota 1.3.1. Moss-associated bacteria 1.3.2. Moss-associated archaea 1.3.3. Endophytic prokaryotic communities 1.4. Biotic and abiotic influences on moss-associated microorganisms 1.5. Objectives 1.6. Study sites 1.6.1. High Arctic peatlands of Svalbard (SV) 1.6.2. Polygonal Tundra of Samoylov (SA) 1.6.3. Palsa Bogs of Neiden (NEI) 1.6.4. Kettle Bog Peatlands of Mueritz National Park (MUE) 2. Material and Methods 2.1. Sampling scheme overview 2.2. Sampling of pore water 2.3. Sampling of moss plantlets 2.4. Analysis of pore water chemistry 2.5. Cell wall analysis 2.5.1. Cation exchange capacity (CEC) 2.5.2. Holocellulose (HC) 2.5.3. Lignin and Lignin-like polymers (LLP) 2.5.4. Bulk moss litter analysis 2.6. Moss surface sterilisation and separation of putative epiphytic and endophytic microbial communities 2.7. DNA extraction and sequencing 2.8. Sequence analyses and bioinformatics 2.9. Statistical analyses 2.10. Potential methane production and oxidation assays 2.10.1. Surface sterilisation prior to activity tests 2.10.2. Methane production 2.10.3. Methane oxidation 3. Results 3.1. Peatland bulk and pore water characteristics 3.2. Diversity and structure of natural peatland microbial communities 3.3. Environmental drivers of moss-associated microbial communities 3.4. Microbial taxa associated with brown mosses and Sphagnum mosses 3.4.1. Moss-associated bacteria 3.4.2. Moss-associated archaea 3.4.3. Bacterial and archaeal core communities 3.4.4. Acetobacteraceae as dominant taxon of the bacterial core community 3.5. Sphagnum bacteriomes of disturbed, rewetted and pristine temperate kettle bog 3.6. Potential moss-associated methane production and methane oxidation rates 3.6.1. Moss-associated methane production 3.6.2. Moss-associated methane oxidation 4. Discussion 4.1. Environmental influences on moss-associated bacterial communities 4.2. Moss-associated archaeal communities and their environmental drivers 4.3. Distinct patterns of endophytic bacteria 4.4. The core microbiota and their possible role for peatland succession 4.5. The potential role of Acetobacteraceae for Sphagnum host mosses and bog ecosystems 4.6. Moss-associated microbial communities of the methane cycle and their potential metabolic activity 4.7. Diversity and structure of Sphagnum bacteriomes from pristine, disturbed and rewetted kettle bogs 5. Conclusion 6. Critical remarks and outlook 6.1. Critical remarks 6.2. Outlook Bibliography Supplementary
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  • 10
    Call number: AWI G3-24-95700
    Description / Table of Contents: With Arctic ground as a huge and temperature-sensitive carbon reservoir, maintaining low ground temperatures and frozen conditions to prevent further carbon emissions that contrib-ute to global climate warming is a key element in humankind’s fight to maintain habitable con-ditions on earth. Former studies showed that during the late Pleistocene, Arctic ground condi-tions were generally colder and more stable as the result of an ecosystem dominated by large herbivorous mammals and vast extents of graminoid vegetation – the mammoth steppe. Characterised by high plant productivity (grassland) and low ground insulation due to animal-caused compression and removal of snow, this ecosystem enabled deep permafrost aggrad-ation. Now, with tundra and shrub vegetation common in the terrestrial Arctic, these effects are not in place anymore. However, it appears to be possible to recreate this ecosystem local-ly by artificially increasing animal numbers, and hence keep Arctic ground cold to reduce or-ganic matter decomposition and carbon release into the atmosphere. By measuring thaw depth, total organic carbon and total nitrogen content, stable carbon iso-tope ratio, radiocarbon age, n-alkane and alcohol characteristics and assessing dominant vegetation types along grazing intensity transects in two contrasting Arctic areas, it was found that recreating conditions locally, similar to the mammoth steppe, seems to be possible. For permafrost-affected soil, it was shown that intensive grazing in direct comparison to non-grazed areas reduces active layer depth and leads to higher TOC contents in the active layer soil. For soil only frozen on top in winter, an increase of TOC with grazing intensity could not be found, most likely because of confounding factors such as vertical water and carbon movement, which is not possible with an impermeable layer in permafrost. In both areas, high animal activity led to a vegetation transformation towards species-poor graminoid-dominated landscapes with less shrubs. Lipid biomarker analysis revealed that, even though the available organic material is different between the study areas, in both permafrost-affected and sea-sonally frozen soils the organic material in sites affected by high animal activity was less de-composed than under less intensive grazing pressure. In conclusion, high animal activity af-fects decomposition processes in Arctic soils and the ground thermal regime, visible from reduced active layer depth in permafrost areas. Therefore, grazing management might be utilised to locally stabilise permafrost and reduce Arctic carbon emissions in the future, but is likely not scalable to the entire permafrost region.
    Type of Medium: Dissertations
    Pages: X, 104, A-57 Seiten , Illustrationen, Diagramme
    Language: English
    Note: Dissertation, Universität Potsdam, 2024 , Table of contents ABSTRACT ZUSAMMENFASSUNG ABBREVIATIONS AND NOMENCLATURE CHAPTER 1: INTRODUCTION 1.1 SCIENTIFIC BACKGROUND 1.1.1 ARCTIC GROUND 1.1.2 THE PHENOMENON OF PERMAFROST 1.1.3 ARCTIC NON - PERMAFROST AREAS 1.1.4 HYPOTHESIS 1.2 AIMS AND OBJECTIVES 1.3 METHODS 1.3.1 FIELD METHODS AND SAMPLING APPROACH 1.3.2 STUDY AREA SELECTION 1.3.3 LABORATORY METHODS 1.4 THESIS ORGANISATION CHAPTER 2: LARGE HERBIVORES ON PERMAFROST – A PILOT STUDY OF GRAZING IMPACTS ON PERMAFROST SOIL CARBON STORAGE IN NORTHEASTERN SIBERIA 2.1 ABSTRACT 2.2 I NTRODUCTION 2.3 STUDY AREA 2.4 METHODS 2.4.1 FIELD SAMPLING APPROACH 2.4.2 LABORATORY WORK 2.4.3 DATA ANALYSIS AND EXTERNAL DATA 2.5 RESULTS 2.5.1 VEGETATION ASSESSMENT 2.5.2 SEASONAL THAW DEPTH 2.5.3 CARBON PARAMETERS (TOC, TOC/TN RATIOS , AND Δ13 C RATIOS ) 2.5.4 GRAIN SIZE DISTRIBUTION AND WATER CONTENT 2.5.5 STATISTICS AND CORRELATION ANALYSIS 2.6 DISCUSSION 2.6.1 EFFECTS OF GRAZING ON VEGETATION STRUCTURE AND PERMAFROST THAW 2.6.2 CARBON ACCUMULATION UNDER GRAZING IMPACT 2.6.3 METHODOLOGICAL LIMITATIONS OF THE PILOT STUDY 2.7 CONCLUSION 2.8 DATA AVAILABILITY STATEMENT 2.9 AUTHOR CONTRIBUTIONS 2.10 FUNDING 2.11 ACKNOWLEDGEMENTS 2.12 CONFLICT OF INTERESTS CHAPTER 3: IMPACTS OF REINDEER ON SOIL CARBON STORAGE IN THE SEASONALLY FROZEN GROUND OF NORTHERN FINLAND: A PILOT STUDY 3.1 ABSTRACT 3.2 I NTRODUCTION 3.3 STUDY AREA 3.4 METHODS 3.4.1 FIELD WORK 3.4.2 LABORATORY ANALYSIS 3.4.3 DATA ANALYSIS AND CALCULATIONS 3.5 RESULTS 3.5.1 CORE DESCRIPTIONS 3.5.2 VEGETATION 3.5.3 CARBON PARAMETERS 3.5.6 COMPARATIVE DATA ANALYSIS 3.6 DISCUSSION 3.6.1 REINDEER IMPACT ON SOIL CARBON STORAGE 3.6.2 REINDEER IMPACT ON VEGETATION 3.6.3 REINDEER IMPACT ON GROUND CHARACTERISTICS 3.6.4 SOC DENSITY AND STOCKS ACROSS THE KUTUHARJU STATION AREA 3.6.5 METHODOLOGICAL LIMITATIONS OF THE PILOT STUDY DESIGN 3.6.6 IMPLICATIONS OF THE PILOT STUDY FOR FUTURE RESEARCH 3.7 CONCLUSION 3.8 DATA AVAILABILITY 3.9 AUTHOR CONTRIBUTION 3.10 COMPETING INTERESTS 3.11 ACKNOWLEDGEMENTS 3.12 FUNDING TABLE 3-1 TABLE 3-2 TABLE 3-3 CHAPTER 4: LIPID BIOMARKER SCREENING TO TRACE RECENT LARGE HERBIVORE INFLUENCE ON SOIL CARBON IN PERMAFROST AND SEASONALLY FROZEN ARCTIC GROUND 4.1 ABSTRACT 4.2 I NTRODUCTION 4.3 STUDY AREA 4.4 METHODS 4.4.1 SAMPLING APPROACH 4.4.2 LABORATORY ANALYSIS 4.4.3 LIPID BIOMARKER INDICES 4.4.4 STATISTICS 4.5 RESULTS 4.5.1 TOC 4.5.2 C/N RATIO 4.5.3 STABLE CARBON ISOTOPE RATIO 4.5.4 ABSOLUTE N- ALKANE CONCENTRATION 4.5.5 AVERAGE CHAIN LENGTH 4.5.6 CARBON PREFERENCE INDEX 4.5.7 HIGHER - PLANT ALCOHOL INDEX 4.5.8 STATISTICAL RESULTS 4.6 DISCUSSION 4.6.1 EFFECTS OF GRAZING INTENSITY ON BIOMARKER SIGNALS 4.6.2 EFFECTS OF GROUND THERMAL REGIME ON SOIL OM DEGRADATION 4.6.3 I MPACT OF HERBIVORY ON PERMAFROST OM STORAGE 4.7 CONCLUSION 4.8 ACKNOWLEDGEMENTS 4.9 COMPETING INTERESTS 4.10 AUTHOR CONTRIBUTION 4.11 FUNDING 4.12 DATA AVAILABILITY CHAPTER 5: SYNTHESIS 5.1 ECOSYSTEM CHANGES UNDER THE IMPACT OF LARGE HERBIVORES 5.2 GRAZING EFFECTS ON SOIL ORGANIC MATTER DECOMPOSITION 5.3 F EASIBILITY OF UTILISING HERBIVORY IN THE ARCTIC 5.4 RESEARCH IMPLICATIONS FOR SUCCESSFUL PLANNING AND USE OF ARCTIC HERBIVORY REFERENCES 93 FINANCIAL AND TECHNICAL SUPPORT APPENDIX 1 APPENDIX I ORGANIC CARBON CHARACTERISTICS IN ICE - RICH PERMAFROST IN ALAS AND YEDOMA DEPOSITS , CENTRAL YAKUTIA, SIBERIA APPENDIX II WHAT ARE THE EFFECTS OF HERBIVORE DIVERSITY ON TUNDRA ECOSYSTEMS ? A SYSTEMATIC REVIEW (ABSTRACT) APPENDIX III SUPPLEMENTARY MATERIAL TO CHAPTER 2: LARGE HERBIVORES ON PERMAFROST – A PILOT STUDY OF GRAZING IMPACTS ON PERMAFROST SOIL CARBON STORAGE IN NORTHEASTERN SIBERIA APPENDIX IV SUPPLEMENTARY MATERIAL TO CHAPTER 3: IMPACTS OF REINDEER ON SOIL CARBON STORAGE IN THE SEASONALLY FROZEN GROUND OF NORTHERN FINLAND : A PILOT STUDY APPENDIX V SUPPLEMENTARY MATERIAL TO CHAPTER 4: A PILOT STUDY OF LIPID BIOMARKERS TO TRACE RECENT LARGE HERBIVORE INFLUENCE ON SOIL CARBON IN PERMAFROST AND SEASONALLY ROZEN ARCTIC GROUND APPENDIX VI SUPPLEMENTARY MATERIAL TO APPENDIX IV: ORGANIC CARBON CHARACTERISTICS IN ICE - RICH PERMAFROST IN ALAS AND YEDOMA DEPOSITS , CENTRAL YAKUTIA, SIBERIA ACKNOWLEDGEMENTS - DANKSAGUNG
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