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  • 1
    Publication Date: 2021-03-29
    Description: We present the VECMA toolkit (VECMAtk), a flexible software environment for single and multiscale simulations that introduces directly applicable and reusable procedures for verification, validation (V&V), sensitivity analysis (SA) and uncertainty quantication (UQ). It enables users to verify key aspects of their applications, systematically compare and validate the simulation outputs against observational or benchmark data, and run simulations conveniently on any platform from the desktop to current multi-petascale computers. In this sequel to our paper on VECMAtk which we presented last year [ 1 ] we focus on a range of functional and performance improvements that we have introduced, cover newly introduced components, and applications examples from seven different domains such as conflict modelling and environmental sciences. We also present several implemented patterns for UQ/SA and V&V, and guide the reader through one example concerning COVID-19 modelling in detail. This article is part of the theme issue ‘Reliability and reproducibility in computational science: implementing verification, validation and uncertainty quantification in silico ’.
    Print ISSN: 1364-503X
    Electronic ISSN: 1471-2962
    Topics: Mathematics , Physics , Technology
    Published by The Royal Society
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  • 2
    ISSN: 1573-8256
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine , Technology
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Hoboken, NJ : Wiley-Blackwell
    Journal of Biomedical Materials Research 4 (1970), S. 145-187 
    ISSN: 0021-9304
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine , Technology
    Notes: The influences of the conditioning treatments, surface topography, and crystal structure of carbonaceous surfaces on their ability to sorb heparin and their in vivo compatibility with blood were investigated. The results of the sorption studies indicated that the adsorption of heparin on the surfaces of turbostratic and graphitic materials is not crystallographically selective and that the amount adsorbed on relatively smooth surfaces is near the amount expected for monolayer formation. Although the adsorption of heparin on relatively smooth carbon surfaces is not influenced by the presence of benzalkonium chloride, the sorption of heparin in porous carbons can be greatly increased by a pretreatment with benzalkonium chloride. This increase was found to be due to the formation and entrapment of the insoluble heparin-benzalkonium complex in the accessible porosity. Since the heparin sorptions in Dag-154 coatings were found to be enhanced by a pretreatment with benzalkonium chloride, it was inferred that these coatings contain accessible porosity and that their initial thromboresistance depends on the formation of the benzalkonium-heparin complex in pores. In vivo tests showed that polished and outgassed, impermeable isotropic carbons deposited at low temperatures were significantly thromboresistant without the exogenous application of heparin. There was no relationship between the amount of heparin sorbed on these materials and their compatibility with blood. Polishing, for example, which reduced heparin sorption, enhanced the thromboresistance of these carbons, and while chemisorption of oxygen markedly reduced their thromboresistance, it did not influence the amount of heparin that could be sorbed. Although the heparin-benzalkonium complex sorbed in a porous carbon conferred excellent thromoboresistance in a 2-hr test, the long-tern (14-day) compatibility was not as good as for carbon surfaces that were deposited at low temperatures and then polished and outgassed prior to implanting. In vivo tests of HTI carbon structures and annealed LTI carbons indicate that the blood compatibility of a turbostratic carbon is not significantly dependent on crystallite size, Le. Limited tests of surfaces that had a preponderance of c-faces oriented parallel to the blood-carbon interface at the surface suggest that orientations of this sort are better than others.
    Additional Material: 15 Ill.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Hoboken, NJ : Wiley-Blackwell
    Journal of Biomedical Materials Research 17 (1983), S. 59-70 
    ISSN: 0021-9304
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine , Technology
    Notes: Porous high-density polyethylene specimens were implanted in the femurs of mongrel canines. At the end of the residency period (3 or 6 months), the animals were sacrificed and the implants were retrieved. The work-of-fracture of the implant specimens was then determined using the technique of Tattersall and Tappin. The work required to fracture a specimen in three-point bending by controlled crack propagation through a triangular cross section was obtained directly from the load-deflection curve. The area of the resulting fracture surface was measured by macro-photographic techniques, and the work-of-fracture was calculated as work per unit area. The implants were subsequently sectioned and examined microradiographically to determine the extent of bone ingrowth. Bone specimens adjacent to the implants and porous high-density polyethylene controls (no ingrowth) were also tested to determine their work-of-fracture. The results showed that bone adjacent to the implant specimens had a higher work-of-fracture than normal medial, canine femoral bone and was not appreciably different from the composite. The work-of-fracture of porous high-density polyethylene was not significantly increased by an increase in bone infiltration, and this anomalous behavior was attributed to a degradation of the polyethylene during implant residence. Control studies supported this hypothesis.
    Additional Material: 7 Ill.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Hoboken, NJ : Wiley-Blackwell
    Journal of Biomedical Materials Research 21 (1987), S. 683-700 
    ISSN: 0021-9304
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine , Technology
    Notes: This study examines the interaction of human low density lipoprotein (LDL) with a select group of biomedical polymers. The adsorption characteristics of LDL on cured filler-free poly(dimethyl Siloxane) (C-PDMS), Biomer, Cardiomat 610, Kraton 1650, poly(hydroxyethyl methacrylate) (PHEMA) and glass are presented. Adsorption of LDL to charged hydrophilic glass control surfaces occurred rapidly, reaching plateau concentrations within one minute (0.19 ± 0.01 ug/cm2). Adsorption of LDL to polymer surfaces appeared to be dependent upon both the polymer hydrophobicity (or apolar nature), and flexibility (or dynamic nature) at the interface. Increased surface concentrations were observed for Biomer (0.32 ± 0.01 ug/cm2) as well as other polymers which exhibited both hydrophobic and elastomeric próperties. Temperature changes between 25°C and 37°C were found to significantly influence the surface concentration of LDL on Biomer (0.16 ± 0.01 ug/cm2 at 25°C versus 0.32 ± 0.01 ug/cm2 at 37°C). A lipid core phase transition at 36°C was believed to be responsible for the temperature influence. Preliminary competitive adsorption studies of LDL with albumin (HSA) and serum on silicone surfaces suggests that LDL adsorption occurred rapidly and preferentially (0.25 ± 0.01 ug/cm2 for LDL alone; 0.33 ± 0.01 ug/cm2 for LDL + HSA; 0.15 ± 0.01 ug/cm2 LDL + serum). Preliminary studies on the role of LDL in calcification were not conclusive. It can be concluded that LDL adsorption is dependent upon polymer hydrophobicity, flexibility and temperature. Competitive adsorption experiments suggests that LDL may have substantial influence on protein adsorption.
    Additional Material: 10 Ill.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Hoboken, NJ : Wiley-Blackwell
    Journal of Biomedical Materials Research 3 (1969), S. 497-528 
    ISSN: 0021-9304
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine , Technology
    Notes: The influences of conditioning treatments and surface topography on the heparin adsorptivity and the thromboresistance of a high-strength, impermeable, isotropic, pyrolytic carbon were investigated. The results of the adsorption studies indicate that the adsorption of heparin on such carbon surfaces is near the amount required for monolayer formation. The adsorbed heparin is rapidly elutriated in plasma. The heparin adsorption is not enhanced by a pretreatment with benzalkonium chloride. There was no relationship between the amount of heparin adsorbed on these materials and their compatibility with blood. Polishing, for example, which reduced heparin adsorption, enhanced the tromboresistance of these carbons, and while chemisorption of oxygen markedly reduced their thromboresistance, it did not influence the amount of heparin that could be adsorbed. In vivo tests showed that polished and outgassed, impermeable isotropic carbons deposited at low temperatures were significantly thromboresistant without the exogenous application of heparin. Examples of applications of these new materials in experimental valves are presented.
    Additional Material: 11 Ill.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Hoboken, NJ : Wiley-Blackwell
    Journal of Biomedical Materials Research 16 (1982), S. 381-398 
    ISSN: 0021-9304
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Medicine , Technology
    Notes: Numerous hypotheses exist to explain observed blood-materials interactions. It is the purpose of this article to test two popular hypotheses, namely, the minimum interfacial free energy hypothesis and the optimum polar/apolar ratio hypothesis. Methacrylate polymers and copolymers were characterized using the captive bubble underwater contact angle method; bulk water content was determined by gravimetric methods; streaming potential measurements were made; and surface roughness and possible particulate contamination were evaluated by reflected light microscopy. In vitro blood tests include whole blood clotting time measurements on polymer-coated tubes; centrifugal force platelet adhesion on polymer-coated coverslips; and a measure of the partial thromboplastin time, Russell's viper venom time (Stypven time), and the prothrombin time of native whole blood exposed to polymer-coated microscope slides. Results suggest that platelet adhesion correlates in the opposite direction of whole blood clotting time and partial thromboplastin time, emphasizing the need for a multiparameter approach to blood-materials testing. Based on these tests the minimum interfacial free energy hypothesis is not supported. In fact, the data suggest the opposite to be true. It is apparent that platelet adhesion can be a misleading indicator of blood compatibility. Neither hypotheses can explain the apparent conflict between the platelet adhesion data and the coagulation time data.
    Additional Material: 9 Ill.
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  • 8
    Publication Date: 2020-12-07
    Description: Laser-direct drive (LDD), along with laser indirect (X-ray) drive (LID) and magnetic drive with pulsed power, is one of the three viable inertial confinement fusion approaches to achieving fusion ignition and gain in the laboratory. The LDD programme is primarily being executed at both the Omega Laser Facility at the Laboratory for Laser Energetics and at the National Ignition Facility (NIF) at Lawrence Livermore National Laboratory. LDD research at Omega includes cryogenic implosions, fundamental physics including material properties, hydrodynamics and laser–plasma interaction physics. LDD research on the NIF is focused on energy coupling and laser–plasma interactions physics at ignition-scale plasmas. Limited implosions on the NIF in the ‘polar-drive’ configuration, where the irradiation geometry is configured for LID, are also a feature of LDD research. The ability to conduct research over a large range of energy, power and scale size using both Omega and the NIF is a major positive aspect of LDD research that reduces the risk in scaling from OMEGA to megajoule-class lasers. The paper will summarize the present status of LDD research and plans for the future with the goal of ultimately achieving a burning plasma in the laboratory. This article is part of a discussion meeting issue ‘Prospects for high gain inertial fusion energy (part 2)’.
    Print ISSN: 1364-503X
    Electronic ISSN: 1471-2962
    Topics: Mathematics , Physics , Technology
    Published by The Royal Society
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  • 9
    Publication Date: 2020-12-21
    Description: The instrumental advances made in this new era of 4 m class solar telescopes with unmatched spectropolarimetric accuracy and sensitivity will enable the study of chromospheric magnetic fields and their dynamics with unprecedented detail. In this regard, spectropolarimetric diagnostics can provide invaluable insight into magneto-hydrodynamic (MHD) wave processes. MHD waves and, in particular, Alfvénic fluctuations associated with particular wave modes were recently recognized as important mechanisms not only for the heating of the outer layers of the Sun’s atmosphere and the acceleration of the solar wind, but also for the elemental abundance anomaly observed in the corona of the Sun and other Sun-like stars (also known as first ionization potential) effect. Here, we take advantage of state-of-the-art and unique spectropolarimetric Interferometric BIdimensional Spectrometer observations to investigate the relation between intensity and circular polarization (CP) fluctuations in a sunspot chromosphere. Our results show a clear link between the intensity and CP fluctuations in a patch which corresponds to a narrow range of magnetic field inclinations. This suggests the presence of Alfvénic perturbations in the sunspot. This article is part of the Theo Murphy meeting issue ‘High-resolution wave dynamics in the lower solar atmosphere’.
    Print ISSN: 1364-503X
    Electronic ISSN: 1471-2962
    Topics: Mathematics , Physics , Technology
    Published by The Royal Society
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  • 10
    Publication Date: 1981-01-01
    Print ISSN: 0015-7899
    Electronic ISSN: 1434-0860
    Topics: Technology
    Published by Springer
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