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  • Articles  (1,069,783)
  • Springer Nature  (1,067,166)
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  • 1
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    Springer Nature
    In:  EPIC3Nature Communications, Springer Nature, 15(1), pp. 3232-3232, ISSN: 2041-1723
    Publication Date: 2024-05-31
    Description: Sea-level rise submerges terrestrial permafrost in the Arctic, turning it into subsea permafrost. Subsea permafrost underlies ~ 1.8 million km2 of Arctic continental shelf, with thicknesses in places exceeding 700 m. Sea-level variations over glacial-interglacial cycles control subsea permafrost distribution and thickness, yet no permafrost model has accounted for glacial isostatic adjustment (GIA), which deviates local sea level from the global mean due to changes in ice and ocean loading. Here we incorporate GIA into a pan-Arctic model of subsea permafrost over the last 400,000 years. Including GIA significantly reduces present-day subsea permafrost thickness, chiefly because of hydro-isostatic effects as well as deformation related to Northern Hemisphere ice sheets. Additionally, we extend the simulation 1000 years into the future for emissions scenarios outlined in the Intergovernmental Panel on Climate Change’s sixth assessment report. We find that subsea permafrost is preserved under a low emissions scenario but mostly disappears under a high emissions scenario.
    Repository Name: EPIC Alfred Wegener Institut
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  • 2
    Publication Date: 2024-05-29
    Description: In this article the author name Matthew Mazloff was incorrectly written as Matthew Mazloeff. The original article has been corrected.
    Repository Name: EPIC Alfred Wegener Institut
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  • 3
    Publication Date: 2024-05-29
    Description: Correction to: Scientific Data, published online 22 June 2023 The original version showed the wrong image for Figure 3, with the image for Figure 4 used for both. This has been corrected in the pdf and HTML versions of the article, with the correct version of Figure 3 replacing the duplicated figure. The dates in the figure captions were also incorrect and have been amended as follows: Figure 3 caption: “from 2019-10-25 - 2020-07-30” modified to “from 2019-10-25 - 2020-05-15” Figure 4 caption: “from 2020-02-25 - 2020-07-30” modified to “from 2020-06-13 - 2020-07-30”.
    Repository Name: EPIC Alfred Wegener Institut
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  • 4
    Publication Date: 2024-05-29
    Description: Snow plays an essential role in the Arctic as the interface between the sea ice and the atmosphere. Optical properties, thermal conductivity and mass distribution are critical to understanding the complex Arctic sea ice system’s energy balance and mass distribution. By conducting measurements from October 2019 to September 2020 on the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition, we have produced a dataset capturing the year-long evolution of the physical properties of the snow and surface scattering layer, a highly porous surface layer on Arctic sea ice that evolves due to preferential melt at the ice grain boundaries. The dataset includes measurements of snow during MOSAiC. Measurements included profiles of depth, density, temperature, snow water equivalent, penetration resistance, stable water isotope, salinity and microcomputer tomography samples. Most snowpit sites were visited and measured weekly to capture the temporal evolution of the physical properties of snow. The compiled dataset includes 576 snowpits and describes snow conditions during the MOSAiC expedition.
    Repository Name: EPIC Alfred Wegener Institut
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  • 5
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    Springer Nature
    In:  EPIC3Communications Biology, Springer Nature, 5(1), pp. 562-, ISSN: 2399-3642
    Publication Date: 2024-05-10
    Description: Animal behavior in space and time is structured by the perceived day/night cycle. However, this is modified by the animals’ own movement within its habitat, creating a realized diel light niche (RDLN). To understand the RDLN, we investigated the light as experienced by zooplankton undergoing synchronized diel vertical migration (DVM) in an Arctic fjord around the spring equinox. We reveal a highly dampened light cycle with diel changes being about two orders of magnitude smaller compared to the surface or a static depth. The RDLN is further characterized by unique wavelength-specific irradiance cycles. We discuss the relevance of RDLNs for animal adaptations and interactions, as well as implications for circadian clock entrainment in the wild and laboratory.
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  • 6
    Publication Date: 2024-05-10
    Description: The moon’s monthly cycle synchronizes reproduction in countless marine organisms. The mass-spawning bristle worm Platynereis dumerilii uses an endogenous monthly oscillator set by full moon to phase reproduction to specific days. But how do organisms recognize specific moon phases? We uncover that the light receptor L-Cryptochrome (L-Cry) discriminates between different moonlight durations, as well as between sun- and moonlight. A biochemical characterization of purified L-Cry protein, exposed to naturalistic sun- or moonlight, reveals the formation of distinct sun- and moonlight states characterized by different photoreduction- and recovery kinetics of L-Cry’s cofactor Flavin Adenine Dinucleotide. In Platynereis, L-Cry’s sun- versus moonlight states correlate with distinct subcellular localizations, indicating different signaling. In contrast, r-Opsin1, the most abundant ocular opsin, is not required for monthly oscillator entrainment. Our work reveals a photo-ecological concept for natural light interpretation involving a “valence interpreter” that provides entraining photoreceptor(s) with light source and moon phase information.
    Repository Name: EPIC Alfred Wegener Institut
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  • 7
    Publication Date: 2024-05-10
    Description: The right timing of animal physiology and behaviour ensures the stability of populations and ecosystems. To predict anthropogenic impacts on these timings, more insight is needed into the interplay between environment and molecular timing mechanisms. This is particularly true in marine environments. Using high-resolution, long-term daylight measurements from a habitat of the marine annelid Platynereis dumerilii, we found that temporal changes in ultraviolet A (UVA)/deep violet intensities, more than longer wavelengths, can provide annual time information, which differs from annual changes in the photoperiod. We developed experimental set-ups that resemble natural daylight illumination conditions, and automated, quantifiable behavioural tracking. Experimental reduction of UVA/deep violet light (approximately 370–430 nm) under a long photoperiod (16 h light and 8 h dark) significantly decreased locomotor activities, comparable to the decrease caused by a short photoperiod (8 h light and 16 h dark). In contrast, altering UVA/deep violet light intensities did not cause differences in locomotor levels under a short photoperiod. This modulation of locomotion by UVA/deep violet light under a long photoperiod requires c-opsin1, a UVA/deep violet sensor employing Gi signalling. C-opsin1 also regulates the levels of rate-limiting enzymes for monogenic amine synthesis and of several neurohormones, including pigment-dispersing factor, vasotocin (vasopressin/oxytocin) and neuropeptide Y. Our analyses indicate a complex inteplay between UVA/deep violet light intensities and photoperiod as indicators of annual time.
    Repository Name: EPIC Alfred Wegener Institut
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  • 8
    Publication Date: 2024-05-08
    Description: The original version of this Article contained an error in Fig. 4, in which the y-axis should read “INPs (L−1 of air)” instead of “INPs x 10−3 (L−1 of air)”. This has been corrected in both the PDF and HTML versions of the Article.
    Repository Name: EPIC Alfred Wegener Institut
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  • 9
    Publication Date: 2024-05-08
    Description: The authors regret an error in the published article, where incorrect data was used to produce Figure 2, showing the temporal development of pH over the duration of the experiment. The corrected Fig. 2 shows that the error did not affect the interpretation of nor the conclusions drawn from the present dataset. The original article has been corrected.
    Repository Name: EPIC Alfred Wegener Institut
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  • 10
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    Springer Nature
    In:  EPIC3Ocean Dynamics, Springer Nature, 72(8), pp. 577-597, ISSN: 1616-7341
    Publication Date: 2024-05-08
    Description: One of the major challenges facing global hydrodynamic tidal models is the modelling of the interaction between sea ice and tides in high-latitude waters. Recent studies have shown strong seasonal correlation between sea ice and tides. Hence, it is important to accurately model the effect of sea ice in a tidal model. Presence of sea ice leads to a frictional dissipation of tides. Most models either completely ignore sea ice or partly include it by assuming a fixed sea ice cover (landfast ice). However, sea ice can also be drifting and the nature of dissipation between drifting sea ice and tides is partly unknown. We assess the dissipation of tides due to free drift sea ice. In the absence of wind, this is negligible in the deeper and open ocean. For the shallow water regions, however, this dissipation is unknown. Here, we evaluate this dissipation for the Spitzbergen Shelf region using a beacon dataset showing strong free drift subdaily sea ice oscillations and a physics based point ice model. Two analyses were done which compared the model and observed motion. The analyses showed that for winds speeds below 8m/s and with low subdaily signals, the subdaily free drift sea ice motion is strongly connected to the tides and that the frictional dissipation is low. In the context of global tide and storm surge models, the dissipation from free drift sea ice on tides should be evaluated based on the region (deep ocean or shallow water) and existing wind conditions. In the presence of strong winds the dissipation between free drift sea ice and air can be significant on a subdaily scale even if there are no subdaily signals in the wind itself.
    Repository Name: EPIC Alfred Wegener Institut
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  • 11
    Publication Date: 2024-05-08
    Description: Coastal polynyas in Antarctica are a window of air-sea energy exchange and an important source of Antarctic Bottom Water production. However, the relationship between the polynya area variation and the surrounding marine environment is yet to be fully understood. Here we quantify the influence of the volume of transiting consolidated ice on the Terra Nova Bay Polynya area with ice thickness data. Changes in transiting consolidated ice volume are shown to dominate the evolution and variation of the polynya during a typical polynya shrinking event that occurred between 19 June to 03 July, 2013, rather than katabatic winds or air temperature, which are commonly assumed to be the main drivers. Over the cold seasons from 2013 to 2020, the Terra Nova Bay Polynya area is highly correlated to the transiting consolidated ice volume. We demonstrate that thick transiting ice limits the polynya area by blocking the newly-formed sea ice from leaving.
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  • 12
    Publication Date: 2024-05-08
    Description: Atmospheric gaseous elemental mercury (GEM) concentrations in the Arctic exhibit a clear summertime maximum, while the origin of this peak is still a matter of debate in the community. Based on summertime observations during the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition and a modeling approach, we further investigate the sources of atmospheric Hg in the central Arctic. Simulations with a generalized additive model (GAM) show that long-range transport of anthropogenic and terrestrial Hg from lower latitudes is a minor contribution (~2%), and more than 50% of the explained GEM variability is caused by oceanic evasion. A potential source contribution function (PSCF) analysis further shows that oceanic evasion is not significant throughout the ice-covered central Arctic Ocean but mainly occurs in the Marginal Ice Zone (MIZ) due to the specific environmental conditions in that region. Our results suggest that this regional process could be the leading contributor to the observed summertime GEM maximum. In the context of rapid Arctic warming and the observed increase in width of the MIZ, oceanic Hg evasion may become more significant and strengthen the role of the central Arctic Ocean as a summertime source of atmospheric Hg.
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  • 13
    Publication Date: 2024-05-07
    Description: Subsea permafrost carbon pools below the Arctic shelf seas are a major unknown in the global carbon cycle. We combine a numerical model of sedimentation and permafrost evolution with simplified carbon turnover to estimate accumulation and microbial decomposition of organic matter on the pan-Arctic shelf over the past four glacial cycles. We find that Arctic shelf permafrost is a globally important long-term carbon sink storing 2822 (1518–4982) Pg OC, double the amount stored in lowland permafrost. Although currently thawing, prior microbial decomposition and organic matter aging limit decomposition rates to less than 48 Tg OC/yr (25–85) constraining emissions due to thaw and suggesting that the large permafrost shelf carbon pool is largely insensitive to thaw. We identify an urgent need to reduce uncertainty in rates of microbial decomposition of organic matter in cold and saline subaquatic environments. Large emissions of methane more likely derive from older and deeper sources than from organic matter in thawing permafrost.
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  • 14
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    Springer Nature
    In:  EPIC3Nature Communications, Springer Nature, 14(1), pp. 1648-1648, ISSN: 2041-1723
    Publication Date: 2024-05-07
    Description: Alkalinity generation from rock weathering modulates Earth’s climate at geological time scales. Although lithology is thought to dominantly control alkalinity generation globally, the role of other first-order controls appears elusive. Particularly challenging remains the discrimination of climatic and erosional influences. Based on global observations, here we uncover the role of erosion rate in governing riverine alkalinity, accompanied by areal proportion of carbonate, mean annual temperature, catchment area, and soil regolith thickness. We show that the weathering flux to the ocean will be significantly altered by climate warming as early as 2100, by up to 68% depending on the environmental conditions, constituting a sudden feedback of ocean CO2 sequestration to climate. Interestingly, warming under a low-emissions scenario will reduce terrestrial alkalinity flux from mid-latitudes (–1.6 t(bicarbonate) a−1 km−2) until the end of the century, resulting in a reduction in CO2 sequestration, but an increase (+0.5 t(bicarbonate) a−1 km−2) from mid-latitudes is likely under a high-emissions scenario, yielding an additional CO2 sink.
    Repository Name: EPIC Alfred Wegener Institut
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  • 15
    Publication Date: 2024-05-06
    Description: The Multidisciplinary Drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition took place between October 2019 and September 2020 giving the rare opportunity to monitor sea-ice properties over a full annual cycle. Here we present 24 high-resolution orthomosaics and 14 photogrammetric digital elevation models of the sea-ice surface around the icebreaker RV Polarstern between March and September 2020. The dataset is based on 〉34.000 images acquired by a helicopter-borne optical camera system with survey flights covering areas between 1.8 and 96.5 km2 around the vessel. Depending on the flight pattern and altitude of the helicopter, ground resolutions of the orthomosaics range between 0.03 and 0.5 m. By combining the photogrammetric products with contemporaneously acquired airborne laser scanner reflectance measurements selected orthomosaics could be corrected for cloud shadows which facilitates their usage for sea-ice and melt pond classification algorithms. The presented dataset is a valuable data source for the interdisciplinary MOSAiC community building a temporal and spatially resolved baseline to accompany various remote sensing and in situ research projects.
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  • 16
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    Springer Nature
    In:  EPIC3Nature Geoscience, Springer Nature, pp. 1-10, ISSN: 1752-0894
    Publication Date: 2024-05-06
    Description: There has been extensive research into the nonlinear responses of the Earth system to astronomical forcing during the last glacial cycle. However, the speed and spatial geometry of ice sheet expansion to its largest extent at the Last Glacial Maximum 21 thousand years ago remains uncertain. Here we use an Earth system model with interactive ice sheets to show that distinct initial North American (Laurentide) ice sheets at 38 thousand years ago converge towards a configuration consistent with the Last Glacial Maximum due to feedbacks between atmospheric circulation and ice sheet geometry. Notably, ice advance speed and spatial pattern in our model are controlled by the amount of summer snowfall, which is dependent on moisture transport pathways from the North Atlantic warm pool linked to ice sheet geometry. The consequence of increased summer snowfall on the surface mass balance of the ice sheet is not only the direct increase in accumulation but the indirect reduction in melt through the snow/ice–albedo feedback. These feedbacks provide an effective mechanism for ice growth for a range of initial ice sheet states and may explain the rapid North American ice volume increase during the last ice age and potentially driving growth during previous glacial periods.
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  • 17
    Publication Date: 2024-05-03
    Description: The information system PANGAEA provides targeted support for research data management as well as long-term data archiving and publication. PANGAEA is operated as an open access library for archiving, publishing, and distributing georeferenced data from earth and environmental sciences. It focuses on observational and experimental data. Citability, comprehensive metadata descriptions, interoperability of data and metadata, a high degree of structural and semantic harmonization of the data inventory as well as the commitment of the hosting institutions ensures the long-term usability of archived data. PANGAEA is a pioneer of FAIR and open data infrastructures to enable data intensive science and an integral component of national and international science and technology activities. This paper provides an overview of the recent organisational, structural, and technological advancements in developing and operating the information system.
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  • 18
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    Springer Nature
    In:  EPIC3BIOspektrum, Springer Nature, 24(7), pp. 750-751, ISSN: 0947-0867
    Publication Date: 2024-05-03
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  • 19
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    Springer Nature
    In:  EPIC3BIOspektrum, Springer Nature, 25(1), pp. 50-57, ISSN: 0947-0867
    Publication Date: 2024-05-03
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  • 20
    Publication Date: 2024-05-03
    Description: Diversity and its drivers and consequences are at the heart of ecological research. Mostly, studies have focused on different species, but if the causes for increases or decreases in diversity are general, the observed patterns should also be observable within genotypes. As previous research shows that there is higher variability in nitrogen to phosphorus ratios (N/P) between slow-growing unicellular algal populations, compared to fast-growing ones, we expected to observe similar patterns within genetically identical strains growing at different rates. We tested this hypothesis in a laboratory experiment performed with a monoculture of the diatom Phaeodactylum tricornutum. Using a growth rate gradient obtained with 10 chemostats, we were able to determine the effect of growth rate on the diatom’s elemental stoichiometry as well as on selected traits, such as cell size and shape. Our results showed indeed less intercellular variability (in the selected traits assessed on single-cell level) in the faster-growing populations, which was accompanied by a downward trend in bulk N/P ratios. We pose that this higher variability at lower growth rates potentially results in higher variability of the food sources available for higher trophic levels with potential consequences for the transfer efficiency of energy and matter in marine food webs.
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  • 21
    Publication Date: 2024-05-03
    Description: 〈jats:title〉Abstract〈/jats:title〉〈jats:p〉The Digital Earth project aimed for the integration of data science and Earth science. Here, we reflect on the main lessons learned that include the need for interdisciplinary collaboration, thinking out of the box, the concept of ‘thinking in workflows’ and models for the sustainable implementation of scientific software, data infrastructure and policies.〈/jats:p〉
    Repository Name: EPIC Alfred Wegener Institut
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  • 22
    Publication Date: 2024-05-03
    Description: 〈jats:title〉Abstract〈/jats:title〉〈jats:p〉Data-driven science has turned into a fourth fundamental paradigm of performing research. Earth System Science, following a holistic approach in unraveling the complex network of processes and interactions shaping system Earth, particularly profits from embracing data-driven approaches next to observation and modeling. At the end, increasing digitalization of Earth sciences will lead to cultural transformation towards a Digital Earth Culture.〈/jats:p〉
    Repository Name: EPIC Alfred Wegener Institut
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  • 23
    Publication Date: 2024-05-03
    Description: 〈jats:title〉Abstract〈/jats:title〉〈jats:p〉Digital Earth is a project funded by the German Helmholtz Association with all centers of the research field Earth and Environment involved. The main goal of the Digital Earth project is to develop and bundle data science methods in extendable and maintainable scientific workflows that enable natural scientists in collaboration with data scientists to achieve a deeper understanding of the Earth system. This has been achieved by developing solutions for data analysis and exploration with visual and computational approaches with data obtained in a SMART monitoring approach and modeling studies, accompanied by a continuous evaluation of the collaboration processes. In this chapter, the history, setup, and focus of the Digital Earth project are described.〈/jats:p〉
    Repository Name: EPIC Alfred Wegener Institut
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  • 24
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    Springer Nature
    In:  EPIC3Nature, Springer Nature, ISSN: 0028-0836
    Publication Date: 2024-04-29
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  • 25
    Publication Date: 2024-04-29
    Description: We present a dataset of reconstructed three-dimensional (3D) englacial stratigraphic horizons in northern Greenland. The data cover four different regions representing key ice-dynamic settings in Greenland: (i) the onset of Petermann Glacier, (ii) a region upstream of the 79° North Glacier (Nioghalvfjerdsbræ), near the northern Greenland ice divide, (iii) the onset of the Northeast Greenland Ice Stream (NEGIS) and (iv) a 700 km wide region extending across the central ice divide over the entire northern part of central Greenland. In this paper, we promote the advantages of a 3D perspective of deformed englacial stratigraphy and explain how 3D horizons provide an improved basis for interpreting and reconstructing the ice-dynamic history. The 3D horizons are provided in various formats to allow a wide range of applications and reproducibility of results.
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  • 26
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    Springer Nature
    In:  EPIC3Nature, Springer Nature, 613(7944), pp. 503-507, ISSN: 0028-0836
    Publication Date: 2024-04-29
    Description: The Greenland Ice Sheet has a central role in the global climate system owing to its size, radiative effects and freshwater storage, and as a potential tipping point1. Weather stations show that the coastal regions are warming2, but the imprint of global warming in the central part of the ice sheet is unclear, owing to missing long-term observations. Current ice-core-based temperature reconstructions3–5 are ambiguous with respect to isolating global warming signatures from natural variability, because they are too noisy and do not include the most recent decades. By systematically redrilling ice cores, we created a high-quality reconstruction of central and north Greenland temperatures from ad 1000 until 2011. Here we show that the warming in the recent reconstructed decade exceeds the range of the pre-industrial temperature variability in the past millennium with virtual certainty (P < 0.001) and is on average 1.5 ± 0.4 degrees Celsius (1 standard error) warmer than the twentieth century. Our findings suggest that these exceptional temperatures arise from the superposition of natural variability with a long-term warming trend, apparent since ad 1800. The disproportionate warming is accompanied by enhanced Greenland meltwater run-off, implying that anthropogenic influence has also arrived in central and north Greenland, which might further accelerate the overall Greenland mass loss.
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  • 27
    Publication Date: 2024-04-29
    Description: The Last Interglacial (~129,000–116,000 years ago) is the most recent geologic period with a warmer-than-present climate. Proxy-based temperature reconstructions from this interval can help contextualize natural climate variability in our currently warming world, especially if they can define changes on decadal timescales. Here, we established a ~4.800-year-long record of sea surface temperature (SST) variability from the eastern Mediterranean Sea at 1–4-year resolution by applying mass spectrometry imaging of long-chain alkenones to a finely laminated organic-matter-rich sapropel deposited during the Last Interglacial. We observe the highest amplitude of decadal variability in the early stage of sapropel deposition, plausibly due to reduced vertical mixing of the highly stratified water column. With the subsequent reorganization of oceanographic conditions in the later stage of sapropel deposition, when SST forcing resembled the modern situation, we observe that the maximum amplitude of reconstructed decadal variability did not exceed the range of the recent period of warming climate. The more gradual, centennial SST trends reveal that the maximal centennial scale SST increase in our Last Interglacial record is below the projected temperature warming in the twenty-first century.
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  • 28
    Publication Date: 2024-04-24
    Description: Mesopelagic fish (meso-fish) are central species within the Southern Ocean (SO). However, their ecosystem role and adaptive capacity to climate change are rarely integrated into marine protected area (MPAs) assessments. This is a pity given their importance as crucial prey and predators in food webs, coupled with the impacts of climate change. Here, we estimate the habitat distribution of nine meso-fish using an ensemble model approach (MAXENT, random forest, and boosted regression tree). Four climate model simulations were used to project their distribution under two representative concentration pathways (RCP4.5 and RCP8.5) for short-term (2006–2055) and long-term (2050–2099) periods. In addition, we assess the ecological representativeness of established and proposed MPAs under climate change scenarios using meso-fish as indicator species. Our models show that all species shift poleward in the future. Lanternfishes (family Myctophidae) are predicted to migrate poleward more than other families (Paralepididae, Nototheniidae, Bathylagidae, and Gonostomatidae). In comparison, lanternfishes were projected to increase habitat area in the eastern SO but lose area in the western SO; the opposite was projected for species in other families. Important areas (IAs) of meso-fish are mainly distributed near the Antarctic Peninsula and East Antarctica. Proposed MPAs cover 23% of IAs at present and 38% of IAs in the future (RCP8.5, long-term future). Many IAs of meso-fish still need to be included in MPA proposals, such as the Prydz Bay and the seas around the Antarctic Peninsula. Our results provide a framework for designing new MPAs incorporating climate change adaptation strategies for MPA management.
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  • 29
    Publication Date: 2024-04-23
    Description: Background: Extreme terrestrial, analogue environments are widely used models to study the limits of life and to infer habitability of extraterrestrial settings. In contrast to Earth’s ecosystems, potential extraterrestrial biotopes are usually characterized by a lack of oxygen. Methods: In the MASE project (Mars Analogues for Space Exploration), we selected representative anoxic analogue environments (permafrost, salt-mine, acidic lake and river, sulfur springs) for the comprehensive analysis of their microbial communities. We assessed the microbiome profile of intact cells by propidium monoazide-based amplicon and shotgun metagenome sequencing, supplemented with an extensive cultivation effort. Results: The information retrieved from microbiome analyses on the intact microbial community thriving in the MASE sites, together with the isolation of 31 model microorganisms and successful binning of 15 high-quality genomes allowed us to observe principle pathways, which pinpoint specific microbial functions in the MASE sites compared to moderate environments. The microorganisms were characterized by an impressive machinery to withstand physical and chemical pressures. All levels of our analyses revealed the strong and omnipresent dependency of the microbial communities on complex organic matter. Moreover, we identified an extremotolerant cosmopolitan group of 34 poly-extremophiles thriving in all sites. Conclusions: Our results reveal the presence of a core microbiome and microbial taxonomic similarities between saline and acidic anoxic environments. Our work further emphasizes the importance of the environmental, terrestrial parameters for the functionality of a microbial community, but also reveals a high proportion of living microorganisms in extreme environments with a high adaptation potential within habitability borders.
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  • 30
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    Springer Nature
    In:  EPIC3Scientific Reports, Springer Nature, 13(1), pp. 21921-21921, ISSN: 2045-2322
    Publication Date: 2024-04-22
    Description: The extreme 2018 and 2022 droughts pose as recent examples of a series of drought events that have hit Europe over the last decades with wide ranging social, environmental and economic impacts. Although the link between atmospheric circulation and meteorological drought is clear and often highlighted during major drought events, there is a lack of in-depth studies linking historical changes in meteorological drought indices and prevailing large-scale atmospheric patterns in Europe. To meet this shortfall, we investigated the relation between changes in large-scale atmospheric patterns and meteorological drought, as indicated by the geopotential height at 500mb (Z500) and the Standardised Precipitation-Evapotranspiration Index (SPEI), respectively. Calculations were done separately for four climate regions (North, West, Central-East and Mediterranean) over the growing season (March–September). Coherent patterns of significant changes towards higher pressure (increasing Z500) and drier conditions (decreasing SPEI) over 1979–2021 are found over West in spring and Central-East in summer. Z500 and SPEI are strongly linked, reflected by both significant (1979–2021) correlations and high co-occurrences (69-96%) between meteorological drought and high-pressure anomaly occurrences since 1900. North shows the most heterogeneous trend patterns and weakest links, but constitutes a hotspot of significantly increasing Z500 in September. Finally, we performed an ensemble-based, European wide analysis of future Z500, based on CMIP6 low-end (SSP126) and high-end (SSP585) 21st century emission scenarios. According to the projected changes, anomalously high-pressure systems will be the new normal regardless of scenario, and well exceeding the 2018 and 2022 levels in the case of the high-end emission scenario. However, due to the limitations of the model ensemble to represent the spatial heterogeneity in historical Z500 variability and trends (1979–2014), projected changes in large-scale circulation, and associated meteorological droughts, are highly uncertain. This paper provides new insight into significant trends in atmospheric circulation over Europe, their strong links to the observed drying trends, and the inability of a CMIP6 ensemble to reproduce the spatial heterogeneity of the circulation changes.
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  • 31
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    In:  EPIC3Scientific Reports, Springer Nature, 13(1), pp. 18100-18100, ISSN: 2045-2322
    Publication Date: 2024-04-22
    Description: Climate indices are often used as a climate monitoring tool, allowing us to understand how the frequency, intensity, and duration of extreme weather events are changing over time. Here, based on complex statistical analysis we identify highly correlated significant pairs of compound events at the highest spatial resolution, on a monthly temporal scale across Europe. Continental-scale monthly analysis unleashes information on compound events such as high-risk zones, hotspots, monthly shifts of hotspots and trends, risk exposure to land cover and population, and identification of maximum increasing trends. While there are many studies on single or compound climate extremes there are only a few studies that addresses the relationship between pairs of hazards, the incorporation of bioclimatic indices, the determination of a grid best-fit copula approach, and the outlining relevance of this work of compound event risks with exposures. In this respect, here, using 27-bivariate and 10-trivariate copula models, we show that the different hazard pairs have high combined risks of indices related to radiation, temperature, evapotranspiration, bioclimatic-based indices, such as the universal thermal climate index, wind chill index, and heat index, mainly over the northern and eastern European countries. Furthermore, we show that over the last 7 decades, agricultural and coastal areas are highly exposed to the risks of defined hotspots of compound events. In some of the hotspots of compound events-identified by clusters, there is no monthly shifts of hotspots, leading to higher impacts when compounded. Future work needs to integrate the framework and process to identify other compound pairs.
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  • 32
    Publication Date: 2024-04-22
    Description: Exceptional drought events, known as megadroughts, have occurred on every continent outside Antarctica over the past ~2,000 years, causing major ecological and societal disturbances. In this Review, we discuss shared causes and features of Common Era (Year 1–present) and future megadroughts. Decadal variations in sea surface temperatures are the primary driver of megadroughts, with secondary contributions from radiative forcing and land–atmosphere interactions. Anthropogenic climate change has intensified ongoing megadroughts in south-western North America and across Chile and Argentina. Future megadroughts will be substantially warmer than past events, with this warming driving projected increases in megadrought risk and severity across many regions, including western North America, Central America, Europe and the Mediterranean, extratropical South America, and Australia. However, several knowledge gaps currently undermine confidence in understanding past and future megadroughts. These gaps include a paucity of high-resolution palaeoclimate information over Africa, tropical South America and other regions; incomplete representations of internal variability and land surface processes in climate models; and the undetermined capacity of water-resource management systems to mitigate megadrought impacts. Addressing these deficiencies will be crucial for increasing confidence in projections of future megadrought risk and for resiliency planning.
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  • 33
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    In:  EPIC3Communications Earth & Environment, Springer Nature, 3(1), pp. 277-277, ISSN: 2662-4435
    Publication Date: 2024-04-22
    Description: Numerical simulations indicate that extreme climate events (e.g., droughts, floods, heat waves) will increase in a warming world, putting enormous pressure on society and political decision-makers. To provide a long-term perspective on the variability of these extreme events, here we use a ~700 years tree-ring oxygen isotope chronology from Eastern Europe, in combination with paleo-reanalysis data, to show that the summer drying over Eastern Europe observed over the last ~150 years is to the best of our knowledge unprecedented over the last 700 years. This drying is driven by a change in the pressure patterns over Europe, characterized by a shift from zonal to a wavier flow around 1850CE, leading to extreme summer droughts and aridification. To our knowledge, this is the first and longest reconstruction of drought variability, based on stable oxygen isotopes in the tree-ring cellulose, for Eastern Europe, helping to fill a gap in the spatial coverage of paleoclimate reconstructions.
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  • 34
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    In:  EPIC3Communications Earth & Environment, Springer Nature, 4(1), pp. 324-324, ISSN: 2662-4435
    Publication Date: 2024-04-22
    Description: The warm Atlantic Water transported into the Barents Sea plays a crucial role in winter sea ice extent, marine ecosystems, and mid-latitude weather. The North Atlantic Oscillation is known to be an important driver for the Atlantic Water transport variability in the Barents Sea Opening. Here, we find that the dependence of the Barents Sea Opening ocean volume transport variability on the North Atlantic Oscillation is non-stationary. Our results indicate that for the period 1995 to 2005, the link between the North Atlantic Oscillation and the transport variability in the Barents Sea Opening temporarily weakened before an eventual recovery. During this period, synoptic cyclones with unusual trajectories as a consequence of pronounced atmospheric blocking in the North Atlantic sector altered the large-scale and local wind patterns. This temporarily caused a state that the Barents Sea Opening transport variability is largely locally driven instead of being driven by the North Atlantic Oscillation. Our study suggests that an adequate representation of both the North Atlantic Oscillation and cyclone activity is necessary for climate models to better predict future changes in poleward ocean heat transport and Arctic climate.
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  • 35
    Publication Date: 2024-04-22
    Description: The richness and structure of symbiont assemblages are shaped by many factors acting at different spatial and temporal scales. Among them, host phylogeny and geographic distance play essential roles. To explore drivers of richness and structure of symbiont assemblages, feather mites and seabirds are an attractive model due to their peculiar traits. Feather mites are permanent ectosymbionts and considered highly host-specific with limited dispersal abilities. Seabirds harbour species-rich feather mite communities and their colonial breeding provides opportunities for symbionts to exploit several host species. To unravel the richness and test the influence of host phylogeny and geographic distance on mite communities, we collected feather mites from 11 seabird species breeding across the Atlantic Ocean and Mediterranean Sea. Using morphological criteria, we identified 33 mite species, of which 17 were new or recently described species. Based on community similarity analyses, mite communities were clearly structured by host genera, while the effect of geography within host genera or species was weak and sometimes negligible. We found a weak but significant effect of geographic distance on similarity patterns in mite communities for Cory’s shearwaters Calonectris borealis. Feather mite specificity mainly occurred at the host-genus rather than at host-species level, suggesting that previously inferred host species-specificity may have resulted from poorly sampling closely related host species. Overall, our results show that host phylogeny plays a greater role than geography in determining the composition and structure of mite assemblages and pinpoints the importance of sampling mites from closely-related host species before describing mite specificity patterns.
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  • 36
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    Springer Nature
    In:  EPIC3Nature Communications, Springer Nature, 15(1), pp. 3012-3012, ISSN: 2041-1723
    Publication Date: 2024-04-19
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  • 37
    Publication Date: 2024-04-17
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  • 38
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    In:  EPIC3Analytical and Bioanalytical Chemistry, Springer Nature, 415(15), pp. 2869-2871, ISSN: 1618-2642
    Publication Date: 2024-04-17
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  • 39
    Publication Date: 2024-04-17
    Description: Plastics are persistent in the environment and may be ingested by organisms where they may cause physical harm or release plastic additives. Monitoring is a crucial mechanism to assess the risk of plastics to the marine and terrestrial ecosystem. Unfortunately, due to unharmonised procedures, it remains difficult to compare the results of different studies. This publication, as part of the Horizon project EUROqCHARM, aims to identify the properties of the available analytical processes and methods for the determination of plastics in biota. Based on a systematic review, reproducible analytical pipelines were examined and the technological readiness levels were assessed so that these methods may eventually (if not already) be incorporated into (harmonised) monitoring programs where biota are identified as indicators of plastic pollution.
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  • 40
    Publication Date: 2024-04-16
    Description: An author of the paper was omitted in the original version (Ted Conroy, University of Waikato, New Zealand). This has been corrected in the pdf and HTML versions of the paper, and the associated metadata.
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  • 41
    Publication Date: 2024-04-15
    Description: We studied the potential of a recently introduced species, the Asian brush-clawed crab (Hemigrapsus takanoi), to expand its distribution range further into the Baltic Sea. H. takanoi has been documented in the southwestern Baltic Sea since 2014. The ability to persist and further expand into the Baltic Proper will depend on their potential to sustain all stages of their complex life cycle, including pelagic larvae, under the Baltic Sea's conditions. Range limits may be established by the tolerance to low salinity, which in addition may be affected by water temperature. A key question is whether local populations at the distribution limit (within the Baltic Sea) show increased tolerance to low salinities and hence promote further expansion. We quantified the combined effects of salinity (10–33 PSU) and temperature (15–24 °C) on larval development in four populations of H. takanoi (two from the Baltic and two from the North Sea). We found substantial differences in larval performance between the populations from the Baltic and North Seas. Larvae from the North Sea populations always showed higher survival and faster development compared with those from the Baltic Sea. Only weak evidence of elevated tolerance towards low salinity was found in the larvae from the Baltic Sea populations. In addition, larvae from the population located near the range limit showed very low survival under all tested salinity-temperature combinations and no evidence of increased tolerance to low salinity. There was no apparent genetic differentiation among the studied populations in the mitochondrial cytochrome c oxidase subunit one gene (COI) implying high connectivity among the populations. In conclusion, the weak evidence of low salinity tolerance in Baltic Sea populations, and poor larval performance for the population located near the range limit, coupled with limited genetic differentiation suggest that subsidies are needed for populations to persist near the range limit. Alternatively, ontogenetic migrations would be required to sustain those populations. Monitoring efforts are needed to elucidate the underlaying mechanisms and document potential future range expansions.
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  • 42
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    In:  EPIC3Springer Nature, pp. 349-381, ISBN: 9783030425821
    Publication Date: 2024-04-13
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  • 43
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    In:  EPIC3Journal of Bionic Engineering, Springer Nature, 20(5), pp. 1996-2017, ISSN: 1672-6529
    Publication Date: 2024-04-11
    Description: Lightweight structures are widely used across different industry sectors. However, they get easily excited by external influences, such as vibrations. Undesired high vibration amplitudes can be avoided by shifting the structural eigenfrequencies, which can be achieved adapting the structural design considering optimisation procedures and structures primarily inspired by diatoms. This procedures has been applied to the development process of a girder structure installed in a synchrotron radiation facility to support heavy magnets and other components. The objective was to design a 2.9 m long girder structure with high eigenfrequencies, a high stiffness and a low mass. Based on a topology optimisation result, a parametric beam–shell model including biologically inspired structures (e.g., Voronoi combs, ribs, and soft and organic-looking transitions) was built up. The subsequent cross-sectional optimisation using evolutionary strategic optimisation revealed an optimum girder structure, which was successfully manufactured using the casting technology. Eigenfrequency measurements validated the numerical models. Future changes in the specifications can be implemented in the bio-inspired development process to obtain adapted girder structures.
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  • 44
    Publication Date: 2024-04-11
    Description: Arctic river deltas are highly dynamic environments in the northern circumpolar permafrost region that are affected by fluvial, coastal, and permafrost-thaw processes. They are characterized by thick sediment deposits containing large but poorly constrained amounts of frozen organic carbon and nitrogen. This study presents new data on soil organic carbon and nitrogen storage as well as accumulation rates from the Ikpikpuk and Fish Creek river deltas, two small, permafrost-dominated Arctic river deltas on the Arctic Coastal Plain of northern Alaska. A soil organic carbon storage of 42.4 ± 1.6 and 37.9 ± 3.5 kg C m− 2 and soil nitrogen storage of 2.1 ± 0.1 and 2.0 ± 0.2 kg N m− 2 was found for the first 2 m of soil for the Ikpikpuk and Fish Creek river delta, respectively. While the upper meter of soil contains 3.57 Tg C, substantial amounts of carbon (3.09 Tg C or 46%) are also stored within the second meter of soil (100–200 cm) in the two deltas. An increasing and inhomogeneous distribution of C with depth is indicative of the dominance of deltaic depositional rather than soil forming processes for soil organic carbon storage. Largely, mid- to late Holocene radiocarbon dates in our cores suggest different carbon accumulation rates for the two deltas for the last 2000 years. Rates up to 28 g C m− 2 year− 1 for the Ikpikpuk river delta are about twice as high as for the Fish Creek river delta. With this study, we highlight the importance of including these highly dynamic permafrost environments in future permafrost carbon estimations.
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  • 45
    Publication Date: 2024-04-11
    Description: This dataset reports measurements from a laboratory incubation of soils sourced from a boreal peatland and surrounding habitats (Siikaneva Bog, Finland). In August 2021, soil cores were collected from three habitat zones: a well-drained upland forest, an intermediate margin ecotone, and a Sphagnum moss bog. The cores from each habitat were taken from surface to approximately 50cm below surface using an Eijelkamp peat corer and subdivided by soil horizon. The samples were then incubated anaerobically for 140 days in three temperature treatment groups (0, 4, 20°C). Subsamples of the incubations headspace (250 µL) were measured on a gas chromatograph (7890A, Agilent Technologies, USA) with flame ionization detection (FID) for CO2 and CH4 concentrations. The rate of respiration from the samples were calculated per gram carbon and per gram soil as described in the method of Robertson., et al. (1999) and reported here, along with other relevant parameters.
    Language: English
    Type: info:eu-repo/semantics/workingPaper
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  • 46
    Publication Date: 2024-04-10
    Description: Sedimentary DNA-based studies revealed the effects of human activity on lake cyanobacteria communities over the last centuries, yet we continue to lack information over longer timescales. Here, we apply high-resolution molecular analyses on sedimentary ancient DNA to reconstruct the history of cyanobacteria throughout the Holocene in a lake in north-eastern Germany. We find a substantial increase in cyanobacteria abundance coinciding with deforestation during the early Bronze Age around 4000 years ago, suggesting increased nutrient supply to the lake by local communities settling on the lakeshore. The next substantial human-driven increase in cyanobacteria abundance occurred only about a century ago due to intensified agricultural fertilisation which caused the dominance of potentially toxic taxa (e.g., Aphanizomenon). Our study provides evidence that humans began to locally impact lake ecology much earlier than previously assumed. Consequently, managing aquatic systems today requires awareness of the legacy of human influence dating back potentially several millennia.
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  • 47
    Publication Date: 2024-04-10
    Description: The development of algorithms for remote sensing of water quality (RSWQ) requires a large amount of in situ data to account for the bio-geo-optical diversity of inland and coastal waters. The GLObal Reflectance community dataset for Imaging and optical sensing of Aquatic environments (GLORIA) includes 7,572 curated hyperspectral remote sensing reflectance measurements at 1 nm intervals within the 350 to 900 nm wavelength range. In addition, at least one co-located water quality measurement of chlorophyll a, total suspended solids, absorption by dissolved substances, and Secchi depth, is provided. The data were contributed by researchers affiliated with 59 institutions worldwide and come from 450 different water bodies, making GLORIA the de-facto state of knowledge of in situ coastal and inland aquatic optical diversity. Each measurement is documented with comprehensive methodological details, allowing users to evaluate fitness-for-purpose, and providing a reference for practitioners planning similar measurements. We provide open and free access to this dataset with the goal of enabling scientific and technological advancement towards operational regional and global RSWQ monitoring.
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  • 48
    Publication Date: 2024-04-10
    Description: Sea ice is a key factor for the functioning and services provided by polar marine ecosystems. However, ecosystem responses to sea-ice loss are largely unknown because time-series data are lacking. Here, we use shotgun metagenomics of marine sedimentary ancient DNA off Kamchatka (Western Bering Sea) covering the last ~20,000 years. We traced shifts from a sea ice-adapted late-glacial ecosystem, characterized by diatoms, copepods, and codfish to an ice-free Holocene characterized by cyanobacteria, salmon, and herring. By providing information about marine ecosystem dynamics across a broad taxonomic spectrum, our data show that ancient DNA will be an important new tool in identifying long-term ecosystem responses to climate transitions for improvements of ocean and cryosphere risk assessments. We conclude that continuing sea-ice decline on the northern Bering Sea shelf might impact on carbon export and disrupt benthic food supply and could allow for a northward expansion of salmon and Pacific herring.
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  • 49
    Publication Date: 2024-04-09
    Description: Over the past 40 years, the significance of microzooplankton grazing in oceanic carbon cycling has been highlighted with the help of dilution experiments. The ecologically relevant Western Antarctic Peninsula (WAP) ecosystem in the Southern Ocean (SO), however, has not been well studied. Here we present data from dilution experiments, performed at three stations around the northern tip of the WAP to determine grazing rates of small zooplankton (hetero- and mixotrophic members of the 0.2–200 µm size fraction, SZP) on auto- and heterotrophic members of the 〈 200 µm plankton community as well as their gross growth. While variable impacts of SZP grazing on carbon cycling were measured, particulate organic carbon, not the traditionally used parameter chlorophyll a, provided the best interpretable results. Our results suggested that heterotrophic picoplankton played a significant role in the carbon turnover at all stations. Finally, a comparison of two stations with diverging characteristics highlights that SZP grazing eliminated 56–119% of gross particulate organic carbon production from the particulate fraction. Thus, SZP grazing eliminated 20–50 times more carbon from the particulate fraction compared to what was exported to depth, therefore significantly affecting the efficiency of the biological carbon pump at these SO sites.
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  • 50
    Publication Date: 2024-04-09
    Description: “Red tides” are harmful algal blooms caused by dinoflagellate microalgae that accumulate toxins lethal to other organisms, including humans via consumption of contaminated seafood. These algal blooms are driven by a combination of environmental factors including nutrient enrichment, particularly in warm waters, and are increasingly frequent. The molecular, regulatory, and evolutionary mechanisms that underlie the heat stress response in these harmful bloom-forming algal species remain little understood, due in part to the limited genomic resources from dinoflagellates, complicated by the large sizes of genomes, exhibiting features atypical of eukaryotes.
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  • 51
    Publication Date: 2024-04-08
    Description: Understanding the genetic structure of populations and the processes responsible for its spatial and temporal dynamics is vital for assessing species’ adaptability and survival in changing environments. We investigate the genetic fingerprinting of blooming populations of the marine diatom Pseudo-nitzschia multistriata in the Gulf of Naples (Mediterranean Sea) from 2008 to 2020. Strains were genotyped using microsatellite fingerprinting and natural samples were also analysed with Microsatellite Pool-seq Barcoding based on Illumina sequencing of microsatellite loci. Both approaches revealed a clonal expansion event in 2013 and a more stable genetic structure during 2017–2020 compared to previous years. The identification of a mating type (MT) determination gene allowed to assign MT to strains isolated over the years. MTs were generally at equilibrium with two notable exceptions, including the clonal bloom of 2013. The populations exhibited linkage equilibrium in most blooms, indicating that sexual reproduction leads to genetic homogenization. Our findings show that P. multistriata blooms exhibit a dynamic genetic and demographic composition over time, most probably determined by deeper-layer cell inocula. Occasional clonal expansions and MT imbalances can potentially affect the persistence and ecological success of planktonic diatoms.
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  • 52
    Publication Date: 2024-04-08
    Description: Climate change is opening the Arctic Ocean to increasing human impact and ecosystem changes. Arctic fjords, the region’s most productive ecosystems, are sustained by a diverse microbial community at the base of the food web. Here we show that Arctic fjords become more prokaryotic in the picoplankton (0.2–3 µm) with increasing water temperatures. Across 21 fjords, we found that Arctic fjords had proportionally more trophically diverse (autotrophic, mixotrophic, and heterotrophic) picoeukaryotes, while subarctic and temperate fjords had relatively more diverse prokaryotic trophic groups. Modeled oceanographic connectivity between fjords suggested that transport alone would create a smooth gradient in beta diversity largely following the North Atlantic Current and East Greenland Current. Deviations from this suggested that picoeukaryotes had some strong regional patterns in beta diversity that reduced the effect of oceanographic connectivity, while prokaryotes were mainly stopped in their dispersal if strong temperature differences between sites were present. Fjords located in high Arctic regions also generally had very low prokaryotic alpha diversity. Ultimately, warming of Arctic fjords could induce a fundamental shift from more trophic diverse eukaryotic- to prokaryotic-dominated communities, with profound implications for Arctic ecosystem dynamics including their productivity patterns.
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  • 53
    Publication Date: 2024-04-08
    Description: The Northeast Greenland shelf (NEGS) is a recipient of Polar Water (PW) from the Arctic Ocean, Greenland Ice Sheet melt, and Atlantic Water (AW). Here, we compile hydrographical measurements to quantify long-term changes in fjords and coastal waters. We find a profound change in the vertical distribution of water masses, with AW shoaling 〉60 m and PW thinning 〉50 m since early 2000’s. The properties of these waters have also changed. AW is now 1 °C warmer and the salinity of surface waters and PW are 1.8 and 0.68 lower, respectively. The AW changes have substantially weakened stratification south of ~74°N, indicating increased accessibility of heat and potentially nutrients associated with AW. The Atlantification earlier reported for the eastern Fram Strait and Barents Sea region has also propagated to the NEGS. The increased presence of AW, is an important driver for regional change leading to a likely shift in ecosystem structure and function.
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  • 54
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    In:  EPIC3Communications Earth & Environment, Springer Nature, 5(1), pp. 93-93, ISSN: 2662-4435
    Publication Date: 2024-04-03
    Description: Recently, seasonal pulses of modified Warm Deep Water have been observed near the Filchner Ice Shelf front in the Weddell Sea, Antarctica. Here, we investigate the temperature evolution of subsurface waters in the Filchner Trough under four future scenarios of carbon dioxide emissions using the climate model AWI-CM. Our model simulates these warm intrusions, suggests more frequent pulses in a warmer climate, and supports the potential for a regime shift from cold to warm Filchner Trough in two high-emission scenarios. The regime shift is governed in particular by decreasing local sea ice formation and a shoaling thermocline. Cavity circulation is not critical in triggering the change. Consequences would include increased ice shelf basal melting, reduced buttressing of fast-flowing ice streams, loss of grounded ice and an acceleration of global sea level rise. According to our simulations, the regime shift can be avoided and the Filchner Trough warming can be restricted to 0.5 ∘C by reaching the 2 ∘C climate goal.
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  • 56
    Publication Date: 2024-04-03
    Description: Background: Changes in microbial community composition as a function of human health and disease states have sparked remarkable interest in the human gut microbiome. However, establishing reproducible insights into the determinants of microbial succession in disease has been a formidable challenge. Results: Here we use fecal microbiota transplantation (FMT) as an in natura experimental model to investigate the association between metabolic independence and resilience in stressed gut environments. Our genome-resolved metagenomics survey suggests that FMT serves as an environmental filter that favors populations with higher metabolic independence, the genomes of which encode complete metabolic modules to synthesize critical metabolites, including amino acids, nucleotides, and vitamins. Interestingly, we observe higher completion of the same biosynthetic pathways in microbes enriched in IBD patients. Conclusions: These observations suggest a general mechanism that underlies changes in diversity in perturbed gut environments and reveal taxon-independent markers of “dysbiosis” that may explain why widespread yet typically low-abundance members of healthy gut microbiomes can dominate under inflammatory conditions without any causal association with disease.
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  • 57
    Publication Date: 2024-04-03
    Description: One-quarter of photosynthesis-derived carbon on Earth rapidly cycles through a set of short-lived seawater metabolites that are generated from the activities of marine phytoplankton, bacteria, grazers and viruses. Here we discuss the sources of microbial metabolites in the surface ocean, their roles in ecology and biogeochemistry, and approaches that can be used to analyse them from chemistry, biology, modelling and data science. Although microbial-derived metabolites account for only a minor fraction of the total reservoir of marine dissolved organic carbon, their flux and fate underpins the central role of the ocean in sustaining life on Earth.
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  • 58
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    In:  EPIC3Nature Microbiology, Springer Nature, 9(3), pp. 830-847, ISSN: 2058-5276
    Publication Date: 2024-04-03
    Description: Plasmids alter microbial evolution and lifestyles by mobilizing genes that often confer fitness in changing environments across clades. Yet our ecological and evolutionary understanding of naturally occurring plasmids is far from complete. Here we developed a machine-learning model, PlasX, which identified 68,350 non-redundant plasmids across human gut metagenomes and organized them into 1,169 evolutionarily cohesive ‘plasmid systems’ using our sequence containment-aware network-partitioning algorithm, MobMess. Individual plasmids were often country specific, yet most plasmid systems spanned across geographically distinct human populations. Cargo genes in plasmid systems included well-known determinants of fitness, such as antibiotic resistance, but also many others including enzymes involved in the biosynthesis of essential nutrients and modification of transfer RNAs, revealing a wide repertoire of likely fitness determinants in complex environments. Our study introduces computational tools to recognize and organize plasmids, and uncovers the ecological and evolutionary patterns of diverse plasmids in naturally occurring habitats through plasmid systems.
    Repository Name: EPIC Alfred Wegener Institut
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  • 59
    Publication Date: 2024-04-03
    Description: Respiratory reductases enable microorganisms to use molecules present in anaerobic ecosystems as energy-generating respiratory electron acceptors. Here we identify three taxonomically distinct families of human gut bacteria (Burkholderiaceae, Eggerthellaceae and Erysipelotrichaceae) that encode large arsenals of tens to hundreds of respiratory-like reductases per genome. Screening species from each family (Sutterella wadsworthensis, Eggerthella lenta and Holdemania filiformis), we discover 22 metabolites used as respiratory electron acceptors in a species-specific manner. Identified reactions transform multiple classes of dietary- and host-derived metabolites, including bioactive molecules resveratrol and itaconate. Products of identified respiratory metabolisms highlight poorly characterized compounds, such as the itaconate-derived 2-methylsuccinate. Reductase substrate profiling defines enzyme–substrate pairs and reveals a complex picture of reductase evolution, providing evidence that reductases with specificities for related cinnamate substrates independently emerged at least four times. These studies thus establish an exceptionally versatile form of anaerobic respiration that directly links microbial energy metabolism to the gut metabolome.
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  • 60
    Publication Date: 2024-04-03
    Description: Host–microbe interactions have been linked to health and disease states through the use of microbial taxonomic profiling, mostly via 16S ribosomal RNA gene sequencing. However, many mechanistic insights remain elusive, in part because studying the genomes of microbes associated with mammalian tissue is difficult due to the high ratio of host to microbial DNA in such samples. Here we describe a microbial-enrichment method (MEM), which we demonstrate on a wide range of sample types, including saliva, stool, intestinal scrapings, and intestinal mucosal biopsies. MEM enabled high-throughput characterization of microbial metagenomes from human intestinal biopsies by reducing host DNA more than 1,000-fold with minimal microbial community changes (roughly 90% of taxa had no significant differences between MEM-treated and untreated control groups). Shotgun sequencing of MEM-treated human intestinal biopsies enabled characterization of both high- and low-abundance microbial taxa, pathways and genes longitudinally along the gastrointestinal tract. We report the construction of metagenome-assembled genomes directly from human intestinal biopsies for bacteria and archaea at relative abundances as low as 1%. Analysis of metagenome-assembled genomes reveals distinct subpopulation structures between the small and large intestine for some taxa. MEM opens a path for the microbiome field to acquire deeper insights into host–microbe interactions by enabling in-depth characterization of host-tissue-associated microbial communities.
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  • 61
    Publication Date: 2024-03-28
    Description: The Arctic Ocean is experiencing unprecedented changes because of climate warming, necessitating detailed analyses on the ecology and dynamics of biological communities to understand current and future ecosystem shifts. Here, we generated a four-year, high-resolution amplicon dataset along with one annual cycle of PacBio HiFi read metagenomes from the East Greenland Current (EGC), and combined this with datasets spanning different spatiotemporal scales (Tara Arctic and MOSAiC) to assess the impact of Atlantic water influx and sea-ice cover on bacterial communities in the Arctic Ocean. Densely ice-covered polar waters harboured a temporally stable, resident microbiome. Atlantic water influx and reduced sea-ice cover resulted in the dominance of seasonally fluctuating populations, resembling a process of “replacement” through advection, mixing and environmental sorting. We identified bacterial signature populations of distinct environmental regimes, including polar night and high-ice cover, and assessed their ecological roles. Dynamics of signature populations were consistent across the wider Arctic; e.g. those associated with dense ice cover and winter in the EGC were abundant in the central Arctic Ocean in winter. Population- and community-level analyses revealed metabolic distinctions between bacteria affiliated with Arctic and Atlantic conditions; the former with increased potential to use bacterial- and terrestrial-derived substrates or inorganic compounds. Our evidence on bacterial dynamics over spatiotemporal scales provides novel insights into Arctic ecology and indicates a progressing Biological Atlantification of the warming Arctic Ocean, with consequences for food webs and biogeochemical cycles.
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  • 62
    Publication Date: 2024-03-27
    Description: Interest in deep-sea mining for polymetallic nodules as an alternative source to onshore mines for various high-technology metals has risen in recent years, as demands and costs have increased. The need for studies to assess its short- and long-term consequences on polymetallic nodule ecosystems is therefore also increasingly prescient. Recent image-based expedition studies have described the temporal impacts on epi-/megafauna seafloor communities across these ecosystems at particular points in time. However, these studies have failed to capture information on large infauna within the sediments or give information on potential transient and temporally limited users of these areas, such as mobile surface deposit feeders or fauna responding to bloom events or food fall depositions. This study uses data from the Peru Basin polymetallic nodule province, where the seafloor was previously disturbed with a plough harrow in 1989 and with an epibenthic sled (EBS) in 2015, to simulate two contrasting possible impact forms of mining disturbance. To try and address the shortfall on information on transient epifauna and infauna use of these various disturbed and undisturbed areas of nodule-rich seafloor, images collected 6 months after the 2015 disturbance event were inspected and all Lebensspuren, ‘traces of life’, were characterized by type (epi- or infauna tracemakers, as well as forming fauna species where possible), along with whether they occurred on undisturbed seafloor or regions disturbed in 1989 or 2015. The results show that epi- and endobenthic Lebensspuren were at least 50% less abundant across both the ploughed and EBS disturbed seafloors. This indicates that even 26 years after disturbance, sediment use by fauna may remain depressed across these areas.
    Repository Name: EPIC Alfred Wegener Institut
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  • 63
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    Springer Nature
    In:  EPIC3International Journal of Biometeorology, Springer Nature, 68(4), pp. 1-17, ISSN: 0020-7128
    Publication Date: 2024-03-26
    Description: The Great Lakes region of North America has warmed by 1–2 °C on average since pre-industrial times, with the most pronounced changes observable during winter and spring. Interannual variability in temperatures remains high, however, due to the influence of ocean-atmosphere circulation patterns that modulate the warming trend across years. Variations in spring temperatures determine growing season length and plant phenology, with implications for whole ecosystem function. Studying how both internal climate variability and the “secular” warming trend interact to produce trends in temperature is necessary to estimate potential ecological responses to future warming scenarios. This study examines how external anthropogenic forcing and decadal-scale variability influence spring temperatures across the western Great Lakes region and estimates the sensitivity of regional forests to temperature using long-term growth records from tree-rings and satellite data. Using a modeling approach designed to test for regime shifts in dynamic time series, this work shows that mid-continent spring climatology was strongly influenced by the 1976/1977 phase change in North Pacific atmospheric circulation, and that regional forests show a strengthening response to spring temperatures during the last half-century.
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  • 64
    Publication Date: 2024-03-25
    Description: Enhancing ocean productivity by artificial upwelling is evaluated as a nature-based solution for food security and climate change mitigation. Fish production is intended through diatom-based plankton food webs as these are assumed to be short and efficient. However, our findings from mesocosm experiments on artificial upwelling in the oligotrophic ocean disagree with this classical food web model. Here, diatoms did not reduce trophic length and instead impaired the transfer of primary production to crustacean grazers and small pelagic fish. The diatom-driven decrease in trophic efficiency was likely mediated by changes in nutritional value for the copepod grazers. Whilst diatoms benefitted the availability of essential fatty acids, they also caused unfavorable elemental compositions via high carbon-to-nitrogen ratios (i.e. low protein content) to which the grazers were unable to adapt. This nutritional imbalance for grazers was most pronounced in systems optimized for CO2 uptake through carbon-to-nitrogen ratios well beyond Redfield. A simultaneous enhancement of fisheries production and carbon sequestration via artificial upwelling may thus be difficult to achieve given their opposing stoichiometric constraints. Our study suggest that food quality can be more critical than quantity to maximize food web productivity during shorter-term fertilization of the oligotrophic ocean.
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  • 65
    Publication Date: 2024-03-21
    Description: Among the photosynthetically active dinophytes, the Kryptoperidiniaceae are unique in having a diatom as endosymbiont instead of the widely present peridinin chloroplast. Phylogenetically, it is unresolved at present how the endosymbionts are inherited, and the taxonomic identities of two iconic dinophyte names, Kryptoperidinium foliaceum and Kryptoperidinium triquetrum, are also unclear. Multiple strains were newly established from the type locality in the German Baltic Sea off Wismar and inspected using microscopy as well as molecular sequence diagnostics of both host and endosymbiont. All strains were bi-nucleate, shared the same plate formula (i.e., po, X, 4′, 2a, 7′′, 5c, 7s, 5′′′, 2′′′′) and exhibited a narrow and characteristically L-shaped precingular plate 7′′. Within the molecular phylogeny of Bacillariaceae, endosymbionts were scattered over the tree in a highly polyphyletic pattern, even if they were gained from different strains of a single species, namely K. triquetrum. Notably, endosymbionts from the Baltic Sea show molecular sequences distinct from the Atlantic and the Mediterranean Sea, which is the first report of such a spatial fragmentation in a planktonic species of dinophytes. The two names K. foliaceum and K. triquetrum are taxonomically clarified by epitypification, with K. triquetrum having priority over its synonym K. foliaceum. Our study underlines the need of stable taxonomy for central questions in evolutionary biology.
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  • 66
    Publication Date: 2024-03-20
    Description: Climate change is expected to cause major shifts in boreal forests which are in vast areas of Siberia dominated by two species of the deciduous needle tree larch (Larix). The species differ markedly in their ecosystem functions, thus shifts in their respective ranges are of global relevance. However, drivers of species distribution are not well understood, in part because paleoecological data at species level are lacking. This study tracks Larix species distribution in time and space using target enrichment on sedimentary ancient DNA extracts from eight lakes across Siberia. We discovered that Larix sibirica, presently dominating in western Siberia, likely migrated to its northern distribution area only in the Holocene at around 10,000 years before present (ka BP), and had a much wider eastern distribution around 33 ka BP. Samples dated to the Last Glacial Maximum (around 21 ka BP), consistently show genotypes of L. gmelinii. Our results suggest climate as a strong determinant of species distribution in Larix and provide temporal and spatial data for species projection in a changing climate.
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  • 67
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    Springer Nature
    In:  EPIC3Frontiers of Earth Science, Springer Nature, 17(4), pp. 1037-1048, ISSN: 2095-0195
    Publication Date: 2024-03-19
    Description: Plant environmental DNA extracted from lacustrine sediments (sedimentary DNA, sedDNA) has been increasingly used to investigate past vegetation changes and human impacts at a high taxonomic resolution. However, the representation of vegetation communities surrounding the lake is still unclear. In this study, we compared plant sedDNA metabarcoding and pollen assemblages from 27 lake surface-sediment samples collected from alpine meadow on the central-eastern Tibetan Plateau to investigate the representation of sedDNA data. In general, the identified components of sedDNA are consistent with the counted pollen taxa and local plant communities. Relative to pollen identification, sedDNA data have higher taxonomic resolution, thus providing a potential approach for reconstructing past plant diversity. The sedDNA signal is strongly influenced by local plants while rarely affected by exogenous plants. Because of the overrepresentation of local plants and PCR bias, the abundance of sedDNA sequence types is very variable among sites, and should be treated with caution when investigating past vegetation cover and climate based on sedDNA data. Our finding suggests that sedDNA analysis can be a complementary approach for investigating the presence/absence of past plants and history of human land-use with higher taxonomic resolution.
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  • 68
    Publication Date: 2024-03-19
    Description: Background: Wildfires are recognized as an important ecological component of larch-dominated boreal forests in eastern Siberia. However, long-term fire-vegetation dynamics in this unique environment are poorly understood. Recent paleoecological research suggests that intensifying fire regimes may induce millennial-scale shifts in forest structure and composition. This may, in turn, result in positive feedback on intensifying wildfires and permafrost degradation, apart from threatening human livelihoods. Most common fire-vegetation models do not explicitly include detailed individual-based tree population dynamics, but a focus on patterns of forest structure emerging from interactions among individual trees may provide a beneficial perspective on the impacts of changing fire regimes in eastern Siberia. To simulate these impacts on forest structure at millennial timescales, we apply the individual-based, spatially explicit vegetation model LAVESI-FIRE, expanded with a new fire module. Satellite-based fire observations along with fieldwork data were used to inform the implementation of wildfire occurrence and adjust model parameters. Results: Simulations of annual forest development and wildfire activity at a study site in the Republic of Sakha (Yakutia) since the Last Glacial Maximum (c. 20,000 years BP) highlight the variable impacts of fire regimes on forest structure throughout time. Modeled annual fire probability and subsequent burned area in the Holocene compare well with a local reconstruction of charcoal influx in lake sediments. Wildfires can be followed by different forest regeneration pathways, depending on fire frequency and intensity and the pre-fire forest conditions. We find that medium-intensity wildfires at fire return intervals of 50 years or more benefit the dominance of fire-resisting Dahurian larch (Larix gmelinii (Rupr.) Rupr.), while stand-replacing fires tend to enable the establishment of evergreen conifers. Apart from post-fire mortality, wildfires modulate forest development mainly through competition effects and a reduction of the model’s litter layer. Conclusion: With its fine-scale population dynamics, LAVESI-FIRE can serve as a highly localized, spatially explicit tool to understand the long-term impacts of boreal wildfires on forest structure and to better constrain interpretations of paleoecological reconstructions of fire activity.
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  • 69
    Publication Date: 2024-03-19
    Description: In Central Yakutia (Siberia) livelihoods of local communities depend on alaas (thermokarst depression) landscapes and the lakes within. Development and dynamics of these alaas lakes are closely connected to climate change, permafrost thawing, catchment conditions, and land use. To reconstruct lake development throughout the Holocene we analyze sedimentary ancient DNA (sedaDNA) and biogeochemistry from a sediment core from Lake Satagay, spanning the last c. 10,800 calibrated years before present (cal yrs BP). SedaDNA of diatoms and macrophytes and microfossil diatom analysis reveal lake formation earlier than 10,700 cal yrs BP. The sedaDNA approach detected 42 amplicon sequence variants (ASVs) of diatom taxa, one ASV of Eustigmatophyceae (Nannochloropsis), and 12 ASVs of macrophytes. We relate diatom and macrophyte community changes to climate-driven shifts in water level and mineral and organic input, which result in variable water conductivity, in-lake productivity, and sediment deposition. We detect a higher lake level and water conductivity in the Early Holocene (c. 10,700–7000 cal yrs BP) compared to other periods, supported by the dominance of Stephanodiscus sp. and Stuckenia pectinata. Further climate warming towards the Mid-Holocene (7000–4700 cal yrs BP) led to a shallowing of Lake Satagay, an increase of the submerged macrophyte Ceratophyllum, and a decline of planktonic diatoms. In the Late Holocene (c. 4700 cal yrs BP–present) stable shallow water conditions are confirmed by small fragilarioid and staurosiroid diatoms dominating the lake. Lake Satagay has not yet reached the final stage of alaas development, but satellite imagery shows an intensification of anthropogenic land use, which in combination with future warming will likely result in a rapid desiccation of the lake.
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  • 70
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    Springer Nature
    In:  EPIC3Nature Communications, Springer Nature, 13(1), pp. 6035-6035, ISSN: 2041-1723
    Publication Date: 2024-03-19
    Description: How fast the Northern Hemisphere (NH) forest biome tracks strongly warming climates is largely unknown. Regional studies reveal lags between decades and millennia. Here we report a conundrum: Deglacial forest expansion in the NH extra-tropics occurs approximately 4000 years earlier in a transient MPI-ESM1.2 simulation than shown by pollen-based biome reconstructions. Shortcomings in the model and the reconstructions could both contribute to this mismatch, leaving the underlying causes unresolved. The simulated vegetation responds within decades to simulated climate changes, which agree with pollen-independent reconstructions. Thus, we can exclude climate biases as main driver for differences. Instead, the mismatch points at a multi-millennial disequilibrium of the NH forest biome to the climate signal. Therefore, the evaluation of time-slice simulations in strongly changing climates with pollen records should be critically reassessed. Our results imply that NH forests may be responding much slower to ongoing climate changes than Earth System Models predict.
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  • 71
    Publication Date: 2024-03-13
    Description: The cold Last Glacial Maximum, around 20,000 years ago, provides a useful test case for evaluating whether climate models can simulate climate states distinct from the present. However, because of the indirect and uncertain nature of reconstructions of past environmental variables such as sea surface temperature, such evaluation remains ambiguous. Instead, here we evaluate simulations of Last Glacial Maximum climate by relying on the fundamental macroecological principle of decreasing community similarity with increasing thermal distance. Our analysis of planktonic foraminifera species assemblages from 647 sites reveals that the similarity-decay pattern that we obtain when the simulated ice age seawater temperatures are confronted with species assemblages from that time differs from the modern. This inconsistency between the modern temperature dependence of plankton species turnover and the simulations arises because the simulations show globally rather uniform cooling for the Last Glacial Maximum, whereas the species assemblages indicate stronger cooling in the subpolar North Atlantic. The implied steeper thermal gradient in the North Atlantic is more consistent with climate model simulations with a reduced Atlantic meridional overturning circulation. Our approach demonstrates that macroecology can be used to robustly diagnose simulations of past climate and highlights the challenge of correctly resolving the spatial imprint of global change in climate models.
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  • 72
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    Springer Nature
    In:  EPIC3Nature Climate Change, Springer Nature, 14(2), pp. 1-7, ISSN: 1758-678X
    Publication Date: 2024-03-08
    Description: Ocean eddies play a critical role in climate and marine life. In the rapidly warming Arctic, little is known about how ocean eddy activity will change because existing climate models cannot resolve Arctic Ocean mesoscale eddies. Here, by employing a next-generation global sea ice–ocean model with kilometre-scale horizontal resolution in the Arctic, we find a surge of eddy kinetic energy in the upper Arctic Ocean, tripling on average in a four-degree-warmer world. The driving mechanism behind this surge is an increase in eddy generation due to enhanced baroclinic instability. Despite the decline of sea ice, eddy killing (a process in which eddies are dampened by sea ice and winds) will not weaken in its annual mean effect in the considered warming scenario. Our study suggests the importance of adequately representing Arctic eddy activity in climate models for understanding the impacts of its increase on climate and ecosystems.
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  • 73
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    Springer Nature
    In:  EPIC3Analytical and Bioanalytical Chemistry, Springer Nature, 416(6), pp. 1311-1320, ISSN: 1618-2642
    Publication Date: 2024-03-04
    Description: FTIR spectral identification is today’s gold standard analytical procedure for plastic pollution material characterization. High-throughput FTIR techniques have been advanced for small microplastics (10–500 µm) but less so for large microplastics (500–5 mm) and macroplastics (〉 5 mm). These larger plastics are typically analyzed using ATR, which is highly manual and can sometimes destroy particles of interest. Furthermore, spectral libraries are often inadequate due to the limited variety of reference materials and spectral collection modes, resulting from expensive spectral data collection. We advance a new high-throughput technique to remedy these problems using FTIR microplate readers for measuring large particles (〉 500 µm). We created a new reference database of over 6000 spectra for transmission, ATR, and reflection spectral collection modes with over 600 plastic, organic, and mineral reference materials relevant to plastic pollution research. We also streamline future analysis in microplate readers by creating a new particle holder for transmission measurements using off-the-shelf parts and fabricating a nonplastic 96-well microplate for storing particles. We determined that particles should be presented to microplate readers as thin as possible due to thick particles causing poor-quality spectra and identifications. We validated the new database using Open Specy and demonstrated that additional transmission and reflection spectra reference data were needed in spectral libraries.
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  • 74
    Publication Date: 2024-03-01
    Description: Black carbon emitted by incomplete combustion of fossil fuels and biomass has a net warming effect in the atmosphere and reduces the albedo when deposited on ice and snow; accurate knowledge of past emissions is essential to quantify and model associated global climate forcing. Although bottom-up inventories provide historical Black Carbon emission estimates that are widely used in Earth System Models, they are poorly constrained by observations prior to the late 20th century. Here we use an objective inversion technique based on detailed atmospheric transport and deposition modeling to reconstruct 1850 to 2000 emissions from thirteen Northern Hemisphere ice-core records. We find substantial discrepancies between reconstructed Black Carbon emissions and existing bottom-up inventories which do not fully capture the complex spatial-temporal emission patterns. Our findings imply changes to existing historical Black Carbon radiative forcing estimates are necessary, with potential implications for observation-constrained climate sensitivity.
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  • 75
    Publication Date: 2024-02-07
    Description: A key driving factor behind rapid Arctic climate change is black carbon, the atmospheric aerosol that most efficiently absorbs sunlight. Our knowledge about black carbon in the Arctic is scarce, mainly limited to long-term measurements of a few ground stations and snap-shots by aircraft observations. Here, we combine observations from aircraft campaigns performed over nine years, and present vertically resolved average black carbon properties. A factor of four higher black carbon mass concentration (21.6 ng m−3 average, 14.3 ng m−3 median) was found in spring, compared to summer (4.7 ng m−3 average, 3.9 ng m−3 median). In spring, much higher inter-annual and geographic variability prevailed compared to the stable situation in summer. The shape of the black carbon size distributions remained constant between seasons with an average mass mean diameter of 202 nm in spring and 210 nm in summer. Comparison between observations and concentrations simulated by a global model shows notable discrepancies, highlighting the need for further model developments and intensified measurements.
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  • 76
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    Springer Nature
    In:  EPIC3Maritime Studies, Springer Nature, 19(2), pp. 207-221, ISSN: 1872-7859
    Publication Date: 2024-02-07
    Description: Blue economy initiatives have emerged along marine and coastal areas, seeking to bring the green economy into a ‘blue world’. Often defined as a global policy agenda, blue economy discourses and practices aim to generate ‘blue growth’ by linking poverty reduction, social equality, and marine conservation. While global and national policies have spent decades addressing coastal resource management, broader blue economy discourses and practices seem, on the surface, to promote economic growth strategies for marine conservation. Increasingly, new market-oriented programs and projects aim to tap the financial value of the ocean’s ‘blue capital’, ostensibly fostering income generation and sustainable solutions for conservation finance. Drawing on critical discourse analysis and key-informant interviews across scales, we examine the meanings and practices of the blue economy in Southeast Asia and in the Philippines. As an archipelagic nation, millions of coastal dwellers in the Philippines depend on oceans as a major source of livelihood, food security, and well-being. We examine how multilateral institutions, bilateral organisations, state agencies, civil society organisations, and other key actors represent and enact the blue economy discursively and in practice. We find that oceans are being imagined as an open frontier that must be managed and utilised for both conservation and economic purposes. New territorialisation processes are creating new borders and management structures that often bypass social and environmental safeguards, posing a major threat to coastal dwellers. We conclude that by foregrounding economic development and coastal management, more socially just and environmentally sustainable governance approaches are neglected.
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  • 77
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    Springer Nature
    In:  EPIC3Scientific Reports, Springer Nature, 13(1), pp. 11861-11861, ISSN: 2045-2322
    Publication Date: 2024-01-31
    Description: Since the attribution of the bio-duck call to Antarctic minke whales (AMW Balaenoptera bonaerensis), different studies have retrospectively identified several bio-duck call types at various sites throughout the Southern Hemisphere. The function of their vocal behavior however, remains largely unknown. Further insights into their repertoire usage may help to reveal the function of their calls. Here, we use passive acoustic monitoring (PAM) data collected across six locations throughout the Weddell Sea (WS) in 2013 and from PALAOA Station (Ekström Ice Shelf, eastern WS) in 2015, 2016 and 2017. In 2013, we detected 11 bio-duck call types throughout the WS between May and December, with additional acoustic activity in February on the western recorder AMW calls fell into four general call clusters. Seasonal patterns of calls showed variability between locations and years. Furthermore, this is the first study to show that similar to other baleen whale species, AMWs also produce songs.
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  • 78
    Publication Date: 2024-01-31
    Description: The Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) was a yearlong expedition supported by the icebreaker R/V Polarstern, following the Transpolar Drift from October 2019 to October 2020. The campaign documented an annual cycle of physical, biological, and chemical processes impacting the atmosphere-ice-ocean system. Of central importance were measurements of the thermodynamic and dynamic evolution of the sea ice. A multi-agency international team led by the University of Colorado/CIRES and NOAA-PSL observed meteorology and surface-atmosphere energy exchanges, including radiation; turbulent momentum flux; turbulent latent and sensible heat flux; and snow conductive flux. There were four stations on the ice, a 10 m micrometeorological tower paired with a 23/30 m mast and radiation station and three autonomous Atmospheric Surface Flux Stations. Collectively, the four stations acquired ~928 days of data. This manuscript documents the acquisition and post-processing of those measurements and provides a guide for researchers to access and use the data products.
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  • 79
    Publication Date: 2024-01-30
    Description: In contrast to the well-recognized permafrost carbon (C) feedback to climate change, the fate of permafrost nitrogen (N) after thaw is poorly understood. According to mounting evidence, part of the N liberated from permafrost may be released to the atmosphere as the strong greenhouse gas (GHG) nitrous oxide (N2O). Here, we report post-thaw N2O release from late Pleistocene permafrost deposits called Yedoma, which store a substantial part of permafrost C and N and are highly vulnerable to thaw. While freshly thawed, unvegetated Yedoma in disturbed areas emit little N2O, emissions increase within few years after stabilization, drying and revegetation with grasses to high rates (548 (133–6286) μg N m−2 day−1; median with (range)), exceeding by 1–2 orders of magnitude the typical rates from permafrost-affected soils. Using targeted metagenomics of key N cycling genes, we link the increase in in situ N2O emissions with structural changes of the microbial community responsible for N cycling. Our results highlight the importance of extra N availability from thawing Yedoma permafrost, causing a positive climate feedback from the Arctic in the form of N2O emissions.
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  • 80
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    Springer Nature
    In:  EPIC3Scientific Reports, Springer Nature, 12(1), pp. 7123-7123, ISSN: 2045-2322
    Publication Date: 2024-01-30
    Description: Beavers were not previously recognized as an Arctic species, and their engineering in the tundra is considered negligible. Recent findings suggest that beavers have moved into Arctic tundra regions and are controlling surface water dynamics, which strongly influence permafrost and landscape stability. Here we use 70 years of satellite images and aerial photography to show the scale and magnitude of northwestward beaver expansion in Alaska, indicated by the construction of over 10,000 beaver ponds in the Arctic tundra. The number of beaver ponds doubled in most areas between ~ 2003 and ~ 2017. Earlier stages of beaver engineering are evident in ~ 1980 imagery, and there is no evidence of beaver engineering in ~ 1952 imagery, consistent with observations from Indigenous communities describing the influx of beavers over the period. Rapidly expanding beaver engineering has created a tundra disturbance regime that appears to be thawing permafrost and exacerbating the effects of climate change.
    Repository Name: EPIC Alfred Wegener Institut
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  • 81
    Publication Date: 2024-01-30
    Description: Industrial contaminants accumulated in Arctic permafrost regions have been largely neglected in existing climate impact analyses. Here we identify about 4500 industrial sites where potentially hazardous substances are actively handled or stored in the permafrost-dominated regions of the Arctic. Furthermore, we estimate that between 13,000 and 20,000 contaminated sites are related to these industrial sites. Ongoing climate warming will increase the risk of contamination and mobilization of toxic substances since about 1100 industrial sites and 3500 to 5200 contaminated sites located in regions of stable permafrost will start to thaw before the end of this century. This poses a serious environmental threat, which is exacerbated by climate change in the near future. To avoid future environmental hazards, reliable long-term planning strategies for industrial and contaminated sites are needed that take into account the impacts of cimate change.
    Repository Name: EPIC Alfred Wegener Institut
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  • 82
    Publication Date: 2024-01-24
    Description: This dataset contain stable isotope values for water samples collected ~weekly from the Rio Bermejo at the Lavalle bridge (-25.6513, -60.1277) from March 2016 to February 2018. Water samples were filtered to 0.2 micron using a custom filtration device. We measured d2H and d18O on a Picarro L-2140i Cavity Ring-Down Spectrometer at the GFZ Potsdam. Measurements were made in duplicate, normalized to the Vienna Standard Mean Ocean Water (VSMOW), and analytical uncertainty is reported as one standard deviation from the mean. River discharge was measured at the El Colorado gauging station, which is ~100 km down slope from the sampling location.
    Language: English
    Type: info:eu-repo/semantics/workingPaper
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  • 83
    Publication Date: 2024-01-24
    Description: This dataset provides the geochemistry data for the Holocene sediment sequence retrieved from Lake Uddelermeer (The Netherlands) in 2012. Additionally, alkane concentrations for a set of modern leaf samples are provided. Concentrations of fossil alkanes, GDGTs as well as elemental (C, N, S, H) and compound-specific delta Deuterium measurements are presented against both depth (cm) and age (cal yr. BP). A total of 59 samples were analysed. Modern leaf alkane concentrations are presented as concentrations, 10 samples were analysed. The geochemical data provides information about regional vegetation change as well as changes in effective precipitation. It was produced to inform on the age and duration of major environmental transitions during the middle and late Holocene. Cores were retrieved from the lake using a 3-m long handheld piston corer deployed from a floating coring platform during field work in April and May 2012. Samples were obtained from splits of the core and processed in the laboratory of the University of Amsterdam (the Netherlands) using standard protocols (CNHS, alkane concentrations), the laboratory of Utrecht University (the Netherlands; GDGT concentrations) and at GFZ Potsdam (Germany; delta Deuterium). Name of the Campaign: UDD Event Label: UDD-E Method: Uwitec piston corer Latitude: 52.24652778 Longitude: 5.76097222 Elevation: 24m asl Date/Time of event: 2012-05-01T14:00:00 Further information about event: Lake sediment sequence retrieved using a 60 mm piston corer deployed from a floating platform.
    Language: English
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  • 84
    Publication Date: 2024-01-24
    Description: Water samples were filtered to 0.2 micron prior to measurement. Samples for cation analysis were acidified in the field to pH 〈 2 using 6N HNO3. Cation concentrations were measured with a Varian 720 inductively coupled plasma optical emission spectrometer (ICP-OES) at the GFZ Helmholtz Laboratory for the Geochemistry of the Earth Surface (HELGES), using SLRS-5 (Saint-Laurent River Surface, National Research Council - Conseil National de Recherches Canada) and USGS M212 and USGS T187 as external standards. We corrected for instrument drift by measuring an internal standard (GFZ-RW1) every 10 samples and we determined measurement uncertainty using calibration curve uncertainty. Anion concentrations were measured with a Dionex ICS1100 Ion Chromatograph, using USGS standards M206 and M212 as external standards for quality control, with uncertainty determined from triplicate analysis. We corrected cation concentrations for cyclic salt inputs following Bickle et al. (2005, doi:10.1016/j.gca.2004.11.019).
    Language: English
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  • 85
    Publication Date: 2024-01-22
    Description: Arctic warming is causing ancient perennially frozen ground (permafrost) to thaw, resulting in ground collapse, and reshaping of landscapes. This threatens Arctic peoples' infrastructure, cultural sites, and land-based natural resources. Terrestrial permafrost thaw and ongoing intensification of hydrological cycles also enhance the amount and alter the type of organic carbon (OC) delivered from land to Arctic nearshore environments. These changes may affect coastal processes, food web dynamics and marine resources on which many traditional ways of life rely. Here, we examine how future projected increases in runoff and permafrost thaw from two permafrost-dominated Siberian watersheds—the Kolyma and Lena, may alter carbon turnover rates and OC distributions through river networks. We demonstrate that the unique composition of terrestrial permafrost-derived OC can cause significant increases to aquatic carbon degradation rates (20 to 60% faster rates with 1% permafrost OC). We compile results on aquatic OC degradation and examine how strengthening Arctic hydrological cycles may increase the connectivity between terrestrial landscapes and receiving nearshore ecosystems, with potential ramifications for coastal carbon budgets and ecosystem structure. To address the future challenges Arctic coastal communities will face, we argue that it will become essential to consider how nearshore ecosystems will respond to changing coastal inputs and identify how these may affect the resiliency and availability of essential food resources.
    Repository Name: EPIC Alfred Wegener Institut
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  • 86
    Publication Date: 2024-01-19
    Description: Presented are analytical data from lacustrine sediment cores, retrieved from Lake Nam Co (Tibetan Plateau). The sediment core is a composite of one gravity core, taken with a Rumohr-Meischner gravity corer (63 mm diameter) and a piston core, retrieved using an uwitec piston coring system (http://www.uwitec.at; 90 mm diameter). The composite core labelled 〈NC 08/01〉 comprises a total length of 10.378 m. The cores were obtained at N 30.737417, E 090.790333 at a water depth of 93 m on 2008-09-15. The purpose of obtaining this sediment core was to establish a high-resolution record of climate (monsoonal) and environmental change using multiple proxy data. The dataset comprises analytical data based on sedimentological, inorganic geochemical, mineralogical and isotope-geochemical methods. Specifically: sediment water content & density; magnetic susceptibility; particel size data; quantitative inorganic geochemical data (ICP-OES aqua regia and HCL digestions); semi-quantitative XRF elemental data; carbon, nitrogen, sulfur contents; qualitative mineralogical data; bulk sediment stable carbon and oxygen isotope data.
    Language: English
    Type: info:eu-repo/semantics/workingPaper
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  • 87
    Publication Date: 2024-01-19
    Description: This data set is part of a larger data harmonization effort to make lake sediment core data machine readable and comparable. Here we standardized X-ray fluorescence line scanning (XRF)-based element data of sediment core EN18208, retrieved in 2018 from Lake Ilirney (Chukotka, Russia) at 10.76 m water depth. The glacial lake Ilirney is situated in the forest tundra mountain area and has one outflow, one main inflow and several smaller inflows. It lies at an elevation of ca. 428 m a.s.l. with a surface area of ca. 30 km2 and a maximum lake water depth of estimated 44 m. The 10.76 m sediment core was retrieved by a UWITEC piston corer during the RU-Land_2018_Chukotka expedition of the Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research (AWI, Germany, Potsdam) in cooperation with the North Eastern Federal State University (NEFU, Russia, Yakutsk). The downcore elemental composition was measured using an AVAATECH x-ray fluorescence core scanner at Bundesanstalt für Geowissenschaften und Rohstoffe (BGR) in Berlin, Spandau.
    Language: English
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  • 88
    Publication Date: 2024-01-19
    Description: This data set is part of a larger data harmonization effort to make lake sediment core data machine readable and comparable. Here we standardized radiocarbon and OSL age data of sediment core EN18208, retrieved in 2018 from Lake Ilirney (Chukotka, Russia) at 10.76 m water depth. The glacial lake Ilirney is situated in the forest tundra mountain area and has one outflow, one main inflow and several smaller inflows. It lies at an elevation of ca. 428 m a.s.l. with a surface area of ca. 30 km2 and a maximum lake water depth of estimated 44 m. The 10.76 m sediment core was retrieved by a UWITEC piston corer during the RU-Land_2018_Chukotka expedition of the Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research (AWI, Germany, Potsdam) in cooperation with the North Eastern Federal State University (NEFU, Russia, Yakutsk). Radiocarbon data have been analysed from bulk sediment samples in Bremerhaven at the MICADAS laboratory. Optically stimulated luminescence (OSL) dating was performed at the Royal Holloway Luminescence Laboratory using a Risø TL/OSL-DA-15 automated dating system.
    Language: English
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  • 89
    Publication Date: 2024-01-19
    Description: A 25-cm long predominantly aragonite stalagmite was collected November 2, 2005 from Dharamjali Cave (29.5°N, 80.2°E) in the central Himalayas. This dataset contains stable isotope, trace element, XRF, U/Th dating, and dripwater data. The age model spans 4.2 to 2.3 ka BP, and the dataset records seasonal shifts in hydroclimate from 4.2 to 3.1 ka BP. Using the DHAR-1A half of the speleothem, 750 samples were milled at 100–300 µm resolution for stable isotope analysis (δ18O and δ13C) and analyzed at GFZ Potsdam. Further high-resolution stable isotope analysis at the University of Cambridge included 876 samples from the bottom 4 cm of the mirroring slab DHAR-1B, covering c. 4.2–3.6 ka BP. The δ44/40Ca measurements were made on 60 aragonite samples of aragonite and 1 calcite sample milled between 4.2 and 2.8 ka BP. The elemental composition of DHAR-1B was determined first with an Avaatech XRF scanner at the University of Cambridge, and later using laser ablation inductively-coupled plasma mass spectrometry (LA-ICP-MS) at the University of Waikato. U-series dating was performed at Caltech on 22 samples. Twelve U-series ages (between 2.55 and 4.14 ka BP) were used to construct the age models, using ensembles of 2000 Monte Carlo simulations for each proxy using the MATLAB-based COPRA script (Breitenbach et al., 2012, https://doi.org/10.5194/cp-8-1765-2012).
    Language: English
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  • 90
    Publication Date: 2024-01-19
    Description: This data set is part of a larger data harmonization effort to make lake sediment core data machine readable and comparable. Here we standardized grain size element data of sediment core EN18208, retrieved in 2018 from Lake Ilirney (Chukotka, Russia) at 10.76 m water depth. The glacial lake Ilirney is situated in the forest tundra mountain area and has one outflow, one main inflow and several smaller inflows. It lies at an elevation of ca. 428 m a.s.l. with a surface area of ca. 30 km2 and a maximum lake water depth of estimated 44 m. The 10.76 m sediment core was retrieved by a UWITEC piston corer during the RU-Land_2018_Chukotka expedition of the Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research (AWI, Germany, Potsdam) in cooperation with the North Eastern Federal State University (NEFU, Russia, Yakutsk). Grain-size was measured using a Malvern Mastersizer 3000 laser diffraction particle analyser.
    Language: English
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  • 91
    Publication Date: 2024-01-19
    Description: This data set is part of a larger data harmonization effort to make lake sediment core data machine readable and comparable. Here we standardized mineral data of sediment core EN18208, retrieved in 2018 from Lake Ilirney (Chukotka, Russia) at 10.76 m water depth. The glacial lake Ilirney is situated in the forest tundra mountain area and has one outflow, one main inflow and several smaller inflows. It lies at an elevation of ca. 428 m a.s.l. with a surface area of ca. 30 km2 and a maximum lake water depth of estimated 44 m. The 10.76 m sediment core was retrieved by a UWITEC piston corer during the RU-Land_2018_Chukotka expedition of the Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research (AWI, Germany, Potsdam) in cooperation with the North Eastern Federal State University (NEFU, Russia, Yakutsk). Bulk mineralogy was analysed by (x-ray diffractometry (XRD) using a (PHILIPS, Netherlands) PW1820 goniometer.
    Language: English
    Type: info:eu-repo/semantics/workingPaper
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  • 92
    Publication Date: 2024-01-19
    Description: This data set is part of a larger data harmonization effort to make lake sediment core data machine readable and comparable. Here we standardized radiocarbon and OSL age data of sediment core EN18208, retrieved in 2018 from Lake Ilirney (Chukotka, Russia) at 10.76 m water depth. The glacial lake Ilirney is situated in the forest tundra mountain area and has one outflow, one main inflow and several smaller inflows. It lies at an elevation of ca. 428 m a.s.l. with a surface area of ca. 30 km2 and a maximum lake water depth of estimated 44 m. The 10.76 m sediment core was retrieved by a UWITEC piston corer during the RU-Land_2018_Chukotka expedition of the Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research (AWI, Germany, Potsdam) in cooperation with the North Eastern Federal State University (NEFU, Russia, Yakutsk). Water content and organic matter was analysed at AWI Potsdam. Dried and milled samples were analysed using a Vario EL III carbon-nitrogen-sulphur analyser. Organic carbon content was determined using a Vario MAX C analyser.
    Language: English
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  • 93
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    Springer Nature
    In:  EPIC3Nature Reviews Earth & Environment, Springer Nature, 4(3), pp. 141-141, ISSN: 2662-138X
    Publication Date: 2024-01-18
    Repository Name: EPIC Alfred Wegener Institut
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  • 94
    Publication Date: 2024-01-02
    Description: Global biodiversity loss and mass extinction of species are two of the most critical environmental issues the world is currently facing, resulting in the disruption of various ecosystems central to environmental functions and human health. Microbiome-targeted interventions, such as probiotics and microbiome transplants, are emerging as potential options to reverse deterioration of biodiversity and increase the resilience of wildlife and ecosystems. However, the implementation of these interventions is urgently needed. We summarize the current concepts, bottlenecks and ethical aspects encompassing the careful and responsible management of ecosystem resources using the microbiome (termed microbiome stewardship) to rehabilitate organisms and ecosystem functions. We propose a real-world application framework to guide environmental and wildlife probiotic applications. This framework details steps that must be taken in the upscaling process while weighing risks against the high toll of inaction. In doing so, we draw parallels with other aspects of contemporary science moving swiftly in the face of urgent global challenges.
    Repository Name: EPIC Alfred Wegener Institut
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  • 95
    Publication Date: 2023-12-28
    Description: The aim of this paper is to investigate, through fnancial-statement analyzes, the economic fnancial performance of Italian hotels, after the international economic crisis, also con sidering the possible macro-regional diferences. The study focuses the fnancial state ments of 5473 hotels from 2009 to 2018. National data are also disaggregated in the three macro-areas that characterize Italy for diferent social and economic aspects. Anova test and Tukey–Kramer test are used. Results show that the crisis afected proftability. Ital ian hotels have a low capitalization, unable to cope with the large structural investments that require signifcant debts. The proftability indicators record similar trends in the three macro-areas, while the fnancial independence index and the coverage index show signif cant diferent values in the three observed areas. Therefore, in the digital era, Italian hotel industry has all the potential to restructure itself. Here fve ratios are considered to observe medium sized hotels. Future research with other variables will be useful, even on smaller hotels, and the analysis of their trends by cohorts of companies is necessary, as well as the integration of quantitative data with qualitative evidence. This paper encourages the cul ture of temporal sector comparison, re-evaluating the potential of accounting information systems, in order to promote data-based growth and development strategies. Furthermore, it contains indications for government ofcials, as well as for countries in the process of developing the hospitality sector following the example of the Italian experience.
    Description: Published
    Description: 383–407
    Description: OSA5: Energia e georisorse
    Description: JCR Journal
    Keywords: Italian hotels ; Tourism in Italy ; Economic-fnancial performance ; Crisis
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 96
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    Springer Nature
    In:  EPIC3Marine Biodiversity, Springer Nature, 53(6), pp. 72-72, ISSN: 1867-1616
    Publication Date: 2023-12-06
    Description: One of the key challenges in managing eutrophication in coastal marine ecosystems is the harmonized cross-border assessment of phytoplankton. Some general understanding of the consequences of shifting nutrient regimes can be derived from the detailed investigation of the phytoplankton community and its biodiversity. Here, we combined long-term monitoring datasets of German and Dutch coastal stations and amended these with additional information on species biomass. Across the integrated and harmonized dataset, we used multiple biodiversity descriptors to analyse temporal trends in the Wadden Sea phytoplankton. Biodiversity, measured as the number of species (S) and the effective number of species (ENS), has decreased in the Dutch stations over the last 20 years, while biomass has increased, indicating that fewer species are becoming more dominant in the system. However, biodiversity and biomass did not show substantial changes in the German stations. Although there were some differences in trends between countries, shifts in community composition and relative abundance were consistent across stations and time. We emphasise the importance of continuous and harmonized monitoring programmes and multi-metric approaches that can detect changes in the communities that are indicative of changes in the environment.
    Repository Name: EPIC Alfred Wegener Institut
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  • 97
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    Springer Nature
    In:  EPIC3Microbiome, Springer Nature, ISSN: 2049-2618
    Publication Date: 2023-11-25
    Description: Background The RCA (Roseobacter clade affiliated) cluster belongs to the family Roseobacteracea and represents a major Roseobacter lineage in temperate to polar oceans. Despite its prevalence and abundance, only a few genomes and one described species, Planktomarina temperata, exist. To gain more insights into our limited understanding of this cluster and its taxonomic and functional diversity and biogeography, we screened metagenomic datasets from the global oceans and reconstructed metagenome-assembled genomes (MAG) affiliated to this cluster. Results The total of 82 MAGs, plus five genomes of isolates, reveal an unexpected diversity and novel insights into the genomic features, the functional diversity, and greatly refined biogeographic patterns of the RCA cluster. This cluster is subdivided into three genera: Planktomarina, Pseudoplanktomarina, and the most deeply branching Candidatus Paraplanktomarina. Six of the eight Planktomarina species have larger genome sizes (2.44–3.12 Mbp) and higher G + C contents (46.36–53.70%) than the four Pseudoplanktomarina species (2.26–2.72 Mbp, 42.22–43.72 G + C%). Cand. Paraplanktomarina is represented only by one species with a genome size of 2.40 Mbp and a G + C content of 45.85%. Three novel species of the genera Planktomarina and Pseudoplanktomarina are validly described according to the SeqCode nomenclature for prokaryotic genomes. Aerobic anoxygenic photosynthesis (AAP) is encoded in three Planktomarina species. Unexpectedly, proteorhodopsin (PR) is encoded in the other Planktomarina and all Pseudoplanktomarina species, suggesting that this light-driven proton pump is the most important mode of acquiring complementary energy of the RCA cluster. The Pseudoplanktomarina species exhibit differences in functional traits compared to Planktomarina species and adaptations to more resource-limited conditions. An assessment of the global biogeography of the different species greatly expands the range of occurrence and shows that the different species exhibit distinct biogeographic patterns. They partially reflect the genomic features of the species. Conclusions Our detailed MAG-based analyses shed new light on the diversification, environmental adaptation, and global biogeography of a major lineage of pelagic bacteria. The taxonomic delineation and validation by the SeqCode nomenclature of prominent genera and species of the RCA cluster may be a promising way for a refined taxonomic identification of major prokaryotic lineages and sublineages in marine and other prokaryotic communities assessed by metagenomics approaches.
    Repository Name: EPIC Alfred Wegener Institut
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  • 98
    Publication Date: 2023-11-23
    Description: Krill (Euphausia superba) and salps (Salpa thompsoni) are key macrozooplankton grazers in the Southern Ocean ecosystem. However, due to differing habitat requirements, both species previously exhibited little spatial overlap. With ongoing climate change-induced seawater temperature increase and regional sea ice loss, salps can now extend their spatial distribution into historically krill-dominated areas and increase rapidly due to asexual reproduction when environmental conditions are favorable. Understanding the potential effects on krill is crucial, since krill is a species of exceptional trophic significance in the Southern Ocean food web. Negative impacts on krill could trigger cascading effects on its predators and prey. To address this question, we combined two individual-based models on salps and krill, which describe the whole life cycle of salp individuals and the dynamic energy budget of individual krill. The resulting new model PEKRIS (PErformance of KRIll vs. Salps) simulates a krill population for 100 years under varying chlorophyll-a concentrations in the presence or absence of salps. All of the investigated krill population properties (abundance, mean length, and yearly egg production) were significantly impacted by the presence of salps. On the other hand, salp density was not impacted if krill were present. The medians of krill population properties deviated during variable maximum chlorophyll-a density per year when salps were introduced by − 99.9% (− 234 individuals per 1000 m3) for krill density, − 100% (− 22,062 eggs per 1000 m3) for krill eggs and − 0.9% (− 0.3 mm) for mean length of krill. If both species compete for the same food resource in a closed space, salps seem to inhibit krill populations. Further simulation studies should investigate whether this effect prevails if different phytoplankton sizes and consumption preferences of krill are implemented. Furthermore, direct predation of the two species or consumption of krill fecal pellets by salps could change the impact size of the food competition.
    Repository Name: EPIC Alfred Wegener Institut
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  • 99
    Publication Date: 2023-11-16
    Repository Name: EPIC Alfred Wegener Institut
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  • 100
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    Springer Nature
    In:  EPIC3The ISME Journal: Multidisciplinary Journal of Microbial Ecology, Springer Nature, 16(8), pp. 2002-2014, ISSN: 1751-7362
    Publication Date: 2023-11-14
    Description: Genome analyses predict that the cofactor cobalamin (vitamin B12, called B12 herein) is produced by only one-third of all prokaryotes but almost all encode at least one B12-dependent enzyme, in most cases methionine synthase. This implies that the majority of prokaryotes relies on exogenous B12 supply and interacts with producers. B12 consists of a corrin ring centred around a cobalt ion and the lower ligand 5’6-dimethylbenzimidazole (DMB). It has never been tested whether availability of this pivotal cofactor, DMB or its intermediate α-ribazole affect growth and composition of prokaryotic microbial communities. Here we show that in the subtropical, equatorial and polar frontal Pacific Ocean supply of B12 and α-ribazole enhances heterotrophic prokaryotic production and alters the composition of prokaryotic and heterotrophic protist communities. In the polar frontal Pacific, the SAR11 clade and Oceanospirillales increased their relative abundances upon B12 supply. In the subtropical Pacific, Oceanospirillales increased their relative abundance upon B12 supply as well but also downregulated the transcription of the btuB gene, encoding the outer membrane permease for B12. Surprisingly, Prochlorococcus, known to produce pseudo-B12 and not B12, exhibited significant upregulation of genes encoding key proteins of photosystem I + II, carbon fixation and nitrate reduction upon B12 supply in the subtropical Pacific. These findings show that availability of B12 and α-ribazole affect growth and composition of prokaryotic and protist communities in oceanic systems thus revealing far-reaching consequences of methionine biosynthesis and other B12-dependent enzymatic reactions on a community level.
    Repository Name: EPIC Alfred Wegener Institut
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