ISSN:
1432-1432
Keywords:
DNA replication
;
Misincorporation
;
Correction
;
Nucleotide precursors
;
Variation in mutation rate
;
Variation in G + C content
Source:
Springer Online Journal Archives 1860-2000
Topics:
Biology
Notes:
Abstract Based on the biochemical kinetics of DNA replication and mutagenesis, including misincorporation and correction, a model has been developed for studying the relationships among the mutation rate (u), the G + C content of the sequence (f), and the G + C proportion in the nucleotide precursor pool (N). Also a measure for the next-nucleotide effect, called the maximum capacity of the next-nucleotide effect (MC), has been proposed. Under the normal physiological conditions of mammalian germ cells, our results indicate: (1) the equilibrium G + C content in a sequence is approximately equal to the G + C proportion in the nucleotide precursor pool, i.e., f ≈ N, which is independent of the next-nucleotide effect; (2) an inverted-V-shaped distribution of mutation rates with respect to G + C contents is predicted, when the next-nucleotide effect is week, i.e., MC ≈ 1; (3) the distribution becomes flatter (i.e., inverted-U-shaped) as MC increases, but the peak at 50% GC is still observed when MC 〈 2; and (4) the peak disappears when MC 〉 2.8, that is, when the next-nucleotide effect becomes strong. Our results suggest that changes in the relative concentrations of nucleotide precursors can cause variations among genes both in mutation rate and in G + C content and that compositional isochores (DNA segments with a homogeneous G + C content) can arise in a genome due to differences in replication times of DNA segments.
Type of Medium:
Electronic Resource
URL:
http://dx.doi.org/10.1007/BF00178846
