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  • 101
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 378-386 
    ISSN: 0894-3230
    Keywords: alkylboronic acids ; arylboronic acids ; ab initio ; MM3 ; molecular mechanics ; force field parameters ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The boronic acid functional group has been incorporated into various biologically important compounds. In order to study this class of compounds better with molecular mechanics, five alkyl- and arylboronic acids were calculated using ab initio methods (Spartan) at the RHF/6-31G* level. MM3 force field parameters were developed based on the theoretically calculated geometries, vibrational spectra, and torsional profiles. © 1998 John Wiley & Sons, Ltd.
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  • 102
    ISSN: 0894-3230
    Keywords: γ-lactones ; base-catalysed hydrolysis ; reactivity-structure correlations ; isobenzofuranones ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Rate coefficients were measured for the base-catalysed hydrolysis of a series of substituted 3-(phenoxy- or thiophenoxymethylene)-(Z)-1(3H)-isobenzfuranones (3-phenoxy- or thiophenoxymethylenephthalides) in 70% (v/v) aqueous dioxane at 30.0 °C, in addition to the carbonyl stretching frequencies in chloroform and tetrachloromethane following deconvolution and band separation, when required. The Hammett reaction constants for the alkaline hydrolysis of the 3-/4-substituted phenoxy and thiophenoxy series are ca 0.75 and 1.10, respectively. These results are related to electrostatic field and resonance effects. Successful correlations between the carbonyl stretching frequencies and substituent constants and the rates of alkaline hydrolysis were found. Computational studies using the semi-empirical AM1 method correctly model both the details of the mechanistic pathway and the substituent effects. © 1998 John Wiley & Sons, Ltd.
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  • 103
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 437-447 
    ISSN: 0894-3230
    Keywords: inductive constants ; theoretical estimation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A new model of the inductive effect is proposed, allowing highly accurate theoretical calculations of inductive constants for a diversity of substituents, using a simple and readily available system of mathematics. According to this approach, the inductive effect of a substituent is considered in terms of the additive influence of its constituent atoms. A constant inherent capacity for inductive interaction with a reactive center (with a four-coordinate carbon atom chosen for such a center), represented by an atomic constant σA, is ascribed to each atom. Values of σA for a wide variety of atoms are determined, and their physical meaning is revealed to elucidate to a certain extent the physical nature of the inductive effect. In addition, the proposed model permits the convenient use in calculations of group constants σG characterizing the inductive power of groups. Values of σG are determined for molecular fragments that are most widely dealt with in organic chemistry, and the use of σA or σG constants and of their superposition is shown to have, in most cases, little or no effect on the accuracy and reproducibility of the results obtained. It is also shown that, in terms of the developed approach, the inductive effect of a substituent is closely associated with its conformation. Theoretical inductive constants were calculated for 427 organic, aromatic, organometallic and charged substituents, and they showed perfect correlation with the corresponding experimental values. © 1998 John Wiley & Sons, Ltd.
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  • 104
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 448-454 
    ISSN: 0894-3230
    Keywords: mandelic acid ; alkaline permanganate ; oxidation ; kinetics ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The kinetics of the oxidation of mandelic acid (MA) by permanganate in aqueous alkaline medium at a constant ionic strength of 1.0 mol dm-3 were studied spectrophotometrically. The reaction shows first-order kinetics in [permanganate ion] and fractional order dependences in [MA] and [alkali]. Addition of products, manganate and aldehyde have no significant effect on the reaction rate. An increase in ionic strength and a decrease in dielectric constant of the medium increase the rate. The oxidation process in alkaline medium under the conditions employed in the present investigation proceeds first by formation of an alkali permanganate complex, which combines with mandelic acid to form another complex. The latter decomposes slowly followed by a fast reaction between the free radical of mandelic acid and another molecule of permanganate to give products. The reaction constants involved in the mechanism were derived. There is good agreement between the observed and calculated rate constants under different experimental conditions. The reaction was studied at different temperatures and activation parameters were computed with respect to the slow step of the proposed mechanism. © 1998 John Wiley & Sons, Ltd.
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  • 105
    ISSN: 0894-3230
    Keywords: γ-lactones ; base-catalysed hydrolysis ; substituted isobenzofuranones ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Rate coefficients were measured for the base-catalysed hydrolysis of a series of γ-lactones, i.e. 39 substituted 3-(aryl- and alkylmethylene)-(Z)-1(3H)-isobenzofuranones (3-aryl- and alkylmethylenephthalides) in 70% (v/v) aqueous dioxane at 30·0 °C. A Hammett reaction constant for the 3- or 4-substituted phenyl series is ca 1·5, whereas those for the 2-substituted phenyl and 4-substituted 1-naphthyl series, using para-σ values, are ca 1·0 and 1·9. These results are related to an electrostatic field effect model. A very successful correlation between the rates of alkaline hydrolysis of all 39 phthalides and the carbonyl stretching frequencies in chloroform was found. Substituent effects in widely different environments give linearly related effects on both reactivity and physical properties. Computational studies using the semi-empirical AM1 method correctly modelled both the details of the mechanistic pathway and the substituent effects. © 1997 John Wiley & Sons, Ltd.
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  • 106
    Electronic Resource
    Electronic Resource
    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 495-503 
    ISSN: 0894-3230
    Keywords: substituent effect ; Yukawa-Tsuno equation ; resonance demand ; pyridine basicity ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: An improved Yukawa-Tsuno equation was obtained by inserting the resonance demand parameter r in the tetralinear extension of the Hammett equation constrained by a hyperbolic relation between meta and para substituent effects. The new equation with five adjustable parameters and other Yukawa-Tsuno models were applied to selected literature data for the ionization equilibria of 21 meta- and 20 para-substituted pyridinium ions in water at 25 °C. The data are best described by the new equation using either the sigma-benzoic acid scale with r = 1.35 ± 0.16 or a truncated sigma-plus scale (in which sigma-zero constants are assigned to 4-alkyl substituents) with r = 0.29 ± 0.04. Standard errors were estimated by Monte Carlo simulation. The results for the pyridinium ion demonstrate that the hyperconjugative effect by alkyl groups is inoperative and that through-resonance effects by electron-donating substituents are considerably hindered. The origin of this hindrance is ascribed to the particularities of nitrogen orbitals in heteroaromatic compounds. It is concluded that the pyridine reactivity lies between those of benzoic acid and benzylic cation, being much closer to the former. © 1998 John Wiley & Sons, Ltd.
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  • 107
    Electronic Resource
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 697-700 
    ISSN: 0894-3230
    Keywords: Primary alcohols ; secondary alcohols ; oxidation ; cerium (IV) ; chromium(III) catalysis ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The cerium(IV) oxidation of isobutanol, isoamyl alcohol isopropyl alcohol, and secondary butanol catalysed by chromium(III) was studied in sulphuric and perchloric acid mixture at 30 °C. The reaction was found to proceed with the formation of a chromium(IV) intermediate followed by its complexation with alcohol. The complex thus formed decomposed into an aldehyde or ketone by a two-electron hydride ion transfer. The formation constants for complexes were determined from Michaelis-Menten plots. The accelerating effect of [H+] on the reaction is attributed to the formation of active species, HCe(SO4)3- and HAlcohol+, of the oxidant and alcohol, respectively. The activation parameters were also determined and an isokinetic plot was found to be linear. © 1998 John Wiley & Sons, Ltd.
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  • 108
    ISSN: 0894-3230
    Keywords: phenyllithium ; E-cinnamaldehyde ; organolithium ; addition ; mechanism ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The reaction of phenyllithium (PhLi) with E-cinnamaldehyde (1) has been fully examined. Besides the main product E-1,3-diphenyl-2-propen-1-ol (2), three other by-products were detected: E-cinnamyl alcohol (3), E-chalcone (4) and E-1,3-diphenylpropanone (5). The effect of several variables on the nature and relative yields of products was examined. In all the solvents studied, the selectivity of the reaction was higher at higher temperatures, probably owing to aggregation effects; at lower temperatures the reaction is slower and the amount of by-products increases. The addition is complete in 1 h at 0 °C in THF for a [PhLi]:[1] ratio of 1:1, and longer reaction times have almost no effect, while for the reaction in toluene the amount of by-products increases when the reaction mixture is allowed to stand. The concentration of the reagents has no important effect on the reaction as long as the ratio is kept equal to 1:1. The influence of light was examined and a marked decrease in the selectivity of the reaction was observed. When the reaction was carried out in the presence of radical traps, no by-products were detected. Finally, for a [PhLi]:[1] ratio of 3:1 the main product is the dihydrochalcone 5, especially for long reaction times. All the above results could be interpreted in a reaction scheme involving electron transfer from PhLi to 1, and further reaction of the radical ions formed as well as reaction of dimeric PhLi without previous deaggregation when the ratio is 3:1.­© 1998 John Wiley & Sons, Ltd.
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  • 109
    Electronic Resource
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 546-560 
    ISSN: 0894-3230
    Keywords: molecular optoelectronics ; bio-optoelectronics ; photoisomerizable monolayers ; functionalized electrodes ; photoactive monolayers ; photochemical switch ; optical switches ; molecular electronic gates ; cytochrome c ; cytochrome oxidase ; protein monolayer interactions ; quartz crystal microbalance ; photochromic compounds ; redox switch ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Molecular and biomolecular optobioelectronic systems that yield the amperometric transduction of recorded optical signals are described. Phenoxynaphthacene quinone is assembled as a monolayer on an Au electrode. Photoisomerization of the monolayer between the redox-active trans-quinone state and the redox-inactive ‘ana’-quinone state provides a means to transduce electrochemically optical signals recorded by the monolayer. Coupling of the redox-active trans-quinone monolayer electrode to the secondary reduction of N,N′-dibenzyl-4,4′-bipyridinium, BV2+, provides a means to amplify the transduced current. As the redox potential of the trans-quinone monolayer is pH dependent, the electrocatalyzed monolayer-mediated reduction of BV2+ is controlled by light and the pH. The system represents an ‘AND’ gated molecular electronic assembly. A thiol nitrospiropyran monolayer was assembled on an Au electrode. The functionalized electrode acts as photo-triggered ‘command interface’ that controls the electrooxidation of dihydroxyphenylacetic acid (DPAA). The electrical properties of the monolayer are controlled by the photoisomer state of the monolayer and the pH of the medium. The monolayer in the nitromerocyanine state exists at pH 9.2 and 7.0 in zwitterionic or positively charged states, respectively. Electrooxidation of the negatively charged substrate, DPPA, is enhanced only in the presence of the protonated nitromerocyanine monolayer electrode. This permits the gated oxidation of the substrate by two complementary triggering signals, light and pH. A mixed monolayer consisting of nitrospiropyran and thiolpyridine units assembled on an Au electrode is applied as a photoisomerizable command surface for controlling the electrical contact of cytochrome c (Cyt c) with the electrode. In the nitrospiropyran-pyridine configuration electrical contact of Cyt c and the electrode is attained by the association of Cyt c to pyridine promoter sites. Photoisomerization of the monolayer to the protonated nitromerocyanine state results in the electrostatic repulsion of Cyt c from the monolayer, and the electrical contact of Cyt c with the electrode is blocked. Coupling of the electrically contacted Cyt c and nitrospiropyran-pyridine monolayer electrode configuration to the cytochrome oxidase biocatalyzed reduction of oxygen provides a means to amplify the transduced amperometric response. The photostimulated association and dissociation of Cyt c to and from the photoisomerizable monolayer were confirmed by microgravimetric, quartz crystal microbalance analyses. The system mimics the function of the native vision process. © 1998 John Wiley & Sons, Ltd.
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  • 110
    Electronic Resource
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    Chichester : Wiley-Blackwell
    Journal of Physical Organic Chemistry 11 (1998), S. 670-677 
    ISSN: 0894-3230
    Keywords: abnormal Reimer-Tiemann reaction ; theoretical study ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The molecular mechanism for the pyrrole ring expansion to yield 3-chloropyridine, as a model of the abnormal Reimer-Tiemann rearrangement, was characterized theoretically in vacuo by means of the HF/6-31G* computational method. The electron correlation was estimated at the MP2/6-31G* level and by calculations based on density functional theory, B3LYP/6- 31G* and B3LYP/6- 31+G*. Solvent effects of the diethyl ether and ethanol media were analyzed by using a polarizable continuum model. The stationary points were characterized with analytical gradient techniques in the gas phase and insolvents. The topology of the potential energy surfaces calculated at the MP2/6-31G* and B3LYP/6-31G* levels shows that the molecular mechanism corresponds to an inverted energy profile along one intermediate, associated with the addition of dichlorocarbene at the β-position of the pyrrole anion, and only one transition structure related to the ring expansion associated with the breaking and forming of Cα - Cβ and C - Cα bonds, respectively, and the Cl- leaving process. © 1998 John Wiley & Sons, Ltd.
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  • 111
    ISSN: 0894-3230
    Keywords: lanthanide ion ; hydrolysis ; α-amino acid esters ; α-amino acid amides ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Lanthanide ion-induced hydrolyses of methyl esters, ethyl esters, and amides of α-amino acids were systematically studied. In the hydrolysis of the alkyl esters, all the lanthanide ions are effective and the catalytic activities decrease in the order Ce(III), Nd(III) 〉 Sm(III) 〉 Eu(III) 〉 Gd(III), Ce(IV) 〉 Pr(III) 〉 Dy(III), Tb(III), Er(III), Ho(III), Tm(III) 〉 La(III), Lu(III), Yb(III). For the hydrolysis of the amides, however, the Ce(IV) ion is overwhelmingly more active than other lanthanide(III) and non-lanthanide ions. The results are interpreted in terms of the difference in the rate-limiting step for these two reactions. © 1998 John Wiley & Sons, Ltd.
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  • 112
    ISSN: 0894-3230
    Keywords: alkyltrimethylammonium bromides ; sodium alkylsulphates ; partial molar volumes ; partial molar isentropic compressibilities ; hydration ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Density and sound velocity data for aqueous solutions at 298.2 K containing alkyltrimethylammonium bromides and sodium alkylsulphates were analysed to yield partial molar volumes and isentropic compressions. The calculated contributions of methylene groups to the properties of alkyltrimethylammonium cations and alkylsulphate anions show no dependence on position in the alkyl chains and a common contribution to the ionic partial molar volumes over the range methyl ≤ n-octyl for the sulphates and n-propyl ≤ n-hexyl for the alkyltrimethylammonium ions. However, a switch in head group from trimethylammonium to sulphate changes the contribution of methylene groups to estimated partial molar isentropic compressibilities. The reasons for this sensitivity are discussed in terms of hydration characteristics. © 1998 John Wiley & Sons, Ltd.
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  • 113
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A theoretical study of the catalytic mechanism of lactate dehydrogenase enzyme on different model systems was carried out with the help of the PM3 semi-empirical procedure and an ab initio method at the 4-31G and 6-31G** basis sets at a Hartree-Fock (HF) level of theory.The geometry, transition vector (TV) and electronic structure of the transition structure (TS) for the acid-catalysed hydride reduction were obtained. The dependence of these properties on the computing method and model system is analysed and discussed. Proton transfer is much more advanced than hydride transfer occurring in roughly perpendicular planes. All the TSs render very similar structural features, the control of the chemical reaction being associated with the hydride transfer process. A comparison among simple and sophisticated molecular models shows that the TS seems to be structurally a rather robust entity. There is a minimal molecular model with a TS which describes the essentials of the chemical interconversion step in a given enzyme mechanism and the corresponding TV is an invariant feature.
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  • 114
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    Journal of Physical Organic Chemistry 9 (1996), S. 507-513 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Adamantane and 1,3,5,7-tetradeuterioadamantane were oxidized by RuO4 in two solvent systems, CCl4-CH3CN-H2O and acetone-water, yielding two kinetic deuterium isotope effects (KIEs), 4·8 ± 0·2 and 7·8 ± 0·1, respectively, very similar to those obtained in analogous reactions with cis-decalin and perdeuterio-cis-decalin, 4·8 and 6·8. These results were interpreted as primary KIEs and small or negligible secondary KIEs. From this, sp2-hybridized intermediates were not involved in the reaction path. The kinetic effect of the solvent was investigated by performing the reaction in aqueous acetone and acetonitrile. The rates were correlated with Grunwald-Winstein Y values and with Reichardt ET (30) values. Both correlations showed the reaction to be only moderately dependent on the solvent polarity. 1-Substituted adamantanes were oxidized in CCl4-CH3CN giving a Taft ρ* value of -2·5 ± 0·1. These results were regarded as support for a reaction consisting of a pre-equilibrium with formation of a substrate-RuO4 complex followed by a rate-determining concerted reaction. The results did not support a reaction mechanism with a carbocation or radical intermediate, or a scheme with two competing reactions, one with a carbocation intermediate and the other with a concerted mechanism.
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  • 115
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The product ion distributions and rates of the gas-phase reactions of two series of (radical) anions with chloro- and bromomethanes (CH3Cl, CH2Cl2, CHCl3, CCl4, CH3Br, CH2Br2, CHBr3 and CBr4) were determined with the use of Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry. The first series consists of anions (HO-, CH3O-, C2H5O-, C3H7O- and CH3S-), for which the corresponding neutral radicals have a relatively high electron affinity (EA 〉 150 kJ mol-1). The second series consists of (radical) anions (CH2S-·, CH2(DOUBLE BOND)CHCH2-, CH2(DOUBLE BOND)C(CH3)CH2-, C6H4-· and C6H5-), for which the corresponding neutral species have a relatively low electron affinity (EA ≤ 100 kJ mol-1). These (radical) anions react mainly with the halomethanes to afford (i) halide ions, (ii) halomethyl anions with the same number of halogen atoms as in the parent halomethane and (iii) halomethyl anions with one halogen atom less than the parent substrate. The last process involves nucleophilic attack on a halogen atom and is particularly important in the reactions with substrates containing three or four halogen atoms. The halide ions may arise by a number of different pathways, such as SN2 substitution, α-elimination, halogen attack followed by dissociation of the thus formed halomethyl anion and overall dissociative electron transfer. The SN2 process is held responsible for the formation of halide ions in the reactions with monohalomethanes, whereas α-elimination is likely to be of importance only for the reactions with trichloro- and tribromomethanes. Attack on a halogen atom followed by dissociation of the ion generated initially is likely to be important if CCl4 or CBr4 is the substrate. Electron transfer is only a dominant pathway in the reactions of the CH2S-· ion with the halomethanes. The occurrence of electron transfer in the reactions of this ion with CHCl3, CCl4 and CHBr3 is evidenced by the formation of minor amounts of stable halomethane radical anions in addition to the generation of CH2SCl- or CH2SBr- ions and abundant halide ions. The interplay between the various possible reactions is discussed on the basis of thermodynamic considerations and the rates of the overall processes.
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  • 116
    ISSN: 0894-3230
    Keywords: competitive reactivity ; reaction coordinates ; gas-phase ion-molecule chemistry ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---Using the method of competitive reactivity of two functional groups in the same molecule, anionic elimination reactions show considerable kinetic selectivity for small differences in leaving group thermochemistry, in structures of the general type YCH2CH2CH2Z, where Y and Z are good anionic leaving groups. © 1997 John Wiley & Sons, Ltd.
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  • 117
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    Journal of Physical Organic Chemistry 10 (1997), S. 612-622 
    ISSN: 0894-3230
    Keywords: neural networks ; structure-odour relationships ; sandalwood ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Neural networks have proved to be particularly successful in their ability to identify non-linear relationships. This paper shows that a three-layer back-propagation neural network is able to learn the relationship between the sandalwood odour and molecular structures of 85 organic compounds belonging to acyclic, cyclohexyl, norbornyl, campholenyl and decalin derivatives. Four steric and three electronic parameters were used to describe each molecular structure. Odour was coded by a binary variable. The neural network was used to classify the compounds into two groups and to predict their odours (sandalwood or non-sandalwood). The results obtained were compared with those given by discriminant analysis, and found to be better. The most important descriptors were revealed on the basis of correlation analysis. © 1997 John Wiley & Sons, Ltd.
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  • 118
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    Journal of Physical Organic Chemistry 10 (1997), S. 631-636 
    ISSN: 0894-3230
    Keywords: chlorine transfer ; N-chlorosuccinimide ; amino compounds ; kinetics ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---A kinetic study of the reactions of N-chlorosuccinimide (NCS) with glycine (Gly), sarcosine (Sar), 2-methylalanine (2MA), proline (Pro) and pyrrolidine (Pyr) was carried out. The reactions were found to be first order with respect to both NCS and the amine or amino acid and order -1 in proton concentration. In order to calculate the experimental activation parameters, the effect of temperature on the reaction rates was studied. The ionic strength and buffer concentration were found to have no effect on the rate constant. A reaction mechanism involving Cl+ transfer from NCS to the amine or amino acid to form an N-chloro compound is proposed © 1997 John Wiley & Sons, Ltd.
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  • 119
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    Journal of Physical Organic Chemistry 10 (1997), S. 577-584 
    ISSN: 0894-3230
    Keywords: carbenium ions ; reduction ; NAD(P)H analogues ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Hydride transfer mechanisms of the reductions of xanthylium ion by NAD(P)H analogues (i.e. BNAH, HEH and AcrH2) were investigated. Both the kinetic observations and an analysis of thermodynamic driving forces for each mechanistic step in all the possible mechanisms indicate that the reductions are initiated by a rate-determining electron transfer, followed by a fast hydrogen atom abstraction. The mechanism of the reductions of 9-phenylxanthylium and triphenylmethylium ions by BNAH were also investigated and are similarly discussed. © 1997 John Wiley & Sons, Ltd.
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  • 120
    ISSN: 0894-3230
    Keywords: peroxyoxalate reaction intermediate ; chemiluminescent decomposition ; kinetics ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The peroxyoxalate system undergoes one of the most efficient chemiluminescence reactions and is the only one considered to involve an intermolecular chemically initiated electron exchange luminescence mechanism, with proven high efficiency. Several reactive intermediates have been proposed, which, upon interaction with a fluorescent activator, lead to excited-state generation. The synthesis and spectral characterization of 4-chlorophenyl O,O-hydrogen monoperoxyoxalate (1), a compound analogous to one of the proposed reactive intermediates, was recently reported. Here the results of a kinetic study on the chemiluminescent decomposition of this peracid 1, catalyzed by oxygen bases (potassium hydroxide, potassium tert-butoxide and potassium p-chlorophenolate) or nitrogen bases [pyridine, imidazole and 1,8-bis(dimethylamino)naphthalene] are presented. Based on the dependence of the observed rate constants on the base concentration, kinetic schemes are proposed for the catalyzed decomposition of 1 and rate constants are assigned to specific reaction steps. The results obtained with the nitrogen bases give further support in favor of 1,2-dioxetane dione as the reactive intermediate in the peroxyoxalate reaction. © 1997 John Wiley & Sons, Ltd.
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  • 121
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    Journal of Physical Organic Chemistry 10 (1997), S. 637-645 
    ISSN: 0894-3230
    Keywords: 3-nitropyrazole ; structure ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---The molecular and crystal structure of 3-nitropyrazole was determined by X-ray analysis. The triclinic unit cell contains 12 molecules which form four hydrogen-bonded (N - H···N) trimers. Each trimer comprises of pseudo-ring in a flattened envelope distorted towards a chair conformation. The crystal packing consists of layers formed by centrosymmetric related trimers joined through C - H···O interactions. Ab initio calculations were performed on 3(5)-nitro- and 4-nitropyrazole and their corresponding protonated forms up to the MP2/6-31G** level of theory. The origin of the difference in aqueous basicities between both nitropyrazoles is discussed. © 1997 John Wiley & Sons, Ltd.
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  • 122
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    Journal of Physical Organic Chemistry 11 (1998), S. 763-773 
    ISSN: 0894-3230
    Keywords: 1-azabicycl[1.1.0]butyl cations ; 3-azetidinyl cations ; aziridinylmethyl cations ; ab initio ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Solvolysis products of 3-azetidinyl chlorides, tosylates, and mesylates have been interpreted previously to indicate that these reactions proceed by azabicyclo[1.1.0]butyl cationic intermediates. Whether these cations are formed by direct ionization to 3-azetidinyl cations followed by collapse to the bicyclic ion or are formed with anchimeric assistance by the lone pair of electrons on nitrogen is unclear. This investigation was initiated to assess the relative stability of these bicyclic cations and their isomeric 3-azetidinyl and aziridinylmethyl cations. All ab initio methods investigated suggest that the bicyclic ions (1) are much more stable than the corresponding 3-azetidinyl cations (3) and that transition states for conversion of the bicyclic ions to azetidinyl carbocations are not acheivable from the bicyclic ions. Hartree-Fock ab initio calculations on N-methyl (and N,2-dimethyl) bicyclic ions and their isomeric aziridinylmethyl cations (2) indicate that the bicyclic ions are significantly more stable than are the isomeric partially ring-opened cations, and that transition states (4) for conversion of the bicyclic ions to the corresponding aziridinylmethyl carbocations are probably energetically unattainable. Hartree-Fock theory predicts that the N-methyl-2-phenylbicyclic ions are slightly less stable than the resulting aziridinylmethyl cations. Calculations which include electron correlation (MP2) indicate, however, that all bicyclic ions investigated are more stable than any of their isomeric carbocations. © 1998 John Wiley & Sons, Ltd.
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    Journal of Physical Organic Chemistry 11 (1998), S. 787-792 
    ISSN: 0894-3230
    Keywords: nucleophilic aromatic substitution ; Meisenheimer complexes ; nucleophilic reactivity ; trinitro-aromatics ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Kinetic and equilibrium results are reported for the reactions of sulphite with the ethyl and phenyl ethers of 2,4,6-trinitrophenol and 2,4,6-trinitrothiophenol in 80/20 (v/v) water/DMSO. In each case 1:1 and 1:2 adducts are observed by reaction of sulphite at one or two unsubstituted ring positions respectively. In the case of the ethyl derivatives these adducts are long-lived however, the phenyl derivatives rapidly yield 2,4,6-trinitrobenzenesulphonate, the substitution product. This difference is attributed to a change in the nature of the rate-determining step, from nucleophilic attack with the phenyl derivatives to leaving group departure with the alkyl derivatives. © 1998 John Wiley & Sons, Ltd.
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  • 124
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    Journal of Physical Organic Chemistry 11 (1998), S. 793-802 
    ISSN: 0894-3230
    Keywords: aldolase ; slow-binding inhibition ; enzyme affinity ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Compounds similar in structure to reactants, intermediates and products of the aldolase-catalysed reaction were synthesized and their affinities for the enzyme determined. The best situations were found with β-dicarbonyl phosphorylated compounds which are a good mimics of the incoming groups in the bond-forming process; the corresponding binding is characterized by slow-binding inhibition type, the inhibitors forming stabilized iminium ions and enamines with the enzyme; similar effects were obtained with an aromatic aldehyde, also capable of forming a stabilized iminium ion. The use of aldolase mutants allows one to characterize the lysyl group involved in the process and also to suggest a proton transfer mechanism for the iminium ion formation with the enzyme natural substrate. © 1998 John Wiley & Sons, Ltd.
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  • 125
    ISSN: 0894-3230
    Keywords: 1,2,5-thiadiazole ; 1,1-dioxide derivatives ; single-crystal x-ray diffraction ; ab initio MO calculations ; structure ; conformation ; reactivity ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Single-crystal x-ray diffraction studies are reported for 3,4-dimethyl (I), 3-methyl-4-phenyl (II) and 3,4-diphenyl (III) derivatives of 1,2,5-thiadiazole 1,1-dioxide. Ab initio MO calculations on the electronic structure, conformation and reactivity of I, II and III are also reported and compared with the x-ray results. The structural data are related to previous kinetic and electrochemical experimental results on these compounds. © 1998 John Wiley & Sons, Ltd.
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  • 126
    ISSN: 0894-3230
    Keywords: 4-formyl-, methyl- and -vinylcyclohexene ; stereodynamics ; conformation ; dynamic NMR ; molecular mechanics ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The 1H and 13C{1H} NMR spectra of 4-formylcyclohexene in 50% CF2Cl2-50% CHF2Cl decoalesce at very low temperatures and, at 108 K, have sharpened into a major (77%) and a minor (23%) subspectrum. Based on the NMR spectra and molecular mechanics calculations, the major subspectrum is assigned to a family of equatorial conformations and the minor subspectrum to a family of axial conformations. The free energy of activation for conversion of the equatorial conformations to the axial forms is 5.6 kcal mol-1 (1 kcal  =  4.184 kJ) at 117 K. Within a family of conformations, interconversion occurs rapidly at 108 K via formyl group rotation. The conformational preference in 4-formylcyclohexene is solvent dependent. In 50% CF2Cl2-50% CHF2Cl, CHF2Cl and CF2Cl2, the respective ratios of equatorial to axial conformations are 77:23, 77:23, and 89:11 at 108 K. The 1H and 13C{1H} NMR spectra of 4-methylcyclohexene and 4-vinylcyclohexene in 50% CF2Cl2-50% CHF2Cl show no evidence of decoalescence at very low temperatures but do show differential broadening and subsequent sharpening of various resonances characteristic of exchange between strongly dominant equatorial conformations and axial conformations present at too low a concentration to be detectable by NMR. A lower limit on the free energy preference for the equatorial conformations is estimated to be 1.0 kcal mol-1. Molecular mechanics calculations also predict a stronger preference for equatorial conformations in 4-methylcyclohexene and 4-vinylcyclohexene than in 4-formylcyclohexene. © 1998 John Wiley & Sons, Ltd.
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  • 127
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    Journal of Physical Organic Chemistry 11 (1998), S. 299-304 
    ISSN: 0894-3230
    Keywords: molecular architecture ; molecule-based magnets ; biopolymers ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Application of the principles of physical organic chemistry to the construction of molecule-based magnets is discussed. Not only the magnetic structures of conventional magnets but also secondary and tertiary structures of biopolymers are instrumental in the molecular design. © 1998 John Wiley & Sons, Ltd.
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  • 128
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    Journal of Physical Organic Chemistry 11 (1998), S. 350-355 
    ISSN: 0894-3230
    Keywords: 1,3-dipoles ; cumulenes ; infrared spectroscopy ; mass spectrometry ; flash vacuum thermolysis ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: In the direct investigation of reactive intermediates it is particularly valuable to use a combination of several spectroscopic techniques. This commentary highlights recent examples, using primarily flash vacuum thermolysis for the generation of the intermediates, and matrix IR spectroscopy in conjunction with gas-phase mass spectrometric methods for their identification. The examples include nitrile imines, nitrile ylides, nitrile sulfides and selenides, dinitrogen sulfide and several novel cumulenes (X=C=C=Y, RN=C=C=C=X). © 1998 John Wiley & Sons, Ltd.
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  • 129
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    Journal of Physical Organic Chemistry 11 (1998), S. 871-878 
    ISSN: 0894-3230
    Keywords: laticyclic hyperconjugation ; isodrin ; solvolysis ; through-bond and through-space interactions ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Enhanced rates of solvolysis have been reported for some isodrin derivatives, e.g. compounds 2, 3, 6 and 7 compared with anti-7-norbornene (1). The effect has been ascribed to the formation of laticyclic (2 + 2 + 0) π-delocalization on a carbocation such as 5. However, comparable rates of solvolysis were also observed for analogous monoenes 4, 8, 9 and 12, where no adequate explanation has been provided. Molecular modeling at both semiempirical and ab initio levels shows a good correlation between the stabilization energy of the cations and their kinetic data. The enhanced rate of solvolysis for 4, 8, 9 and 12 can be rationalized by strong effects of σ-bond participation in the transition state. For both series of compounds, the stabilization effect can be effectively transmitted either through space or through bonds. Copyright © 1998 John Wiley & Sons, Ltd.
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  • 130
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    Journal of Physical Organic Chemistry 10 (1997), S. 669-674 
    ISSN: 0894-3230
    Keywords: azoles ; diiodine complexes ; basicity ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---The diiodine basicity (a soft Lewis basicity) of 15 azoles (imidazoles, pyrazoles and triazoles) was measured by means of the formation constant of the diiodine-azole complexes in heptane at 298 K. The preferred sites of diiodine fixation are the nitrogens N-3 in imidazoles, N-2 in pyrazoles and N-4 in 1,2,4-triazoles. The diiodine basicity decreases with (i) the number of ring nitrogens, (ii) benzofusion, (iii) field electron-withdrawing effects of substituents on N-1 and (iv) for pyrazoles only, steric effect of substituents on N-1. In imidazoles and 1,2,4-triazoles, the lengthening and branching of alkyl groups on N-1 increase significantly the basicity, and 1-(adamant-1-yl)imidazole is the most basic of the azoles studied. © 1997 John Wiley & Sons, Ltd.
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  • 131
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    Journal of Physical Organic Chemistry 10 (1997), S. 755-767 
    ISSN: 0894-3230
    Keywords: substitution ; singlet-triplet gaps ; carbenes ; vinylidenes ; density functional calculations ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---NDensity functional theory calculations of multiplet splittings are presented that agree closely with experimental measurements for six carbenes and six vinylidenes. The calculations are further analyzed to gauge the relative importance of different factors influencing the stabilities of the different spin and electronic states. In the carbene series, with halogen substituents, orbital rehybridization effects and charge redistribution effects are large. The magnitude of π-conjugation (back-bonding) is calculated to be only moderately larger (6-8 kcal mol-1) for singlets than for triplets based on natural bond orbital-derived conjugation energies. In the vinylidene series, substituion effects are primarily associated with through-space and through-bond inductive stabilization effects, especially hyperconjugation; π-conjugation effects are found to be small © 1997 John Wiley & Sons, Ltd.
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  • 132
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    Journal of Physical Organic Chemistry 10 (1997), S. 768-776 
    ISSN: 0894-3230
    Keywords: Diels-Alder addition ; butadiene ; thiocarbonyl oxides ; heterodienophiles ; heterocumulene ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---Diels-Alder reactions of various thiocarbonyl S-oxides and thiocarbonyl S,S-dioxides with buta-1,3-diene were studied by semiempirical AM1 and PM3 methods. Calculations show that the reactions of such unsymmetrical heterodienophiles pass through asynchronous transition states (TSs) with C=S π* involved in the reaction. Calculated activation energies indicate that the reactivity of these heterodienophiles, viz. R2C=S, R2C=SO and R2C=SO2, decrease gradually with successive addition of oxygen atoms to the thiocarbonyl sulfur. This is in good agreement with the experimental observations. The predictions based on LUMO and deformation energies show that the above reactivity trend corresponds to a gradual destabilization of LUMO of the dienophile and increase in deformation energy of both diene and dienophile with increase in the number of oxygen atoms around sulfur. Thiophosgene and their S-oxides in Diels-Alder reactions are found to be less reactive than the parent analogues. Monosubstituted (Z/E)-sulfines react with buta-1,3-diene to form cis and trans products through closely lying TSs. Calculations predict that (E)-sulfine has a higher reactivity than the Z-isomer, in reasonable agreement with experimental results. © 1997 John Wiley & Sons, Ltd.
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  • 133
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    Journal of Physical Organic Chemistry 11 (1998), S. 597-601 
    ISSN: 0894-3230
    Keywords: rhodium(II)-catalyzed nitrene transfer ; phenyliodonium ylides ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The [Rh2(OAc)4]-catalyzed decomposition of NsN=IPh {[N-(p-nitrobenzenesulfonyl)imino]phenyliodinane} affords aziridines in the presence of olefins and insertion products with compounds having activated CH bonds. The aziridination is stereospecific, and the insertion proceeds with retention of configuration. With chiral Rh(II) complexes, enantioenriched products result. A one-step mechanism involving a metal-complexed nitrene is proposed for both reactions. © 1998 John Wiley & Sons, Ltd.
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  • 134
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    Journal of Physical Organic Chemistry 11 (1998), S. 632-641 
    ISSN: 0894-3230
    Keywords: proton transfer reactions ; rate prediction ; equilibrium constants ; distortion energies ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A simple model for the energy surface of a reacting system permits the calculation of the free energies of activation. A chemical reaction is analyzed in terms of the simple processes (bond making/breaking or atom transfer; geometry changes) which must take place to achieve the overall transformation. When only one (or two, or three, …) of these processes has progressed to the full extent required for reaction, one has a ‘corner intermediate.’ The reaction diagram is viewed as a square (2D) or cube (3D) or hypercube (4D), etc., and energies at intermediate points on the energy surface or hypersurface are calculated by interpolation. Suitable equations have been obtained for this purpose. Along any section parallel to an axis the energy is given by an upward opening parabola centered at the lower energy end. This paper deals with the application of these ideas to proton transfer reactions involving carbon acids. For mono- or dicarbonyl compounds, with pKas ranging from 7 to 25.6, and rate constants for water or hydroxide ranging from 10-9.3 to 104.6, rate constants can be predicted with an r.m.s. error in log k of 0.99 for 51 reactions. © 1998 John Wiley & Sons, Ltd.
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  • 135
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    Journal of Physical Organic Chemistry 11 (1998), S. 540-545 
    ISSN: 0894-3230
    Keywords: metallodendrimers ; molecularly thin films ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A non-covalent synthesis route to assemble metallodendrimers was extended to the fifth generation. Generation four (G4) was characterized by electrospray mass spectrometry. Thin films of generation five (G5) metallodendrimers were studied by tapping mode scanning force microscopy. Both on graphite and on mica spherical particles with a diameter of ca 15 nm were observed. © 1998 John Wiley & Sons, Ltd.
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  • 136
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    Journal of Physical Organic Chemistry 11 (1998), S. 536-539 
    ISSN: 0894-3230
    Keywords: enzyme design ; enzyme mechanism ; genetic engineering ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Aspartate aminotransferase (AATase) and aminocyclopropane carboxylate synthase (ACC synthase) are pyridoxal phosphate (PLP)-dependent enzymes whose common junction of mechanistic divergence is after the formation of a Cα carbanion from the amino acid substrate bound to PLP as a Schiff base (aldimine). AATase catalyzes the reversible interconversion of α-amino acids and α-keto acids, while ACC synthase effects the irreversible decomposition of S-adenosylmethionine (SAM) to 1-aminocyclopropane-1-carboxylate (ACC) and 5′-methylthioadenosine (MTA). ACC is subsequently converted to ethylene, the plant ripening and senescence hormone, by ACC oxidase, the next enzyme in the pathway. AATase and ACC synthase exhibit many similar phenomenological characteristics that result from different detailed mechanistic origins. The kcat/KM versus pH profiles for both enzymes are similar (AATase, acidic pKa = 6.9, basic pKa = 9.6; ACC synthase, acidic pKa = 7.5, basic pKa = 8.9); however the acidic pKa of AATase reflects the ionization of an enzyme proton from the internal Schiff base, and the basic one is that of the α-amino group of the substrate, while the opposite situation obtains for ACC synthase, i.e. the apparent pKa of 7.4 is due to the α-amino group of SAM, whereas that of 9 reflects the Schiff base pKa. The mechanistic imperative underlying this reversal is dictated by the reaction mechanism and the low pKa of the α-amino group of SAM. The low pKa of SAM requires that the enzyme pKa be moved upward in order to have sufficient quantities of the reacting species at neutral pH. It is shown by viscosity variation experiments with wild-type and active site mutant controls of both enzymes that the reaction of SAM with ACC synthase is 100% diffusion controlled (kcat/KM = 1.2 × 106 l mol-1 s-1) while the corresponding reaction for the combination of L-aspartate with AATase is insensitive to viscosity, and is therefore chemically not diffusion limited. Tyr225 (AATase) or Tyr233 (ACC synthase) forms a hydrogen bond with the PLP in both enzymes, but that formed with the former enzyme is stronger and accounts for the lower pKa of the Schiff base. © 1998 John Wiley & Sons, Ltd.
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  • 137
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    Journal of Physical Organic Chemistry 11 (1998), S. 655-662 
    ISSN: 0894-3230
    Keywords: pericyclic reaction transition structures ; aromaticity ; magnetic susceptibility ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The transition states of thermally allowed pericyclic reactions are aromatic. They not only have highly delocalized structures and large resonance stabilizations (energies of concert), but also strongly enhanced magnetic susceptibilities (Λ) and appreciable NICS (nucleus-independent chemical shifts) values arising from the diatropic ring currents. Aromaticity is the consequence of cyclic electron delocalization, which can have σ and hybrid, and not just π character. © 1998 John Wiley & Sons, Ltd.
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  • 138
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    Journal of Physical Organic Chemistry 11 (1998), S. 589-596 
    ISSN: 0894-3230
    Keywords: intermediates ; spectroscopy ; polymers ; hydrogenation ; supercritical fluids ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: IR spectroscopy has transformed the study of mechanistic organometallic chemistry. Reaction intermediates can now be detected and characterized; their kinetics can be measured and their behaviour understood. However, the field is not static. New techniques are still being developed. We focus here on hydrogenation and related reactions describing (i) a miniature low-temperature/high-pressure cell, which allows photochemical reactions to be studied under high pressures of gases, (ii) the use of flow reactors for continuous reactions in supercritical fluids, including hydrogenation of organic compounds, and (iii) the use of supercritical fluid solutions for studying weak metal-ligand interactions by nanosecond time-resolved IR spectroscopy (TRIR) and the application of TRIR to the detection of intermediates in organic reactions. © 1998 John Wiley & Sons, Ltd.
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    Journal of Physical Organic Chemistry 11 (1998), S. 505-507 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
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    Journal of Physical Organic Chemistry 11 (1998), S. 377-377 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
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  • 141
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    Journal of Physical Organic Chemistry 11 (1998), S. 419-425 
    ISSN: 0894-3230
    Keywords: 5-nitro-5′-dimethylamino-2,2′-bisthiophene ; π* probe dye ; cyclic voltammetry ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Cyclic voltamograms of the solvatochromic dye 5-nitro-5′-dimethylamino-2,2′-bisthiophene (1), introduced recently as a sensitive π* probe, were recorded in different solvents. An EPR spectrum of the anionic radical of 1 in DMSO was obtained and compared with other spectra of analogous substituted bisthiophene radicals. It was found that the presence of a donor- acceptor pair of substituents in 1-⋅ reduces significantly the rotational barrier of the radical compared with the unsubstituted bithienyl radical anion 2-⋅. This is the result of an electronic repulsion between the donor ring fragment and the added electron in the coplanar radical, which does not exist in 2-⋅. © 1998 John Wiley & Sons, Ltd.
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  • 142
    ISSN: 0894-3230
    Keywords: iminoxyl radicals ; spectra ; kinetics ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---A series of new iminoxyl radicals, Et3C(C=NO·)Bu-tert (1), tert-C5H11(C=NO·) Bu-tert (2), (tert-C5H11)2C=NO· (3), Et3C(C=NO·)Ph (4), PhCH2CMe2(C=NO·)Bu-tert (5), PhCMe2(C=NO·)Bu-tert (6) and Me2CH(C=NO·)C5H11-tert (7), was characterized by EPR and in some cases visible spectra and decay kinetics in solution. Isolation of 1H and 3-tert-butyl-4,4-diethyl-5-methyl-4,5-dihydro-5-isoxazolol (9) among the decomposition products of 1 was consistent with a previously unrecognized mode of iminoxyl reaction in which the initial step is an internal β-H abstraction. Molecular orbital calculations on H2C=NO· indicate a C-N-O angle of about 140° and a 10 kcal mol-1 barrier to inversion. Rate constants for the reaction of tert-Bu2C=NO· (8) with a series of olefins were measured. © 1997 John Wiley & Sons, Ltd.
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  • 143
    ISSN: 0894-3230
    Keywords: calixarene sulphonates ; amino acids ; proteins ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The interactions of calixarene sulphonates with the basic amino acids arginine and lysine were studied by 1H NMR spectroscopy. Strong electrostatic binding occurs for calix[4]arene sulphonate with both lysine and arginine at pH 1 and 5. For the higher calixarenes, only weak interactions at the faces of the flattened macrocycles occur. This binding is in contrast to the inhibition of protein-protein interactions by the calixarenes where the calix[6]arene and calix[8]arene sulphonates show much stronger effects. © 1998 John Wiley & Sons, Ltd.
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    Journal of Physical Organic Chemistry 11 (1998), S. 715-721 
    ISSN: 0894-3230
    Keywords: unsaturated nitriles ; homolytic reactions ; cyclization ; tert-butylmercury halides ; proton donors ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Cyclizations are observed in the homolytic reactions of t-BuHgI with CH2=CHCH2YCH2CN [Y = CH2, O, CMe2, C(CO2Et)2, NCH2CN] and CH2=CHCH2CH2YCH2CN [Y = CH2, O, C(CO2Et)2] in Me2SO in the presence of hydriodic acid. Only with Y = C(CO2Et)2 does the adduct radical, t-BuCH2ĊHCH2YCH2CN, undergo facile 5-exo cyclization in the absence of a proton donor. The other 5-exo and all 6-exo cyclizations require substrate protonation to yield t-BuCH2ĊH(CH2)nYCH2C≡NH+ (n = 1, 2), which cyclizes readily to the iminium radical cation followed by electron transfer with I- or t-BuHgI2- to form the imine as a precursor to the cyclopentanone or cyclohexanone upon hydrolysis. For CH2=CHCH2C(CO2Et)2CH2CN the formation of the cyclopentanone is dramatically promoted by NH4I in the dark in the absence of any other acid. In this case, where cyclization of the adduct radical occurs readily without substrate activation, protonation of the cyclized iminyl radical allows the electron transfer with I- or t-BuHgI2- to occur with regeneration of t-Buċ. A similar effect is observed with CH2=CHCH2C(CO2Et)2CH2N3 where only a slow reaction is observed upon photolysis with t-BuHgI in the absence of NH4I, although apparently cyclization of t-BuCH2ĊHCH2C(CO2Et)2CH2N3 (with loss of N2) occurs readily. In the presence of NH4I the cyclized aminyl radical can be protonated and the resulting amine radical cation readily reduced by I- or t-BuHgI2- to continue a chain process. With the thioesters CH2=CHCH2YCH2C(O)SPh [Y = O, CH2, CMe2, C(CO2Et)2], significant cyclization upon photolysis with t-BuHgX occurred only for Y = C(CO2Et)2. © 1998 John Wiley & Sons, Ltd.
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    Journal of Physical Organic Chemistry 11 (1998), S. 895-902 
    ISSN: 0894-3230
    Keywords: 1-amino-2,4-dinitrobenzenes ; structures ; single-crystal x-ray diffraction ; UV-visible spectrophotometry ; NMR spectroscopy ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The crystal structures of 1-pyrrolidino-2,4-dinitrobenzene (3) and 1-morpholino-2,4-dinitrobenzene (4) were determined by single-crystal x-ray diffraction and the structures in solution were investigated by UV-visible spectrophotometry and 13C and 1H NMR spectrosccopy. Compound 4 crystallizes in the monoclinic space group P21/n with one independent molecule per asymmetric unit and 3 crystallizes in triclinic P-1 with three independent molecules per asymmetric unit. Rotation of the o-nitro group and of the amino group out of the aromatic plane was observed in both the solid state and in solution for both compounds. Copyright © 1998 John Wiley & Sons, Ltd.
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  • 146
    ISSN: 0894-3230
    Keywords: cryptand ; fluorescence titration ; lanthanide coordination ; proton transfer ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Lanthanide [lanthanum(III), 2; europium(III), 3; and gadolinium(III), 4] cryptates of a tris-phenylphenol N8O3 Schiff-base cryptand (H3L) were synthesized by transmetallation with [Na(H3L)]ClO4·3H2O (1) and characterized by spectroscopic and crystal structure analyses. Both 3 and 4 are isomophous and isostructural. The complexes crystallize in the triclinic space group P-1 with cell parameters for 3 of a = 14.9833(2), b = 15.42670(10), c = 16.3770(3) Å, α = 75.3760(10), β = 68.2640(10), γ = 77.0540(10)° and Z = 2 and for 4 of a = 14.9976(3), b = 15.4417(3), c = 16.35350(10) Å, α = 75.4980(10), β = 68.3180(10), γ = 76.8790(10)° and Z = 2. The structures reveal that one lanthanide ion is unsymmetrically encapsulated in the cryptand cavity with a second ligand (solvent DMF). Solution NMR and solid structural studies demonstrated that there are intracavity and intermolecular proton transfer processes during lanthanide complexation towards the cryptand. A fluorimetric titration in acetonitrile for Eu(III) ion to 1 afforded a novel fluorescence intensity (IF)-equivalents of Eu(III) ion (x) plot signaling a quenching (0 〈 x 〈 0.2)-enhancement (0.2 〈 x 〈 1) change with formation of the kinetically stable 1:1 cryptate. An energy-transfer mechanism is discussed. Copyright © 1998 John Wiley & Sons, Ltd.
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  • 147
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    Journal of Physical Organic Chemistry 11 (1998), S. 857-870 
    ISSN: 0894-3230
    Keywords: Yukawa-Tsuno equation ; substituent effect ; α-hydroxybenzylic cation ; benzoyl compound ; ab initio calculation ; basicity ; proton affinity ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Structures of α-hydroxybenzylic cations and their conjugate bases, which cover a wide variation of stability, were optimized by means of ab initio molecular orbital method at the RHF/6-31G* level. Total energies were calculated at the MP2/6-31G*//RHF/6-31G* + ZPE (scaled 0.9) level. Calculated relative proton affinities of the respective neutral molecules (benzoyl compounds; conjugate bases of α-hydroxybenzylic cations) agreed well with the corresponding basicities in the gas phase. The geometries of α-amino-α-hydroxybenzyl and α-hydroxy-α-dimethylaminobenzyl cations were also optimized at the fixed dihedral angles between the cationic 2pπ orbital and the benzene π orbital (φ), and between the cationic 2pπ orbital and lone pair electron orbital of the α-substituent (θ). The changes in Wiberg bond orders and the rotational potentials about φ and θ showed that the degree of resonance interaction between the cationic center and phenyl ring is balanced by the electronic effects of α-substituents in benzylic cations. The obtained theoretical indices of all parent cations such as Mulliken population, Wiberg bond order and bond lengths were correlated linearly with the resonance demand parameter (r value) which were given by the Yukawa-Tsuno substituent effect analysis in the gas phase and in aqueous solution. These relationships are consistent with those for other benzylic cations such as destabilized carbocations and sterically hindered cations studied previously. This confirms that the empirical r value has a definitive physical meaning, i.e. a measure of the resonance interaction between the cationic center and the aryl moiety. Copyright © 1998 John Wiley & Sons, Ltd.
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  • 148
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    Journal of Physical Organic Chemistry 9 (1996), S. 583-587 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: 3-Chloro-2,2-dimethylpropan-1-ol was pyrolysed in a static system at 410·0-459·1 °C and 62-179 Torr. The reaction, in a seasoned vessel and in the presence of the free radical suppressor propene, is homogeneous, unimolecular, and follows a first-order rate law. The rate coefficient follows the Arrhenius equation: log k1 (s-1) = (13·14±0·15) - (218·8 ± 2.1) kJ mol-1 (2·303RT)-1. The products are isobutene, formaldehyde and HCl gas. The exclusive intramolecular migration of the CH2OH group to the positively charged carbon atom, from the C(SINGLE BOND)Cl bond polarisation, appears to proceed by way of an intimate ion-pair type of mechanism. The intermediate 3-methylbut-3-en-1-ol, under the reaction conditions, undergoes a six-centered decomposition characteristic of β-hydroxyalkenes to produce isobutene, formaldehyde and HCl. The pyrolysis of the deuterated substrate, 3-chloro-2,2-dimethylpropan-1-[2H]ol, serves to support the mechanistic consideration assumed above.
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  • 149
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
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    Topics: Chemistry and Pharmacology , Physics
    Notes: Geometries of secondary and tertiary benzylic cations, which have bulky substituents at α positions, were optimized by ab initio MO calculations at the RHF/6-31G* and, in part, MP2/6-31G* levels. Calculated øcalc, which is the dihedral angle of the α-C (SINGLE BOND) C bond with respect to the aromatic plane, is compared with the relative resonance demand r/rmax obtained from solvolysis reactivity and also cation stability; r and rmax are the resonance demand in the Yukawa(SINGLE BOND)Tsuno equation for any given system examined and the corresponding ideal full-resonance stabilized demand, respectively. The results suggest that there is a close relationship between the experimental and calculated relative resonance demands expressed by r/rmax = cos2 øcalc, which is suggested by HMO theory for the resonance interaction in the benzyl cation. Thus the r value is a good parameter indicating the degree of resonance interaction between benzylic 2p π-orbital and the benzene π-system.
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  • 150
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: To probe regioselectivity in Meisenheimer complexation, the reaction of two picryl halides (PiX where X = F, Cl) with a series of aryloxide nucleophiles (phenoxide, 2,4,6-trimethylphenoxide and 2,6-di-t-butylphenoxide) were monitored by 1H NMR spectroscopy in dimethyl sulphoxide at ambient temperature and in acetonitrile-dimethoxyethane(MeCN-DME) at low temperature (-40°C). The reactions of both picryl halides with the ambident (oxygen versus carbon) nucleophile, phenoxide ion (PhO-), and 2,4,6-trimethylphenoxide (mesitoxide, MesO-) leads to clean SNAr displacement of X via the oxygen site of the nucleophile to form the respective aryl picryl ethers, i.e. phenyl picryl ether (3a) and mesityl picryl ether (3b). Meisenheimer complex formation at C-1 or C-3 was not detected in these systems. With 2,-6-di-t-butylphenoxide (2,6-DTBPhO-), where oxygen attachment of the aryloxide is precluded by the bulky ortho t-butyl groups, para-carbon attachment was found to occur at C-1 to give picryl 2,6-di-t-butylphenol (3d) in competition with C-attack at C-3 to give the respective carbon-bonded Meisenheimer complexes [X = Cl (4) and X = F (5)]. For both picryl halides, the ratio of 3d, the product of C-1 attack, to the product of C-3 attack, 4 or 5, was roughly 7:1. These findings are considered with regard to the nucleofugality of the halide, X, steric hindrance (F-strain) to attack by the aryloxides at the various positions and stereoelectronic stabilization of C-1 adducts afforded by n → σ* donation.
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  • 151
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    Journal of Physical Organic Chemistry 9 (1996) 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
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  • 152
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    Journal of Physical Organic Chemistry 9 (1996), S. 593-597 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A study of the acid-base behaviour of the three isomeric pyridinecarboxylic acids (picolinic, nicotinic and isonicotinic acid) was carried out using spectrophotometric and potentiometric measurements. The cationic form of picolinic acid converts partially into the corresponding zwitterion (pK1) within a borderline acidity range where neither the pH scale nor the acidity functions work satisfactorily. Protonation of the carboxyl groups (pK33) occurred at the highest acidity levels employed. The medium effects observed on the spectral curves were corrected by factor analysis. The potentiometric measurements gave values for pK1 and pK2 only, which were in good agreement with those determined spectrophotometrically.
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  • 153
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The crystal structure at 200 K of the complex formed by the optically active host (R,R)-(-)-trans-4,5-bis(hydroxydiphenylmethyl)-2,2-dimethyl-1,3-dioxolane (2) and 4-nitro-5-methylpyrazole (1b) and toluene as guests was determined by x-ray analysis. Although only the NH protons corresponding to tautomer 1b were found in the structure, some anomalies in the bond angles involving the nitrogen atoms of the pyrazole ring suggested the presence of about 25% of a structure containing the 3-methyl-4-nitropyrazole tautomer (1a). This hypothesis was confirmed by 13C cross polarization magic angle spinning NMR spectroscopy.
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  • 154
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    Journal of Physical Organic Chemistry 9 (1996), S. 619-622 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Photolysis of (dimethylphenylsilyl)(trimethylsilyl)diazomethane in t-BuOH yielded three different t-BuO-substituted (silylalkyl)silanes. The migratory aptitude of substituents from the silicon atoms to the carbenic center was found to be in the order Ph: Me (on phenyl-substituted Si):Me (on TMS) = 3·8:1·0:1·0, the opposite of that reported for monosilylcarbenes. The photolysis of (1-phenyl-1-silacyclobutyl)(trimethylsilyl) diazomethane gave two silyl-substituted silacyclobutanes and one ring-expanded silacyclopentane. Again, the migratory aptitude of substituents was in the order Ph: ring-methylene: Me = 4·5:1·4:1·0, showing that the ring shifts faster than Me and also Ph shifts faster than any alkyl substituent.
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  • 155
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    Journal of Physical Organic Chemistry 9 (1996), S. 598-610 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Biphenyl-2-ylcarbenes, 2-ArC6H4CR, were generated photolytically and thermally from diazo precursors. Cyclization, leading to fluorenes, competes with capture of the carbenes by methanol but proceeds faster than intramolecular hydrogen shifts (with R = Me) and intermolecular C(SINGLE BOND)H insertion reactions (with R = H in cyclohexane). By comparison of product ratios with kinetic data for related carbenes from the literature, the cyclization rate is estimated as ca 1011s-1. The intramolecular reactivity of biphenyl-2-ylcarbenes is not significantly attenuated by variation of R (R = H, Me, Ph). Very minor effects of triplet sensitization and methanol quenching indicate that fluorenes arise from spin-equilibrated biphenyl-2-ylcarbenes, presumably from the singlet state. When Ar = mesityl, the carbene predominantly inserts into C(SINGLE BOND)H bonds of the 2′-methyl groups, giving rise to a dihydrophenanthrene. Formation of a fluorene derivative, by formal insertion into C(SINGLE BOND)C bonds, occurs as a minor process. This unprecedented reaction points to intervention of an o-xylylene in which the methyl group migrates. Laser flash photolysis (LFP) of 2-PhC6H4CN2Ph generates a transient absorption which is due to the T0 → Tn transition of 9-phenylfluorene rather than to the presumed o-xylylene. On LFP of 2-ArC6H4CN2Ph in trifluoroethanol-acetonitrile, protonation of the carbenes gives rise to carbocations, 2-ArC6H4CH+Ph. The transient absorption spectra of these cations are strongly influenced by twisting about the Ar(SINGLE BOND)Ar bond (Ar = Ph 〈 o-tolyl 〈 mesityl) whereas the rates of nucleophilic capture vary only slightly. Biphenyl-2-ylcarbenium ions (Ar = R = Ph) cyclize more slowly than the analogous carbenes, by a factor of ≥104.
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  • 156
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    Journal of Physical Organic Chemistry 9 (1996), S. 781-786 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: 13C and 15N NMR data are reported for two substituted nitronaphthalenes 1,8-bis(4-toluenesulphonamido)-2,4,7-trinitronaphthalene and 1,8-bis(4-toluenesulphonamido)-2,4,5,7-tetranitronaphthalene and their salts with 1,8-dimethylaminonaphthalene. The salts are shown to contain NHN+ and NHN- intramolecular hydrogen-bonded systems in CD3CN solutions, in agreement with x-ray diffraction data on solid samples and 1H NMR studies on solutions. Examples are given of both a symmetrical and an unsymmetrical bonding system for the NHN atoms. 15N NMR is shown to be particularly helpful in these studies, both 15N shielding and 1J(15N, 1H) couplings are of value. Additional assistance is obtained from 3J(13C9, N1H) data. © 1996 John Wiley & Sons, Ltd.
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  • 157
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    Journal of Physical Organic Chemistry 10 (1997), S. 27-32 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: 1,3-Dihydro-1-oxido-3-methyl-1,2,3-benziodoxaphosphole 3-oxide (4) and 1-H-1-oxido-5-methyl-1,2,3-benziodoxathiole 3,3-dioxide (5) were used to cleave p-nitrophenyl diphenyl phosphate (PNPDPP) (2) in aqueous micellar cetyltrimethylammonium chloride (CTACI) in phosphate buffer at pH 8. The maximum pseudo-first-order cleavage rate constants (with 1·0×10-4 M 4 or 5 and 1·0×10-5 M 2) were 0·0016 s-1 for 4 ([CTAC1]=0·01 M) and 0·0013 s-1 for 5 ([CTAC1]=0·001 M). Reagents 4 and 5 were, respectively, 44 and 57 times less reactive toward PNPDPP than iodosobenzoate (1) under comparable conditions. Ab initio electronic structure calculations were carried out on 1, 4 and 5 and their protonated forms. Calculated structural parameters were compared with crystallographic data where possible. The computed atomic net charge on the oxido oxygens of 1, 4 and 5 was found to track the reactivity toward PNPDPP. © 1997 John Wiley & Sons, Ltd.
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  • 158
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    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The 13C chemical shifts of eight series of para- or meta-substituted benzaldehyde 2-aminobenzoylhydrazones possessing both amide and imine functionalities were measured. The 13C chemical shifts were used to study the transmission of electronic substituent effects along the heteroaromatic side-chain of the substituted aromatic ring. In addition to the C=N bond, the benzoylhydrazones possess in their side-chain polarizable C=O and phenyl π-units. The benzylidenic ring-substituent chemical shifts were analysed by the dual substituent parameter approach to separate the inductive and resonance effects. The negative ρI and ρR values observed (i.e. reverse substituent effects) indicate a significant π-polarization of the C=N bond. The highly negative ρR values, especially those in the case of meta substitution, suggest a contribution from a marked secondary field-transmitted resonance effect. The results are compared with those obtained for other hydrazones or imines. Variation of the electron-withdrawing ability of the N2 substituent is seen to have a systematic effect on the ρI values. Reverse substituent effects are also observed at the C-1″ site of the 2-aminobenzoyl ring while C-4″ shifts show normal behaviour, consistent with the general concept of the π-polarization that each π-unit of the side-chain is polarized largely as a localized system. Accordingly, the π-polarization effect is seen efficiently to propagate also along a heteroaromatic chain. On the other hand, the C=O sites exhibit normal, although fairly slight, dependence on the benzylidenic substituent indicating an insignificant role of π-polarization at that site. The effects of the solvent, CDCl3 vs. DMSO-d6, on the ρI and ρR values are also considered. © 1997 John Wiley & Sons, Ltd.
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  • 159
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    Journal of Physical Organic Chemistry 9 (1996), S. 66-78 
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    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Ab initio calculations at both the Hartree-Fock and Møller-Plesset (MP2) levels of theory utilizing various basis sets were carried out on propargyl alcohol and its derivatives. The results of these calculations were used in conjunction with available experimental data in the formulation of an MM3 force field for these compounds. The energetic data obtained via the ab initio calculations were modeled well within the MM3 formalism, and are in agreement with the experimental results to within 1 kcal mol-1. For those structural parameters which were the focus of this study, the calculated results agreed well with existing experimental and ab initio data. The vibrational frequencies are also in good agreement with only small deviations in a few modes of methyl propargyl ether and propargyl fluoride.
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  • 160
    ISSN: 0894-3230
    Keywords: 2-(2′-methoxy-3′-α-cumylphenyl)benzotriazole ; conformational preference ; light stabilizers ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---A pronounced conformational preference of the 3′-α-cumyl substituent in 2-(2′-methoxy-3′-α-cumylphenyl)benzotriazole is suggested from the results of molecular dynamics simulations. This suggestion is supported by both solution NMR spectral and solid-state x-ray crystallographic data. The orientation of the α-cumyl substituent may have implications on the relative performance of 3′-substituted 2′-hydroxyphenylbenzotriazole light stabilizers in polar media. © 1997 by John Wiley & Sons, Ltd.
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  • 161
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    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
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    Topics: Chemistry and Pharmacology , Physics
    Notes: This paper reports a theoretical approach based on ab initio calculations for the evaluation of intrinsic reaction constants of resonance, field/inductive and polarizability effects of compounds subject to protonation. Field/inductive and polarizability constants can be evaluated from direct relationships between δΔEp and intrinsic contributions of the substituent. On the other hand, resonance constants should be estimated from relationships between the proton charge in the protonated molecular form and the intrinsic contributions of the substituent. It is also shown that during a protonation process the change in π charge of the carbon atom that is to bear the substituent should be the most suitable index for determining the π-electron demand of the structure concerned.
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  • 162
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    Journal of Physical Organic Chemistry 9 (1996), S. 105-110 
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    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The oxidation of several monosubstituted phenoxyacetic acids by pyridinium hydrobromide perbromide (PHPB) was studied in aqueous acetic acid. The reaction is first order with respect to PHPB. Michaelis-Menten-type kinetics are observed with respect to phenoxyacetic acids. The oxidation of [2,2-2H2]phenoxyacetic acid exhibits a substantial kinetic isotopic effect. The effect of solvent composition indicates that the transition state is more polar than the reactants. The formation constants of the intermediate phenoxyacetic acid-PHPB complexes and the rates of their decomposition were determined at different temperatures. The rates of oxidation of para- and meta-substituted phenoxyacetic acids were correlated with Hammett's substituent constants. The ρ value is -2·59 at 35°C. The rates of oxidation of ortho-substituted compounds are correlated with Charton's triparametric equation. A mechanism involving transfer of a hydride ion from the substrate to the oxidant is proposed.
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  • 163
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    Journal of Physical Organic Chemistry 9 (1996), S. 119-127 
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    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The conformational space of the 2-cyano-1,1-dihydroxyethane molecule was studied at the semi-empirical PM3 level and ab initio MP2/6-31G**//6-31G level in the gas phase and in a low-polarity medium. This system has been chosen as a model compound for 2-cyanocyclohexanone propylene and ethylene acetals. This has allowed the study of the role of polar groups on the relative conformation of two adjacent OH groups, which is of interest also in relation to the anomeric effect in carbohydrate chemistry. Solvent effects are taken into account using a continuum model with general cavity shapes.
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  • 164
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    Journal of Physical Organic Chemistry 9 (1996), S. 111-118 
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    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A spectrofluorimetric titration analysis of the proton dissociation and the interactions of human serum transferrin with hydrogencarbonate was performed at pH 7·0-9·0. Apotransferrin loses a single proton probably per binding site with Ka = (6·80 ± 0·35) × 10-9 M. This proton dissociation is independent of the hydrogencarbonate concentration. Apotransferrin does not interact with CO32-. However, it interacts with two HCO3-, exhibiting two different affinity constants; the dissociation constant presumably for the C-site is KC = (4·40 ± 0·15) × 10-3 M and that for presumably the N-site is KN = (3·60 ± 0·30) × 10-2 M. These interactions are independent of pH and occur with the unprotonated and protonated apotransferrin species with the same low affinities. Such affinities are probably induced by ionic interactions involving the side chain of the arginine residues in each of the two binding sites. As for the proton dissociation, it can occur with one of the other side-chains of the amino acid residues of these binding sites.
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  • 165
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    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
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    Topics: Chemistry and Pharmacology , Physics
    Notes: A series of 23 bridgehead-substituted bicyclo[1.1.1]pentanes were synthesized and the 3J(C1-H) coupling constants determined from their proton-coupled 13C NMR spectra. It was found that the values of the couplings are strongly dependent upon the type of substituent present, with powerful effects exerted by the halogens in particular. The IPPP-CLOPPA-INDO theoretical approach, which was employed to provide a measure of the extent of through-bond versus through-space transmission of coupling information, was found to give 3J(C1-H) values in good agreement with experimental data. Empirical substituent parameter regressions were performed and found to be consistent with the CLOPPA description of the increase in both the through-bond and through-space contributions to the coupling. The substituent parameter regressional analyses also demonstrated that electronegativity effects play a predominant role in determining the magnitude of the couplings, particularly in those substrates in which the substituent is attached to the ring system by a second-row element.
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  • 166
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    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The molecular and crystal structures of two crystalline forms of hexa(pyrazol-1-yl)benzene were determined by x-ray analysis. They correspond to two conformational polymorphs: form I is obtained in acetic acid and form II in ethanol or dichloromethane. The crystal packing of both conformers is different; however, that of form I is analogous to that of hexa(3,5-dimethylpyrazol-1-yl)benzene, having similar cell dimensions and space groups R-3. No significant interactions except the van der Waals interactions were observed. Semiempirical calculations at the AM1 and SAM1 levels, exploring all possible conformations of the pyrazole rings, reveal that the most stable conformation presents the pyrazole rings with the N(2) alternating between both sides of the phenyl plane as it occurs in the solid state, crystalline form I (conformation 8h). The computed minimum energy for conformer 7a, which is related to crystal form II, presents a different sequence of pyrazole arrangements [N(2) up or down] and is only 1·6-2·0 kcal mol-1 less stable than the previous one in both parametrizations. The SAM1 method yields pyrazole moieties more perpendicular to the benzene ring than the AM1 one.
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  • 167
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    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A theoretical study on the structures and internal rotations of methyl N,N-dimethylcarbamate and its sulphur, selenium and tellurium homologues [Me2NC(O)YMe, 1 (Y = O), 2 (Y = S), 3 (Y = Se), 4 (Y = Te)] was performed by means of ab initio molecular orbital calculations at the MP2/3-21G(*)//HF/3-21G(*) level. These calculations indicate that 1-4 are all planar with Z-conformation with respect to the central bonds of their O(DOUBLE BOND)C(SINGLE BOND)Y(SINGLE BOND)Me units, whereas the corresponding E-forms are transition states for rotation about Y(SINGLE BOND)C(O) bonds which have energies higher than the E-forms by 20·6, 15·4, 13·9, and 9·6 kcal mol-1, respectively. The energy of 1 increases monotonically from the Z-form to the E-form with rotation about the Y(SINGLE BOND)C(O) bond, but in 2-4 a transition state and a local minimum were found between the two forms. This different phenomenon for 1 compared with its homologues 2-4 arise mainly from the large steric repulsion between a methyl group on the nitrogen and that on the oxygen in E-1. Optimization of the transition states (TSa and TSs) for rotation about N(SINGLE BOND)C(O) bonds showed that TSa is favoured by 2-4 but disfavoured by 1 owing to the repulsion between lone pairs on the nitrogen and oxygen atoms in its TSa. The barriers for rotation about N(SINGLE BOND)C(O) bonds were estimated to be 16·1, 14·7, 14·7, and 15·7 kcal mol-1 for 1,2,3,4, respectively.
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  • 168
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    Journal of Physical Organic Chemistry 9 (1996) 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
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  • 169
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Reactions of morpholine in dimethyl sulphoxide at unsubstituted ring positions of 1,3,5-trinitrobenzene, and phenyl 2,4,6-trinitrophenyl ether, yield anionic σ-adducts via zwitterionic intermediates. Reactions at the 1-position of phenyl 2,4,6-trinitrophenyl ether, phenyl 2,4-dinitronaphthyl ether, and phenyl 2,4-dinitrophenyl ether result in substitution of the phenoxy groups. In both these reaction types proton-transfer is rate-limiting. Comparison of kinetic and equilibrium data with those for corresponding reactions of piperidine shows that rate constants for proton transfer are similar for the two amines, but equilibrium constants for zwitterion formation have lower values for morpholine, the less basic amine. Implications for base catalysis are discussed.
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  • 170
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    Journal of Physical Organic Chemistry 10 (1997), S. 196-206 
    ISSN: 0894-3230
    Keywords: ethane-1,1-diol ; ethane-1,1,2-triol ; conformation ; ab initio study ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---Ab initio optimizations at the HF/6-31G level and single-point calculations at the MP2/6-31G**//6-31G level were performed on ethane-1,1-diol and ethane-1,1,2-triol. Their conformational properties are discussed in terms of the anomeric effect, gauche effect and internal O-H interactions. The results showed a parallel behaviour with ethane-1,2-diol. The solvent effect was taken into account using the SCRF theory with a general cavity shape which is defined by the molecular surface. © 1997 John Wiley & Sons, Ltd.
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  • 171
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    Journal of Physical Organic Chemistry 10 (1997), S. 233-241 
    ISSN: 0894-3230
    Keywords: surface effects ; radical anions ; benzoyl radical ; coupling of radicals ; surface catalysis ; electron transfer ; reactions in the double laye ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Benzaldehyde in THF reacts with lithium metal to give the expected reduction product, benzyl alcohol, plus benzoin and benzyl as minor products. The kinetics of the overall reaction as well as the partial rate coefficients of the several steps have been determined under various reaction conditions. It was found that adsorption on the surface and electron transfer from the lithium to benzaldehyde are the slow steps. The experimental results show interesting surface effects, and evidence for significant radical intermediates, which were characterized by their epr spectra and trapping experiments, results useful to gain insight into the mechanisms of these and other related reactions. © 1997 John Wiley & Sons, Ltd.
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  • 172
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    Journal of Physical Organic Chemistry 10 (1997), S. 292-304 
    ISSN: 0894-3230
    Keywords: calixarenes ; bipyridine ; lanthanides ; luminescence ; preorganization ; solvent effect ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---Based on MD simulations, the structures of Eu3+ and EuCl3 complexes of bipyridine-substituted calixarenes in different environments (in vacuo and in acetonitrile and water solutions) were modelled. The data account for the differences in their luminescence properties. The role of the calixarene platform, preorganization of the ligands, and an explicit account of counterions in different environments are analysed. © 1997 John Wiley & Sons, Ltd.
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  • 173
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    Keywords: aryliminodimagnesium ; condensation with NO2 and CO groups ; addition to CN group ; single electron transfer efficiency ; σ-complexation ability ; inter- and intramolecular competition ; bifunctional substrates ; positional effect of functional groups ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---The reactions of aryliminodimagnesium [ArN(MgBr)2, IDMg] with p′-substituted p-cyanobenzophenones, 1-cyano-9-fluorenone, o-, m- and p-dicyanobenzenes and o-, m- and p-nitrobenzonitriles were examined, and the relative yields of products were referred to the previous results of electron spin resonance studies. The products of condensation with carbonyl and nitro groups and of addition to cyano groups were formed. From the variations of the yields caused by the molar ratio of the magnesium reagent versus substrates and by the substituents of both reactants, the preferred groups were determined. The groups of p- and m-substrates are consistent with the position of highest density of free electrons in the anion radicals, whereas those of the o-substrates are inconsistent. The consistency indicates competition of functional groups reflecting the relative ability of single electron acceptance from the reagent, whereas the inconsistency is ascribed to cooperation of neighbouring groups for σ-complexation with the Mg atom of the reagent. The categories of competition and cooperation are discussed in relation to fundamental features and general governing factors proposed for the IDMg reactions of monofunctional substrates. © 1997 John Wiley & Sons, Ltd.
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  • 174
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    Journal of Physical Organic Chemistry 10 (1997), S. 305-310 
    ISSN: 0894-3230
    Keywords: non-covalent interactions ; host-guest complexes ; fluorinated phenyl compounds ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Complexation constants with the macrocyclic azoniacyclophane CP44 and phenyl guest compounds with at least four fluorine atoms or alternatively protons at the ring were obtained by NMR shift titrations in water. The fluorinated compounds show free energies of complexation which are smaller by ΔΔG=3·4-7·7 kJ mol-1 in comparison with the protonated compounds. The NMR shifts induced upon 100% complexation (CIS values) were obtained simultaneously from non-linear least-squares fitting and indicate intra-cavity inclusion in all cases. The CIS values agree roughly with screening constants calculated from aromatic ring current and linear electric field effects, the latter resulting from the permanent charges at the host compound. Molecular mechanics calculations (CHARMm) indicate that intracavity inclusion is possible with all compounds with negligible strain induced (〈1 kJ mol-1) in the macrocycle upon complexation. In contrast, α-cyclodextrin can accommodate fluorinated phenyl compounds only at the rim of the cavity without larger strain. Preliminary data with α-cyclodextrin, obtained by competitive UV-visible titration with methyl orange, indicate again a smaller association free energy (ΔΔG=1·-7 kJ mol-1) for pentafluorphenol compared with normal phenol as guest. © 1997 John Wiley & Sons, Ltd.
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  • 175
    ISSN: 0894-3230
    Keywords: hydrophobic cavity characterization ; cyclophanes ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The guest-binding behavior of two different cyclophane hosts, each being capable of providing a three-dimensionally extended hydrophobic cavity toward aromatic guests, was examined in aqueous media: a steroid cyclophane bearing four rigid cholate moieties and an octopus cyclophane having four flexible double-chain segments. Even though the binding constant for 2,7-dihydroxynaphthalene with the steroid cyclophane was comparable to that with the octopus cyclophane, the guest binding modes were very different from each other, as confirmed by 1H NMR spectroscopy. That is, the steroid cyclophane incorporates the guest into its rigid macrocyclic cavity with axial geometry whereas the octopus cyclophane provides a three-dimensional space created by the macrocyclic skeleton and the flexible hydrocarbon chains so that the long axis of the guest becomes more or less perpendicular to the molecular axis of the host upon complexation. Temperature-dependent molecular recognition by these hosts toward 8-anilinonaphthalene-1-sulfonate was examined by means of fluorescence spectroscopy. Characteristic differences in the guest-binding mode between these hosts were sensitively reflected in the thermodynamic entropy change on host-guest complexation and the temperature-dependent microscopic viscosity experienced by the guest at the binding site. © 1997 John Wiley & Sons, Ltd.
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  • 176
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    Journal of Physical Organic Chemistry 10 (1997), S. 254-272 
    ISSN: 0894-3230
    Keywords: π-π interactions ; self-assembly ; catenanes ; cyclophanes ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The recent surge of interest in the control of molecular organization in both the solution state (i.e. self-assembly) and the solid state (i.e. crystal engineering) has led researchers to recognize increasingly the importance of weak non-covalent interactions. The design and synthesis of an efficient molecular construction set are dependent upon a very close interplay between x-ray crystallography and synthetic chemistry. π-π Stacking interactions between π-donors, such as hydroquinone, resorcinol or dioxynaphthalene residues, and π-accepting ring systems, such as bipyridinium or π-extended viologen units, can govern the self-assembly of a variety of complexes and interlocked molecular compounds in both the solid and solution states. Non-covalent bonding interactions (i.e. π-π interactions) can be considered as information vectors: they define and rule the self-assembly processes that lead to the formation of the desired molecular and supramolecular architectures, and thereafter they still govern the dynamic processes occurring within the self-assembled structures and superstructures. The manner in which such molecules and supermolecules can contribute to an understanding of non-covalent interactions at both structural and superstructural levels is described, with reference to numerous examples of self-assembly processes in synthesis, of dynamic processes in the solution state, and of the packing of molecules and molecular complexes in the solid state. © 1997 John Wiley & Sons, Ltd.
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  • 177
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    Journal of Physical Organic Chemistry 10 (1997), S. 323-334 
    ISSN: 0894-3230
    Keywords: redox-switched amphiphiles ; ferrocene derivatives ; vesicles ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---Thirty ferrocene derivatives were prepared and their ability to form vesicles in aqueous solution when oxidized was assessed. The compounds included alkyl ferrocenylmethyl ether derivatives of the form C10H9FeCH2OR in which R=octyl, dodecyl, tetradecyl, hexadecyl, octadecyl and eicosanyl. One single-tailed amine derivative, C10H9FeCH2NR2, R=octadecyl, was studied. Alkylferrocene derivatives had the form C10H9FeR in which R=butyl, decyl, tetradecyl, hexadecyl, octadecyl, eicosanyl and docosanyl. Sixteen symmetrical 1,1′-disubstituted ferrocenes were also studied. Three ethers were of the form C10H8Fe-1,1′-(CH2OR),2, R=tetradecyl, hexadecyl and octadecyl. Four corresponding dialkyl derivatives of the form C10H8Fe-1,1′-R2, R=decyl, tetradecyl, hexadecyl and octadecyl, were assessed. Finally, a range of 1,1′-disubstituted ferrocene derivatives were analyzed. These all had the form C10H8Fe-1,1′-(COR)2, for which R has the following identities: octyl, tridecyl, pentadecyl and heptadecyl (ketones); heptadecyloxy, 3-cholesteryl and 3-cholestanyl (esters); and two amides, R=NHC18H37 and N(C18H37)2. The alkyl and ether derivatives could be readily oxidized and formed vesicular aggregates upon sonication. The ketones, esters and amides could be oxidized but the ferricenium derivatives did not form stable aggregates. An interesting observation is that the aggregates formed were vesicular whether the ferrocene derivative had one or two alkyl tails. © 1997 John Wiley & Sons, Ltd.
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  • 178
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    Journal of Physical Organic Chemistry 10 (1997), S. 273-285 
    ISSN: 0894-3230
    Keywords: cation-π interactions ; calix[n]arenes ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Non-covalent intermolecular forces have been recognized as a very important part of molecular interactions in complex biological systems. The fundamental functions of living matter such as transcription of genetic information in DNA, spatial arrangement of protein molecules, enzymatic functions or immunity system response are enabled owing to the presence of weak non-covalent forces based on hydrogen bonding interactions, van der Waals interactions, electrostatic interactions, hydrophobic effects, etc. Recently, among them so-called "cation-π" interactions have been proved to contribute to the overall binding process in various artificial or biological systems. Calix[n]arenes have emerged as an important family of molecules with promising applications in many branches of chemistry. Because of their suitable molecular preorganization with aromatic units being "concentrated' in a relatively small space, calix[n]arenes represent interesting compounds exhibiting an enhanced ability for cation-π interactions. The importance of such forces in calix[n]arene chemistry is demonstrated here on several recent examples. © 1997 John Wiley & Sons, Ltd.
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  • 179
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    Journal of Physical Organic Chemistry 10 (1997), S. 335-342 
    ISSN: 0894-3230
    Keywords: hydrophobic interactions ; aqueous solutions ; living systems ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---Evidence is provided for the enormous role of hydrophobic interactions in aqueous solutions. It is concluded that complementary functions of hydrophilic and of hydrophobic species are in continuous operation and that these are a conditio sine qua non for the existence of the liquid. With regard to the supermolecular aggregations, hydrophobic interactions are operative on the highest hierarchic levels of the system organization, i.e. at the interface and at the holes around dissolved hydrophobic species. It is further emphasized that water is essential both for the unity and for the differentiation of each living organism. With regard to its role for the differentiation of the body, the hydrophobic interactions are of paramount importance, notably those provided by amphipathic solutes. The cell membrane is considered to be the result of interactions between the highest hierarchic levels of intracellular and extracellular water. The hydrophobic double layer provides the barriers for the separation of intracellular and extracellular water and at the same time the connections for recognition and for exchange of information between them. The DNA structures obtain conservative boundary conditions for their surrounding water systems which do not freeze at -60 °C. These water systems are dynamically superior to all other parts of the water system of the organism. It is suggested that more knowledge about the abilities of liquid water can be obtained by giving appropriate attention to its properties within the living body. © 1997 John Wiley & Sons, Ltd.
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  • 180
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    Journal of Physical Organic Chemistry 10 (1997), S. 514-524 
    ISSN: 0894-3230
    Keywords: eterocycles ; donor/acceptor units ; push-pull conjugated molecules ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---The synthesis and spectroscopic investigation of a number of push-pull ethenes in which the donor moiety is represented by a π-excessive five-membered heterocycle (pyrrole, indole and thiophene) and the acceptor group is a π-deficient heterocyclic azine ring (pyridine, pyrazine, pyrimidine, pyridazine) are described. The intramolecular charge transfer in both the neutral compounds and the corresponding N-alkylpyridinium triflates is discussed and confirmed on the basis of three different descriptors, ΔλHetPh,Δλ+n, and Δλsolv1solv2, that take into account the substitution of a phenyl with a heterocyclic donor ring, charge effects and solvatochromism, respectively. According to the ΔλHetPh descriptor, the intramolecular charge transfer in the described diheteroarylethenes increases upon increasing the electron-withdrawing capacity of the acceptor, sustained by the presence of either more than one nitrogen atom or the positive charge in the heterocyclic azine. The described pyridinium derivatives belong to the rarely investigated class of dimethine cyanine dyes. The response of the 13C and 15N NMR chemical shift data appears to be less clear because of the low sensitivity of the NMR probes to remote substitution. © 1997 John Wiley & Sons, Ltd.
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  • 181
    ISSN: 0894-3230
    Keywords: trianylmethanes ; 9-arylxanthenes ; ion and radical staleclitres ; amphihydric compounds ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---Thermodynamic stability properties of 11 p-substituted trityl and seven 9-phenylxanthyl carbocations are reported in sulfolane and of their conjugate carbanions in DMSO. The cations are compared by calorimetric heats of hydride transfer from cyanoborohydride ion, their first and second reduction potentials, their pKR+s in aqueous sulfuric acid, 13C chemical shifts and free energies of methoxy exchange. Carbanions are compared by their heats and free energies (pKHA) of deprotonation and their first and second oxidation potentials. Radicals are compared by their oxidation and reduction potentials. Their bond dissociation energies are derived by alternative routes: from the carbocation and its reduction potential and from the carbanion and its oxidation potential. The various properties are correlated against each other and against appropriate Hammett-type substituent parameters. Correlations between the different measured properties reported here range from fair to excellent. Despite their importance as historic prototypes for the three trivalent oxidation states of carbon, trityl and xanthyl systems are atypical models for comparing transmission of electron demand in other series of carbocations, radicals or carbanions with significantly different structures. The 9-arylxanthyl series is especially poor because of its insensitivity to substituent effects. The effects of substituents on various properties which represent the stabilities of R+s correlate surprisingly well against those for corresponding R-s. Accordingly, compensating effects on the oxidation and reduction of a series of related R·s may lead to a nearly constant electron transfer energy and absolute hardness for the series. In contrast, the free energies for interconversion of the carbocations and carbanions which determine the gap between pKR+ and pKHA are very sensitive to structural change. © 1997 John Wiley & Sons, Ltd.
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  • 182
    ISSN: 0894-3230
    Keywords: n-Butyllithium ; benzoic acid ; nucleophilic addition ; deprotonation ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---An evaluation of a branching vs sequential mechanism for the reaction of benzoic acid with n-butyllithium favors the latter. © 1997 John Wiley & Sons, Ltd.
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  • 183
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    Journal of Physical Organic Chemistry 10 (1997), S. 347-350 
    ISSN: 0894-3230
    Keywords: benzene · · · hexafluorobenzene ; supramolecular synthon ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The benzene · · · hexafluorobenzene stacking interaction was evaluated at several levels of theory. At the MP2/6-31G** level, it is estimated that the interaction is stabilizing by approximately 3.7 kcal mol-1. Lower levels of theory perform poorly on this system. This is a fairly strong non-covalent interaction, suggesting this motif may be a valuable supramolecular synthon. © 1997 John Wiley & Sons, Ltd.
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  • 184
    ISSN: 0894-3230
    Keywords: N-(aminoalkyl)-9-phenanthrenecarboxamides ; molecular structures ; folded conformations ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---The molecular structures of three tertiary N-(aminoalkyl)-9-phenanthrenecarboxamides were investigated in solution and the solid state by means of 1H NMR spectroscopy and x-ray crystallography. The tertiary amides exist as a mixture of E and Z isomers in solution and the aminoalkyl groups exist as a mixture extended and folded conformers. A crystalline N-(aminoethyl)amide was obtained as the pure Z isomer in which the phenanthrene and amide planes are nearly perpendicular and the aminoethyl group is folded over the less hindered face of the amide group. Rotation about the Ar-C(O) bond is slow in resolution rendering these molecules chiral on the NMR time-scale. As a consequence, the α-methylene protons display large diasterotopic splittings when the aminoalkyl group is syn to the amide carbonyl. Folded conformations place the Z and E aminoalkyl groups in the deshielding and shielding regions, respectively, of the phenanthrene rings, resulting in large differences in chemical shifts. © 1997 John Wiley & Sons, Ltd.
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  • 185
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    Journal of Physical Organic Chemistry 10 (1997), S. 563-576 
    ISSN: 0894-3230
    Keywords: free energies of solvation ; chloroform ; water ; linear response ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---Monte Carlo statistical mechanics simulations were used to compute absolute free energies of solvation in chloroform for 16 organic molecules. The intermolecular interactions were described by classical potential functions consisting of Coulomb and Lennard-Jones interactions. The partial charges for the solutes were derived from fitting to the electrostatic potential surfaces of ab initio 6-31G* wavefunctions. First, free energy perturbation (FEP) calculations yielded relative free energies of solvation. These were converted to absolute quantities through perturbations to the reference molecule, methane, which was annihilated. The average error in the FEP-computed free energies of solvation is 0·8 kcal mol-1. Then, a linear response equation, which contains terms proportional to the Lennard-Jones (van der Waals) and Coulombic components of the solute-solvent energy and to the solvent-accessible surface area of the solute, was optimized and reproduced both the FEP-calculated and experimental free energies of solvation with average errors of ca 0·5 kcal mol-1. In addition, an existing solute dataset for water, which had previously been fitted to the same equation, was expanded from 16 to 35 molecules. The fit of the Monte Carlo results for this set of molecules in TIP4P water to the experimental free energies of hydration yielded an average error of 0·8 kcal mol-1. Combination of the predictions of free energies of solvation in water and chloroform yields partition coefficients, log P, with an average error of 0·3-0·4 log unit. © 1997 John Wiley & Sons, Ltd.
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  • 186
    ISSN: 0894-3230
    Keywords: inclusion complexation ; cyclobis (paraquat-p-phenylene) ; cyclophanes ; substituted aromatics ; cooperative non-covalent cavity ; external interactions ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: ---The cooperative nature of non-covalent interactions which give rise to inclusion complexes involving cyclobis(paraquat-p-phenylene), 14+, and related cyclophane derivatives, 24+-44+, with substituted 1,4-phenyl and 4,4′-biphenyl guests has been studied by spectroscopic techniques and ab initio and semiempirical molecular orbital methods. Inclusion complex formation and stability are primarily determined by the combination of two main interaction modes involving aromatic stacking of the guest within the cyclophane cavity and external interactions between guest side arms and the exterior of the cyclophane. A balance between cavity and external forces results in supramolecular association and is shown to change depending upon the functionality and substitution of the guest. Cavity binding was probed using 1,4-phenyl and 4,4′-biphenyl guests, where for the 1,4-phenyl guests the primary basis for energy stabilization with 14+ is found to be short-range stabilizing electrostatic forces complemented by small amounts of polarizability and charge-transfer. In contrast, the cavity binding between substituted 4,4′-biphenyl guests and 14+ is determined by almost equal contributions of polarizability and electrostatics. The effect of solvent is shown to have only a small effect on the computed geometry of 14+ complexes, but its impact upon binding energies is substantial. The first solvation shell of the cyclophanes is computationally approximated by 12 acetonitriles and satisfies the requirements of the 16 relatively acidic protons on the bipyridinium groups. Good correlations between the computed (with solv ation) and experimental 14+ binding energies are found. The degree of linear correlation improves substantially when the comparison between computed and experimentally observed binding energies is restricted to structurally similar (number of aromatic rings, number of substituents and position of substitution) molecular guests. Furthermore, computed molecular properties, such as polarizability, maximum hardness, softness and electronegativity of the isolated guests, correlate well with 14+ binding energies based upon the same requirement of guest similarity. The non-covalent forces associated with the external cyclophane interactions were studied with guest molecules built from symmetrical 1,4-extensions of hydroquinone composed of aliphatic or ethyleneoxy side arms. In particular, side arm length and functionality, and the position and type of heteroatoms along the chain, were systematically varied to define the external interactions between the guest side arms and different host cyclophanes. Specifically, the ethyleneoxy linkages are shown to provide a large chelate and cooperative effect which direct the binding with 14+. In order to probe further the special geometric and electronic character of 14+, we have synthesized and tested a new supramolecular host, 24+, similar to 14+ but where a pentacycloundecane unit replaces one of the xylyl groups. Both experimental and computed data on the new host emphasize the ideal geometry and electronic nature of the 14+ molecular receptor for aromatic guests. The inclusion complexes discussed in this paper are important not only because they, or similar entities, are the main components of many rotaxanes, catenanes and other switchable molecules, but because the intermolecular interactions involved, such as electrostatics, polarizability and charge-transfer, are ubiquitous in supramolecular chemistry. The information reported on the specific interactions involving the 14+-44+ molecular receptors with substituted aromatic guests can also be extended by analogy to many systems of broad interest. © 1997 John Wiley & Sons, Ltd.
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  • 187
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    Journal of Physical Organic Chemistry 9 (1996), S. 348-354 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The molecular gas-phase elimination kinetics of the series (Cl(CH2)nCOOH (n = 1-4), show changes in mechanisms from polar five-centered intramolecular displacement of the Cl leaving group by the acidic hydrogen of the COOH to neighboring group participation of the oxygen carbonyl of the COOH group. The mechanisms for the series 2-, 3- and 4-chlorobutyric acids are explained similarly as above. The leaving chloride at the 2-position of acetic, propionic, and butyric acids is displaced by the hydrogen of the COOH group through a prevaling path of a five- centered cyclic transition-state mechanism. This type of mechanism is also described for the pyrolysis of 2-hydroxy-, 2-alkoxy-, 2-phenoxy-, and 2-acetoxycarboxylic acids. The ease with which the groups at the 2-position of acetic and propionic acids are displaced by the H of COOH give rise the sequences AcO 〉 OH 〉 PhO 〉 EtO 〉 MeO 〉 Cl and AcO 〉 PhO 〉 Br 〉 EtO 〉 MeO 〉 MeO 〉 OH 〉 Cl, respectively. These two sequences differ only in the OH leaving group position. Additional work on glycolic acid pyrolysis is needed to explain the above differences.
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  • 188
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The unimolecular decomposition of substituted N-chloro-α-glycine anions was examined by an ab initio method using the 6-31G* basis set to obtain an insight into the relationship between transition-state structure and reactivity. The complete potential energy surface was explored and the stationary points corresponding to reactant and transition structure were localized. A reaction analysis by correlation of bond orders revealed that the reaction mechanism corresponds to an asynchronous fragmentation. The transition structure for all the compounds has an antiperiplanar conformation between the C(SINGLE BOND)C and N(SINGLE BOND)Cl bond breaking and it has a product-like character. The influence of the substitution on the α-carbon and on the nitrogen is discussed. When the size and number of substituents on the α-carbon and to a lesser extent on the nitrogen atom increase the relative energy decreases. The size of the substituent produces perpendicular effects and the type and number of substituents give parallel effects.
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  • 189
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    Journal of Physical Organic Chemistry 9 (1996), S. 398-402 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The kinetics of complex formation between Pd(H2O)42+ and S-carboxymethyl-L-cysteine (SCMCH2) was investigated in the presence of sodium dodecyl sulphate in the acidity range between 2 M HClO4 and pH 5. Although the mechanism was not affected by the presence of anionic micelles, retardation (2·2 〈 pH 〈 5) and acceleration (pH 〈 2·2) of the complex formation were observed compared with its rate in aqueous solution. These effects were interpreted in terms of the long-range electrostatic interactions between the negatively charged micellar surface and ligand species which can be in different ionic forms depending on the pH.
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  • 190
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    Journal of Physical Organic Chemistry 9 (1996), S. 381-386 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Electrical currents trigger oxidation or reduction reactions in conducting polymers. Changes in volume associated with these redox processes can be transformed into macroscopic movements of more than 180° by the construction of a bilayer: polypyrrole-flexible and inactive polymer (artificial muscle). The effects of the applied potential, the nature of the solvent and the electrolyte concentration on the angular movement of the free end of the bilayer were analysed. The movement accelerates with increasing anodic (or cathodic, when the movement is reversed) overpotentials, with increasing electrolyte concentration or by using more polar solvents, leading to the conclusion that the movement is linked to electrochemically driven exchange of hydrated counterions between the solution and the conducting polymer. Geometrical considerations give a simple equation for both the microscopic and macroscopic changes of volume associated to the penetration of counterions during oxidation, which is able to explain the experimental behaviour.
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  • 191
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    Journal of Physical Organic Chemistry 9 (1996), S. 427-432 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Molecular volumes of 80 compounds (50 liquids and 30 solids), with densities in the range 0·6-3·0 g cm-3, were calculated by molecular mechanics. The densities derived from these molecular volumes (Vmol MM) by the approximation dMM = mol. wt/Vmol MMNA (NA = Avogadro's number) give two linear correlations (one for liquids and one for solids) when plotted versus experimental densities. Two general equations obtained from those relationships give a good precision (3% mean error) when tested in the calculation of the experimental densities of 183 compounds that have different structures and functional groups.
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  • 192
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The effect of temperature on the Dimroth-Reichardt ET(30) parameter of binary mixtures of dimethyl sulfoxide, acetonitrile and nitromethane with alcohols and water was studied. The ET(30) polarity parameter of many of these binary mixtures exhibits a strong synergism. Dimethyl sulfoxide, acetonitrile and nitromethane form hydrogen-bonded complexes with the alcohols more polar than themselves. The ET(30) values of the mixtures were fitted according to an earlier model, based on solvent exchange equilibria, that allows calculation of the ET(30) values of the hydrogen-bonded complexes. The variation of the ET(30) values of the pure solvents and the hydrogen-bonded complexed solvents with temperature shows that the synergism decreases as the temperature increases.
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  • 193
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    Journal of Physical Organic Chemistry 9 (1996), S. 436-438 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Carbon-bridged [1.1]ferrocenophanes have generally been assumed to have syn structures, since anti isomers have been considered to be too strained. The recent discovery that such compounds may crystallize as anti isomers raises the question of whether the compounds prefer anti or syn conformations in solution. The synthesis of β-acetyl-[1.1]ferrocenophane (1) and its investigation by 1H,1H-NOESY are reported. Compound 1 was found to be a rapidly equilibrating mixture of syn isomers in CDCl3 at 22 °C.
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  • 194
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    Journal of Physical Organic Chemistry 11 (1998), S. 1-9 
    ISSN: 0894-3230
    Keywords: benzothiazole-2-thiol ; formation mechanism ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The formation of benzothiazole-2-thiol from aniline, carbon disulphide and sulphur at 230°C was shown to occur by a sequence of three principal steps. Labelling experiments confirmed that both sulphur atoms originate from carbon disulphide. An initial polar reaction to form thiocarbanilide via phenylcarbamic acid and a tetrahedral intermediate is followed by radical cyclization of these to benzothiazole-2-thiol and 2-phenylaminobenzothiazole; the latter is converted into the desired product by a polar displacement of aniline by H2S. Mechanisms for the formation of minor byproducts are also considered. © 1998 John Wiley & Sons, Ltd.
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  • 195
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    Journal of Physical Organic Chemistry 9 (1996), S. 419-426 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The dynamics of the reaction of P+ with methane were studied by means of a combination of an approximate classical trajectory method and RRKM theory, using accurate ab initio computations of the relevant minima and saddle points of the lowest singlet and triplet potential energy surfaces. The results were compared with those of gas-phase experiments obtained at 300 K. Computed rate coefficients are given for a wide range of temperatures from 40 to 1000 K and may be useful in the modelling of interstellar chemistry, where the reaction of P+ with methane is believed to play a crucial role in the synthesis of small molecules containing a P(SINGLE BOND)C bond. The results appear to imply that an intersystem crossing process may play a key role in the reaction dynamics.
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  • 196
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    Journal of Physical Organic Chemistry 11 (1998), S. 223-229 
    ISSN: 0894-3230
    Keywords: Solvolysis ; Grunwald-Winstein-type analysis ; Hammett-type analysis ; YxBnCl scale ; 1-aryl-1-phenylmethyl cations ; Mulliken population analysis ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Rate constants of solvolysis of α-tert-butyl(2-naphthyl)methyl chloride (1), 9-fluorenyl chloride (2) and a series of monosubstituted benzhydryl chlorides (3) in a wide range of solvents were measured. Grunwald-Winstein-type correlation analysis of log k for 2 and 3 against YBnCl, with or without nucleophilicity N, yielded less satisfactory linear correlations than that against log k(1). A new scale of solvent ionizing power, YxBnCl, for the correlation of solvolytic reactivities of benzylic chlorides with extended charge delocalization based on log k(1) was developed. Application to the mechanistic study suggested the solvolysis of 2 and 4-nitrobenzhydryl chloride were non-limiting. Hammett plots against σ+ constants exhibited more negative ρ values in less nucleophilic solvents. In a benzhydryl chloride containing a strong deactivating substituent, such as 4-nitro, the positive charge delocalizes mainly over the unsubstituted ring in the cationic transition state. The uneven charge distribution was also confirmed by Mulliken population analysis at the level of the RHF/6-31G*//RHF/3-21G(*) basis set for cations. Comparison of the results of correlation analysis using the equation log(k/k0) = mY vs the equation log(k/k0) = mY+hI, and using the equation log(k/k0) = mY+lN vs the equation log(k/k0) = mY+lN+hI indicated the use of YBnCl or YxBnCl could give a better understanding of solvolytic mechanisms than the combinatorial use of YCl and I. © 1998 John Wiley & Sons, Ltd.
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  • 197
    ISSN: 0894-3230
    Keywords: Solvent-solute interactions ; β-carotene ; electronic absorption spectrum ; solvent effects ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: Solvent effects on the wavenumber of the maximum of the longest wavelength electronic absorption band of all-trans-β-carotene were determined in 34 solvents. Together with results from previous studies, a data set for 51 solvents, mostly non-hydrogen bond donors, was constructed. This information was analyzed in terms of reaction field models and also showed its value for correlation purposes when used either alone or in combination with standard empirical solvent polarity-polarizability scales. © 1998 John Wiley & Sons, Ltd.
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  • 198
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    Journal of Physical Organic Chemistry 11 (1998), S. 177-184 
    ISSN: 0894-3230
    Keywords: nitro derivatives of phenols ; pyrolysis initiation reactions ; impact sensitivity ; UHF-SCF-AM1 MO method ; activation energy. ; Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: The UHF-SCF-AM1 MO method was applied to the study of two kinds of pyrolysis reactions of six nitro derivatives of phenols (homolysis reaction by rupture of the C - NO2 bond into radicals and isomerization reaction involving phenolic hydrogen transferring to oxygen on the NO2 group). The molecular geometries of reactants, transition states and products were fully optimized. The potential energy curves and activation energies were first obtained. The results show that this category of compounds is more easily initiated via isomerization reactions than by homolysis reactions. The parallel relationship among the Wiberg bond order of the pyrolysis-initiation H - O bond in the molecule of a reactant, the activation energy of the isomerization reaction breaking the H - O bond and impact sensitivity of the reactant gives ‘the principle of the smallest bond order’ (PSBO) powerful support. The sensitizing effect of a phenol group was elucidated based on calculation results. The different influences of OH and NO2 groups on the heat of formation of a molecule are discussed. © 1998 John Wiley & Sons, Ltd.
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  • 199
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    Journal of Physical Organic Chemistry 9 (1996), S. 661-671 
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: In the addition reactions of aniline nucleophiles with a benzylic carbocation, isokinetic behavior is often observed: ρX(ρnuc) vanishes and the rate becomes constant irrespective of the substituent, X, in the nucleophile when α and Y substituents on the benzylic carbon and on the ring, respectively, are kept constant (σ^α and σ^Y). This means that there is a region (σY 〈 σ^Y) where thermodynamically more stable derivatives (δσX 〉 0) are kinetically more labile (δ log kXY 〉 0) so that ρX is positive, i.e. an inverse thermodynamic stability-reactivity relationship holds. The observable isokinetic point at σ^Y is rationalized by the compensation effect of the intrinsic barrier, ΔG0≠, and thermodynamic driving force, ΔG°, for the specified α and Y substituents. Moreover, the two substituents, α and Y, that satisfy the condition of vanishing ρX are found to be related in a compensating manner to preserve the condition of nearly complete cancellation between the two energy terms for the vanishing ρX. The cancellation of the two energy terms is made possible by an imbalance or non-synchronization of the expression of destabilizing polar and stabilizing resonance interactions in the transition state.
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  • 200
    ISSN: 0894-3230
    Keywords: Chemistry ; Theoretical, Physical and Computational Chemistry
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology , Physics
    Notes: A 1H NMR conformational study of cis- and trans-4-substituted cyclohexene oxides revealed an increased predominance, as compared with the parent 4-substituted cyclohexenes, of the equatorial conformer for cis-isomers and a preference of the axial conformer for trans-isomers. These conformational shifts can be rationalized in terms of intramolecular dipole-dipole and/or steric interactions. However, molecular mechanics calculations failed to reproduce the relative stability of the axial conformer in trans-4-substituted cyclohexene oxides.
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