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  • Chemistry  (10,169)
  • Inorganic Chemistry  (1,627)
  • Environment  (1,190)
  • Fluid Mechanics and Thermodynamics
  • 2020-2022  (2,050)
  • 1950-1954  (9,253)
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  • 1
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    In:  J.Oehlenschlaeger@gmx.net | http://aquaticcommons.org/id/eprint/11132 | 1240 | 2013-04-08 18:42:57 | 11132 | Johann Heinrich von Thünen-Institut, Bundesforschungsinstitut für Ländliche Räume, Wald und Fischerei
    Publication Date: 2021-06-28
    Description: KurzfassungZahlreiche Fischereierzeugnisse aus dem Deutschen Handel wurden auf ihren Gehalt an Cholesterol hin analysiert. ZurAnalyse gelangten 38 verschiedene Dauerkonserven von acht Fischarten, 4 Produkte kalt geräucherter AtlantischerZuchtlachs in Scheiben, 10 Garnelenarten und 25 Fischstäbchenerzeugnisse von 5 Tierarten in Verbraucherpackungen. Bei den Dauerkonserven lagen die Gehalte zwischen 24 und 40 mg/100 g. Zwei Ausnahmen bildeten Sprottenkonserven mit durchschnittlich 107 mg/100 g und Oktopuskonserven mit 196 mg/100 g. Die Garnelenarten variierten zwischen 84 und 161 mg/100g. Die kalt geräucherten Lachsscheiben wiesen nur eine kleine Bandbreite im Cholesterolgehalt zwischen 38 und 43mg/100 g auf. Alle Fischstäbchen aus Magerfischen enthielten niedrige Gehalte an Cholesterol (Pangasius hypophthalmus 25, Seehecht 19, Seelachs 31 und Alaska Seehecht 28 mg/100 g), während die zwei Proben aus Tintenfischen über 100 mg/100 g lagen.AbstractNumerous fishery products from the German market have been analysed for their content of cholesterol. In total 38 different canned fishery products produced from 8 species, 4 products of sliced cold smoked Atlantic salmon, 10 species of crustacean shellfish and 25 different brands of consumer packages of fish fingers (produced from 5 species) were investigated. Canned fishery products contained amounts of cholesterol ranging from 24 to 40 mg/100 g. However, canned sprats exhibit cholesterol content as high as 107 mg/100g and canned octopus 196 mg/100 g. Crustacean shellfish was found to contain cholesterol content between 84 and 161 mg/100 g depending of species. Sliced cold smoked salmon in 200 g consumer packages showed only a little variation in cholesterol content (38-43 mg/100 g). In all fish fingers produced from lean fish species lowcholesterol content (pangasius or sutchi catfish 25, hake 19, saithe 31, and Alaska Pollack 28 mg/100 g, respectively) was found, whereas two products produced from squid exceeded 100 mg/100 g.
    Description: Johann Heinrich von Thünen-Institute, Federal Research Institute of Rural Areas, Forestry and Fisheries began publishing the Informationen aus der Fischereiforschung - Information on Fishery Research in 2010
    Keywords: Chemistry ; Fisheries ; Information Management ; fish products ; consumer protection ; chemical analysis ; nutrition advice ; healthy nutrition
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 71-79
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  • 2
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    Environment Agency | Warrington, UK
    In:  dis@fba.org.uk | http://aquaticcommons.org/id/eprint/10619 | 1256 | 2013-03-29 14:19:49 | 10619 | Environment Agency, UK (Freshwater Biological Association)
    Publication Date: 2021-06-27
    Description: This is the report on the Additonal Crayfish Survey of Checkley Brook, Hollywood End Brook and Black Brook from 1999 by the Environment agency. The aim of the 1999 survey was to obtain a more complete picture of the crayfish distribution in those areas.It contains sections on the sampling methodology which followed the sampling done in 1998, the results of the sampling indicating the species of crayfish occurring in the sampling areas and some discussion and conclusions for each area. The appendix I contains maps locating the sampling points and past records. The appendix II contains detailed information of the sampling points.
    Description: Environment Agency Archives North West
    Description: + appendices
    Keywords: Ecology ; Environment ; Limnology ; England ; Checkley Brook ; Hollywood ; End Brook ; Black Brook ; Crayfish ; Survey ; Crayfish distribution ; Crayfish species ; Sampling
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 10
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  • 3
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    In:  hartmut.rehbein@mri.bund.de | http://aquaticcommons.org/id/eprint/11167 | 1240 | 2013-05-17 07:56:42 | 11167 | Johann Heinrich von Thünen-Institut, Bundesforschungsinstitut für Ländliche Räume, Wald und Fischerei
    Publication Date: 2021-06-28
    Description: To ensure the authentication of fishery products lacking biological characters, rapid species identification methods are required. Two DNA- and protein-based methods, PCR-SSCP (polymerase chain reaction - single strand conformation polymorphism) of a 464 bp segment of the cytochrome b – gene and isoelectric focusing (IEF) of water-soluble proteins from fish fillets, were applied to identify fillets of (sub-) tropical fish species available on the European market. Among the samples analysed weretwo taxonomically identified species from the family Sciaenidae and one from Sphyraenidae. By comparison of DNA- and protein patterns of different samples, information about intra-species variability of patterns,and homogeneity of batches (e.g. fillet blocks or bags) can be obtained. PCR-SSCP and IEF may be useful for pre-checking of a large number of samples by food control laboratories.ZusammenfassungZur Sicherstellung der Authentizität von Fischerei-Erzeugnissen ohne biologische Merkmale sind schnelle Verfahren zur Speziesidentifizierung hilfreich. Zwei Methoden der DNA- bzw. Protein-Analyse wurden eingesetzt, um Filets (sub-) tropischer Fischarten, die auf dem europäischen Markt angeboten werden, zu identifizieren. Bei diesen Methoden handelt es sich um die PCR-SSCP (Polymerase-Kettenreaktion – Einzelstrang-Konformationspolymorphismus) – Analyse der PCR-Produkte und die IEF (isoelektrische Fokussierung) der wasserlöslichen Fischmuskelproteine. Unter den untersuchten Proben waren zwei taxonomisch bestimmte Arten aus der Familie Sciaenidae und eine Spezies aus der Familie Sphyraenidae. Durch Vergleich der DNA- bzw. Proteinmuster lassen sich Informationen über die intra-spezifische Variabilität solcher Muster und die Einheitlichkeit von Partien (beispielsweise Filetblöcke oder Filetbeutel) gewinnen. PCR-SSCP und IEF könnenin Laboratorien der Lebensmittelüberwachung als Vortest gerade bei hohen Probenzahlen sinnvoll eingesetzt werden.
    Description: Johann Heinrich von Thünen-Institute, Federal Research Institute of Rural Areas, Forestry and Fisheries began publishing the Informationen aus der Fischereiforschung - Information on Fishery Research in 2010
    Keywords: Chemistry ; Fisheries ; fish species identification ; PCR ; SSCP ; IEF ; Sciaenidae ; Sphyraenidae ; Fischarten-Identifizierung
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 81-89
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  • 4
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    International Collective in Support of Fishworkers | Chennai, India
    In:  http://aquaticcommons.org/id/eprint/11292 | 6 | 2015-05-30 00:54:23 | 11292 | International Collective in Support of Fishworkers
    Publication Date: 2021-06-30
    Description: This handbook provides detailed information for a wide range of legal instruments relevant to fisheries and fishworkers. It covers 114 legal instruments, categorized into the following seven themes: Theme I. Human Rights, Food Security, Women and Development.Theme II. Environment and Sustainable Development.Theme III. Oceans and Fisheries Management.Theme IV. Environmental Pollution Theme V. Fishing Vessels and Safety at Sea Theme VI. Labour Theme VII. TradeThe handbook also includes the working of the instruments (decision-making bodies, monitoring and implementation agencies, periodicity of meetings, rules for participation in meetings of the decision-making bodies and implementation agencies for States and non-governmental organizations), regional instrument and agencies. Apart from being a ready reckoner to the instruments, it highlights the important sections of relevance to fisheries or small-scale fisheries and fishworkers.The companion CD-ROM provides the full texts of the instruments in a searchable database. The handbook will be useful for fishworker and non-governmental organizations, and also for researchers and others interested in fisheries issues.
    Description: Part of an 8 volume set. ISBN 81-902957-8-0 (Set) Principal Researchers: Ramya Rajagopalan and Ahana Lakshmi
    Keywords: Environment ; Fisheries ; Law
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 19
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  • 5
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    International Collective in Support of Fishworkers | Chennai, India
    In:  http://aquaticcommons.org/id/eprint/11297 | 6 | 2015-05-30 00:57:45 | 11297 | International Collective in Support of Fishworkers
    Publication Date: 2021-06-30
    Description: This handbook provides detailed information for a wide range of legal instruments relevant to fisheries and fishworkers. It covers 114 legal instruments, categorized into the following seven themes: Theme I. Human Rights, Food Security, Women and Development.Theme II. Environment and Sustainable Development.Theme III. Oceans and Fisheries Management.Theme IV. Environmental Pollution Theme V. Fishing Vessels and Safety at Sea Theme VI. Labour Theme VII. TradeThe handbook also includes the working of the instruments (decision-making bodies, monitoring and implementation agencies, periodicity of meetings, rules for participation in meetings of the decision-making bodies and implementation agencies for States and non-governmental organizations), regional instrument and agencies. Apart from being a ready reckoner to the instruments, it highlights the important sections of relevance to fisheries or small-scale fisheries and fishworkers.The companion CD-ROM provides the full texts of the instruments in a searchable database. The handbook will be useful for fishworker and non-governmental organizations, and also for researchers and others interested in fisheries issues.
    Description: Part of an 8 volume set. ISBN 81-902957-8-0 (Set) Principal Researchers: Ramya Rajagopalan and Ahana Lakshmi
    Keywords: Environment ; Fisheries ; Law
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 16
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  • 6
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    International Collective in Support of Fishworkers | Chennai, India
    In:  http://aquaticcommons.org/id/eprint/11295 | 6 | 2015-05-30 00:56:28 | 11295 | International Collective in Support of Fishworkers
    Publication Date: 2021-06-30
    Description: This handbook provides detailed information for a wide range of legal instruments relevant to fisheries and fishworkers. It covers 114 legal instruments, categorized into the following seven themes: Theme I. Human Rights, Food Security, Women and Development.Theme II. Environment and Sustainable Development.Theme III. Oceans and Fisheries Management.Theme IV. Environmental Pollution Theme V. Fishing Vessels and Safety at Sea Theme VI. Labour Theme VII. TradeThe handbook also includes the working of the instruments (decision-making bodies, monitoring and implementation agencies, periodicity of meetings, rules for participation in meetings of the decision-making bodies and implementation agencies for States and non-governmental organizations), regional instrument and agencies. Apart from being a ready reckoner to the instruments, it highlights the important sections of relevance to fisheries or small-scale fisheries and fishworkers.The companion CD-ROM provides the full texts of the instruments in a searchable database. The handbook will be useful for fishworker and non-governmental organizations, and also for researchers and others interested in fisheries issues.
    Description: Part of an 8 volume set. ISBN 81-902957-8-0 (Set) Principal Researchers: Ramya Rajagopalan and Ahana Lakshmi
    Keywords: Environment ; Fisheries ; Law
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 68
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  • 7
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    Bachand & Associates | Davis, CA
    In:  Philip.Bachand@tetratech.com | http://aquaticcommons.org/id/eprint/11287 | 393 | 2013-08-01 16:41:54 | 11287 | Bachand & Associates
    Publication Date: 2021-06-30
    Description: Two large hydrologic issues face the Kings Basin, severe and chronic overdraft of about 0.16M ac-ft annually, and flood risks along the Kings River and the downstream San Joaquin River. Since 1983, these floods have caused over $1B in damage in today’s dollars. Capturing flood flows of sufficient volume could help address these two pressing issues which are relevant to many regions of the Central Valley and will only be exacerbated with climate change. However, the Kings River has high variability associated with flow magnitudes which suggests that standard engineering approaches and acquisition of sufficient acreage through purchase and easements to capture and recharge flood waters would not be cost effective. An alternative approach investigated in this study, termed On-Farm Flood Flow Capture, involved leveraging large areas of private farmland to capture flood flows for both direct and in lieu recharge. This study investigated the technical and logistical feasibility of best management practices (BMPs) associated with On-Farm Flood Flow Capture. The investigation was conducted near Helm, CA, about 20 miles west of Fresno, CA. The experimental design identified a coordinated plan to determine infiltration rates for different soil series and different crops; develop a water budget for water applied throughout the program and estimate direct and in lieu recharge; provide a preliminary assessment of potential water quality impacts; assess logistical issues associated with implementation; and provide an economic summary of the program. At check locations, we measured average infiltration rates of 4.2 in/d for all fields and noted that infiltration rates decreased asymptotically over time to about 2 – 2.5 in/d. Rates did not differ significantly between the different crops and soils tested, but were found to be about an order of magnitude higher in one field. At a 2.5 in/d infiltration rate, 100 acres are required to infiltrate 10 CFS of captured flood flows. Water quality of applied flood flows from the Kings River had concentrations of COC (constituents of concern; i.e. nitrate, electrical conductivity or EC, phosphate, ammonium, total dissolved solids or TDS) one order of magnitude or more lower than for pumped groundwater at Terranova Ranch and similarly for a broader survey of regional groundwater. Applied flood flows flushed the root zone and upper vadose zone of nitrate and salts, leading to much lower EC and nitrate concentrations to a depth of 8 feet when compared to fields in which more limited flood flows were applied or for which drip irrigation with groundwater was the sole water source. In demonstrating this technology on the farm, approximately 3,100 ac-ft was diverted, primarily from April through mid-July, with about 70% towards in lieu and 30% towards direct recharge. Substantial flood flow volumes were applied to alfalfa, wine grapes and pistachio fields. A subset of those fields, primarily wine grapes and pistachios, were used primarily to demonstrate direct recharge. For those fields about 50 – 75% of water applied was calculated going to direct recharge. Data from the check studies suggests more flood flows could have been applied and infiltrated, effectively driving up the amount of water towards direct recharge. Costs to capture flood flows for in lieu and direct recharge for this project were low compared to recharge costs for other nearby systems and in comparison to irrigating with groundwater. Moreover, the potentially high flood capture capacity of this project suggests significant flood avoidance costs savings to downstream communities along the Kings and San Joaquin Rivers. Our analyses for Terranova Ranch suggest that allocating 25% or more flood flow water towards in lieu recharge and the rest toward direct recharge will result in an economically sustainable recharge approach paid through savings from reduced groundwater pumping. Two important issues need further consideration. First, these practices are likely to leach legacy salts and nitrates from the unsaturated zone into groundwater. We develop a conceptual model of EC movement through the unsaturated zone and estimated through mass balance calculations that approximately 10 kilograms per square meter of salts will be flushed into the groundwater through displacing 12 cubic meters per square meter of unsaturated zone pore water. This flux would increase groundwater salinity but an equivalent amount of water added subsequently is predicted as needed to return to current groundwater salinity levels. All subsequent flood flow capture and recharge is expected to further decrease groundwater salinity levels. Second, the project identified important farm-scale logistical issues including irrigator training; developing cropping plans to integrate farming and recharge activities; upgrading conveyance; and quantifying results. Regional logistical issues also exist related to conveyance, integration with agricultural management, economics, required acreage and Operation and Maintenance (O&M).
    Description: United States Department of Agriculture Natural Resources Conservation Service
    Description: Terranova Ranch
    Description: Bachand & Associates
    Description: Sustainable Conservation
    Description: University of California Davis
    Description: On-Farm Flood Flow Capture as a Cost Effective Method to Recharge Groundwater and Reduce Downstream Flood Risks; Conservation Innovation Grant (CIG) Agreement No. 68-9104-128
    Description: PDF includes 57 pages (front matter + 53 pp.)
    Keywords: Agriculture ; Engineering ; Environment ; Management ; flood flow ; recharge ; best management practices ; overdraft ; groundwater
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 53
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  • 8
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    In:  http://aquaticcommons.org/id/eprint/12340 | 9 | 2013-10-27 17:09:05 | 12340
    Publication Date: 2021-06-29
    Description: Predicting and averting the spread of invasive species is a core focus of resource managers in all ecosystems. Patterns of invasion are difficult to forecast, compounded by a lack of user-friendly species distribution model (SDM) tools to help managers focus control efforts.This paper presents a web-based cellular automata hybrid modeling tool developed to study the invasion pattern of lionfish (Pterois volitans/miles) in the western Atlantic and is a natural extension our previous lionfish study. Our goal is to make publically available this hybrid SDM tool and demonstrate both a test case (P. volitans/miles) and a use case (Caulerpa taxifolia). The software derived from themodel, titled Invasionsoft, is unique in its ability to examine multiple default or user-defined parameters, their relation to invasion patterns, and is presented in a rich web browser-based GUI with integrated results viewer. The beta version is not species-specific and includes adefault parameter set that is tailored to the marine habitat. Invasionsoft is provided as copyright protected freeware at http://www.invasionsoft.com.
    Keywords: Environment ; Fisheries ; Information Management ; invasive species ; species distribution models ; lionfish ; cellular automata ; Caulerpa taxifolia ; web portal ; software
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 405-417
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  • 9
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    In:  http://aquaticcommons.org/id/eprint/12583 | 9 | 2014-03-25 18:35:11 | 12583 | Central Caribbean Marine Institute
    Publication Date: 2021-06-30
    Description: In: Lang, J.C.(ed.) (2003) Status of coral reefs in the western Atlantic: results of initial surveys, Atlantic & Gulf Rapid Reef Assessment (AGRRA) Program.
    Keywords: Biology ; Environment
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 204-225
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  • 10
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    Global Coral Reef Monitoring Network | Townsville, Australia
    In:  http://aquaticcommons.org/id/eprint/12585 | 9 | 2014-03-25 18:32:11 | 12585 | Central Caribbean Marine Institute
    Publication Date: 2021-07-03
    Keywords: Conservation ; Ecology ; Environment
    Repository Name: AquaDocs
    Type: book_section
    Format: application/pdf
    Format: application/pdf
    Format: 73-84
    Format: 152
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  • 11
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    Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre | Townsville, Australia
    In:  http://aquaticcommons.org/id/eprint/12584 | 9 | 2014-03-25 18:33:50 | 12584 | Central Caribbean Marine Institute
    Publication Date: 2021-07-03
    Keywords: Conservation ; Environment
    Repository Name: AquaDocs
    Type: book_section
    Format: application/pdf
    Format: application/pdf
    Format: 239-252
    Format: 296
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  • 12
    Publication Date: 2021-07-04
    Description: Climate change with its attendant geophysical hazards is well studied. A great deal of attention has gone into analyzing climate change impacts as well as searching out possible mitigating adaptive strategies. These matters are very real concerns, especially for coastal communities. Such communities are often the most vulnerable to climate change, since their citizens frequently live in abject poverty and have limited capacity to adapt to geophysical hazards. Their situation is further complicated by the prospect of dealing with a confluence of hazards in comparison with those in other ecosystems. Against this backdrop Worldfish and the Economy and Environment Program for Southeast Asia (EEPSEA) collaborated to implement the cross-country study “Climate Change Impacts, Vulnerability Assessments, Economic and Policy Analysis of Adaptation Strategies in Selected Coastal Areas in Indonesia, Philippines, and Vietnam”. As its title suggests the study covered selected sites in Vietnam, Indonesia and the Philippines. Employing a gamut of interdisciplinary methodologies -- ranging from community-based approaches such as community hazard mapping and focus group discussions (FGDs) to regression techniques -- the study documented the impacts from three climate hazards affecting coastal communities. These were typhoon/flooding, coastal erosion, and saltwater intrusion. The team also analyzed planned adaptation options suited to implementation by communities and local governments, augmenting autonomous responses of households to protect and insure themselves from these hazards.
    Keywords: Ecology ; Environment ; Inland fisheries ; Climatic changes ; Ecosystems ; Asia ; Indonesia ; Philippines ; Vietnam
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 2
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  • 13
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    Chesapeake Biological Laboratory | Solomons Island, MD
    In:  http://aquaticcommons.org/id/eprint/12824 | 130 | 2014-02-08 04:02:55 | 12824 | University of Maryland Center for Environmental Science. Chesapeake Biological Laboratory
    Publication Date: 2021-07-06
    Description: Baltimore Harbor is polluted by discharge of sewage and industrial wastes into tributary streams and peripheral waters. The Harbor is used extensively for navigation, industrial water supply, and recreation as well as for waste disposal. The degree of pollution varies from negligible in the principal fairway to severe in the innermost sections. Private industry discharges several hundred tons of acid materials daily and is also the principal source of organic pollution.
    Description: PDF includes 141 pp. (front matter + 132 pp.).
    Keywords: Conservation ; Ecology ; Environment ; Pollution
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 132
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  • 14
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    Chesapeake Biological Laboratory | Solomons Island, MD
    In:  http://aquaticcommons.org/id/eprint/12826 | 130 | 2014-02-08 03:57:09 | 12826 | University of Maryland Center for Environmental Science. Chesapeake Biological Laboratory
    Publication Date: 2021-07-06
    Description: A study of possible causes for extensive mortality of oysters in the Upper Chesapeake Bay was taken on by year-round monitoring of conditions during a two-year period.
    Description: Reprinted from 1946 annual report, Maryland Board of Natural Resources.
    Keywords: Ecology ; Environment ; Fisheries
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 11
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  • 15
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    Chesapeake Biological Laboratory | Solomons Island, MD
    In:  http://aquaticcommons.org/id/eprint/12827 | 130 | 2014-02-10 02:21:33 | 12827 | University of Maryland Center for Environmental Science. Chesapeake Biological Laboratory
    Publication Date: 2021-07-06
    Description: Collections were made in the summer of 1942 and again at different times in 1946 and 1947. Some collections were not sufficient in numbers to allow for proper identification, so the present paper does not give a complete list. Of the 20 identified species reported on in the paper, two are new to science and ten have not been reported previously for the United States.
    Keywords: Ecology ; Environment
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 28
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  • 16
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    Mote Marine Laboratory | Sarasota, FL
    In:  blausche@mote.org | http://aquaticcommons.org/id/eprint/12899 | 9641 | 2014-06-12 16:57:16 | 12899 | Mote Marine Laboratory
    Publication Date: 2021-07-06
    Description: Many coastal communities across the United States are beginning to plan for climate-related sea level rise. While impacts and solutions will vary with local conditions, jurisdictions which have begun this process seem to pass through three common stages when developing policy for local sea level rise adaptation: l) building awareness about local sea level rise threats, 2) undertaking analyses of local vulnerabilities, and 3) developing plans and policies to deal with these vulnerabilities. The purpose of this paper is to help advance community dialogue and further inform local decision-makers about key elements and steps for addressing climate-related sea level rise. It summarizes the results of a project the Marine Policy Institute (MPI) undertook during 2011-12 to review experiences from fourteen U.S. coastal jurisdictions representing a variety of city, county, and state efforts with sea level adaptation. There are many more initiatives underway than those reflected in this sample, but the “focus jurisdictions” were selected because of the extensive information publically available on their experiences and lessons being learned that could provide insights for coastal communities, especially in Southwest Florida.
    Keywords: Environment ; Management ; Policies
    Repository Name: AquaDocs
    Type: monograph
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    Format: application/pdf
    Format: 32
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  • 17
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    LGL Ecological Research Associates, Inc. | Bryan, TX
    In:  http://aquaticcommons.org/id/eprint/14136 | 9596 | 2020-08-31 18:05:28 | 14136 | Galveston Bay Information Collection
    Publication Date: 2021-06-24
    Description: This report provides a synthesis of the observed effects of the Buccanneer Gas and Oil Field on biological systems and fisheries of the study area. Demersal fishes and macrocrustaceans, the biofouling community, reef and pelagic fishes were used as indicators of impacts. Other biological components (bacteria, plankton and in-faunal benthos) were considered as part of the environment and were addressed only to the extent that they directly impacted or limited the primary indicator groups.
    Keywords: Environment ; Pollution ; artificial reef ; demersal fish ; gas production ; macrocrustaceans ; oil production
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    Type: conference_item
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    Format: application/pdf
    Format: 82
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  • 18
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    Texas Game and Fish Commission Marine Laboratory | Rockport, TX
    In:  http://aquaticcommons.org/id/eprint/14207 | 9596 | 2020-08-23 22:50:08 | 14207 | Galveston Bay Information Collection
    Publication Date: 2021-06-24
    Description: In order to obtain information on the characteristics of water and climate that prevail in Galveston Bay, East Bay, and West Bay, established stations were sampled regularly. Information derived from samples included water temperature and salinity. Additional information of this nature was derived from other bay studies. Information on river flow, air temperature and wind were derived from publications. Water temperatures were found to follow air temperatures closely. The prevailing winds in all but two months were on-shore winds. Salinities were found to vary inversely with the volume of fresh water entering the bays from the Trinity River. West Bay, due to its locations, is affected less than the other bays by fresh water from the Trinity River. Vertical and horizontal salinity gradients were found to be the normal pattern in East Bay and Galveston Bay. West Bay, with two major passes to the Gulf of Mexico and with no major source of fresh water, normally maintained higher salinities than the other bays.
    Keywords: Chemistry ; Oceanography ; GBIC ; hydrography ; meteorology ; salinity gradients ; temperature ; salinity ; water sampling
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    Type: book_section
    Format: application/pdf
    Format: application/pdf
    Format: 7
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  • 19
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    South Central Environmental Center, NUS Corporation | Houston, TX
    In:  http://aquaticcommons.org/id/eprint/14172 | 9596 | 2020-08-31 20:26:12 | 14172 | Galveston Bay Information Collection
    Publication Date: 2021-06-24
    Description: In May 1979, Contract No. DACW64-79-C-0037, for performance of bioassays and bioaccumulation studies, chemical analyses of sediments, seawater and elutriate materials, and appropriate statistical analyses of samples obtained from the Galveston Harbor and Sabine-Neches Waterway Channels, was awarded to NUS Corporation by the Army Corps of Engineers, Galveston District. These studies are part of a continuing evaluation of the potential environmental effects of proposed ocean disposal of dredged materials and are required for compliance with provisions of Section 103 of the Marine Protection, Research and Sanctuaries Act of 1972 (PL 92-532). This final report presents the results of dredged material evaluations for the Galveston Harbor Channel project area.
    Keywords: Chemistry ; Limnology ; bioassay ; chemical analyses ; statistical analyses ; water quality
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 146
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  • 20
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    Texas Game and Fish Commission | Rockport, TX
    In:  http://aquaticcommons.org/id/eprint/14213 | 9596 | 2020-08-23 22:33:19 | 14213 | Galveston Bay Information Collection
    Publication Date: 2021-06-24
    Description: Observations and analysis of the various features of the water of upper Galveston and Trinity Bays (Area M-2) were made using dye, thermometers, chemical tests, and other appropriate methods. Information and data were also collected from numerous publications and other sources. The distribution of marine organisms relative to pollution in the Houston Ship Channel was investigated.
    Keywords: Chemistry ; Ecology ; Pollution ; chemical analysis ; physical properties ; water analysis ; pollution ; marine organisms ; ecological distribution ; GBIC
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    Type: book_section
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    Format: application/pdf
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    Texas Parks and Wildlife Department | Austin, TX
    In:  http://aquaticcommons.org/id/eprint/14262 | 9596 | 2020-08-23 20:01:31 | 14262 | Galveston Bay Information Collection
    Publication Date: 2021-06-24
    Description: In 1962 construction was begun on the Texas City and Vicinity Hurricane- Flood Protection Project, a program of the U.S. Corps of Engineers, which provided for a 16.2 mile long earthen seawall along the western shoreline of Galveston Bay. This levee, with a maximum height of 23 feet above sea level, was designed to protect low areas from tidal flooding during storms. In 1964, the Hitchcock Extension of the Hurricane-Flood Protection was proposed, a plan consisting of an 11.4 mile levee to protect the city of Hitchcock and vicinity. A portion of this levee crosses Jones Bay. Circulation in the bay would be provided by a closable tidal structure and culvert openings.
    Keywords: Ecology ; Engineering ; Environment ; flood control ; sea walls ; levees ; environmental effects ; ecology ; GBIC
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  • 22
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    University of Texas at Austin, Bureau of Economic Geology. | Austin, TX
    In:  http://aquaticcommons.org/id/eprint/14290 | 9596 | 2020-08-28 15:00:44 | 14290 | Galveston Bay Information Collection
    Publication Date: 2021-06-24
    Description: Disposal and temporary storage of spent geothermal fluids and surface subsidence and faulting are the major environmental problems that could arise from geopressured geothermal water production. Geopressured geothermal fluids are moderately to highly saline (8,000 to 72,000 parts per million total dissolved solids) and may contain significant amounts of boron (19 to 42 parts per million). Disposal of hot saline geothermal water in the subsurface saline aquifers will present the least hazard to the environment. It is not known, however, whether the disposal of as much as 54,000 m3 (310,000 barrels) of spent fluids per day into saline aquifers at the production site is technically or economically feasible. If saline aquifers adequate for fluid disposal cannot be found, geothermal fluids may have to be disposed of by open watercourses, canals and pipelines to coastal bays on the Gulf of Mexico. Overland flow or temporary storage of geothermal fluids may cause negative environmental impacts. As the result of production of large volumes of geothermal fluid, reservoir pressure declines may cause compaction of sediments within and adjacent to the reservoir. The amount of compaction depends on pressure decline, reservoir thickness, and reservoir compressibility. At present, these parameters can only be estimated. Reservoir compaction may be translated in part to surface subsidence. When differential compaction occurs across a subsurface fault, fault activation may occur and be manifested as differential subsidence across the surface trace of the fault or as an actual rupture of the land surface. The magnitude of environmental impact of subsidence and fault activation varies with current land use; the greatest impact would occur in urban areas, whereas relatively minor impacts would occur in rural, undeveloped agricultural areas. Geothermal resource production facilities on the Gulf Coast of Texas could be subject to a series of natural hazards: (1) hurricane- or storm-induced flooding, (2) winds from tropical storms, (3) coastal erosion, or (4) expansive soils. None of these hazards is generated by geothermal resource production, but each has potential for damaging geothermal production and disposal facilities that could, in turn, result in leakage of hot saline geothermal fluids.
    Keywords: Earth Sciences ; Environment ; geothermal energy ; energy resources ; wastewater ; faults ; subsidence ; waste disposal ; environmental impact ; GBIC
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    Type: monograph
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    Format: application/pdf
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  • 23
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    In:  http://aquaticcommons.org/id/eprint/14933 | 403 | 2014-03-17 19:47:30 | 14933 | United States National Ocean Service
    Publication Date: 2021-06-29
    Keywords: Environment ; Management
    Repository Name: AquaDocs
    Type: conference_item
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  • 24
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    In:  bill.sunda@noaa.gov | http://aquaticcommons.org/id/eprint/14910 | 403 | 2014-03-11 19:18:24 | 14910 | United States National Ocean Service
    Publication Date: 2021-06-28
    Description: Time series measurements of dimethylsulfide (DMS), particulate dimethylsulfoniopropionate (DMSPp), chlorophyll a (chl a), algal pigments, major nutrients, and the potential activity of DMSP lyase enzymes were made over a 2 yr period (6 March 2003 to 28 March 2005) near the mouth of the shallow, tidally mixed Newport River estuary, North Carolina, USA. DMSPp had a mean of 43 ± 20 nM (range = 10.5 to 141 nM, n = 85) and DMS a mean of 2.7 ± 1.2 nM (range = 0.9 to 7.0 nM). The mean DMS in Gallants Channel was not significantly different from that measured in the Sargasso Sea near Bermuda during a previous 3 yr time series study (2.4 ± 1.5 nM), despite there being a 43-fold higher mean chl a concentration (4.9 ± 2.4 µg l–1) at the coastal site. In winter, DMS was low and chl a was high in the surface waters of the Sargasso Sea, while the opposite was true at the coastal site. Consequently, DMS concentrations per unit algal chl a were on average 170 times higher in the Sargasso Sea than at the coastal site during the summer, but only 7 times higher during the winter. The much higher chl a-specific DMS concentrations at the oceanic site during the summer were linked to higher ratios of intracellular DMSP substrate and DMSP lyase enzyme per unit chl a. These differences in turn appear to be linked to large differences in nutrient concentrations and solar UV stress at the 2 sites and to associated differences in the composition of algal assemblages and physiological acclimation of algal cells.
    Keywords: Chemistry ; Ecology ; Management
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    Type: article , TRUE
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    Format: application/pdf
    Format: 281-294
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  • 25
    Publication Date: 2021-06-28
    Description: Innovative research relating oceans and human health is advancing our understanding of disease-causing organisms in coastal ecosystems. Novel techniques are elucidating the loading, transport and fate of pathogens in coastal ecosystems, and identifying sources of contamination. This research is facilitating improved risk assessments for seafood consumers and those who use the oceans for recreation. A number of challenges still remain and define future directions of research and public policy. Sample processing and molecular detection techniques need to be advanced to allow rapid and specific identification of microbes of public health concern from complex environmental samples. Water quality standards need to be updated to more accurately reflect health risks and to provide managers with improved tools for decision-making. Greater discrimination of virulent versus harmless microbes is needed to identify environmental reservoirs of pathogens and factors leading to human infections. Investigations must include examination of microbial community dynamics that may be important from a human health perspective. Further research is needed to evaluate the ecology of non-enteric water-transmitted diseases. Sentinels should also be established and monitored, providing early warning of dangers to ecosystem health. Taken together, this effort will provide more reliable information about public health risks associated with beaches and seafood consumption, and how human activities can affect their exposure to disease-causing organisms from the oceans.
    Description: Article includes 14 pages.
    Keywords: Environment ; Health ; Management
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  • 26
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    In:  milton.levin@uconn.edu | http://aquaticcommons.org/id/eprint/14911 | 403 | 2014-03-10 20:01:03 | 14911 | United States National Ocean Service
    Publication Date: 2021-06-28
    Description: The immunotoxic potential of domoic acid (DA), a well-characterized neurotoxin, has not been fully investigated. Phagocytosis and lymphocyte proliferation were evaluated following in vitro and in vivo exposure to assay direct vs indirect effects. Mice were injected intraperitoneally with a single dose of DA (2.5 µg/g b.w.) and sampled after 12, 24, or 48 hr. In a separate experiment, leukocytes and splenocytes were exposed in vitro to 0, 1, 10, or 100 µM DA. In vivo exposure resulted in a significant increase in monocyte phagocytosis (12-hr), a significant decrease in neutrophil phagocytosis (24-hr), a significant decrease in monocyte phagocytosis (48-hr), and a significant reduction in T-cell mitogen-induced lymphocyte proliferation (24-hr). In vitro exposure significantly reduced neutrophil and monocyte phagocytosis at 1 µM. B- and T-cell mitogen-induced lymphocyte proliferation were both significantly increased at 1 and 10 µM, and significantly decreased at 100 µM. Differences between in vitro and in vivo results suggest that DA may exert its immunotoxic effects both directly and indirectly. Modulation of cytosolic calcium suggests that DA exerts its effects through ionotropic glutamate subtype surface receptors at least on monocytes. This study is the first to identify DA as an immunotoxic chemical in a mammalian species.
    Keywords: Chemistry ; Health
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    Format: application/pdf
    Format: 636-659
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  • 27
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14930 | 403 | 2014-03-17 19:10:14 | 14930 | United States National Ocean Service
    Publication Date: 2021-06-29
    Description: An activity book for children highlighting coral reef issues. The book includes coral reef information, fun facts, drawings to color, connect the dots, find a word, images, matching, etc. Target audience is K-6th graders.
    Keywords: Education ; Environment
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 26
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  • 28
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  matt.kendall@noaa.gov | http://aquaticcommons.org/id/eprint/14938 | 403 | 2014-03-17 18:48:02 | 14938 | United States National Ocean Service
    Publication Date: 2021-06-29
    Description: Digital maps of the shallow (〈~30m deep) coral reef ecosystems of Majuro Atoll, Republic of the Marshall Islands, were created through visual interpretation of remote sensing imagery acquired between 2004 and 2006. Reef ecosystem features were digitized directly into a Geographic Information System. Benthic features were categorized according to a classification scheme with attributes including zone (location such as lagoon or forereef, etc.), structure (bottom type such as sand or patch reef, etc.) and percent hard bottom. This atlas consists of 27 detailed maps displaying reef zone and structure of coral ecosystems around Majuro. Adjacent maps in the atlas overlap slightly to ensure complete coverage. Maps and associated products can be used to support science and management activities on Majuro reef ecosystems including inventory, monitoring, conservation, and sustainable development applications. Maps are not to be used for navigation.
    Keywords: Environment ; Management ; Planning
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 55
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  • 29
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    In:  http://aquaticcommons.org/id/eprint/15564 | 8 | 2014-11-06 00:57:26 | 15564
    Publication Date: 2021-07-08
    Description: EXTRACT (SEE PDF FOR FULL ABSTRACT):Arima analysis was used to compute cross-correlations between principal component axes that described environmental variables, chlorophyll concentration and zooplankton density for the Sacramento and San Joaquin rivers and Suisun Bay. ... Cross-correlations among the time series may provide information about links between environmental and biological variables within the estuary and the possible influence of climate.
    Keywords: Biology ; Environment ; Limnology ; Oceanography ; PACLIM
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    Format: application/pdf
    Format: application/pdf
    Format: 67-69
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  • 30
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    In:  http://aquaticcommons.org/id/eprint/15095 | 403 | 2014-05-28 03:30:26 | 15095 | United States National Marine Fisheries Service
    Publication Date: 2021-07-02
    Description: As nearshore fish populations decline, many commercialfishermen have shifted fishing effort to deeper continental slope habitats to target fishes for which biologicalinformation is limited. One such fishery that developed in the northeastern Pacific Ocean in the early 1980s was for the blackgill rockfish (Sebastes melanostomus), a deep-dwelling (300−800 m) species that congregates over rocky pinnacles, mainly from southern California to southernOregon. Growth zone-derived age estimates from otolith thin sections were compared to ages obtained from the radioactive disequilibria of 210Pb, in relation to its parent, 226Ra, in otolith cores of blackgill rockfish. Age estimates were validated up to 41 years, and a strong pattern of agreement supported a longevity exceeding 90years. Age and length data fitted to the von Bertalanffy growth function indicated that blackgill rockfish are slow-growing (k= 0.040 females, 0.068 males) and that females grow slower than males, but reach a greater length. Age at 50% maturity, derived from previously published length-at-maturity estimates, was 17 years for males and 21 years for females. The results of this study agree with general life history traits already recognized for many Sebastes species, such as long life, slow growth, and late age at maturation. These traits may undermine the sustainability of blackgill rockfish populations when heavy fishing pressure, such as that which occurred in the 1980s, is applied.
    Keywords: Chemistry ; Fisheries ; Management
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  • 31
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    In:  http://aquaticcommons.org/id/eprint/15137 | 403 | 2014-05-23 00:06:17 | 15137 | United States National Marine Fisheries Service
    Publication Date: 2021-07-03
    Keywords: Chemistry ; Fisheries
    Repository Name: AquaDocs
    Type: article , TRUE
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    Format: application/pdf
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  • 32
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    In:  http://aquaticcommons.org/id/eprint/15139 | 403 | 2014-05-23 00:04:39 | 15139 | United States National Marine Fisheries Service
    Publication Date: 2021-07-03
    Description: Horseshoe crabs (Limulus polyphemus) are caught by commercial fishermen for use as bait in eel and whelk fisheries (Berkson and Shuster, 1999)—fisheries with an annual economic value of $13 to $17 million (Manion et al.1). Horse-shoe crabs are ecologically important, as well (Walls et al., 2002). Migratory shorebirds rely on horseshoe crab eggs for food as they journey from South American wintering grounds to Arctic breeding grounds (Clark, 1996). Horse-shoe crabs are also essential for public health (Berkson and Shuster, 1999). Biomedical companies bleed horse-shoe crabs to extract a chemical used to detect the presence of endotoxins pathogenic to humans in injectable and implantable medical devices (Novitsky, 1984; Mikkelsen, 1988). Bled horseshoe crabs are returned to the wild, subject to the possibility of postbleeding mortality. Recent concerns of overharvesting have led to conflicts among commercial fishermen, environmentalists acting on behalf of the shorebirds, and biomedical companies (Berkson and Shuster, 1999; Walls et al., 2002).
    Keywords: Biology ; Chemistry ; Fisheries
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    Format: application/pdf
    Format: 457-459
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  • 33
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    In:  http://aquaticcommons.org/id/eprint/15161 | 403 | 2014-05-29 07:19:00 | 15161 | United States National Marine Fisheries Service
    Publication Date: 2021-07-03
    Description: The use of strontium-to-calcium (Sr/Ca) ratios in otoliths is becoming a standard method to describe life history type and the chronology of migrations between freshwater and seawater habitats in teleosts (e.g. Kalish, 1990; Radtke et al., 1990; Secor, 1992; Rieman et al., 1994; Radtke, 1995; Limburg, 1995; Tzeng et al. 1997; Volk et al., 2000; Zimmerman, 2000; Zimmerman and Reeves, 2000, 2002). This method provides critical information concerning the relationship and ecology of species exhibiting phenotypic variation in migratory behavior (Kalish, 1990; Secor, 1999).Methods and procedures, however, vary among laboratories because a standard method or protocol for measurement ofSr in otoliths does not exist. In this note, we examine the variations in analytical conditions in an effort to increase precision of Sr/Ca measurements. From these findings we argue that precision can be maximized withhigher beam current (although there is specimen damage) than previously recommended by Gunn et al. (1992).
    Keywords: Chemistry ; Fisheries
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  • 34
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    In:  http://aquaticcommons.org/id/eprint/15180 | 403 | 2014-05-29 07:50:04 | 15180 | United States National Marine Fisheries Service
    Publication Date: 2021-07-04
    Keywords: Chemistry ; Fisheries
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 915-922
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  • 35
    Publication Date: 2021-07-04
    Keywords: Biology ; Chemistry ; Fisheries ; Management
    Repository Name: AquaDocs
    Type: article , TRUE
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    Format: application/pdf
    Format: 910-914
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  • 36
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    In:  http://aquaticcommons.org/id/eprint/15184 | 403 | 2014-05-29 07:55:35 | 15184 | United States National Marine Fisheries Service
    Publication Date: 2021-07-04
    Description: Otolith thermal marking is an efficient method for mass marking hatchery-reared salmon and can be used to estimate the proportion of hatchery fish captured in a mixed-stock fishery. Accuracy of the thermal pattern classification depends on the prominence of the pattern, the methods used to prepare and view the patterns, and the training and experience of the personnel who determine the presence or absence of a particular pattern. Estimating accuracy rates is problematic when no secondary marking is available and no error-free standards exist. Agreement measures, such as kappa (κ), provide a relative measure of the reliability of the determinations when independent readings by two readers are available, but the magnitude of κ can be influenced by the proportion of marked fish. If a third reader is used or if two or more groups of paired readings are examined, latent class models can provide estimates of the error rates of each reader. Applications of κ and latent class models are illustrated by a program providing contribution estimates of hatchery-reared chum and sockeye salmon in Southeast Alaska.
    Keywords: Biology ; Chemistry ; Fisheries
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  • 37
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    In:  http://aquaticcommons.org/id/eprint/15195 | 403 | 2014-05-30 07:14:43 | 15195 | United States National Marine Fisheries Service
    Publication Date: 2021-07-04
    Description: Skeletochronological data on growth changes in humerus diameter were used to estimate the age of Hawaiian green seaturtles ranging from 28.7 to 96.0 cm straight carapace length. Two age estimation methods, correction factor and spline integration, were compared, giving age estimates ranging from 4.1 to 34.6 and from 3.3 to 49.4 yr, respectively, for the sample data. Mean growth rates of Hawaiian green seaturtles are 4–5 cm/yr in early juveniles, decline to a relatively constant rate of about 2 cm/yr by age 10 yr, then decline again to less than 1 cm/yr as turtles near age 30 yr. On average, age estimates from the two techniques differed by just a few years for juvenile turtles, but by wider margins for mature turtles. The spline-integration method models the curvilinear relationship between humerus diameter and the width of periosteal growth increments within the humerus, and offers several advantages over the correction-factor approach.
    Keywords: Biology ; Chemistry ; Fisheries
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    Format: application/pdf
    Format: 117-127
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  • 38
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    In:  http://aquaticcommons.org/id/eprint/15230 | 403 | 2014-06-01 18:56:50 | 15230 | United States National Marine Fisheries Service
    Publication Date: 2021-07-05
    Description: Independent molecular markers based on mitochondrial and nuclear DNA were developed to provide positive identification of istiophorid and xiphiid billfishes (marlins, spearfishes, sailfish, and swordfish). Both classes of markers were based on amplification of short segments (〈1.7 kb) of DNA by the polymerase chain reaction and subsequent digestion with informative restriction endonucleases. Candidate markers were evaluated for their ability to discriminate among the different species and the level of intraspecific variation they exhibited. The selected markers require no more than two restriction digestions to allow unambiguous identification, although it was not possible to distinguish between white marlin and striped marlin with any of the genetic characters screened in our study. Individuals collected from throughout each species’ range were surveyed with the selected markers demonstrating low levels of intraspecific character variation within species. The resulting keys provide two independent means for the forensic identification of fillets and for specific identification of early life history stages.
    Keywords: Biology ; Chemistry ; Fisheries ; Management
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    Format: application/pdf
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  • 39
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    In:  http://aquaticcommons.org/id/eprint/15228 | 403 | 2014-06-01 18:57:37 | 15228 | United States National Marine Fisheries Service
    Publication Date: 2021-07-05
    Description: Catch rates in the South African rock lobster (Jasus lalandii) fishery declined after 1989 in response to reduced adult somatic growth rates and a consequent reduction in recruitment to the fishable population. Although spatial and temporal trends in adult growth are well described, little is known about how juvenile growth rates have been affected. In our study, growth rates of juvenile rock lobster on Cape Town harbor wall were compared with those recorded at the same site more than 25 years prior to our study, and with those on a nearby natural nursery reef. We found that indices of somatic growth measured during 1996–97 at the harbor wall had declined significantly since 1971–72. Furthermore, growth was slower among juvenile J. lalandii at the harbor wall than those at the natural nursery reef. These results suggest that growth rates of juvenile and adult J. lalandii exhibit similar types of spatiotemporal patterns. Thus, the recent coastwide decline in adult somatic growth rates might also encompass smaller size classes.
    Keywords: Biology ; Chemistry ; Fisheries
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    Format: application/pdf
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  • 40
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    In:  http://aquaticcommons.org/id/eprint/15236 | 403 | 2014-06-01 18:54:03 | 15236 | United States National Marine Fisheries Service
    Publication Date: 2021-07-05
    Description: Loggerhead sea turtles (Caretta caretta) are migratory, long-lived, and slow maturing. They are difficult to study because they are seen rarely and their habitats range over vast stretches of the ocean. Movements of immature turtles between pelagic and coastal developmental habitats are particularly difficult to investigate because of inadequate tagging technologies and the difficulty in capturing significant numbers of turtles at sea. However, genetic markers found in mitochondrial DNA (mtDNA) provide a basis for predicting the origin of juvenile turtles in developmental habitats. Mixed stock analysis was used to determine which nesting populations were contributing individuals to a foraging aggregation of immature loggerhead turtles (mean 63.3 cm straight carapace length [SCL]) captured in coastal waters off Hutchinson Island, Florida. The results indicated that at least three different western Atlantic loggerhead sea turtle subpopulations contribute to this group: south Florida (69%), Mexico (20%), and northeast Florida-North Carolina (10%). The conservation and management of these immature sea turtles is complicated by their multinational genetic demographics.
    Keywords: Biology ; Chemistry ; Fisheries ; Management
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    Format: application/pdf
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  • 41
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    In:  http://aquaticcommons.org/id/eprint/15248 | 403 | 2014-05-30 21:15:27 | 15248 | United States National Marine Fisheries Service
    Publication Date: 2021-07-05
    Description: We used allozyme, microsatellite, and mitochondrial DNA (mtDNA) data to test for spatial and interannual genetic diversity in wall-eye pollock (Theragra chalcogramma) from six spawning aggregations representing three geographic regions: Gulf of Alaska, eastern Bering Sea, and eastern Kamchatka. Interpopulation genetic diversity was evident primarily from the mtDNA and two allozyme loci (SOD-2*, MPI*). Permutation tests ˆindicated that FST values for most allozyme and microsatellite loci were not significantly greater than zero. The microsatellite results suggested that high locus polymorphism may not be a reliable indicator of power for detecting population differentiation in walleye pollock. The fact that mtDNA revealed population structure and most nuclear loci did not suggests that the effective size of most walleye pollock populations is large (genetic drift is weak) and migration is a relatively strong homogenizing force. The allozymes and mtDNA provided mostly concordant estimates of patterns of spatial genetic variation. These data showed significant genetic variation between North American and Asian populations. In addition, two spawning aggregations in the Gulf of Alaska, in Prince William Sound, and off Middleton Island, appeared genetically distinct from walleye pollock spawning in the Shelikof Strait and may merit management as a distinct stock. Finally, we found evidence of interannual genetic variation in two of three North American spawning aggregations, similar in magnitude to the spatial variation among North American walleye pol-lock. We suggest that interannual genetic variation in walleye pollock may be indicative of one or more of the following factors: highly variable reproductive success, adult philopatry, source-sink metapopulation structure, and intraannual variation (days) in spawning timing among genetically distinct but spatially identical spawning aggregates.
    Keywords: Biology ; Chemistry ; Fisheries
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  • 42
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    In:  http://aquaticcommons.org/id/eprint/15239 | 403 | 2014-06-01 18:52:47 | 15239 | United States National Marine Fisheries Service
    Publication Date: 2021-07-05
    Description: Intergeneric hybridization between the epinepheline serranids Cephalopholis fulva and Paranthias furcifer in waters off Bermuda was investigated by using morphological and molecular characters. Putative hybrids, as well as members of each presumed parent species, were analyzed for 44 morphological characters and screened for genetic variation at 16 nuclear allozyme loci, two nuclear (n)DNA loci, and three mitochondrial (mt)DNA gene regions. Four of 16 allozyme loci, creatine kinase (CK-B*), fumarase (FH*), isocitrate dehydrogenase (ICDH-S*), and lactate dehydrogenase (LDH-B*), were unique in C. fulva and P. furcifer. Restriction fragments of two nuclear DNA intron regions, an actin gene intron and the second intron in the S7 ribosomal protein gene, also exhibited consistent differences between the two presumed parent species. Restriction fragments of three mtDNA regions—ND4, ATPase 6, and 12S/16S ribosomal RNA—were analyzed to identify maternal parentage of putative hybrids. Both morphological data and nuclear genetic data were found to be consistent with the hypothesis that the putative hybrids were the result of interbreeding between C. fulva and P. furcifer. Mean values of 38 morphological characters were different between presumed parent species, and putative hybrids were intermediate to presumed parent species for 33 of these characters. A principal component analysis of the morphological and meristic data was also consistent with hybridization between C. fulva and P. furcifer. Thirteen of 15 putative hybrids were heterozygous at all diagnostic nuclear loci, consistent with F1 hybrids. Two putative hybrids were identified as post-F1 hybrids based on homozygosity at one nuclear locus each. Mitochondrial DNA analysis showed that the maternal parent of all putative hybrid individuals was C. fulva. A survey of nuclear and mitochondrial loci of 57 C. fulva and 37 P. furcifer from Bermuda revealed no evidence of introgression between the parent species mediated by hybridization.
    Keywords: Biology ; Chemistry ; Fisheries
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    Mote Marine Laboratory | Sarasota, FL
    In:  libarc@mote.org | http://aquaticcommons.org/id/eprint/15269 | 9719 | 2014-06-12 16:55:28 | 15269 | Mote Marine Laboratory
    Publication Date: 2021-07-05
    Description: The bays and estuaries of the southeast United States coast generally are thought to serve as nursery areas for various species of coastal sharks, where juvenile sharks find abundant food and are less exposed to predation by larger sharks. Because these areas typically support substantial commercial and recreational fisheries, fishing mortality of sharks in the nurseries particularly by bycatch, may be significant. This two-year project assessed the relative importance of two estuaries of the southwest Florida Gulf coast, Tampa Bay and Charlotte Harbor/Pine Island Sound, as shark nursery areas, and examined potential fishing mortality of these young sharks in the nurseries.
    Description: National Oceanic and Atmospheric Administration/National Marine Fisheries Service
    Description: MARFIN Program
    Description: NOAA/NMFS/MARFIN Project NA17FF0378-01
    Keywords: Biology ; Ecology ; Environment ; Limnology ; sharks ; fishery management ; fisheries ; estuarine nurseries ; Tampa Bay (Florida) ; Charlotte Harbor (Florida)
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 183
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    In:  http://aquaticcommons.org/id/eprint/15349 | 9513 | 2014-09-19 15:10:35 | 15349
    Publication Date: 2021-07-06
    Description: Investigation on the species composition and abundance of zooplankton in Ogun River, Abeokuta, Ogun state, Southwestern Nigeria was carried out for a period of seven months (December, 2011-June, 2012), Using hand trawling method, 55 µm mesh size plankton net was trawled horizontally ten times to capture zooplankton. The zooplankton samples were put into properly labeled plastic containers and preserved in 4% formalin solution. A total of sixteen genera from five taxonomic groups were recorded from Ogun River. Cladocera predominated both in terms of species composition and abundance. Five species of Cladocera was recorded consisting of 31.25%. Protozoa and Rotifera recorded four species each consisting of 25%. Copepoda recorded two species consisting of 12.5%, and Ostracoda with one species consisting of 6.25%. The low nature of zooplankton abundance and species composition observed in this study must have been caused by the polluted nature of the water due to the anthropogenic activities carried out around its shores The dominance of Cladocera in this river is similar to findings from River Echara and River Imo, Southeastern Nigeria.
    Keywords: Aquaculture ; Ecology ; Environment ; Fisheries ; Limnology ; Management ; Pollution
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 8-10
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    In:  http://aquaticcommons.org/id/eprint/15351 | 9513 | 2014-09-19 15:29:26 | 15351
    Publication Date: 2021-07-06
    Description: The aim of this study was to investigate the monthly spatial occurrence of phytoplankton and zooplankton in River Ogun, Abeokuta, Southwest Nigeria. This was carried out for seven months between December, 2011 and June, 2012 in 4 stations. A total of 41 species of phytoplankton and 16 zooplankton species from 5 classes respectively were recorded. Zooplankton was dominated by Cladocera throughout the study period while phytoplankton was dominated by blue green algae (Cyanophyta or Cyanobacteria). The dominance of Cyanophyta in this river is similar to findings by Sekadende and co-workers, Ogato, Deng and co-worker, and Shakila and co-worker. The dominance of Cladocera in this river is similar to findings by Ude and co-workers, and Ogbuagu and co-worker.
    Keywords: Aquaculture ; Ecology ; Environment ; Fisheries ; Limnology ; Management ; Pollution
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    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 193-203
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    In:  http://aquaticcommons.org/id/eprint/15348 | 9513 | 2014-09-19 15:11:35 | 15348
    Publication Date: 2021-07-06
    Description: The phytoplankton species composition and abundance in Ogun River, Ogun state, Southwest Nigeria was studied for a period of seven months (December, 2011 - June, 2012), a total of forty-one genera belonging to five taxonomic groups were recorded from Ogun River. The phytoplankton species composition was surpassed by Chrysophyta with 15 species consisting of 36.6% followed by Chlorophyta with 14 consisting of 34.1%. This was followed by Cyanophyta (7 species) consisting of 17.1%, Euglenophyta with 3 species consisting of 7.3% and Pyrrophyta with 2 species consisting 4.92%. Cyanophyta was the highest in abundance consisting of 41% while the lowest in abundance was Pyrrophyta consisting of 1.5%. The low nature of phytoplankton abundance and diversity observed in this study must have been caused by the polluted nature of the water due to the anthropogenic activities carried out around its shores The dominance of Cyanophyta in this river is similar to findings from Lake Victoria, Lake Bishoftu, Lake Chaohu and the temple pond of Thirupour.
    Keywords: Aquaculture ; Ecology ; Environment ; Fisheries ; Limnology ; Management ; Pollution
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    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 4-7
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    In:  http://aquaticcommons.org/id/eprint/15350 | 9513 | 2014-09-19 15:17:44 | 15350
    Publication Date: 2021-07-06
    Description: This study assessed the physico-chemical quality of River Ogun, Abeokuta, Ogun state, Southwestern Nigeria. Four locations were chosen spatially along the water course to reflect a consideration of all possible human activities that are capable of changing the quality of river water. The water samples were collected monthly for seven consecutive months (December 2011 – June 2012) at the four sampling stations. pH, air temperature (℃), water temperature (℃), conductivity (µs/cm) and total dissolved solids (mg/L) were conducted in-situ with the use of HANNA Combo pH and EC multi meter Hi 98129 and Mercury-in-glass thermometer while dissolved oxygen (mg/L), nitrate (mg/L), phosphate (mg/L), alkalinity (mg/L) and hardness (mg/L) were determined ex-situ using standard methods. Results showed that dissolved oxygen, hydrogen ion concentration, total hardness and nitrate were above the maximum permissible limit of National Administration for Food, Drugs and Control (NAFDAC), Standard Organization of Nigeria (SON), Federal Environmental Protection Agency (FEPA), United States Environmental Protection Agency (USEPA), European Union (EU) and World Health Organization (WHO) for drinking water during certain months of the study period. Results also showed that water temperature and conductivity were within the permissible limits of all the standards excluding FEPA. However, total dissolved solids and alkalinity were within the permissible limits of all the standards. Adejuwon and Adelakun, (2012) also reported similar findings on Rivers Lala, Yobo and Agodo in Ewekoro local government area of Ogun state, Nigeria. Since most of the parameters measured were above the maximum permissible limits of the national and international standards, it can be concluded that the water is unfit for domestic uses, drinking and aquacultural purposes and therefore needs to be treated if it is to be used at all. The low dissolved oxygen values for the first four months was too low i.e. 〈 5 mg/L. This is most likely as a result of the amount of effluents discharged into the river. To prevent mass extinction of aquatic organisms due to anoxic conditions, proper regulations should be implemented to reduce the organic load the river receives.
    Keywords: Chemistry ; Environment ; Health ; Management ; Pollution
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    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 79-84
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    Pacific Regional Environment Programme (SPREP) | Apia, Samoa
    In:  irc@sprep.org | http://aquaticcommons.org/id/eprint/15369 | 11964 | 2014-09-25 11:47:56 | 15369 | Secretariat of the Pacific Regional Environment Programme (SPREP)
    Publication Date: 2021-07-06
    Description: BIORAP
    Description: BEM
    Description: Hard copies are also available from: irc@sprep.org
    Keywords: Aquaculture ; Conservation ; Earth Sciences ; Ecology ; Environment ; Oceanography ; rapid biodiversity assessment ; pacific ; terrestrial ; marine ; guidelines ; natural resources conservation area ; oceania ; sprep ; 2014 ; Pacific Regional Environment Programme (SPREP) ; Wildlands
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 54
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    In:  http://aquaticcommons.org/id/eprint/16179 | 12051 | 2015-02-09 07:35:49 | 16179 | Society of Fisheries Technologists, India
    Publication Date: 2021-06-30
    Description: The object of this study was to determine the value of physical, bacteriological and chemical tests used to find out and compare the indices of quality of prawns stored at 0°C and at 18°C. pH value, nature of drip, the total bacterial count, presence or absence of tryptophan, trimethylamine content, glycogen, lactic acid, vitamins such as thiamin, riboflavin and niacin were estimated periodically to evaluate the quality of prawns stored at 0°C, whereas in addition to organoleptic changes, pH, bacterial count, nature of growth in peptone water, soluble protein in salt solution and loss of moisture, glycogen, lactic acid, and changes in vitamin B contents were noted periodically for prawns stored at -l8°C. Riboflavin and niacin were not affected appreciably but the retention of thiamin in prawns was very low.
    Keywords: Chemistry ; Fisheries ; chemical properties ; quality control ; Penaeus indicus ; processing fishery products ; cold storage ; storage effects
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    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 102-108
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    In:  http://aquaticcommons.org/id/eprint/16190 | 12051 | 2015-02-10 07:56:55 | 16190 | Society of Fisheries Technologists, India
    Publication Date: 2021-06-30
    Description: Fresh Bombay ducks and Bombay ducks dried (a) without any pre-treatment or (b) after brining with NaCl solutions of 15% and 7.5% concentrations for 18 hours were analyzed for moisture, ash, minerals, vitamins, fat, free fatty acids, peroxide value, thiobarbituric acid value, total protein, total amino nitrogen, soluble proteins and trimethylamine contents. All the dried samples were stored in (a) tightly closed tin containers or (b) polythene bags and analyzed for the above mentioned constituents every 1½ months. It was observed that brining did not exercise any marked influence on keeping properties. Organoleptic observations showed that fish stored in tin containers kept better and longer than those stored in polythene bags.
    Keywords: Biology ; Chemistry ; chemical composition ; Harpodon nehereus ; Bombay ducks ; nutritive value ; storage methods
    Repository Name: AquaDocs
    Type: article
    Format: application/pdf
    Format: application/pdf
    Format: 170-179
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    Louisiana Universities Marine Consortium | Chauvin, LA
    In:  http://aquaticcommons.org/id/eprint/16531 | 30 | 2015-03-30 17:02:26 | 16531 | Louisiana Universities Marine Consortium (LUMCON)
    Publication Date: 2021-07-06
    Description: This report reviews some of the natural ecological processes at work within a salt marsh as they relate to a spill of natural gas condensate - a mixture of aliphatic hydrocarbons, n-hexane, benzene, toluene, and xylene. It also reviews the environmental impacts of some of the components of natural gas condensate as well as related compounds (crude oil, higher molecular weight hydrocarbons, polycyclic aromatic hydrocarons - PAHs, linear alkyl-benzenes - LABs, etc.) on salt marsh ecosystems in southern Louisiana and elsewhere in the world. The behavior and persistence of these compounds once they have entered the environment is also considered.
    Description: A report to El Paso Energy, Inc., Houston, Texas. PDF includes front matter, 62 pages of text, 40 figures, and 9 tables.
    Keywords: Chemistry ; Ecology ; Environment ; Pollution
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 122
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    Bachand & Associates | Davis, CA
    In:  Philip.Bachand@tetratech.com | http://aquaticcommons.org/id/eprint/11289 | 393 | 2013-08-01 15:54:12 | 11289 | Bachand & Associates
    Publication Date: 2021-06-30
    Description: Project fact sheet prepared in cooperation with the USDA Natural Resources Conservation Service and the Kings River Conservation District.
    Description: United States Department of Agriculture Natural Resources Conservation Service
    Description: Terranova Ranch
    Description: Bachand & Associates
    Description: Sustainable Conservation
    Description: University of California Davis
    Description: Conservation Innovation Grant (CIG) Agreement No. 68-9104-0-128
    Keywords: Agriculture ; Earth Sciences ; Engineering ; Environment ; Management ; flood flow ; BMPs ; best management practices ; groundwater
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 4
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    Division of Planning Coordination, Office of the Governor | Austin, TX
    In:  http://aquaticcommons.org/id/eprint/14129 | 9596 | 2020-08-31 18:00:16 | 14129 | Galveston Bay Information Collection
    Publication Date: 2021-06-24
    Description: Many policy decisions which will affect Coastal Zone activities must be made within the near future with inadequate quantitative economic, social, and environmental criteria. It is feasible to have an interim state policy allowing continued economic growth in the Coastal Zone but constraining such activities to coastal environmental units that would receive minimum detrimental environmental impact, thereby retaining as many options as possible for the State in the future. Each coastal environmental unit was evaluated in terms of its natural capability to sustain human use that affects its physical, hydrological, geological, chemical, and biological properties, and is grouped in an appropriate resource capability class. Each coastal environmental unit has at least one human activity which if uncontrolled would exceed the natural capacity of the unit. The problem of pollution of the groundwater aquifers and the lack of controls on groundwater use are emphasized. Other coastal environmental units such as the freshwater input, the coastal barriers, the wetlands and the grassflats, and the oyster reefs are termed threatened because they are in a delicate natural balance, are particularly susceptible to certain uses, and are important in the protection of life, property, or the natural coastal ecosystem. Although the major emphasis in this report is on those activities of man that may detrimentally affect coastal environmental units and resources, compatible uses also are outlined. Hypothetical examples are given to indicate the economic and social consequences arising from the implementation of management tools to lessen detrimental environmental impact. The conclusions outlined present positive steps needed to develop an effective Texas coastal management program.
    Description: Coastal Resources Management Program
    Keywords: Conservation ; Environment ; Management ; Policies ; coastal zone management ; seashore ecology
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 140
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    Texas Game and Fish Commission, Marine Laboratory | Rockport, TX
    In:  http://aquaticcommons.org/id/eprint/14209 | 9596 | 2020-08-23 23:19:32 | 14209 | Galveston Bay Information Collection
    Publication Date: 2021-06-24
    Description: This report is based on a total of 542 samples, 29063 brown shrimp and 14,569 white shrimp. Semi-monthly sampling of juvenile shrimp in Texas bays in 1961 confirmed that there are at least three waves of juvenile brown shrimp, Penaeus aztecus, and white shrimp, Penaeus setiferus, entering bay nursery habitats. The greatest abundance of juvenile browns occurred in May and June, whereas juvenile whites were present in fair numbers from July through December. Growth rates during July and August were highest for both species, with that for browns computed up to 1.5 mm per day and that for whites up to 1.8 mm per day. A sharp drop in abundance of both species in the bay this year was reflected later in almost direct proportion to the Gulf commercial catch. Bay environmental conditions possibly affecting abundance of at least the brown shrimp include higher river runoff, lower bay salinities, and lower bay water temperatures at a time when most of the larval browns were entering nursery areas. It is more probable, however, that some adverse condition in the Gulf was the main cause of the poor shrimp production of 1961. It was again found that in many shallow, tertiary bays and bayous shrimp do not reach the proper size for harvesting.
    Keywords: Aquaculture ; Environment ; GBIC ; penaeid shrimp ; Penaeus setiferus ; Penaeus aztecus ; brown shrimp ; white shrimp ; juveniles ; abundance ; seasonal distribution ; habitat ; environmental factors
    Repository Name: AquaDocs
    Type: book_section
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    Format: application/pdf
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    Texas Game and Fish Commission Marine Laboratory | Rockport, TX
    In:  http://aquaticcommons.org/id/eprint/14208 | 9596 | 2020-08-31 20:16:09 | 14208 | Galveston Bay Information Collection
    Publication Date: 2021-06-24
    Description: Objectives: To maintain records of hydrographic and climatological data as an aid in evaluating changes in bay fauna. To summarize these records in a form which makes their interpretation as components of the biotic environment more convenient.
    Keywords: Atmospheric Sciences ; Ecology ; Environment ; hydrography ; meteorology ; climatic data ; hydrographic data ; GBIC
    Repository Name: AquaDocs
    Type: book_section
    Format: application/pdf
    Format: application/pdf
    Format: 15
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    In:  Mike.Twiner@noaa.gov | http://aquaticcommons.org/id/eprint/14901 | 403 | 2014-03-10 19:58:44 | 14901 | United States National Ocean Service
    Publication Date: 2021-06-28
    Description: Azaspiracids (AZA) are polyether marine toxins that accumulate in various shellfish species and have been associated with severe gastrointestinal human intoxications since 1995. This toxin class has since been reported from several countries, including Morocco and much of western Europe. A regulatory limit of 160 μg AZA/kg wholeshellfish flesh was established by the EU in order to protect human health; however, in some cases, AZA concentrations far exceed the action level. Herein we discuss recent advances on the chemistry of various AZA analogs, review the ecology of AZAs, including the putative progenitor algal species, collectively interpret the in vitro and in vivo data on the toxicology of AZAs relating to human health issues, and outline the European legislature associated with AZAs.
    Keywords: Chemistry ; Ecology ; Fisheries ; Health
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    Type: article , TRUE
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    Format: application/pdf
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    Publication Date: 2021-06-28
    Description: Ciguatoxins (CTX) are polyether neurotoxins that target voltage-gated sodium channels and are responsible for ciguatera, the most common fish-borne food poisoning in humans. This study characterizes the global transcriptional response of mouse liver to a symptomatic dose (0.26 ng/g) of the highly potent Pacific ciguatoxin-1 (P-CTX-1). At 1 h post-exposure 2.4% of features on a 44K whole genome array were differentially expressed (p ≤ 0.0001), increasing to 5.2% at 4 h and decreasing to 1.4% by 24 h post-CTX exposure. Data were filtered (|fold change| ≥ 1.5 and p ≤ 0.0001 in at least one time point) and a trend set of 1550 genes were used for further analysis. Early gene expression was likely influenced prominently by an acute 4°C decline in core body temperature by 1 h, which resolved by 8 h following exposure. An initial downregulation of 32 different solute carriers, many involved in sodium transport, was observed. Differential gene expression in pathways involving eicosanoid biosynthesis and cholesterol homeostasis was also noted. Cytochrome P450s (Cyps) were of particular interest due to their role in xenobiotic metabolism. Twenty-seven genes, mostly members of Cyp2 and Cyp4 families, showed significant changes in expression. Many Cyps underwent an initial downregulation at 1 h but were quickly and strongly upregulated at 4 and 24 h post-exposure. In addition to Cyps, increases in several glutathione S-transferases were observed, an indication that both phase I and phase II metabolic reactions are involved in the hepatic response to CTX in mice.
    Keywords: Chemistry ; Health
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    Format: application/pdf
    Format: 298-310
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    In:  rikk_kvitek@csumb.edu | http://aquaticcommons.org/id/eprint/14907 | 403 | 2014-03-11 17:26:19 | 14907 | United States National Ocean Service
    Publication Date: 2021-06-28
    Description: Benthic food webs often derive a significant fraction of their nutrient inputs from phytoplankton in the overlying waters. If the phytoplankton include harmful algal species like Pseudo-nitzschia australis, a diatom capable of producing the neurotoxin domoic acid (DA), the benthic food web can become a depository for phycotoxins. We tested the general hypothesis that DA contaminates benthic organisms during local blooms of P. australis, a widespread toxin producer along the US west coast. To test for trophic transfer and uptake of DA into the benthic food web, we sampled 8 benthic species comprising 4 feeding groups: filter feeders (Emerita analoga and Urechis caupo); a predator (Citharichthys sordidus); scavengers (Nassarius fossatus and Pagurus samuelis) and deposit feeders (Neotrypaea californiensis, Dendraster excentricus and Olivella biplicata). Sampling occurred before, during and after blooms of P. australis in Monterey Bay, CA, USA during 2000 and 2001. DA was detected in all 8 species, with contamination persisting over variable time scales. Maximum DA levels in N. fossatus (674 ppm), E. analoga (278 ppm), C. sordidus (515 ppm), N. californiensis (145 ppm), P. samuelis (56 ppm), D. excentricus (15 ppm) and O. biplicata (3 ppm) coincided with P. australis blooms, while DA levels in U. caupo remained above 200 ppm (max. = 751 ppm) throughout the study period. DA in 6 species exceeded levels thought to be safe for higher level consumers (i.e. ≥20 ppm) and thus is likely to have deleterious effects on marine birds, sea lions and the endangered California sea otter, known to prey upon these benthic species.
    Keywords: Chemistry ; Fisheries ; Pollution
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    Format: application/pdf
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    In:  cooperge@musc.edu | http://aquaticcommons.org/id/eprint/14914 | 403 | 2014-03-10 17:55:40 | 14914 | United States National Ocean Service
    Publication Date: 2021-06-28
    Description: The Hedgehog signaling pathway is essential for embryogenesis and for tissue homeostasis in the adult. However, it may induce malignancies in a number of tissues when constitutively activated, and it may also have a role in other forms of normal and maladaptive growth. Cyclopamine, a naturally occurring steroidal alkaloid, specifically inhibits the Hedgehog pathway by binding directly to Smoothened, an important Hedgehog response element. To use cyclopamine as a tool to explore and/or inhibit the Hedgehog pathway in vivo, a substantial quantity is required, and as a practical matter cyclopamine has been effectively unavailable for usage in animals larger than mice.
    Description: Article includes 6 pages.
    Keywords: Chemistry ; Ecology ; Fisheries
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    Format: application/pdf
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    In:  http://aquaticcommons.org/id/eprint/15043 | 403 | 2014-05-27 14:14:30 | 15043 | United States National Marine Fisheries Service
    Publication Date: 2021-07-01
    Description: Twenty-six stocks of Pacific salmon and trout (Oncorhynchus spp.), representing evolutionary significant units (ESU), are listed as threatened or endangered under the Endangered Species Act (ESA) and six more stocks are currently being evaluated for listing. The ecological and economic consequences of these listings are large; therefore considerable effort has been made to understand and respond to these declining populations. Until recently, Pacific harbor seals (Phoca vitulina richardsi) on the west coast increased an average of 5% to 7% per year as a result of the Marine Mammal Protection Act of 1972 (Brown and Kohlman2). Pacific salmon are seasonally important prey for harbor seals (Roffe and Mate, 1984; Olesiuk, 1993); therefore quantifying and understanding the interaction between these two protected species is important for Morphobiologically sound management strategies. Because some Pacific salmonid species in a given area may be threatened or endangered, while others are relatively abundant, it is important to distinguish the species of salmonid upon which the harbor seals are preying. This study takes the first step in understanding these interactions by using molecular genetic tools for species-level identification of salmonid skeletal remains recovered from Pacific harbor seal scats.
    Keywords: Chemistry ; Ecology ; Fisheries
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    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 213-220
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14637 | 403 | 2014-02-23 00:18:47 | 14637 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Coastal and marine ecosystems support diverse and important fisheries throughout the nation’s waters, hold vast storehouses of biological diversity, and provide unparalleled recreational opportunities. Some 53% of the total U.S. population live on the 17% of land in the coastal zone, and these areas become more crowded every year. Demands on coastal and marine resources arerapidly increasing, and as coastal areas become more developed, the vulnerability of human settlements to hurricanes, storm surges, and flooding events also increases.Coastal and marine environments are intrinsically linked to climate in many ways. The ocean is an important distributor of the planet’s heat, and this distribution could be strongly influenced by changes in global climate over the 21st century. Sea-level rise is projected to accelerate during the 21st century, with dramatic impacts in low-lying regions where subsidence and erosion problems already exist. Many other impacts of climate change on the oceans are difficult to project, such as the effects on ocean temperatures and precipitation patterns, although the potential consequences of various changes can be assessed to a degree. In other instances, research is demonstrating that global changes may already be significantly impacting marine ecosystems, such as the impact of increasing nitrogen on coastal waters and the direct effect of increasing carbon dioxide on coral reefs.Coastal erosion is already a widespread problem in much of the country and has significant impacts on undeveloped shorelines as well as on coastal development and infrastructure. Along the Pacific Coast, cycles of beach and cliff erosion have been linked to El Niño events that elevate average sea levels over the short term and alter storm tracks that affect erosion and wave damage along thecoastline. These impacts will be exacerbated by long-term sea-level rise. Atlantic and Gulf coastlines are especially vulnerable to long-term sea-level rise as well as any increase in the frequency of storm surges or hurricanes. Most erosion events here are the result of storms and extreme events, and the slope of these areas is so gentle that a small rise in sea level produces a large inland shiftof the shoreline. When buildings, roads and seawalls block this natural migration, the beaches and shorelines erode, threatening property and infrastructure as well as coastal ecosystems.
    Keywords: Ecology ; Environment ; Fisheries ; Management
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
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    Publication Date: 2021-06-30
    Description: In this report we analyze the Topic 5 report’s recommendations for reducing nitrogen losses to the Gulf ofMexico (Mitsch et al. 1999). We indicate the relative costs and cost-effectiveness of different control measures, and potential benefits within the Mississippi River Basin. For major nonpoint sources, such as agriculture, we examine both national and basin costs and benefits.Based on the Topic 2 economic analysis (Diaz and Solow 1999), the direct measurable dollar benefits to Gulf fisheries of reducing nitrogen loads from the Mississippi River Basin are very limited at best. Although restoring the ecological communities in the Gulf may be significant over the long term, we do not currently have information available to estimate the benefits of such measures to restore the Gulf’s long-term health. For these reasons, we assume that measures to reduce nitrogen losses to the Gulf will ultimately prove beneficial, and we concentrate on analyzing the cost-effectiveness of alternative reduction strategies.We recognize that important public decisions are seldom made on the basis of strict benefit–cost analysis, especially when complete benefits cannot be estimated. We look at different approaches and different levels of these approaches to identify those that are cost-effective and those that have limited undesirable secondary effects, such as reduced exports, which may result in lost market share.We concentrate on the measures highlighted in the Topic 5 report, and also are guided by the source identification information in the Topic 3 report (Goolsby et al. 1999). Nonpoint sources that are responsible for the bulk of the nitrogen receive most of our attention. We consider restrictions on nitrogen fertilizer levels, and restoration of wetlands and riparian buffers for denitrification. We also examine giving more emphasis to nitrogen control in regions contributing a greater share of the nitrogen load.
    Keywords: Ecology ; Environment ; Fisheries ; Management
    Repository Name: AquaDocs
    Type: monograph
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    Publication Date: 2021-06-30
    Description: The overall goal of this assessment was to evaluate the effects of nutrient-source reductions that may be implemented in the Mississippi River Basin (MRB) to reduce the problem of low oxygen conditions (hypoxia) in the nearshore Gulf of Mexico. Such source reductions would affect the quality of surface waters—streams, rivers, and reservoirs—in the drainage basin itself, as well as nearshore Gulf waters. The task group’s work was divided into addressing the effects of nutrient-source reductions on: (1) surface waters in the MRB and (2) hypoxia in the Gulf of Mexico.
    Keywords: Ecology ; Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14639 | 403 | 2014-02-23 00:19:20 | 14639 | United States National Ocean Service
    Publication Date: 2021-06-30
    Keywords: Ecology ; Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14641 | 403 | 2014-02-24 00:14:08 | 14641 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Ths report addresses the following two questions:1) What are the loads (flux) of nutrients transported from the Mississippi-Atchafalaya River Basin to the Gulf of Mexico, and where do they come from within the basin?2) What is the relative importance of specific human activities, such as agriculture, point-source discharges, and atmospheric deposition in contributing to these loads?These questions were addressed by first estimating the flux of nutrients from the Mississippi-Atchafalaya River Basin and about 50 interior basins in the Mississippi River system using measured historical streamflow and water quality data. Annual nutrient inputs and outputs to each basin were estimated using data from the National Agricultural Statistics Service, National Atmospheric Deposition Program, and point-source data provided by the USEPA. Next, a nitrogen mass balance was developed using agricultural statistics, estimates of nutrient cycling in agricultural systems, and a geographic information system. Finally, multiple regression models were developed to estimate the relative contributions of the major input sources to the flux of nitrogen and phosphorus to the Gulfof Mexico.
    Keywords: Ecology ; Environment ; Fisheries ; Management
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  • 66
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14643 | 403 | 2014-02-24 00:12:08 | 14643 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Nutrient overenrichment from human activities is one of the major stresses affecting coastal ecosystems. There is increasing concern in many areas around the world that an oversupply of nutrients from multiple sources is having pervasive ecological effects on shallow coastal and estuarine areas. These effects include reduced light penetration, loss of aquatic habitat, harmfid algal blooms, a decrease in dissolved oxygen (or hypoxia), and impacts on living resources. The largest zone of oxygen-depleted coastal waters in the United States, and the entire western Atlantic Ocean, is found in the northern Gulf of Mexico on the Louisiana-Texas continental shelf. This zone is influenced by the freshwater discharge and nutrient flux of the Mississippi River system.This report describes the seasonal, interannual, and long-term variability in hypoxia in the northern Gulf of Mexico and its relationship to nutrient loading. It also documents the relative roles of natural and human-induced factors in determining the size and duration of the hypoxic zone.
    Keywords: Ecology ; Environment ; Fisheries ; Management
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  • 67
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14645 | 403 | 2014-02-24 00:11:18 | 14645 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: The continental shelf adjacent to the Mississippi River is a highly productive system, often referred to as the fertile fisheries crescent. This productivity is attributed to the effects of the river, especially nutrient delivery. In the later decades of the 2oth century, though, changes in the system were becoming evident. Nutrient loads were seen to be increasing and reports of hypoxia were becoming more frequent.During most recent summers, a broad area (up to 20,000 krn2) of near bottom, inner shelf waters immediately west of the Mississippi River delta becomes hypoxic (dissolved oxygen concentrations less than 2 mgll). In 1990, the Coastal Ocean Program of the National Oceanic and Atmospheric Administration initiated the Nutrient Enhanced Coastal Ocean Productivity (NECOP) study of this area to test the hypothesis that anthropogenic nutrient addition to the coastal ocean has contributed to coastal eutrophication with a significant impact on water quality. Three major goals of the study were to determine the degree to which coastal productivity in the region is enhanced by terrestrial nutrient input, to determine the impact of enhanced productivity on water quality, and to determine the fate of fixed carbon and its impact on living marineresources. The study involved 49 federal and academic scientists from 14 institutions and cost $9.7 million. Field work proceeded from 1990 through 1993 and analysis through 1996, although some analyses continue to this day.The Mississippi River system delivers, on average, 19,000 m3/s of water to the northern Gulf of Mexico. The major flood of the river system occurs in spring following snow melt in the upper drainage basin. This water reaches the Gulf of Mexico through the Mississippi River birdfootdelta and through the delta of the Atchafalaya River. Much of this water flows westward along the coast as a highly stratified coastal current, the Louisiana Coastal Current, isolated from the bottom by a strong halocline and from mid-shelf waters by a strong salinity front. This stratification maintains dissolved and particulate matter from the rivers, as well as recycled material, in a well-defined flow over the inner shelf. It also inhibits the downward mixing of oxygenated surface waters from the surface layer to the near bottom waters. This highlystratified flow is readily identifiable by its surface turbidity, as it carries much of the fine material delivered with the river discharge and resuspended by nearshore wave activity. A second significant contribution to the turbidity of the surface waters is due to phytoplankton in these waters. This turbidity reduces the solar radiation penetrating to depth through the watercolumn. These two aspects of the coastal current, isolation of the inner shelf surface waters and maintenance of a turbid surface layer, precondition the waters for the development of near bottom summer hypoxia.
    Keywords: Ecology ; Environment ; Fisheries ; Health
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  • 68
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14642 | 403 | 2014-02-24 00:13:08 | 14642 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: In this report we have attempted to evaluate the ecological and economic consequences of hypoxia in the northern Gulf of Mexico. Although our initial approach was to rely on published accounts, we quickly realized that the body of published literature deahng with hypoxia was limited,and we would have to conduct our own exploratory analysis of existing Gulf data, or rely on published accounts from other systems to infer possible or potential effects of hypoxia.For the economic analysis, we developed a conceptual model of how hypoxia-related impacts could affect fisheries. Our model included both supply and demand components. The supplymodel had two components: (1) a physical production function for fish or shrimp, and (2) the cost of fishing. If hypoxia causes the cost of a unit of fishing effort to change, then this will result in a shift in supply. The demand model considered how hypoxia might affect the quality of landed fish or shrimp. In particular, the market value per pound is lower for small shrimp thanfor large shrimp.Given the limitations of the ecological assessment, the shallow continental shelf area affected by hypoxia does show signs of hypoxia-related stress. While current ecological conditions are a response to a variety of stressors, the effects of hypoxia are most obvious in the benthos that experience mortality, elimination of larger long-lived species, and a shifting of productivity to nonhypoxic periods (energy pulsing). What is not known is whether hypoxia leads to higher productivity during productive periods, or simply to a reduction of productivity during oxygen-stressed periods.The economic assessment based on fisheries data, however, failed to detect effects attributable to hypoxia. Overall, fisheries landings statistics for at least the last few decades have been relatively constant. The failure to identify clear hypoxic effects in the fisheries statistics does not necessarily mean that they are absent. There are several possibilities: (1) hypoxic effects are small relative to the overall variability in the data sets evaluated; (2) the data and the power of the analyses are not adequate; and (3) currently there are no hypoxic effects on fisheries.Lack of identified hypoxic effects in available fisheries data does not imply that effects would not occur should conditions worsen. Experience with other hypoxic zones around the globe shows that both ecological and fisheries effects become progressively more severe as hypoxia increases. Several large systems around the globe have suffered serious ecological and economic consequencesfrom seasonal summertime hypoxia; most notable are the Kattegat and Black Sea. The consequences range from localized loss of catch and recruitment failure to complete system-wide loss of fishery species. If experiences in other systems are applicable to the Gulf of Mexico, thenin the face of worsening hypoxic conditions, at some point fisheries and other species will decline, perhaps precipitously.
    Keywords: Environment ; Fisheries ; Management
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  • 69
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14653 | 403 | 2014-02-26 20:06:52 | 14653 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: There is nothing mysterious about how coastal rivers, their estuaries, and their relationship with the sea all work to satisfy many of our greatest needs, including drinkable water, fish and shellfish, and soils essential for sustaining the production of food and fiber. Nor are the methods that have proved successful in the protection andrestoration of watershed health difficult to understand. It is difficult, however, to imagine how we are to survive without healthy watersheds. Each watershed alongCalifornia’s coast shows signs of increasing abuse from road construction and maintenance, livestock grazing, residential development, timber harvesting, and a dozen other human activities. In some cases whole streams have simply been wiped away.This document has been created to guide and support every person in the community, from homemaker to elected official, who wants her or his watershed to provide cleanwater, harvestable fish resources and other proof that life in the watershed cannot only be maintained but also enjoyed. It is based on years of experience with watershedprotection and restoration in California. If citizen involvement is to be effective, it must draw not only on scientific knowledge but also on an understanding of how totranslate individual views into commitments and capable group action.This guide briefly reviews the condition of California’s coastal watersheds, identifies the kinds of concerns that have led citizens to successful watershed protection efforts, explains why citizen, in addition to government, effort is essential for watershed protection and restoration to succeed, and puts in the reader’s hands both the technical and organizational “tools of the trade” in the hope that those who use this guide will be encouraged to join in efforts to make their watershed serve this and future generations better.
    Keywords: Ecology ; Environment ; Fisheries ; Management
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  • 70
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14650 | 403 | 2014-02-24 00:09:16 | 14650 | United States National Ocean Service
    Publication Date: 2021-06-30
    Description: Over the past one hundred and fifty years, the landscape and ecosystems of the Pacific Northwest coastal region, already subject to many variable natural forces, have been profoundly affected by human activities. In virtually every coastal watershed from the Strait of Juan de Fuca to CapeMendocino, settlement, exploitation and development of resou?-ces have altered natural ecosystems. Vast, complex forests that once covered the region have been largely replaced by tree plantations or converted to non-forest conditions. Narrow coastal valleys, once filled withwetlands and braided streams that tempered storm runoff and provided salmon habitat, were drained, filled, or have otherwise been altered to create land for agriculture and other uses. Tideflats and saltmarshes in both large and small estuaries were filled for industrial, commercial,and other urban uses. Many estuaries, including that of the Columbia River, have been channeled, deepened, and jettied to provide for safe, reliable navigation. The prodigious rainfall in the region, once buffered by dense vegetation and complex river and stream habitat, now surges down sirfiplified stream channels laden with increased burdens of sediment and debris. Although these and many other changes have occurred incrementally over time and in widely separated areas, their sum can now be seen to have significantly affected the natural productivity of theregion and, as a consequence, changed the economic structure of its human communities. This activity has taken place in a region already shaped by many interacting and dynamic natural forces. Large-scale ocean circulation patterns, which vary over long time periods, determine the strength and location of currents along the coast, and thus affect conditions in the nearshoreocean and estuaries throughout the region. Periodic seasonal differences in the weather and ocean act on shorter time scales; winters are typically wet with storms from the southwest while summers tend to be dry with winds from the northwest. Some phenomena are episodic, such asEl Nifio events, which alter weather, marine habitats, and the distribution and survival of marine organisms. Other oceanic and atmospheric changes operate more slowly; over time scales of decades, centuries, and longer. Episodic geologic events also punctuate the region, such asvolcanic eruptions that discharge widespread blankets of ash, frequent minor earthquakes, and major subduction zone earthquakes each 300 to 500 years that release accumulated tectonic strain, dropping stretches of ocean shoreline, inundating estuaries and coastal valleys, and triggering landslides that reshape stream profiles. While these many natural processes have altered, sometimes dramatically, the Pacific Northwest coastal region, these same processes haveformed productive marine and coastal ecosystems, and many of the species in these systems have adapted to the variable environmental conditions of the region to ensure their long-term survival.
    Keywords: Biology ; Ecology ; Environment ; Fisheries
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  • 71
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14652 | 403 | 2014-02-24 00:07:14 | 14652 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: A significant fraction of the total nitrogen entering coastal and estuarine ecosystems along the eastern U.S. coast arises from atmospheric deposition; however, the exact role of atmospherically derived nitrogen in the decline of the health of coastal, estuarine, and inland waters is still uncertain. From the perspective of coastal ecosystem eutrophication, nitrogen compounds from the air, along with nitrogen from sewage, industrial effluent, and fertilizers, become a source of nutrients to the receiving ecosystem. Eutrophication, however, is only one of the detrimental impacts of the emission of nitrogen containing compounds to the atmosphere. Other adverse effects include the production of tropospheric ozone, acid deposition, and decreased visibility (photochemical smog).Assessments of the coastal eutrophication problem indicate that the atmospheric deposition loading is most important in the region extending from Albemarle/Parnlico Sounds to the Gulf of Maine; however, these assessments are based on model outputs supported by a meager amount of actual data. The data shortage is severe. The National Research Council specifically mentions the atmospheric role in its recent publication for the Committee on Environmental and NaturalResources, Priorities for Coastal Ecosystem Science (1994). It states that, "Problems associated with changes in the quantity and quality of inputs to coastal environments from runoff and atmospheric deposition are particularly important [to coastal ecosystem integrity]. These includenutrient loading from agriculture and fossil fuel combustion, habitat losses from eutrophication, widespread contamination by toxic materials, changes in riverborne sediment, and alteration of coastal hydrodynamics. "
    Keywords: Atmospheric Sciences ; Ecology ; Environment
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  • 72
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14657 | 403 | 2014-02-26 20:12:26 | 14657 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: Professionals who are responsible for coastal environmental and natural resource planning and management have a need to become conversant with new concepts designed to provide quantitative measures of the environmental benefits of natural resources. These amenities range from beaches to wetlands to clean water and other assets that normally are not bought and sold in everyday markets.At all levels of government — from federal agencies to townships and counties — decisionmakers are being asked to account for the costs and benefits of proposed actions. To non-specialists, the tools of professional economists are often poorly understood and sometimes inappropriatefor the problem at hand. This handbook is intended to bridge this gap.The most widely used organizing tool for dealing with natural and environmental resource choices is benefit-cost analysis — it offers a convenient way to carefully identify and array, quantitatively if possible, the major costs, benefits, and consequences of a proposed policy or regulation.The major strength of benefit-cost analysis is not necessarily the predicted outcome, which depends upon assumptions and techniques, but the process itself, which forces an approach to decision-making that is based largely on rigorous and quantitative reasoning.However, a major shortfall of benefit-cost analysis has been the difficulty of quantifying both benefits and costs of actions that impact environmental assets not normally, nor even regularly, bought and sold in markets. Failure to account for these assets, to omit them from the benefit-costequation, could seriously bias decisionmaking, often to the detriment of the environment. Economists and other social scientists have put a great deal of effort into addressing this shortcoming by developing techniques to quantify these non-market benefits.The major focus of this handbook is on introducing and illustrating concepts of environmental valuation, among them Travel Cost models and Contingent Valuation. These concepts, combined with advances in natural sciences that allow us to better understand how changes in the naturalenvironment influence human behavior, aim to address some of the more serious shortcomings in the application of economic analysis to natural resource and environmental management and policy analysis.Because the handbook is intended for non-economists, it addresses basic concepts of economic value such as willingness-to-pay and other tools often used in decision making such as costeffectiveness analysis, economic impact analysis, and sustainable development. A number of regionally oriented case studies are included to illustrate the practical application of these concepts and techniques.
    Keywords: Biology ; Ecology ; Environment ; Fisheries
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  • 73
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14656 | 403 | 2014-02-26 20:11:03 | 14656 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: Professionals who are responsible for coastal environmental and natural resource planning and management have a need to become conversant with new concepts designed to provide quantitative measures of the environmental benefits of natural resources. These amenities range from beaches to wetlands to clean water and other assets that normally are not bought and sold in everyday markets.At all levels of government — from federal agencies to townships and counties — decisionmakers are being asked to account for the costs and benefits of proposed actions. To non-specialists, the tools of professional economists are often poorly understood and sometimes inappropriatefor the problem at hand. This handbook is intended to bridge this gap.The most widely used organizing tool for dealing with natural and environmental resource choices is benefit-cost analysis — it offers a convenient way to carefully identify and array, quantitatively if possible, the major costs, benefits, and consequences of a proposed policy or regulation.The major strength of benefit-cost analysis is not necessarily the predicted outcome, which depends upon assumptions and techniques, but the process itself, which forces an approach to decision-making that is based largely on rigorous and quantitative reasoning.However, a major shortfall of benefit-cost analysis has been the difficulty of quantifying both benefits and costs of actions that impact environmental assets not normally, nor even regularly, bought and sold in markets. Failure to account for these assets, to omit them from the benefit-costequation, could seriously bias decisionmaking, often to the detriment of the environment. Economists and other social scientists have put a great deal of effort into addressing this shortcoming by developing techniques to quantify these non-market benefits.The major focus of this handbook is on introducing and illustrating concepts of environmental valuation, among them Travel Cost models and Contingent Valuation. These concepts, combined with advances in natural sciences that allow us to better understand how changes in the naturalenvironment influence human behavior, aim to address some of the more serious shortcomings in the application of economic analysis to natural resource and environmental management and policy analysis.Because the handbook is intended for non-economists, it addresses basic concepts of economic value such as willingness-to-pay and other tools often used in decision making such as costeffectiveness analysis, economic impact analysis, and sustainable development. A number of regionally oriented case studies are included to illustrate the practical application of these concepts and techniques.
    Keywords: Environment ; Management ; Policies
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14655 | 403 | 2014-02-26 20:09:47 | 14655 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: What Are ~umulat iveE ffects?Coastal managers now recognize that many of the most serious resource degradation problems have built up gradually as the combined outcome of numerous actions and choices which alone may have had relatively minor impacts. For example, alteration of essential habitat throughwetland loss, degradation of water quality from nonpoint source pollution, and changes in salinity of estuarine waters from water diversion projects can be attributed to numerous small actions and choices. These incremental losses have broad spatial and temporal dimensions,resulting in the gradual alteration of structure and functioning of biophysical systems. In the environmental management field, the term "cumulative effects" is generally used to describe this phenomenon of changes in the environment that result from numerous, small-scale alterations.
    Keywords: Biology ; Ecology ; Environment ; Fisheries ; Management
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  • 75
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14659 | 403 | 2014-02-26 20:15:33 | 14659 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: Extensive losses of coastal wetlands in the United States caused by sea-level rise, land subsidence, erosion, and coastal development have increased hterest in the creation of salt marshes within estuaries. Smooth cordgrass Spartina altemiflora is the species utilized most for salt marsh creation and restoration throughout the Atlantic and Gulf coasts of the U.S., while S. foliosa and Salicomia virginica are often used in California. Salt marshes have many valuable functions such as protecting shorelines from erosion, stabilizing deposits of dredged material, dampening flood effects, trapping water-born sediments, serving as nutrient reservoirs, acting as tertiary watertreatment systems to rid coastal waters of contaminants, serving as nurseries for many juvenile fish and shellfish species, and serving as habitat for various wildlife species(Kusler and Kentula 1989). The establishment of vegetation in itself is generally sufficient to provide the functions of erosion control, substrate stabilization, and sediment trapping. The development of other salt marsh functions, however, is more difficult to assess. For example, natural estuarine salt marshes support a wide variety of fish and shellfish, and the abundance of coastal marshes has been correlated with fisheries landings (Turner 1977, Boesch and Turner 1984). Marshes function for aquatic species by providing breeding areas, refuges from predation, and rich feeding grounds (Zimmerman and Minello 1984, Boesch and Turner 1984, Kneib 1984, 1987, Minello and Zimmerman 1991). However, the relative value of created marshes versus that of natural marshes for estuarine animals has been questioned (Carnmen 1976, Race and Christie 1982, Broome 1989, Pacific Estuarine Research Laboratory 1990, LaSalle et al. 1991, Minello and Zimmerman 1992, Zedler 1993). Restoration of all salt marsh functions is necessary to prevent habitat creation and restoration activities from having a negative impact on coastal ecosystems.
    Keywords: Ecology ; Environment ; Fisheries
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  maria.dillard@noaa.gov | http://aquaticcommons.org/id/eprint/14677 | 403 | 2014-02-24 20:50:31 | 14677 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: The intersection of social and environmental forces is complex in coastal communities. The well-being of a coastal community is caught up in the health of its environment, the stability of its economy, the provision of services to its residents, and a multitude of other factors. With this in mind, the project investigators sought to develop an approach that would enable researchers to measure these social and environmental interactions. The concept of well-being proved extremely useful for this purpose. Using the Gulf of Mexico as a regional case study, the research team developed a set of composite indicators to be used for monitoring well-being at the county-level. The indicators selected for the study were: Social Connectedness, Economic Security, Basic Needs, Health, Access to Social Services, Education, Safety, Governance, and Environmental Condition. For each of the 37 sample counties included in the study region, investigators collected and consolidated existing, secondary data representing multiple aspects of objective well-being. To conduct a longitudinal assessment of changing wellbeing and environmental conditions, data were collected for the period of 2000 to 2010. The team focused on the Gulf of Mexico because the development of a baseline of well-being would allow NOAA and other agencies to better understand progress made toward recovery in communities affected by the Deepwater Horizon oil spill. However, the broader purpose of the project was to conceptualize and develop an approach that could be adapted to monitor how coastal communities are doing in relation to a variety of ecosystem disruptions and associated interventions across all coastal regions in the U.S. and its Territories. The method and models developed provide substantial insight into the structure and significance of relationships between community well-being and environmental conditions. Further, this project has laid the groundwork for future investigation, providing a clear path forward for integrated monitoring of our nation’s coasts. The research and monitoring capability described in this document will substantially help counties, local organizations, as well state and federal agencies that are striving to improve all facets of community well-being.
    Keywords: Environment ; Sociology
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    Publication Date: 2021-07-01
    Description: With the global proliferation of toxic Harmful Algal Bloom (HAB) species, there is a need to identify the environmental and biological factors that regulate toxin production. One such species, Karenia brevis, forms nearly annual blooms that threaten coastal regions throughout the Gulf of Mexico. This dinoflagellate produces brevetoxins, potent neurotoxins that cause neurotoxic shellfish poisoning and respiratory illness in humans, as well as massive fish kills. A recent publication reported that a rapid decrease in salinity increased cellular toxin quotas in K. brevis and hypothesized that brevetoxins serve a role in osmoregulation. This finding implied that salinity shifts could significantly alter the toxic impacts of blooms. We repeated the original experiments separately in three different laboratories and found no evidence for increased brevetoxin production in response to low-salinity stress in any of the eight K. brevis strains we tested, including three used in the original study. Thus, we find no support for an osmoregulatory function of brevetoxins. The original publication also stated that there was no known cellular function for brevetoxins. However, there is increasing evidence that brevetoxins promote survival of the dinoflagellates by deterring grazing by zooplankton. Whether they have other as yet unidentified cellular functions is currently unknown.
    Keywords: Chemistry ; Fisheries ; Pollution
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    In:  http://aquaticcommons.org/id/eprint/14672 | 403 | 2014-02-26 20:33:40 | 14672 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: Dinoflagellates possess many physiological processes that appear to be under post-transcriptional control. However, the extent to which their genes are regulated post-transcriptionally remains unresolved. To gain insight into the roles of differential mRNA stability and de novo transcription in dinoflagellates, we biosynthetically labeled RNA with 4-thiouracil to isolate newly transcribed and pre-existing RNA pools in Karenia brevis. These isolated fractions were then used for analysis of global mRNA stability and de novo transcription by hybridization to a K. brevis microarray. Global K. brevis mRNA half-lives were calculated from the ratio of newly transcribed to pre-existing RNA for 7086 array features using the online software HALO (Half-life Organizer). Overall, mRNA half-lives were substantially longer than reported in other organisms studied at the global level, ranging from 42 minutes to greater than 144 h, with a median of 33 hours. Consistent with well-documented trends observed in other organisms, housekeeping processes, including energy metabolism and transport, were significantly enriched in the most highly stable messages. Shorter-lived transcripts included a higher proportion of transcriptional regulation, stress response, and other response/regulatory processes. One such family of proteins involved in post-transcriptional regulation in chloroplasts and mitochondria, the pentatricopeptide repeat (PPR) proteins, had dramatically shorter half-lives when compared to the arrayed transcriptome. As transcript abundances for PPR proteins were previously observed to rapidly increase in response to nutrient addition, we queried the newly synthesized RNA pools at 1 and 4 h following nitrate addition to N-depleted cultures. Transcriptome-wide there was little evidence of increases in the rate of de novo transcription during the first 4 h, relative to that in N-depleted cells, and no evidence for increased PPR protein transcription. These results lend support to the growing consensus of post-transcriptional control of gene expression in dinoflagellates.
    Keywords: Chemistry ; Fisheries
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14678 | 403 | 2014-02-24 20:59:15 | 14678 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: This report is the second in a series from a project to assess land-based sources of pollution (LBSP) and effects in the St. Thomas East End Reserves (STEER) in St. Thomas, USVI, and is the result of a collaborative effort between NOAA’s National Centers for Coastal Ocean Science, the USVI Department of Planning and Natural Resources, the University of the Virgin Islands, and The Nature Conservancy.Passive water samplers (POCIS) were deployed in the STEER in February 2012. Developed by the US Geological Survey(USGS) as a tool to detect the presence of water solublecontaminants in the environment, POCIS samplers were deployed in the STEER at five locations. In addition to the February 2012 deployment, the results from an earlier POCIS deployment in May 2010 in Turpentine Gut, a perennial freshwater stream which drains to the STEER, are also reported.A total of 26 stormwater contaminants were detected at least once during the February 2012 deployment in the STEER. Detections were high enough to estimate ambient water concentrations for nine contaminants using USGS sampling rate values. From the May 2010 deployment in Turpentine Gut, 31 stormwater contaminants were detected, and ambient water concentrations could be estimated for 17 compounds.Ambient water concentrations were estimated for a numberof contaminants including the detergent/surfactant metabolite 4-tert-octylphenol, phthalate ester plasticizers DEHP and DEP, bromoform, personal care products including menthol, indole, n,n-diethyltoluamide (DEET), along with the animal/plant sterol cholesterol, and the plant sterol beta-sitosterol. Only DEHP appeared to have exceeded a water quality guideline for the protection of aquatic organisms.
    Keywords: Chemistry ; Environment ; Pollution
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14679 | 403 | 2014-02-24 19:16:48 | 14679 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: This report contains a chemical and biological characterization of sediments from the St. Thomas East End Reserves (STEER) in St. Thomas, U.S. Virgin Islands (USVI). The STEER Management Plan (published in 2011) identified chemical contaminants and habitat loss as high or very high threats and called for a characterization of chemical contaminants as well as an assessment of their effects on natural resources. The baseline information contained in this report on chemical contaminants, toxicity and benthic infaunal community composition can be used to assess current conditions, as well as the efficacy of future restoration activities. In this phase of the project, 185 chemical contaminants, including a number of organic (e.g., hydrocarbons and pesticides) and inorganic (e.g., metals) compounds, were analyzed from 24 sites in the STEER. Sediments were also analyzed using a series of toxicity bioassays, including amphipod mortality, sea urchin fertilization impairment, and the cytochrome P450 Human Reporter Gene System (HRGS), along with a characterization of the benthic infaunal community. Higher levels of chemical contaminants were found in Mangrove Lagoon and Benner Bay in the western portion of the study area than in the eastern area. The concentrations of polychlorinated biphenyls (PCBs), DDT (dichlorodiphenyltrichloroethane), chlordane, zinc, copper, lead and mercury were above a NOAA sediment quality guideline at one or more sites, indicating impacts may be present in more sensitive species or life stages in the benthic environment. Copper at one site in Benner Bay, however, was above a NOAA guideline indicating that effects on benthic organisms were likely. The antifoulant boat hull ingredient tributyltin, or TBT, was found at the third highest concentration in the history of NOAA’s National Status and Trends (NS&T) Program, which monitors the Nation’s coastal and estuarine waters for chemical contaminants and bioeffects. Unfortunately, there do not appear to be any established sediment quality guidelines for TBT. Results of the bioassays indicated significant sediment toxicity in Mangrove Lagoon and Benner Bay using multiple tests. The benthic infaunal communities in Mangrove Lagoon and Benner Bay appeared severely diminished.
    Keywords: Chemistry ; Environment ; Pollution
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14681 | 403 | 2014-02-26 21:08:41 | 14681 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: Washington depends on a healthy coastal and marine ecosystem to maintain a thriving economy and vibrant communities. These ecosystems support critical habitats for wildlife and a growing number of often competing ocean activities, such as fishing, transportation, aquaculture, recreation, and energy production. Planners, policy makers and resource managers are being challenged to sustainably balance ocean uses, and environmental conservation in a finite space and with limited information. This balancing act can be supported by spatial planning.Marine spatial planning (MSP) is a planning process that enables integrated, forward looking, and consistent decision making on the human uses of the oceans and coasts. It can improve marine resource management by planning for human uses in locations that reduce conflict, increase certainty, and support a balance among social, economic, and ecological benefits we receive from ocean resources.In March 2010, the Washington state legislature enacted a marine spatial planning law (RCW §43.372) to address resource use conflicts in Washington waters. In 2011, a report to the legislature and a workshop on human use data provided guidance for the marine spatial planning process. The report outlines a set of recommendations for the State to effectively undertake marine spatial planning and this work plan will support some of these recommendations, such as: federal integration, regional coordination, developing mechanisms to integrate scientific and technical expertise, developing data standards, and accessing and sharing spatial data.In 2012 the Governor amended the existing law to focus funding on mapping and ecosystem assessments for Washington’s Pacific coast and the legislature provided $2.1 million in funds to begin marine spatial planning off Washington’s coast. The funds are appropriated through the Washington Department of Natural Resources Marine Resources Stewardship Account with coordination among the State Ocean Caucus, the four Coastal Treaty Tribes, four coastal Marine Resource Committees and the newly formed stakeholder body, the Washington Coastal Marine Advisory Council.
    Keywords: Ecology ; Environment ; Planning
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    NOAA/National Ocean Service | Miami, FL
    In:  http://aquaticcommons.org/id/eprint/14683 | 403 | 2014-02-24 22:55:04 | 14683 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: The overall goal of the MARES (MARine and Estuarine goal Setting) project for South Florida is “to reach a science-based consensus about the defining characteristics and fundamental regulating processes of a South Florida coastal marine ecosystem that is both sustainable and capable of providing the diverse ecosystem services upon which our society depends.” Through participation in a systematic process of reaching such a consensus, science can contribute more directly and effectively to the critical decisions being made both by policy makers and by natural resource and environmental management agencies. The document that follows briefly describes MARES overall and this systematic process. It then describes in considerable detail the resulting output from the first step in the process, the development of an Integrated ConceptualEcosystem Model (ICEM) for the third subregion to be addressed by MARES, the Southeast Florida Coast (SEFC). What follows with regard to the SEFC relies upon the input received from more than 60 scientists, agency resource managers, and representatives of environmental organizations during workshops held throughout 2009–2012 in South Florida.
    Description: NOAA Technical Memorandum OAR-AOML-103
    Keywords: Ecology ; Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Beaufort, NC
    In:  http://aquaticcommons.org/id/eprint/14685 | 403 | 2014-02-24 23:06:55 | 14685 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: Technological innovation has made it possible to grow marine finfish in the coastal and open ocean. Along with this opportunity comes environmental risk. As a federal agency charged with stewardship of the nation’s marine resources, the National Oceanic and Atmospheric Administration (NOAA) requires tools to evaluate the benefits and risks that aquaculture poses in the marine environment, to implement policies and regulations which safeguard our marine and coastal ecosystems, and to inform production designs and operational procedures compatible with marine stewardship.There is an opportunity to apply the best available science and globally proven best management practices to regulate and guide a sustainable United States (U.S.) marine finfish farming aquaculture industry. There are strong economic incentives to develop this industry, and doing so in an environmentally responsible way is possible if stakeholders, the public and regulatory agencies have a clear understanding of the relative risks to the environment and the feasible solutions to minimize, manage or eliminate those risks. This report spans many of the environmental challenges that marine finfish aquaculture faces. We believe that it will serve as a useful tool to those interested in and responsible for the industry and safeguarding the health, productivity and resilience of our marine ecosystems.This report aims to provide a comprehensive review of some predominant environmental risks that marine fish cage culture aquaculture, as it is currently conducted, poses in the marine environment and designs and practices now in use to address these environmental risks in the U.S. and elsewhere. Today’s finfish aquaculture industry has learned, adapted and improved to lessen or eliminate impacts to the marine habitats in which it operates. What progress has been made? What has been learned? How have practices changed and what are the results in terms of water quality, benthic, and other environmental effects? To answer these questions we conducted a critical review of the large body of scientific work published since 2000 on the environmental impacts of marine finfish aquaculture around the world. Our report includes results, findings and recommendations from over 420 papers, primarily from peer-reviewed professional journals. This report provides a broad overview of the twenty-first century marine finfish aquaculture industry, with a targeted focus on potential impacts to water quality, sediment chemistry, benthic communities, marine life and sensitive habitats. Other environmental issues including fish health, genetic issues, and feed formulation were beyond the scope of this report and are being addressed in other initiatives and reports. Also absent is detailed information about complex computer simulations that are used to model discharge, assimilation and accumulation of nutrient waste from farms. These tools are instrumental for siting and managing farms, and a comparative analysis of these models is underway by NOAA.
    Keywords: Aquaculture ; Environment ; Health ; Pollution
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    Publication Date: 2021-07-02
    Description: A study was conducted in June 2009 to assess the current status of ecological condition and potential human-health risks throughout subtidal estuarine waters of the Sapelo Island National Estuarine Research Reserve (SINERR) along the coast of Georgia. Samples were collected for multiple indicators of ecosystem condition, including water quality (dissolved oxygen, salinity, temperature, pH, nutrients and chlorophyll, suspended solids, fecal coliform bacteria and coliphages), sediment quality (granulometry, organic matter content, chemical contaminant concentrations), biological condition (diversity and abundance of benthic fauna, fish tissue contaminant levels and pathologies), and human dimensions (fish-tissue contaminant levels relative to human-health consumption limits, various aesthetic properties). Use of a probabilistic sampling design facilitated the calculation of statistics to estimate the spatial extent of the Reserve classified according to various categories (i.e., Good, Fair, Poor) of ecological condition relative to established thresholds of these indicators, where available.Overall, the majority of subtidal habitat in the SINERR appeared to be healthy, with over half (56.7 %) of the Reserve area having water quality, sediment quality, and benthic biological condition indicators rated in the healthy to intermediate range of corresponding guideline thresholds. None of the stations sampled had one or more indicators in all three categories rated as poor/degraded. While these results are encouraging, it should be noted that one or more indicators were rated as poor/degraded in at least one of the three categories over 40% of the Reserve study area, represented by 12 of the 30 stations sampled. Although measures of fish tissue chemical contamination were not included in any of the above estimates, a number of trace metals, pesticides, polybrominated diphenyl ethers (PBDEs), and polychlorinated biphenyls (PCBs) were found at low yet detectable levels in some fish at stations where fish were caught. Levels of mercury and total PCBs in some fish specimens fell within EPA guideline values considered safe, given a consumption rate of no more than four fish meals per month. Moreover, PCB congener profiles in sediments and fish in the SINERR exhibit a relative abundance of higher-chlorinated homologs which are uniquely characteristic of Aroclor 1268. It has been well-documented that sediments and fish in the creeks and marshes near the LCP Chemicals Superfund site, near Brunswick, Georgia, also display this congener pattern associated with Aroclor 1268, a highly chlorinated mixture of PCBs used extensively at a chlor-alkali plant that was in operation at the LCP site from 1955-1994. This report provides results suggesting that the protected habitats lying within the boundaries of the SINERR may be experiencing the effects of a legacy of chemical contamination at a site over 40km away. These effects, as well as other potential stressors associated with increased development of nearby coastal areas, underscore the importance of establishing baseline ecological conditions that can be used to track potential changes in the future and to guide management and stewardship of the otherwise relatively unspoiled ecosystems of the SINERR.
    Keywords: Ecology ; Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  Bryan.Costa@noaa.gov | http://aquaticcommons.org/id/eprint/14696 | 403 | 2014-02-25 19:33:12 | 14696 | United States National Ocean Service
    Publication Date: 2021-07-02
    Description: NOAA’s Center for Coastal Monitoring and Assessment’s Biogeography Branch has mapped and characterized large portions of the coral reef ecosystems inside the U.S. coastal and territorial waters, including the U.S. Caribbean. The complementary protocols used in these efforts have enabled scientists and managers to quantitatively compare different marine ecosystems in tropical U.S. waters. The Biogeography Branch used these same general protocols to generate three seamless habitat maps of the Bank/Shelf (i.e., from 0 ≤50 meters) and the Bank/Shelf Escarpment (i.e., from 50 ≤1,000 meters and from 1,000 ≤ 1,830 meters) inside Buck Island Reef National Monument (BIRNM). While this mapping effort marks the fourth time that the shallow-water habitats of BIRNM have been mapped, it is the first time habitats deeper than 30 meters (m) have been characterized. Consequently, this habitat map provides information on the distribution of mesophotic and deep-water coral reef ecosystems and serves as a spatial baseline for monitoring change in the Monument.A benthic habitat map was developed for approximately 74.3 square kilometers or 98% of the BIRNM using a combination of semi-automated and manual classification methods. The remaining 2% was not mapped due to lack of imagery in the western part of the Monument at depths ranging from 1,000 to 1,400 meters. Habitats were interpreted from orthophotographs, LiDAR (Light Detection and Ranging) imagery and four different types of MBES (Multibeam Echosounder) imagery. Three minimum mapping units (MMUs) (100, 1,000 and 5,000 square meters) were used because of the wide range of depths present in the Monument. The majority of the area that was characterized was deeper than 30 m on the Bank/Shelf Escarpment. This escarpment area was dominated by uncolonized sand which transitioned to mud as depth increased. Bedrock was exposed in some areas of the escarpment, where steep slopes prevented sediment deposition. Mesophotic corals were seen in the underwater video, but were too sparsely distributed to be reliably mapped from the source imagery. Habitats on the Bank/Shelf were much more variable than those seen on the Bank/Shelf Escarpment. The majority of this shelf area was comprised of coral reef and hardbottom habitat dominated by various forms of turf, fleshy, coralline or filamentous algae. Even though algae was the dominant biological cover type, nearly a quarter (24.3%) of the Monument’s Bank/Shelf benthos hosted a cover of 10%-〈50% live coral.In total, 198 unique combinations of habitat classes describing the geography, geology and biology of the sea-floor were identified from the three types of imagery listed above. No thematic accuracy assessment was conducted for areas deeper than about 50 meters, most of which was located in the Bank/Shelf Escarpment. The thematic accuracy of classes in waters shallower than approximately 50 meters ranged from 81.4% to 94.4%. These thematic accuracies are similar to those reported for other NOAA benthic habitat mapping efforts in St. John (〉80%), the Main Eight Hawaiian Islands (〉84.0%) and the Republic of Palau (〉80.0%). These digital maps products can be used with confidence by scientists and resource managers for a multitude of different applications, including structuring monitoring programs, supporting management decisions, and establishing and managing marine conservation areas. The final deliverables for this project, including the benthic habitat maps, source imagery and in situ field data, are available to the public on a NOAA Biogeography Branch website (http://ccma.nos.noaa.gov/ecosystems/coralreef/stcroix.aspx) and through an interactive, web-based map application (http://ccma.nos.noaa.gov/explorer/biomapper/biomapper.html?id=BUIS).This report documents the process and methods used to create the shallow to deep-water benthic habitat maps for BIRNM. Chapter 1 provides a short introduction to BIRNM, including its history, marine life and ongoing research activities. Chapter 2 describes the benthic habitat classification scheme used to partition the different habitats into ecologically relevant groups. Chapter 3 explains the steps required to create a benthic habitat map using a combination of semi-automated and visual classification techniques. Chapter 4 details the steps used in the accuracy assessment and reports on the thematic accuracy of the final shallow-water map. Chapter 5 summarizes the type and abundance of each habitat class found inside BIRNM, how these habitats compare to past habitat maps and outlines how these new habitat maps may be used to inform future management activities.
    Keywords: Ecology ; Environment ; Management
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  simon.pittman@noaa.gov | http://aquaticcommons.org/id/eprint/14691 | 403 | 2014-02-24 19:04:50 | 14691 | United States National Ocean Service
    Publication Date: 2021-07-02
    Description: The St. Croix East End Marine Park (STXEEMP) was established in 2003 as the first multi-use marine park managed by the U.S. Virgin Islands Department of Planning and Natural Resources. It encompasses an area of approximately 155 km2 and is entirely within Territorial waters which extend up to 3 nautical miles from shore. As stated in the 2002 management plan, the original goals were to: protect and maintain the biological diversity and other natural values of the area; promote sound management practices for sustainable production purposes; protect the natural resource base from being alienated for other land use purposes that would be detrimental to the area’s biological diversity; and to contribute to regional and national development (The Nature Conservancy, 2002). At the time of its establishment, there were substantial data gaps in knowledge about living marine resources in the St. Croix, and existing data were inadequate for establishing baselines from which to measure the future performance of the various management zones within the park.In response to these data gaps, National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Monitoring and Assessment, Biogeography Branch (CCMA-BB) worked with territorial partners to characterize and assess the status of the marine environment in and around the STXEEMP and land-based stressors that affect them. This project collected and analyzed data on the distribution, diversity and landscape condition of marine communities across the STXEEMP. Specifically, this project characterized (1) landscape and adjacent seascape condition relevant to threats to coral reef ecosystem health, and (2) the marine communities within STXEEMP zones to increase local knowledge of resources exposed to different regulations and stressors.
    Keywords: Ecology ; Environment ; Management
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    NOAA/National Centers for Coastal Ocean Science | Charleston, SC
    In:  http://aquaticcommons.org/id/eprint/14710 | 403 | 2014-02-22 22:53:38 | 14710 | United States National Ocean Service
    Publication Date: 2021-07-02
    Description: Porphyrin metabolic disruption from exposure to xenobiotic contaminants such as heavy metals, dioxins, and aromatic hydrocarbons can elicit overproduction of porphyrins. Measurement of porphyrin levels, when used in conjunction with other diagnostic assays, can help elucidate an organism’s physiological condition and provide evidence for exposure to certain toxicants. A sensitive microplate fluorometric assay has been optimized for detectingtotal porphyrin levels in detergent solubilized protein extracts from symbiotic, dinoflagellate containing cnidarian tissues. The denaturing buffer used in this modified assay contains a number of potentially interfering components (e.g., sodium dodecyl sulfate (SDS), dithiothreitol (DTT), protease inhibitors, and chlorophyll from the symbiotic zooxanthellae), which required examination and validation. Examination of buffer components were validated for use in this porphyrin assay; while the use of a specific spectrofluorometric filter (excitation 400 ± 15 nm; emission 600 ± 20 nm) minimized chlorophyll interference. The detection limit for this assay is 10 fmol of total porphyrin per μg of total soluble protein and linearity is maintained up to 5000 fmol. The ability to measure total porphyrins in a SDS protein extract now allows a single extract to be used in multiple assays. This is an advantage over classical methods, particularly when tissue samples are limiting, as is often the case with coral due to availability and collection permit restrictions.
    Description: NOAA Technical Memorandum CRCP 17
    Keywords: Biology ; Chemistry ; Fisheries
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    NOAA/National Centers for Coastal Ocean Science | Charleston, SC
    In:  http://aquaticcommons.org/id/eprint/14759 | 403 | 2014-02-26 21:18:00 | 14759 | United States National Ocean Service
    Publication Date: 2021-07-03
    Description: The mucus surface layer of corals plays a number of integral roles in their overall health and fitness. This mucopolysaccharide coating serves as vehicle to capture food, a protective barrier against physical invasions and trauma, and serves as a medium to host a community of microorganisms distinct from the surrounding seawater. In healthy corals the associated microbial communities are known to provide antibiotics that contribute to the coral’s innate immunity and function metabolic activities such as biogeochemical cycling.Culture-dependent (Ducklow and Mitchell, 1979; Ritchie, 2006) and culture-independent methods (Rohwer, et al., 2001; Rohwer et al., 2002; Sekar et al., 2006; Hansson et al., 2009; Kellogg et al., 2009) have shown that coral mucus-associated microbial communities can change with changes in the environment and health condition of the coral. These changes may suggest that changes in the microbial associates not only reflect health status but also may assist corals in acclimating to changing environmental conditions. With the increasing availability of molecular biology tools, culture-independent methods are being used more frequently for evaluating the health of the animal host. Although culture-independent methods are able to provide more in-depth insights into the constituents of the coral surface mucus layer’s microbial community, their reliability and reproducibility rely on the initial sample collection maintaining sample integrity. In general, a sample of mucus is collected from a coral colony, either by sterile syringe or swab method (Woodley, et al., 2008), and immediately placed in a cryovial. In the case of a syringe sample, the mucus is decanted into the cryovial and the sealed tube is immediately flash-frozen in a liquid nitrogen vapor shipper (a.k.a., dry shipper). Swabs with mucus are placed in a cryovial, and the end of the swab is broken off before sealing and placing the vial in the dry shipper. The samples are then sent to a laboratory for analysis. After the initial collection and preservation of the sample, the duration of the sample voyage to a recipient laboratory is often another critical part of the sampling process, as unanticipated delays may exceed the length of time a dry shipper can remain cold, or mishandling of the shipper can cause it to exhaust prematurely. In remote areas, service by international shipping companies may be non-existent, which requires the use of an alternative preservation medium. Other methods for preserving environmental samples for microbial DNA analysis include drying on various matrices (DNA cards, swabs), or placing samples in liquid preservatives (e.g., chloroform/phenol/isoamyl alcohol, TRIzol reagent, ethanol). These methodologies eliminate the need for cold storage, however, they add expense and permitting requirements for hazardous liquid components, and the retrieval of intact microbial DNA often can be inconsistent (Dawson, et al., 1998; Rissanen et al., 2010).A method to preserve coral mucus samples without cold storage or use of hazardous solvents, while maintaining microbial DNA integrity, would be an invaluable tool for coral biologists, especially those in remote areas. Saline-saturated dimethylsulfoxide-ethylenediaminetetraacetic acid (20% DMSO-0.25M EDTA, pH 8.0), or SSDE, is a solution that has been reported to be a means of storing tissue of marine invertebrates at ambient temperatures without significant loss of nucleic acid integrity (Dawson et al., 1998, Concepcion et al., 2007). While this methodology would be a facile and inexpensive way to transport coral tissue samples, it is unclear whether the coral microbiota DNA would be adversely affected by this storage medium either by degradation of the DNA, or a bias in the DNA recovered during the extraction process created by variations in extraction efficiencies among the various community members. Tests to determine the efficacy of SSDE as an ambient temperature storage medium for coral mucus samples are presented here.
    Keywords: Chemistry ; Fisheries
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    In:  http://aquaticcommons.org/id/eprint/14771 | 403 | 2014-02-27 19:34:00 | 14771 | United States National Ocean Service
    Publication Date: 2021-07-03
    Description: Photo Gallery These photographs illustrate the article “Understanding uncertainty in seagrass injury recovery: an information-theoretic approach,” by Amy V. Uhrin, W. Judson Kenworthy, and Mark S. Fonseca, tentatively scheduled to appear in Ecological Applications 21(4), June 2011.
    Keywords: Ecology ; Environment ; Management
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    NOAA/National Centers for Coastal Ocean Science | Charleston, SC
    In:  http://aquaticcommons.org/id/eprint/14781 | 403 | 2014-02-27 20:12:17 | 14781 | United States National Ocean Service
    Publication Date: 2021-07-03
    Keywords: Ecology ; Environment ; Management
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    NOAA/National Ocean Service/Office of National Marine Sanctuary | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14768 | 403 | 2021-02-27 20:55:23 | 14768 | United States National Ocean Service
    Publication Date: 2021-07-03
    Description: The Monitor National Marine Sanctuary (MNMS) was the nation’s first sanctuary, originally established in 1975 to protect the famous civil war ironclad shipwreck, the USS Monitor. Since 2008, sanctuary sponsored archeological research has branched out to include historically significant U-boats and World War II shipwrecks within the larger Graveyard of the Atlantic off the coast of North Carolina. These shipwrecks are not only important for their cultural value, but also as habitat for a wide diversity of fishes, invertebrates and algal species. Additionally, due to their unique location within an important area for biological productivity, the sanctuary and other culturally valuable shipwrecks within the Graveyard of the Atlantic are potential sites for examining community change. For this reason, from June 8-30, 2010, biological and ecological investigations were conducted at four World War II shipwrecks (Keshena, City of Atlanta, Dixie Arrow, EM Clark), as part of the MNMS 2010 Battle of the Atlantic (BOTA) research project. At each shipwreck site, fish community surveys were conducted and benthic photo-quadrats were collected to characterize the mobile conspicuous fish, smaller prey fish, and sessile invertebrate and algal communities. In addition, temperature sensors were placed at all four shipwrecks previously mentioned, as well as an additional shipwreck, the Manuela. The data, which establishes a baseline condition to use in future assessments, suggest strong differences in both the fish and benthic communities among the surveyed shipwrecks based on the oceanographic zone (depth). In order to establish these shipwrecks as sites for detecting community change it is suggested that a subset of locations across the shelf be selected and repeatedly sampled over time. In order to reduce variability within sites for both the benthic and fish communities, a significant number of surveys should be conducted at each location. This sampling strategy will account for the natural differences in community structure that exist across the shelf due to the oceanographic regime, and allow robust statistical analyses of community differences over time.
    Keywords: Ecology ; Environment ; Fisheries ; Management
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    NOAA/National Centers for Coastal Ocean Science | Beaufort, NC
    In:  http://aquaticcommons.org/id/eprint/14782 | 403 | 2014-02-27 19:50:19 | 14782 | United States National Ocean Service
    Publication Date: 2021-06-25
    Description: If you own property on one of North Carolina’s estuaries, you can use this guide as a tool to learn about the choices you have to control your shoreline erosion and help decide which approach may be right for you. In North Carolina, we make a distinction between waterfront property that is located on the estuary, referred to as estuarine, shoreline, soundfront or riverside property, and waterfront property located directly on the ocean, referred to as oceanfront. Why? State laws and regulations addressing estuarine and oceanfront property, and the available erosion control methods, are quite different. This guide focuses on estuarine property. We’ll introduce you to the six main erosion control options in use in North Carolina and give you information about the out-of-pocket costs and tangible benefits of each option. We’ll also give you information about “hidden” costs and benefits that you may want to factor into your decision-making. You are fortunate to have a piece of estuarine shoreline to call your own, whether it’s your year-round residence or a weekend getaway. And if you’ve noticed some shoreline erosion lately, you’re probably a little concerned. But there are ready solutions.
    Keywords: Education ; Environment ; Management
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    NOAA/Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14784 | 403 | 2014-02-27 19:47:32 | 14784 | United States National Ocean Service
    Publication Date: 2021-06-25
    Description: The Gap Analysis of Marine Ecosystem Data project is a review of available geospatial data which can assist in marine natural resource management for eight park units. The project includes the collection of geospatial information and its incorporation in a single consistent geodatabase format. The project also includes a mapping portal which can be seen at: http://ccma.nos.noaa.gov/explorer/gapanalysis/gap_analysis.htmlIn addition to the collection of geospatial information and mapping portal we have conducted a gap analysis of a standard suite of available information for managing marine resources. Additional gap were identified by interviewing park service staff.
    Keywords: Environment ; Management
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 26
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  • 94
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    In:  cbostrom@abo.fi | http://aquaticcommons.org/id/eprint/14783 | 403 | 2014-02-28 21:08:24 | 14783 | United States National Ocean Service
    Publication Date: 2021-06-25
    Description: We review the progress made in the emerging field of coastal seascape ecology, i.e. the application of landscape ecology concepts and techniques to the coastal marine environment. Since the early 1990s, the landscape ecology approach has been applied in several coastal subtidal and intertidal biogenic habitats across a range of spatial scales. Emerging evidence indicates that animals in theseseascapes respond to the structure of patches and patch mosaics in different ways and at different spatial scales, yet we still know very little about the ecological significance of these relationships and the consequences of change in seascape patterning for ecosystem functioning and overall biodiversity. Ecological interactions that occur within patches and among different types of patches (or seascapes) are likely to be critically important in maintaining primary and secondary production, trophic transfer, biodiversity, coastal protection, and supporting a wealth of ecosystem goods and services. We review faunal responses to patch and seascape structure, including effects of fragmentation on 5 focal habitats: seagrass meadows, salt marshes, coral reefs, mangrove forests, and oyster reefs. Extrapolating and generalizing spatial relationships between ecological patterns and processes across scales remains a significant challenge, and we show that there are major gaps in our understanding of these relationships. Filling these gaps will be crucial for managing and responding to an inevitably changing coastal environment. We show that critical ecological thresholds exist in the structural patterning of biogenic ecosystems that, when exceeded, cause abrupt shifts in the distribution and abundance of organisms. A better understanding of faunal–seascape relationships, including the identifications of threshold effects, is urgently needed to support the development of more effective and holistic management actions in restoration, site prioritization, and forecasting the impacts of environmental change.
    Description: Included in theme section, "Seascape ecology: application of landscape ecology to the marine environment"
    Keywords: Ecology ; Environment ; Management
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 191-217
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  • 95
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    Unknown
    In:  wedding@hawaii.edu | http://aquaticcommons.org/id/eprint/14788 | 403 | 2014-02-28 21:01:40 | 14788 | United States National Ocean Service
    Publication Date: 2021-06-25
    Description: Spatial pattern metrics have routinely been applied to characterize and quantify structural features of terrestrial landscapes and have demonstrated great utility in landscape ecology and conservation planning. The important role of spatial structure in ecology and management is now commonly recognized, and recent advances in marine remote sensing technology have facilitated the application of spatial pattern metrics to the marine environment. However, it is not yet clear whether concepts, metrics, and statistical techniques developed for terrestrial ecosystems are relevant for marine species and seascapes. To address this gap in our knowledge, we reviewed, synthesized, and evaluated the utility and application of spatial pattern metrics in the marine science literature over the past 30 yr (1980 to 2010). In total, 23 studies characterized seascape structure, of which 17 quantified spatial patterns using a 2-dimensional patch-mosaic model and 5 used a continuously varying 3-dimensional surface model. Most seascape studies followed terrestrial-based studies in their search for ecological patterns and applied or modified existing metrics. Only 1 truly unique metric was found (hydrodynamic aperture applied to Pacific atolls). While there are still relatively few studies using spatial pattern metrics in the marine environment, they have suffered from similar misuse as reported for terrestrial studies, such as the lack of a priori considerations or the problem of collinearity between metrics. Spatial pattern metrics offer great potential for ecological research and environmental management in marine systems, and future studies should focus on (1) the dynamic boundary between the land and sea; (2) quantifying 3-dimensional spatial patterns; and (3) assessing and monitoring seascape change.
    Description: Included in theme section, "Seascape ecology: application of landscape ecology to the marine environment"
    Keywords: Environment ; Management
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 219-232
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  • 96
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    In:  melissa_snover@nps.gov | http://aquaticcommons.org/id/eprint/14838 | 403 | 2014-02-28 23:00:28 | 14838 | United States National Marine Fisheries Service
    Publication Date: 2021-06-26
    Description: Understanding the phase and timing of ontogenetic habitat shifts underlies the study of a species’ life history and population dynamics. This information is especially critical to the conservation and management of threatened and endangered species, such as the loggerhead sea turtle Caretta caretta. The early life of loggerheads consists of a terrestrial egg and hatchling stage, a posthatchlingand juvenile oceanic, pelagic feeding stage, and a juvenile neritic, primarily benthic feeding stage. In the present study, novel approaches were applied to explore the timing of the loggerhead ontogenetic shift from pelagic to benthic habitats. The most recent years of somatic growth are recorded as annual marks in humerus cross sections. A consistent growth mark pattern in benthic juvenile loggerheads was identified, with narrow growth marks in the interior of the bone transitioning to wider growth marks at the exterior, indicative of a sharp increase in growth rates at the transitional growth mark. This increase in annual growth is hypothesized to correlate with the ontogenetic shift from pelagic to benthic habitats. Stable isotopes of carbon and nitrogen just interior and exteriorto the transitional growth mark, as well as stable isotopes from pelagic and benthic flora, fauna and loggerhead stomach contents, were analyzed to determine whether this transition related to a diet shift. The results clearly indicate that a dietary shift from oceanic/pelagic to neritic/benthic feeding corresponds to a transitional growth mark. The combination of stable isotope analysis with skeletochronology can elucidate the ecology of cryptic life history stages during loggerhead ontogeny.
    Keywords: Chemistry ; Fisheries
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 25-31
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  • 97
    Publication Date: 2021-06-26
    Description: A competitive enzyme-linked immunosorbent assay (cELISA) was developed by using a whole-cell antigen from a marine Brucella sp. isolated from a harbor seal (Phoca vitulina). The assay was designed to screen sera from multiple marine mammal species for the presence of antibodies against marine-origin Brucella. Based on comparisons with culture-confirmed cases, specificity and sensitivity for cetacean samples tested were 73% and 100%, respectively. For pinniped samples, specificity and sensitivity values were 77% and 67%, respectively. Hawaiian monk seal (Monachus schauinslandi; n = 28) and bottlenose dolphin (Tursiops truncatus; n = 48) serum samples were tested, and the results were compared with several other assays designed to detect Brucella abortus antibodies. The comparison testing revealed the marine-origin cELISA to be more sensitive than the B. abortus tests by the detection of additional positive serum samples. The newly developed cELISA is an effective serologic method for detection of the presence of antibodies against marine-origin Brucella sp. in marine mammals.
    Keywords: Chemistry ; Fisheries ; Management
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 856-862
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  • 98
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    Unknown
    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14846 | 403 | 2014-03-04 21:59:09 | 14846 | United States National Ocean Service
    Publication Date: 2021-06-26
    Description: The intent of this field mission was to continue ongoing efforts: (1) to spatially characterize and monitor the distribution, abundance and size of both reef fishes and conch within and around the waters of the Virgin Islands National Park (VIIS) and newly established Virgin Islands Coral Reef National Monument (VICR), (2) to correlate this information to in-situ data collected on associated habitat parameters, (3) to use this information to establish the knowledge base necessary for enacting management decisions in a spatial setting and to establish the efficacy of those management decisions. This work is supported by the National Park Service and NOAA’s Coral Reef Conservation Program’s Caribbean Coral Reef Ecosystem Monitoring Project.
    Keywords: Biology ; Ecology ; Environment ; Fisheries ; Management
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 18
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  • 99
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    Unknown
    U.S. Geological Survey | Reston, VA
    In:  ggelfenbaum@usgs.gov | http://aquaticcommons.org/id/eprint/14844 | 403 | 2015-04-28 18:20:29 | 14844
    Publication Date: 2021-06-26
    Description: This paper reviews the scientific data on the ecosystem services provided by shoreline habitats, the evidence for adverse impacts from bulkheading on those habitats and services, and describes alternative approaches to shoreline stabilization, which minimize adverse impacts to the shoreline ecosystem. Alternative shoreline stabilization structures that incorporate natural habitats, also known as living shorelines, have been popularized by environmental groups and state regulatory agencies in the mid-Atlantic. Recent data on living shoreline projects in North Carolina that include a stone sill demonstrate that the sills increase sedimentation rates, that after 3 years marshes behind the sills have slightly reduced biomass, and that the living shoreline projects exhibit similar rates of fishery utilization as nearby natural fringing marshes. Although the current emphasis on shoreline armoring in Puget Sound is on steeper, higher-energy shorelines, armoring of lower-energy shorelines may become an issue in the future with expansion of residential development and projected rates of sea level rise. The implementation of regulatory policy on estuarine shoreline stabilization in North Carolina and elsewhere is presented. The regulatory and public education issues experienced in North Carolina, which have made changes in estuarine shoreline stabilization policy difficult, may inform efforts to adopt a sustainable shoreline armoring strategy in Puget Sound. A necessary foundation for regulatory change in shoreline armoring policy, and public support for that change, is rigorous scientific assessment of the variety of services that natural shoreline habitats provide both to the ecosystem and to coastal communities, and evidence demonstrating that shoreline armoring can adversely impact the provision of those services.
    Keywords: Ecology ; Environment ; Management
    Repository Name: AquaDocs
    Type: book_section , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 91-102
    Format: 266
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    NOAA/National Centers for Coastal Ocean Science | Silver Spring, MD
    In:  http://aquaticcommons.org/id/eprint/14843 | 403 | 2014-03-04 22:11:11 | 14843 | United States National Ocean Service
    Publication Date: 2021-06-26
    Description: The United States Coral Reef Task Force (USCRTF) was established in 1998 by Presidential Executive Order 13089 to lead U.S. efforts to preserve and protect coral reef ecosystems. Current, accurate, and consistent maps greatly enhance efforts to preserve and manage coral reef ecosystems. With comprehensive maps and habitat assessments, coral reef managers can be more effective in designing and implementing a variety of conservation measures, including:• Long-term monitoring programs with accurate baselines from which to track changes;• Place-based conservation measures such as marine protected areas (MPAs); and• Targeted research to better understand the oceanographic and ecological processes affecting coral reef ecosystem health.The National Oceanic and Atmospheric Administration’s (NOAA) National Ocean Service (NOS) is tasked with leading the coral ecosystem mapping element of the U.S. Coral Reef Task Force (CRTF) under the authority of the Presidential Executive Order 13089 to map and manage the coral reefs of the United States.
    Keywords: Conservation ; Environment ; Fisheries ; Management
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 37
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