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  • Other Sources  (293)
  • Articles (OceanRep)  (293)
  • MDPI  (210)
  • AGU (American Geological Union)
  • AGU
  • American Meteorological Society
  • Springer Nature
  • 1
    Publication Date: 2020-06-24
    Description: Nitrogen fixation — the reduction of dinitrogen (N2) gas to biologically available nitrogen (N) — is an important source of N for terrestrial and aquatic ecosystems. In terrestrial environments, N2-fixing symbioses involve multicellular plants, but in the marine environment these symbioses occur with unicellular planktonic algae. An unusual symbiosis between an uncultivated unicellular cyanobacterium (UCYN-A) and a haptophyte picoplankton alga was recently discovered in oligotrophic oceans. UCYN-A has a highly reduced genome, and exchanges fixed N for fixed carbon with its host. This symbiosis bears some resemblance to symbioses found in freshwater ecosystems. UCYN-A shares many core genes with the 'spheroid bodies' of Epithemia turgida and the endosymbionts of the amoeba Paulinella chromatophora. UCYN-A is widely distributed, and has diversified into a number of sublineages that could be ecotypes. Many questions remain regarding the physical and genetic mechanisms of the association, but UCYN-A is an intriguing model for contemplating the evolution of N2-fixing organelles.
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  • 2
    Publication Date: 2017-06-19
    Description: Deep-water ecosystems are characterized by relatively low carbonate concentration values and, due to ocean acidification (OA), these habitats might be among the first to be exposed to undersaturated conditions in the forthcoming years. However, until now, very few studies have been conducted to test how cold-water coral (CWC) species react to such changes in the seawater chemistry. The present work aims to investigate the mid-term effect of decreased pH on calcification of the two branching CWC species most widely distributed in the Mediterranean, Lophelia pertusa and Madrepora oculata. No significant effects were observed in the skeletal growth rate, microdensity and porosity of both species after 6 months of exposure. However, while the calcification rate of M. oculata was similar for all colony fragments, a heterogeneous skeletal growth pattern was observed in L. pertusa, the younger nubbins showing higher growth rates than the older ones. A higher energy demand is expected in these young, fast-growing fragments and, therefore, a reduction in calcification might be noticed earlier during long-term exposure to acidified conditions.
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  • 3
    Publication Date: 2020-02-06
    Description: Linear diterpenes that are commonly found in brown algae are of high chemotaxonomic and ecological importance. This study reports bifurcatriol (1), a new linear diterpene featuring two stereogenic centers isolated from the Irish brown alga Bifurcariabifurcata. The gross structure of this new natural product was elucidated based on its spectroscopic data (IR, 1D and 2D-NMR, HRMS). Its absolute configuration was identified by experimental and computational vibrational circular dichroism (VCD) spectroscopy, combined with the calculation of 13C-NMR chemical shielding constants. Bifurcatriol (1) was tested for in vitro antiprotozoal activity towards a small panel of parasites (Plasmodium falciparum, Trypanosoma brucei rhodesiense, T. cruzi, and Leishmania donovani) and cytotoxicity against mammalian primary cells. The highest activity was exerted against the malaria parasite P. falciparum (IC50 value 0.65 μg/mL) with low cytotoxicity (IC50 value 56.6 μg/mL). To our knowledge, this is the first successful application of VCD and DP4 probability analysis of the calculated 13C-NMR chemical shifts for the simultaneous assignment of the absolute configuration of multiple stereogenic centers in a long-chain acyclic natural product.
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  • 4
    Publication Date: 2021-02-08
    Description: The structural repertoire of bioactive naphthacene quinones is expanded by engineering Streptomyces albus to express the lysolipin minimal polyketide synthase II (PKS II) genes from Streptomyces tendae Tü 4042 (llpD-F) with the corresponding cyclase genes llpCI-CIII. Fermentation of the recombinant strain revealed the two new polyaromatic tridecaketides lysoquinone-TH1 (7, identified) and TH2 (8, postulated structure) as engineered congeners of the dodecaketide lysolipin (1). The chemical structure of 7, a benzo[a]naphthacene-8,13-dione, was elucidated by NMR and HR-MS and confirmed by feeding experiments with [1,2-13C2]-labeled acetate. Lysoquinone-TH1 (7) is a pentangular polyphenol and one example of such rare extended polyaromatic systems of the benz[a]napthacene quinone type produced by the expression of a minimal PKS II in combination with cyclases in an artificial system. While the natural product lysolipin (1) has antimicrobial activity in nM-range, lysoquinone-TH1 (7) showed only minor potency as inhibitor of Gram-positive microorganisms. The bioactivity profiling of lysoquinone-TH1 (7) revealed inhibitory activity towards phosphodiesterase 4 (PDE4), an important target for the treatment in human health like asthma or chronic obstructive pulmonary disease (COPD). These results underline the availability of pentangular polyphenolic structural skeletons from biosynthetic engineering in the search of new chemical entities in drug discovery
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  • 5
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    AGU
    In:  Journal of Geophysical Research, 78 (17). pp. 3340-3355.
    Publication Date: 2020-07-24
    Description: The application of plagioclase geothermometry to plagioclase-bearing volcanic ash layers and to the glassy margins of pillow basalts from the fast-spreading East Pacific rise, the moderately spreading Gorda and Juan de Fuca ridges, and the slow-spreading mid-Atlantic ridge has shown that magma temperatures, as well as average An contents of plagioclases, are negatively correlated with spreading rates. A detailed investigation of the major element chemistry of volcanic glasses from each of these areas suggests that the observed consistent element-element covariances among individual populations of samples have been caused by fractional crystallization of the magmas. The regularity of chemical variation and the similarity of magma temperatures within each population of samples suggest that magmas ascending from beneath each ridge have had similar evolutionary histories. Vector analysis of the chemical data of all samples of volcanic glasses indicate that each population of samples from each of the spreading centers is chemically distinct, even though all samples have been subjected to similar amounts of fractional crystallization. The compositional distinctiveness of each population of oceanic tholeiites probably reflects differences in the depths at which the magmas were generated. Calculated magma temperatures and geothermal gradients calculated from published heat flow measurements can be used to estimate depths of magma generation of about 16 km beneath the East Pacific rise and about 23 km beneath the mid-Atlantic ridge.
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  • 6
    Publication Date: 2020-02-06
    Description: The knowledge of the phase behavior of carbon dioxide (CO2)-rich mixtures is a key factor to understand the chemistry and migration of natural volcanic CO2 seeps in the marine environment, as well as to develop engineering processes for CO2 sequestration coupled to methane (CH4) production from gas hydrate deposits. In both cases, it is important to gain insights into the interactions of the CO2-rich phase—liquid or gas—with the aqueous medium (H2O) in the pore space below the seafloor or in the ocean. Thus, the CH4-CO2 binary and CH4-CO2-H2O ternary mixtures were investigated at relevant pressure and temperature conditions. The solubility of CH4 in liquid CO2 (vapor-liquid equilibrium) was determined in laboratory experiments and then modelled with the Soave–Redlich–Kwong equation of state (EoS) consisting of an optimized binary interaction parameter kij(CH4-CO2) = 1.32 × 10−3 × T − 0.251 describing the non-ideality of the mixture. The hydrate-liquid-liquid equilibrium (HLLE) was measured in addition to the composition of the CO2-rich fluid phase in the presence of H2O. In contrast to the behavior in the presence of vapor, gas hydrates become more stable when increasing the CH4 content, and the relative proportion of CH4 to CO2 decreases in the CO2-rich phase after gas hydrate formation.
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  • 7
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    AGU
    In:  Journal of Geophysical Research: Solid Earth, 91 (B12). pp. 12711-12721.
    Publication Date: 2020-07-23
    Description: Four major NE trending postglacial volcanic and tectonic fissure swarms (volcanic systems) occur on the Reykjanes Peninsula, and the westernmost three are the main subject of this paper. Two main types of basaltic volcanoes are associated with these systems: shields of picrite and olivine tholeiite and tholeiite fissures. The average volume of 26 shields is 1.11 km3, and the total production is 29 km3, whereas the corresponding figures for lavas from 101 volcanic fissures are 0.11 km3 and 11 km3. The tectonic fractures are either tension fractures or normal faults of widths up to 20 m, throws up to 10 m, and lengths up to several kilometers. The volcanism and tectonics can be explained by magmatic pressure changes in ellipsoidal magma reservoirs located beneath the fissure swarms. A magmatic pressure increase of the order of 10 MPa is found to be sufficient for an excess uplift of the order of several meters, which is all that is needed to account for the fractures and measured dilation in the fissure swarms. It is concluded that most shield volcanoes, in particular the picrite shields and the large olivine tholeiite shields, formed during the early postglacial period and that their formation was facilitated by the stress field generated as a result of rapid uplift and bending of the crust above the reservoirs. Since that time the reservoirs have become independent systems, the volcanism has been confined to fissures, and the production rate has decreased significantly. During typical fissure eruptions (0.015 km3), only the uppermost several hundred meters of the source reservoir, depending on its magma content, supply magma to the eruption.
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  • 8
    Publication Date: 2018-02-05
    Description: We have developed a transportable spectroscopic nitrogen isotopic analyzer. The spectrometer is based on dual-modulation Faraday rotation spectroscopy of nitric oxide isotopologues with near shot-noise limited performance and baseline-free operation. Noise analysis indicates minor isotope (15NO) detection sensitivity of 0.36 ppbv·Hz−1/2, corresponding to noise-equivalent Faraday rotation angle (NEA) of 1.31 × 10−8 rad·Hz−1/2 and noise-equivalent absorbance (αL)min of 6.27 × 10−8 Hz−1/2. White-noise limited performance at 2.8× the shot-noise limit is observed up to ~1000 s, allowing reliable calibration and sample measurement within the drift-free interval of the spectrometer. Integration with wet-chemistry based on acidic vanadium(III) enables conversion of aqueous nitrate/nitrite samples to gaseous NO for total nitrogen isotope analysis. Isotopic ratiometry is accomplished via time-multiplexed measurements of two NO isotope transitions. For 5 μmol potassium nitrate samples, the instrument consistently yields ratiometric precision below 0.3‰, thus demonstrating potential as an in situ diagnostic tool for environmental nitrogen cycle studies.
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  • 9
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    AGU
    In:  Reviews of Geophysics, 28 (4). pp. 357-380.
    Publication Date: 2020-06-03
    Description: Recent developments in side-scan sonar technology have increased the potential for fundamental changes in our understanding of ocean basins. Developed in the late 1960s, “side looking” sonars have been widely used for the last two decades to obtain qualitative estimates of the acoustic properties of the materials of the seafloor. Modern developments in the ability to obtain spatially correct digital data from side-scan sonar systems have resulted in images that can be subsequently processed, enhanced, and quantified. With appropriate processing, these acoustic images can be made to resemble easily recognizable optical photographs. Any geological interpretation of these images requires an understanding of the inherent limitations of the data acquisition system. When imagery is collected, these limitations are largely centered on the concept of resolution. In side-scan sonar images, there are several different types of resolution, including along- and across-track resolution, display resolution, and absolute instrumental resolution. All of these parameters play a critical role in our ability to calibrate and ultimately to interpret the new pictures of the ocean floor. Acoustic image processing is a new application of an old and well-established technique. Digital optical images have benefited from several decades of development in processing techniques. These relatively sophisticated techniques have been applied to photographic images from satellites and spacecraft, images which are “noisy” and difficult to obtain but extremely valuable. Side-scan sonar systems, on the other hand, have only recently been able to produce spatially correct, digital images of the seafloor. The application of digital signal-processing techniques to side-scan sonar data will now allow us to quantify what had been previously very subjective and qualitative interpretations of images of the seafloor. The goal of all this processing of acoustic images remains clear: the development of an interpretable map of the geology of the seafloor.
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  • 10
    Publication Date: 2020-02-06
    Description: In the frame of studies on secondary metabolites produced by fungi from deep-sea environments we have investigated inhibitors of enzymes playing key roles in signaling cascades of biochemical pathways relevant for the treatment of diseases. Here we report on a new inhibitor of the human protein tyrosine phosphatase 1B (PTP1B), a target in the signaling pathway of insulin. A new asperentin analog is produced by an Aspergillus sydowii strain isolated from the sediment of the deep Mediterranean Sea. Asperentin B (1) contains an additional phenolic hydroxy function at C-6 and exhibits an IC50 value against PTP1B of 2 μM in vitro, which is six times stronger than the positive control, suramin. Interestingly, asperentin (2) did not show any inhibition of this enzymatic activity. Asperentin B (1) is discussed as possible therapeutic agents for type 2 diabetes and sleeping sickness.
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