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  • 1
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    Springer Nature | Springer
    Publication Date: 2024-04-05
    Description: This open access book offers the first comprehensive account of the pan-genome concept and its manifold implications. The realization that the genetic repertoire of a biological species always encompasses more than the genome of each individual is one of the earliest examples of big data in biology that opened biology to the unbounded. The study of genetic variation observed within a species challenges existing views and has profound consequences for our understanding of the fundamental mechanisms underpinning bacterial biology and evolution. The underlying rationale extends well beyond the initial prokaryotic focus to all kingdoms of life and evolves into similar concepts for metagenomes, phenomes and epigenomes. The book’s respective chapters address a range of topics, from the serendipitous emergence of the pan-genome concept and its impacts on the fields of microbiology, vaccinology and antimicrobial resistance, to the study of microbial communities, bioinformatic applications and mathematical models that tie in with complex systems and economic theory. Given its scope, the book will appeal to a broad readership interested in population dynamics, evolutionary biology and genomics.
    Keywords: Microbial Genetics and Genomics ; Evolutionary Biology ; Genetics and Population Dynamics ; Microbial Ecology ; Human Genetics ; Genetics and Genomics ; Comparative genomics ; Metagenomics ; Microbial Population Analysis ; Pangenome Profile ; Supra-Genome Analysis ; Adaptive Evolution ; Computational Tools ; Bioinformatic Genomics ; Core Dispensable Genome ; Selection, Recombination, Composition ; Acquired Resistance ; Bacterial Species Concept ; Genomic Diversity ; Bacterial Ecology, Microevolution ; Open Access ; Pan-metagenomics ; Pan-microbiomics ; Pan-epigenome ; Gene Transfer ; Pan-phenomes ; Microbiology (non-medical) ; Genetics (non-medical) ; Evolution ; Applied mathematics ; Ecological science, the Biosphere ; Medical genetics ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical) ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAJ Evolution ; thema EDItEUR::P Mathematics and Science::PB Mathematics::PBW Applied mathematics ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAF Ecological science, the Biosphere ; thema EDItEUR::M Medicine and Nursing::MF Pre-clinical medicine: basic sciences::MFN Medical genetics ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAK Genetics (non-medical)
    Language: English
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  • 2
    Publication Date: 2020-11-12
    Description: Public concern about anthropogenic seismic- ity in Italy first arose in the aftermath of the deadly M ≈ 6 earthquakes that hit the Emilia-Romagna region (northern Italy) in May 2012. As these events occurred in a (tectonically active) region of oil and gas production and storage, the question was raised, whether stress perturbations due to underground industrial activities could have induced or triggered the shocks. Following expert recommendations, in 2014, the Italian Oil & Gas Safety Authority (DGS-UNMIG, Ministry of Economic Development) published guidelines (ILG - Indirizzi e linee guida per il monitoraggio della sismicità, delle deformazioni del suolo e delle pressioni di poro nell’ambito delle attività antropiche), describing regula- tions regarding hydrocarbon extraction, waste-water in- jection and gas storage that could also be adapted to other technologies, such as dams, geothermal systems, CO2 storage, and mining. The ILG describe the frame- work for the different actors involved in monitoring activities, their relationship and responsibilities, the procedure to be followed in case of variations of mon- itored parameters, the need for in-depth scientific anal- yses, the definition of different alert levels, their mean- ing and the parameters to be used to activate such alerts. Four alert levels are defined, the transition among which follows a decision to be taken jointly by relevant au- thorities and industrial operator on the basis of evalua- tion of several monitored parameters (micro-seismicity, ground deformation, pore pressure) carried on by a scientific-technical agency. Only in the case of liquid reinjection, the alert levels are automatically activated on the basis of exceedance of thresholds for earthquake magnitude and ground shaking – in what is generally known as a Traffic Light System (TLS). Istituto Nazionale di Geofisica e Vulcanologia has been charged by the Italian oil and gas safety authority (DGS- UNMIG) to apply the ILG in three test cases (two oil extraction and one gas storage plants). The ILG indeed represent a very important and positive innovation, as they constitute official guidelines to coherently regulate monitoring activity on a national scale. While pilot studies are still mostly under way, we may point out merits of the whole framework, and a few possible critical issues, requiring special care in the implementa- tion. Attention areas of adjacent reservoirs, possibly licenced to different operators, may overlap, hence mak- ing the point for joint monitoring, also in view of the possible interaction between stress changes related to the different reservoirs. The prescribed initial blank- level monitoring stage, aimed at assessing background seismicity, may lose significance in case of nearby ac- tive production. Magnitude – a critical parameter used to define a possible step-up in activation levels – has inherent uncertainty and can be evaluated using differ- ent scales. A final comment considers the fact that relevance of TLS, most frequently used in hydraulic fracturing operations, may not be high in case of trig- gered tectonic events.
    Description: Published
    Description: 1015–1028
    Description: 1IT. Reti di monitoraggio e sorveglianza
    Description: JCR Journal
    Keywords: Anthropogenic seismicity ; Alert system ; Monitoring guidelines ; 04.06. Seismology ; 05.04. Instrumentation and techniques of general interest
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 3
    Publication Date: 2021-01-22
    Description: Spectral analysis has been applied to almost thou-sand seismic events recorded at Vesuvius volcano (Naples,southern Italy) in 2018 with the aim to test a new tool fora fast event classification. We computed two spectral pa-rameters, central frequency and shape factor, from the spec-tral moments of order 0, 1, and 2, for each event at sevenseismic stations taking the mean among the three compo-nents of ground motion. The analyzed events consist ofvolcano-tectonic earthquakes, low frequency events and un-classified events (landslides, rockfall, thunders, quarry blasts,etc.). Most of them are of low magnitude, and/or low maxi-mum signal amplitude, therefore the signal to noise ratio isvery different between the low noise summit stations andthe higher noise stations installed at low elevation aroundthe volcano. The results of our analysis show that volcano-tectonic earthquakes and low frequency events are easily dis-tinguishable through the spectral moments values, particu-larly at seismic stations closer to the epicenter. On the con-trary, unclassified events show the spectral parameters valuesdistributed in a broad range which overlap both the volcano-tectonic earthquakes and the low frequency events. Since thecomputation of spectral parameters is extremely easy and fastfor a detected event, it may become an effective tool for eventclassification in observatory practice.
    Description: Published
    Description: 67–74
    Description: 1SR TERREMOTI - Sorveglianza Sismica e Allerta Tsunami
    Description: N/A or not JCR
    Keywords: Vesuvius ; Spectral Analisys ; 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 4
    Publication Date: 2020-10-01
    Description: Several months of ambient seismic noise recordings are used for investigating the distribution of elastic properties in the Fucino Plain, one of the largest intermontane tectonic depressions of the Italian Apennine chain (Central Italy). The Plain is characterized by a low level of seismicity but the presence of several active faults makes it an Italian area of high seismic hazard. The most recent and strongest seismic event in Fucino Plain occurred in the 1915 (Avezzano earthquake) and it represents one of the most energetic events (Ms = 7.0) happened in central Apennines. Inter-stations Green’s functions are reconstructed by the cross-correlation of continuous ambient noise data recorded from twelve seismic velocimeters deployed around the Avezzano city, and organized in two different temporally sub-networks. The aim of cross-correlation analysis is to extract surface waves from Green’s functions for investigating the dispersive response of the structure. We analyzed the temporal stability of the cross-correlated signals that is used as an indicator of reliability of measurements and as criteria to select the Green’s functions to analyze
    Description: Published
    Description: 1173-1176
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Keywords: Cross correlation ; Noise ; 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 5
    Publication Date: 2020-11-30
    Description: Buildings close to each other can perform different behaviour despite its similar seismic vulnerability. This effect is mainly due to the local seismic response connected to the characteristics of the shallow soil layers, especially when we move away from the epicentral area and the near field motion reduces its importance among the total amount of shaking. In this paper we show some results of the microzonation project of the Avezzano municipality, a town located in the southwestern portion of the Abruzzi region, which experienced the severe effects of the January 13th, 1915 M 7.0 earthquake. Starting from a particularly detailed knowledge of the geological characteristics of outcropping lithologies and inferring the trend of subsoil geometries, we explored the role played by the near-surface geology in causing variability of the ground motion by analysing a large database of earthquakes and microtremor recordings acquired by temporary seismological networks using classical site-reference and non-reference spectral techniques. Based on the obtained results we can seismically characterize all the municipal territory not only in terms of fundamental resonance frequency, useful in drawing maps of seismic microzonation and design geological sections, but also of amplification factors helpful in verifying numerical modelling of seismic response as required by national microzonation guidelines. We have also found many criticisms that need a more detailed analysis in order to establish the cause of these anomalies.
    Description: Published
    Description: 1153-1157
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Keywords: Microzonation ; Site response ; Spectral techniques ; Seismic amplification ; 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 6
    Publication Date: 2021-01-11
    Description: The Alto Tiberina normal fault (ATF) in central Italy is a 50-km-long crustal structure that dips at a low angle (15–20◦). Events on the fault plane are about 10 times less frequent than those located in its shallower syn- and antithetic hanging-wall splays. To enhance ATF catalog and achieve a better understanding of the degree of coupling in the fault system, we apply a template matching technique in the 2010–2014 time window.We augment by a factor 5 the detections and decrease the completeness magnitude to negative values. Contrary to what previously observed on ATF, we highlight intermittent seismic activity and long-lasting clusters interacting with sequences on the shallower splays. One of these episodes of prolonged seismic activity, detected at the end of 2013 on a 30-km-long ATF segment, suggest the ATF active role during an aseismic transient unraveled by geodetic data.
    Description: Published
    Description: e2020GL089039
    Description: 2T. Deformazione crostale attiva
    Description: JCR Journal
    Keywords: 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 7
    Publication Date: 2021-05-12
    Description: Speleoseismological research carried out in the Central Apennines (Italy) contributed to understanding the behavior of active normal faults that are potentially able to generate Mw 6.5–7 earthquakes documented by paleoseismology and by historical and instrumental seismology. Radiometric (U‐Th, AMS‐14C, and bulk‐14C) dating of predeformation and postdeformation layers from collapsed speleothems found in Cola Cave indicates that at least three speleoseismic events occurred in the cave during the last ~12.5 ka and were ostensibly caused by seismic slip on one or more of the active faults located in the region surrounding the cave. We modeled the collapse of a tall (173 cm high) stalagmite to find a causative association of this event with one among the potential seismogenic sources. We defined the uniform hazard spectrum (UHS) for each seismogenic source at the site, and we used the calculated spectra in a deterministic approach to study the behavior of the speleothem, through a numerical finite element modeling (FEM). Although our analysis suggests the “Liri” fault as the most likely source responsible for the ground shaking recorded in the cave, the “Fucino” fault system, responsible for a Mw 7 earthquake in 1915, cannot be excluded as a potential source of speleoseismic damage. Results of this work provide new constraints on the seismotectonic history of this sector of Central Apennines and highlight the performance of integrated speleoseismological, seismic hazard, and numerical studies.
    Description: Published
    Description: e2020TC006289
    Description: 6T. Studi di pericolosità sismica e da maremoto
    Description: JCR Journal
    Keywords: Speleoseismology ; Central Apennines ; seismic hazard ; finite element modeling ; 04.04. Geology ; 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 8
    Publication Date: 2021-01-05
    Description: In December 2018, Etna volcano experienced one of the largest episodes of unrest since the installation of geophysical monitoring networks in 1970. The unrest culminated in a short eruption with a small volume of lava erupted, a significant seismic crisis and deformation of the entire volcanic edifice of magnitude never recorded before at Mount Etna. Here we describe the evolution of the 2018 eruptive cycle from the analysis of seismic and geodetic data collected in the months preceding, during, and following the intrusion. We model the space‐time evolution of high‐rate deformation data starting from the active source previously identified from deformation data and the propagation of seismicity in a 3‐D velocity model. The intrusion model suggests emplacement of two dikes: a smaller dike located beneath the eruptive fissure and a second, deeper dike between 1 and 5 kmbelow sea level that opened ~2 m. The rise and eruption of magma from the shallower dike did not interrupt the pressurization of a long‐lasting deeper reservoir (~6 km) that induced continuous inflation and intense deformation of the eastern flank. Shortly after the intrusion, on 26 December 2018, aML4.8 earthquake occurred near Pisano, destroying buildings and roads in two villages. We propose a time‐dependent intrusion model that supports the hypothesis of the inflation inducing flank deformation and that this process has been active since September 2018.
    Description: Published
    Description: e2020GC009218
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: JCR Journal
    Keywords: 2018 Mount Etna Eruption, time‐dependent intrusion model, modelling of high‐rate deformations ; 04.08. Volcanology ; 04.03. Geodesy ; 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 9
    Publication Date: 2020-11-12
    Description: Slope dynamics in volcanic environments comprise a wide spectrum of phenomena, from large lateral collapse to shallow debris remobilization, which may represent a major threat for human communities and infrastructures. Many volcanos built up from the ocean floor and large portions of the volcano edifice are submerged. In these settings, only the edifice’s summit can be investigated by terrestrial remote sensing and in-situ approaches. Growth and destruction, including tectonics and gravitational phenomena, affect entire volcano flanks and are not limited to the physical boundary of the sea level but could comprise their subaqueous parts.
    Description: Published
    Description: 2615–2618
    Description: 6V. Pericolosità vulcanica e contributi alla stima del rischio
    Description: JCR Journal
    Keywords: volcanoes ; flanks ; volcano-tectonics ; structure ; collapse ; stability ; 04.08. Volcanology ; 05.08. Risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 10
    Publication Date: 2020-12-18
    Description: Tectonic styles and distributions of nodal planes are an essential input for probabilistic seismic hazard assessment. As a part of a recent elaboration of a new seismic hazard model for Italy, we adopted a cascade criteria approach to parametrize the tectonic style of expected earthquake ruptures and their uncertainty in an area-based seismicity model. Using available or recomputed seismic moment tensors for relevant seismic events (Mw starting from 4.5), first arrival focal mechanisms for less recent earthquakes, and also geological data on past activated faults, we collected a database for the last ~ 100 yrs gathering a thousand of data all over the Italian peninsula and regions around it. The adopted procedure consists, in each seismic zone, of separating the available seismic moment tensors in the three main tectonic styles, making summation within each group, identifying possible nodal plane(s) taking into account the different percentages of tectonic styles and including, where necessary, total or partial random source contributions. Referring to the used area source model, for several seismic zones we obtained robust results, e.g. along the southern Apennines we expect future earthquakes to be mostly extensional, although in the outer part of the chain strike-slip events are possible. In the Northern part of the Apennines we also expect different tectonic styles for different hypocentral depths. In zones characterized by a low seismic moment release, the possible tectonic style of future earthquakes is less clear and it has been represented using different combination (total or partial) of random sources.
    Description: Published
    Description: 3577–3592
    Description: 6T. Studi di pericolosità sismica e da maremoto
    Description: JCR Journal
    Keywords: 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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