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  • Compositae  (1,944)
  • Photosynthesis  (718)
  • Elsevier  (2,653)
  • Frontiers Media SA  (4)
  • Ecological Society of America  (3)
  • Ambleside, UK  (2)
  • MDPI Publishing
  • 1
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    Frontiers Media SA
    Publication Date: 2024-04-11
    Description: As the world struggles to reduce its dependence on fossil fuels and curb greenhouse gas emissions, industrial biotechnology is also ‘going green.’ Escherichia coli has long been used as a model Gram-negative bacterium, not only for fundamental research, but also for industrial applications. Recently, however, cyanobacteria have emerged as candidate chassis for the production of commodity fuels and chemicals, utilizing CO2 and sunlight as the main nutrient requirements. In addition to their potential for reducing greenhouse gas emissions and lowering production costs, cyanobacteria have naturally efficient pathways for the production metabolites such as carotenoids, which are of importance in the nutraceutical industry. The unique metabolic and regulatory pathways present in cyanobacteria present new challenges for metabolic engineers and synthetic biologists. Moreover, their requirement for light and the dynamic regulatory mechanisms of the diurnal cycle further complicate the development and application of cyanobacteria for industrial applications. Consequently, significant advancements in cyanobacterial engineering and strain development are necessary for the development of a ‘green E. coli’. This Research Topic will focus on cyanobacteria as organisms of emerging industrial relevance, including research focused on the development of genetic tools for cyanobacteria, the investigation of new cyanobacterial strains, the construction of novel cyanobacterial strains via genetic engineering, the application of ‘omics’ tools to advance the understanding of engineered cyanobacteria, and the development of computational models for cyanobacterial strain development.
    Keywords: TP248.13-248.65 ; TA1-2040 ; green E. coli ; engineered cyanobacteria ; Cell factories ; Green chemicals ; Carbon Capture ; Cyanobacteria ; genetically modified cyanobacteria ; sustainable bioproducts ; Photosynthesis ; Biofuels ; thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TC Biochemical engineering::TCB Biotechnology
    Language: English
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  • 2
    Publication Date: 2024-04-05
    Description: Chloroplasts are plant cell organelles that convert light energy into relatively stable chemical energy via the photosynthetic process. By doing so, they sustain life on Earth. Chloroplasts also provide diverse metabolic activities for plant cells, including the synthesis of fatty acids, membrane lipids, isoprenoids, tetrapyrroles, starch, and hormones. The biogenesis, morphogenesis, protection and senescence of chloroplasts are essential for maintaining a proper structure and function of chloroplasts, which will be the theme of this Research Topic. Chloroplasts are enclosed by an envelope of two membranes which encompass a third complex membrane system, the thylakoids, including grana and lamellae. In addition, starch grains, plastoglobules, stromules, eyespots, pyrenoids, etc. are also important structures of chloroplasts. It is widely accepted that chloroplasts evolved from a free-living photosynthetic cyanobacterium, which was engulfed by a eukaryotic cell. Chloroplasts retain a minimal genome, most of the chloroplast proteins are encoded by nuclear genes and the gene products are transported into the chloroplast through complex import machinery. The coordination of nuclear and plastid genome expressions establishes the framework of both anterograde and retrograde signaling pathways. As the leaf develops from the shoot apical meristem, proplastids and etioplastids differentiate into chloroplasts. Chloroplasts are divided by a huge protein complex, also called the plastid-dividing (PD) machinery, and their division is also regulated by many factors to get an optimized number and size of chloroplasts in the cell. These processes are fundamental for the biogenesis and three-dimensional dynamic structure of chloroplasts. During the photosynthesis, reactive oxygen species (ROS) and other cellular signals can be made. As an important metabolic hub of the plant cell, the chloroplast health has been found critical for a variety of abiotic and biotic stresses, including drought, high light, cold, heat, oxidative stresses, phosphate deprivation, and programmed cell death at sites of infection. Therefore, a better understanding the responses of chloroplasts to these stresses is part of knowing how the plant itself responds. Ultimately, this knowledge will be necessary to engineer crops more resistant to common stresses. With the current global environment changes, world population growth, and the pivotal role of chloroplasts in carbon metabolism, it is of great significance to represent the advancement in this field, for science and society. Tremendous progresses have been made in the field of chloroplast biology in recent years. Through concerted efforts from the community, greater discoveries definitely will emerge in the future.
    Keywords: QK1-989 ; Q1-390 ; envelope ; development ; chloroplast ; thylakoid ; Photosynthesis ; Lipid ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PST Botany and plant sciences
    Language: English
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  • 3
    Publication Date: 2024-04-05
    Description: Microbial mat communities consist of dense populations of microorganisms embedded in exopolymers and/or biomineralized solid phases, and are often found in mm-cm thick assemblages, which can be stratified due to environmental gradients such as light, oxygen or sulfide. Microbial mat communities are commonly observed under extreme environmental conditions, deriving energy primarily from light and/or reduced chemicals to drive autotrophic fixation of carbon dioxide. Microbial mat ecosystems are regarded as living analogues of primordial systems on Earth, and they often form perennial structures with conspicuous stratifications of microbial populations that can be studied in situ under stable conditions for many years. Consequently, microbial mat communities are ideal natural laboratories and represent excellent model systems for studying microbial community structure and function, microbial dynamics and interactions, and discovery of new microorganisms with novel metabolic pathways potentially useful in future industrial and/or medical applications. Due to their relative simplicity and organization, microbial mat communities are often excellent testing grounds for new technologies in microbiology including micro-sensor analysis, stable isotope methodology and modern genomics. Integrative studies of microbial mat communities that combine modern biogeochemical and molecular biological methods with traditional microbiology, macro-ecological approaches, and community network modeling will provide new and detailed insights regarding the systems biology of microbial mats and the complex interplay among individual populations and their physicochemical environment. These processes ultimately control the biogeochemical cycling of energy and/or nutrients in microbial systems. Similarities in microbial community function across different types of communities from highly disparate environments may provide a deeper basis for understanding microbial community dynamics and the ecological role of specific microbial populations. Approaches and concepts developed in highly-constrained, relatively stable natural communities may also provide insights useful for studying and understanding more complex microbial communities.
    Keywords: QR1-502 ; Q1-390 ; Metagenomics ; Metabolomics ; chemotrophy ; extremophiles ; microbial mats ; Proteomics ; microsensors ; Diel cycling ; Photosynthesis ; Systems Biology ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical)
    Language: English
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  • 4
    Publication Date: 2024-03-31
    Description: Jules Verne (1828-1905), author of Around the World in Eighty Days (1873) and Journey to the Center of the Earth (1864), wrote in 1875: "I believe that water will one day be used as a fuel, because the hydrogen and oxygen which constitute it, used separately or together, will furnish an inexhaustible source of heat and light. I therefore believe that, when coal (oil) deposits are oxidised, we will heat ourselves by means of water. Water is the fuel of the future". Solar energy is the only renewable energy source that has sufficient capacity for the global energy need; it is the only one that can address the issues of energy crisis and global climate change. A vast amount of solar energy is harvested and stored via photosynthesis in plants, algae, and cyanobacteria since over 3 billion years. Today, it is estimated that photosynthesis produces more than 100 billion tons of dry biomass annually, which would be equivalent to a hundred times the weight of the total human population on our planet at the present time, and equal to a global energy storage rate of about 100 TW. The solar power is the most abundant source of renewable energy, and oxygenic photosynthesis uses this energy to power the planet using the amazing reaction of water splitting. During water splitting, driven ultimately by sunlight, oxygen is released into the atmosphere, and this, along with food production by photosynthesis, supports life on our earth. The other product of water oxidation is “hydrogen” (proton and electron). This ‘hydrogen’ is not normally released into the atmosphere as hydrogen gas but combined with carbon dioxide to make high energy containing organic molecules. When we burn fuels we combine these organic molecules with oxygen. The design of new solar energy systems must adhere to the same principle as that of natural photosynthesis. For us to manipulate it to our benefit, it is imperative that we completely understand the basic processes of natural photosynthesis, and chemical conversion, such as light harvesting, excitation energy transfer, electron transfer, ion transport, and carbon fixation. Equally important, we must exploit application of this knowledge to the development of fully synthetic and/or hybrid devices. Understanding of photosynthetic reactions is not only a satisfying intellectual pursuit, but it is important for improving agricultural yields and for developing new solar technologies. Today, we have considerable knowledge of the working of photosynthesis and its photosystems, including the water oxidation reaction. Recent advances towards the understanding of the structure and the mechanism of the natural photosynthetic systems are being made at the molecular level. To mimic natural photosynthesis, inorganic chemists, organic chemists, electrochemists, material scientists, biochemists, biophysicists, and plant biologists must work together and only then significant progress in harnessing energy via “artificial photosynthesis” will be possible. This Research Topic provides recent advances of our understanding of photosynthesis, gives to our readers recent information on photosynthesis research, and summarizes the characteristics of the natural system from the standpoint of what we could learn from it to produce an efficient artificial system, i.e., from the natural to the artificial. This topic is intended to include exciting breakthroughs, possible limitations, and open questions in the frontiers in photosynthesis research.
    Keywords: QP1-981 ; QK1-989 ; Q1-390 ; chlorophyll f ; kinase ; water oxidation ; thylakoid membrane ; FTIR ; Mass Spectrometry ; reaction center ; photoinhibition ; Photosynthesis ; photoaclimation ; thema EDItEUR::M Medicine and Nursing::MF Pre-clinical medicine: basic sciences::MFG Physiology
    Language: English
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  • 5
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5301 | 1256 | 2011-09-29 15:07:11 | 5301 | Freshwater Biological Association
    Publication Date: 2021-07-09
    Description: The cyanobacteria that cause problems in water supply are principally the colonial forms that are buoyed up by gas vesicles. The success of these organisms is due, in part, to their gas vesicles, which enable them to perform vertical migrations or to maintain themselves in the euphotic zone. The gas vesicles are also the root cause of the problems. In calm periods they cause the cyanobacteria to float to the water surface forming noxious scums, and they may prevent the colonies from sedimenting in water treatment plants. Gas vesicles are hollow, gas-filled structures; they are rigid but can be collapsed by the application of pressure. Their critical collapse pressure is influenced by their dimensions, which vary in different organisms. Gas vesicles are formed by the assembly of two types of protein, which determine their mechanical and physical properties. Methods for collapsing gas vesicles in natural populations of cyanobacteria will be considered. They may have application to the control of cyanobacteria in water supply.
    Keywords: Ecology ; Limnology ; Pollution ; Eutrophication ; Algal blooms ; Gases ; Buoyancy ; Algae ; Bacteria ; Photosynthesis ; Growth ; Competition
    Repository Name: AquaDocs
    Type: book_section , FALSE
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  • 6
    Publication Date: 2022-05-25
    Description: Author Posting. © Ecological Society of America, 2010. This article is posted here by permission of Ecological Society of America for personal use, not for redistribution. The definitive version was published in Ecological Applications 20 (2010): 1569–1582, doi:10.1890/09-0693.1.
    Description: We seek to understand how biophysical factors such as soil temperature (Ts), soil moisture (θ), and gross primary production (GPP) influence CO2 fluxes across terrestrial ecosystems. Recent advancements in automated measurements and remote-sensing approaches have provided time series in which lags and relationships among variables can be explored. The purpose of this study is to present new applications of continuous measurements of soil CO2 efflux (F0) and soil CO2 concentrations measurements. Here we explore how variation in Ts, θ, and GPP (derived from NASA's moderate-resolution imaging spectroradiometer [MODIS]) influence F0 and soil CO2 production (Ps). We focused on seasonal variation and used continuous measurements at a daily timescale across four vegetation types at 13 study sites to quantify: (1) differences in seasonal lags between soil CO2 fluxes and Ts, θ, and GPP and (2) interactions and relationships between CO2 fluxes with Ts, θ, and GPP. Mean annual Ts did not explain annual F0 and Ps among vegetation types, but GPP explained 73% and 30% of the variation, respectively. We found evidence that lags between soil CO2 fluxes and Ts or GPP provide insights into the role of plant phenology and information relevant about possible timing of controls of autotrophic and heterotrophic processes. The influences of biophysical factors that regulate daily F0 and Ps are different among vegetation types, but GPP is a dominant variable for explaining soil CO2 fluxes. The emergence of long-term automated soil CO2 flux measurement networks provides a unique opportunity for extended investigations into F0 and Ps processes in the near future.
    Description: Data collection was possible thanks to NASA, the NSF Center for Embedded Networked Sensing (CCR-0120778), DOE (DE-FG02-03ER63638), CONACyT, UCMEXUS, NSF (EF-0410408), NSF-LTER, KAKENHI (12878089 and 13480150), the Academy of Finland (213093), the Austrian Science Fund (FWF, P18756-B16), the Kearney Foundation, the Canadian Foundation for Climate and Atmospheric Sciences (CFCAS), and the Natural Science and Engineering Research Council of Canada (NSERC). R. Vargas was supported by grant DEB-0639235 during the preparation of this manuscript.
    Keywords: Lags ; Moderate-resolution imaging spectroradiometer (MODIS) ; Photosynthesis ; Soil CO2 efflux ; Soil CO2 production ; Soil CO2 sensors ; Soil respiration
    Repository Name: Woods Hole Open Access Server
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  • 7
    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecosphere 9 (2018): e02337, doi:10.1002/ecs2.2337.
    Description: Camera‐based observation of forest canopies allows for low‐cost, continuous, high temporal‐spatial resolutions of plant phenology and seasonality of functional traits. In this study, we extracted canopy color index (green chromatic coordinate, Gcc) from the time‐series canopy images provided by a digital camera in a deciduous forest in Massachusetts, USA. We also measured leaf‐level photosynthetic activities and leaf area index (LAI) development in the field during the growing season, and corresponding leaf chlorophyll concentrations in the laboratory. We used the Bayesian change point (BCP) approach to analyze Gcc. Our results showed that (1) the date of starting decline of LAI (DOY 263), defined as the start of senescence, could be mathematically identified from the autumn Gcc pattern by analyzing change points of the Gcc curve, and Gcc is highly correlated with LAI after the first change point when LAI was decreasing (R2 = 0.88, LAI 〈 2.5 m2/m2); (2) the second change point of Gcc (DOY 289) started a more rapid decline of Gcc when chlorophyll concentration and photosynthesis rates were relatively low (13.4 ± 10.0% and 23.7 ± 13.4% of their maximum values, respectively) and continuously reducing; and (3) the third change point of Gcc (DOY 295) marked the end of growing season, defined by the termination of photosynthetic activities, two weeks earlier than the end of Gcc curve decline. Our results suggested that with the change point analysis, camera‐based phenology observation can effectively quantify the dynamic pattern of the start of senescence (with declining LAI) and the end of senescence (when photosynthetic activities terminated) in the deciduous forest.
    Description: Priority Academic Program Development of Jiangsu Higher Education Institutions in Discipline of Environmental Science and Engineer in Nanjing Forest University; China Scholarship Council Grant Number: 201506190095; Brown University Seed Funds for International Research Projects on the Environment
    Keywords: Chlorophyll ; Digital camera ; Leaf area index ; Phenology ; Photosynthesis ; Senescence
    Repository Name: Woods Hole Open Access Server
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  • 8
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    Freshwater Biological Association | Ambleside, UK
    In:  http://aquaticcommons.org/id/eprint/5286 | 1256 | 2011-09-29 15:11:58 | 5286 | Freshwater Biological Association
    Publication Date: 2021-07-09
    Description: Mixing and transport processes in surface waters strongly influence the structure of aquatic ecosystems. The impact of mixing on algal growth is species-dependent, affecting the competition among species and acting as a selective factor for the composition of the biocoenose. Were it not for the ever-changing ”aquatic weather”, the composition of pelagic ecosystems would be relatively simple. Probably just a few optimally adapted algal species would survive in a given water-body. In contrast to terrestrial ecosystems, in which the spatial heterogeneity is primarily responsible for the abundance of niches, in aquatic systems (especially in the pelagic zone) the niches are provided by the temporal structure of physical processes. The latter are discussed in terms of the relative sizes of physical versus biological time-scales. The relevant time-scales of mixing and transport cover the range between seconds and years. Correspondingly, their influence on growth of algae is based on different mechanisms: rapid changes are relevant for the fast biological processes such as nutrient uptake and photosynthesis, and the slower changes are relevant for the less dynamic processes such as growth, respiration, mineralization, and settling of algal cells. Mixing time-scales are combined with a dynamic model of photosynthesis to demonstrate their influence on algal growth.
    Keywords: Ecology ; Limnology ; Pollution ; Eutrophication ; Algal blooms ; Phytoplankton ; Nutrients (mineral) ; Freshwater lakes ; Physical limnology ; Models ; Growth ; Photosynthesis ; Water mixing
    Repository Name: AquaDocs
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  • 9
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Blagden, M., Harrison, J. L., Minocha, R., Sanders-DeMott, R., Long, S., & Templer, P. H. Climate change influences foliar nutrition and metabolism of red maple (Acer rubrum) trees in a northern hardwood forest. Ecosphere, 13(2), (2022): e03859. https://doi.org/10.1002/ecs2.3859.
    Description: Mean annual air temperatures are projected to increase, while the winter snowpack is expected to shrink in depth and duration for many mid- and high-latitude temperate forest ecosystems over the next several decades. Together, these changes will lead to warmer growing season soil temperatures and an increased frequency of soil freeze–thaw cycles (FTCs) in winter. We took advantage of the Climate Change Across Seasons Experiment (CCASE) at the Hubbard Brook Experimental Forest in the White Mountains of New Hampshire, USA, to determine how these changes in soil temperature affect foliar nitrogen (N) and carbon metabolism of red maple (Acer rubrum) trees in 2015 and 2017. Earlier work from this study revealed a similar increase in foliar N concentrations with growing season soil warming, with or without the occurrence of soil FTCs in winter. However, these changes in soil warming could differentially affect the availability of cellular nutrients, concentrations of primary and secondary metabolites, and the rates of photosynthesis that are all responsive to climate change. We found that foliar concentrations of phosphorus (P), potassium (K), N, spermine (a polyamine), amino acids (alanine, histidine, and phenylalanine), chlorophyll, carotenoids, sucrose, and rates of photosynthesis increased with growing season soil warming. Despite similar concentrations of foliar N with soil warming with and without soil FTCs in winter, winter soil FTCs affected other foliar metabolic responses. The combination of growing season soil warming and winter soil FTCs led to increased concentrations of two polyamines (putrescine and spermine) and amino acids (alanine, proline, aspartic acid, γ-aminobutyric acid, valine, leucine, and isoleucine). Treatment-specific metabolic changes indicated that while responses to growing season warming were more connected to their role as growth modulators, soil warming + FTC treatment-related effects revealed their dual role in growth and stress tolerance. Together, the results of this study demonstrate that growing season soil warming has multiple positive effects on foliar N and cellular metabolism in trees and that some of these foliar responses are further modified by the addition of stress from winter soil FTCs.
    Description: This research was supported by an NSF Long Term Ecological Research (LTER) Grant to Hubbard Brook (NSF 1114804 and 1637685) and an NSF CAREER grant to PHT (NSF DEB1149929). RSD was supported by NSF DGE0947950, a Boston University (BU) Dean's Fellowship, and the BU Program in Biogeoscience. Jamie Harrison was supported by a BU Dean's Fellowship. Megan Blagden was supported by a BU Undergraduate Research Opportunity Program fellowship. This manuscript is a contribution to the Hubbard Brook Ecosystem Study. Hubbard Brook is part of the LTER network, which is supported by the NSF.
    Keywords: Amino acids ; Chlorophyll ; HPLC ; Inorganic nutrients ; Metabolism ; Photosynthesis ; Polyamines ; Soil freeze-thaw cycles ; Soil warming ; Stress ; Sugars
    Repository Name: Woods Hole Open Access Server
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  • 10
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Journal of Photochemistry and Photobiology B: Biology 19 (1993), S. 61-66 
    ISSN: 1011-1344
    Keywords: Chlorophyll ; Growth promotion ; Lycopersicon esculentum ; Near UV ; Photosynthesis ; Raphanus sativus ; UVA
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Type of Medium: Electronic Resource
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