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  • 550 - Earth sciences
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  • 1980-1984  (19,815)
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  • 1
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    In:  2. Konferenz Fernerkundung, Stand und Entwicklungstendenzen. Fachtagung Photogrammetrie und Fernerkundung | Veröffentlichungen des Zentralinstituts für Physik der Erde ; 76
    Publication Date: 2020-02-12
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  • 2
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    In:  Wolfram in Graniten Ostbayerns | Geologisches Jahrbuch : Reihe D ; 63
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  • 3
    Publication Date: 2020-02-12
    Description: S"SUB g"-amplitudes and periods of 252 European seismic events recorded at GDR and Czechoslovak seismological stations have been measured and their dependence on distance (up to 650km) and azimuth has been analyzed. These will allow reliable local and regional magnitude determination.-after Authors
    Keywords: 550 - Earth sciences
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  • 4
    Publication Date: 2020-02-12
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  • 5
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    In:  Fortschritte der Mineralogie : Beiheft ; Bd. 62, 1
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 6
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 7
    Publication Date: 2020-02-12
    Description: An analysis of the steady-state heat conduction model for the Earth's crust and the upper mantle revealed that the main difficulties in the downward continuation of subsurface geothermal measurements q were connected with an estimation of the heat flow density q"SUB M" at the Moho boundary and of the source distribution f. Solving the steady-state heat conduction equation numerically by means of finite differences (finite elements), we can describe the relation between q, q"SUB M" and f by a linear algebraic system. To overcome the non-uniqueness and instability, a least squares approach is suggested to solve these systems. Bounds for the square-means of the unknown parameters q"SUB M" and f are introduced, whereby it is possible to find solutions with appropriate mean properties. A two-dimensional geothermal profile crossing Central Europe is used to demonstrate this method. The difficulties in estimating reasonable mantle heat flow density and optimal heat source models from geothermal measurements only are pointed out.-Authors
    Keywords: 550 - Earth sciences
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  • 8
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    In:  Fortschritte der Mineralogie : Beiheft ; Bd. 61, 1
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 9
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    In:  Journal of geophysics = Zeitschrift für Geophysik
    Publication Date: 2020-02-12
    Description: In recent years the need for improved seismic risk evaluations in Sweden has led to accurate estimates of detection porbabilities with respect to weak Swedish earthquakes. Generally, these rather low-magnitude events (M"SUB l"4) are recorded only by means of the Swedish Seismograh Station Network (SSSN), currently consisting of 6 permanent stations. Only occasionally do neighbouring Finnish and/or Norwegian stations also contribute with arrival-time readings, hence, for weak regional events, we lack usual reference system of organisations like ISC, NEIS, or EMSC when estimating the detection performance of the SSSN-stations. The main objective of the present short communication is to indicate the ability of the SSSN to detect earthquakes in Sweden and the relative detection contributions from individual network stations. The data used comprise 121 earthquakes located within Sweden and adjacent waters (Wahlström 1978). The statistical model used and other theoretical aspects of the modified approach are discussed in an earlier paper.-Authors
    Keywords: 550 - Earth sciences
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  • 10
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    In:  Zeitschrift für angewandte Geologie
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 11
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 12
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    In:  Exkursionsführer: 'Die Elbtalzone als Teil des Elbe-Lineamentes (Gebiet DDR). Strukturelle Bedeutung und Entwicklung'
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 13
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    In:  Sveriges Geologiska Undersoekning, Serie C, Avhandlingar och Uppsatser. 74; 776
    Publication Date: 2020-02-12
    Description: During the period of January 1977 to December 1979, 22 earthquakes were recorded and located in Sweden and/or adjacent waters by means of the Swedish Seismograph Station Network (SSSN). 8 were felt by residents in the repective areas and hence provide an opportunity for macroseismic investigations. Such investigations are extremely useful for estimating e.g. the depth of rupture and local ground accelerations, especially when teleseismic data and strong-motion records are not available. The long-term average gives approximately 3 earthquakes per year which are reported to be felt by people. In this respect, the seismic activity in Sweden during the years under review is well within the 'normal'. The main objective of the present study is to summarize and interpret available macroseismic observations collected at the Seismological Dept in Uppsala.-P.N.Chroston
    Keywords: 550 - Earth sciences
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  • 14
    Publication Date: 2020-02-12
    Description: The unique solvability of the inverse gravimetric problem for systems of point masses arbitrarily distributed in a bounded region is proved. Using the equivalence of this statement to the linear independence of the corresponding Newtonian potentials for single point masses this proof can be given by means of a generalized momentum representation both in modern potential theory and in classical algebraical manner.-Authors
    Keywords: 550 - Earth sciences
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  • 15
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    In:  Zeitschrift für geologische Wissenschaften
    Publication Date: 2020-02-12
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  • 16
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    In:  Bildmessung und Luftbild
    Publication Date: 2020-02-12
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  • 17
    Publication Date: 2020-02-12
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  • 18
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    Christian-Albrechts-Universität
    Publication Date: 2020-02-12
    Description: Additional keywords: Maxwell body, standard linear solid, absorption band model, seismicity, earthquake migration, plate tectonics, seismic hazard, rupture planes, source parameters, Rheologie, Schichten, Dislokationen, Neigungen, numerische Modelle, Kolumbien, Tuerkei, Nordanatolische Verwerfung, Maxwell-Koerper, Zener, tektonische Spannungen, Seismizitaet, Platten-Tektonik, Erdbeben-Gefaehrdung, Erdbeben-Serie
    Keywords: 550 - Earth sciences
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  • 19
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    In:  2nd International Symposium on the Analysis of Seismicity and on Seismic Hazard (Liblice Castle/Czechoslovakia 1981)
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 20
    Publication Date: 2020-02-12
    Description: The evolution at the W margin of the E Antarctic platforms started with a Precambrian flyschoid formation which is overlain discordantly by Middle Cambrian limestones of an epicontinental environment and which leads to continental sedimentation conditions with acid, subsequent volcanic rocks of probably Cambrian age. A coarsely clastic red molasse without volcanic rocks of probably Upper Devonian age follows. The following evolution in Upper Paleozoic with continuation of the platform character is very incomplete. Tillites of probably Carboniferous age and Permian sandstone-siltstone interstratifications with coal intercalations are known. Structurally a historic, disharmonically superimposed stockwork structure can be detected. The processes of metamorphism which are connected with the Beardmore tectonogenesis at the turn of Precambrian/Cambrian took place in the range of the 'very low metamorphism'. With the younger, intraPaleozoic deformations no regional metamorphism is connected. Deformations which are connected with faults are of different character. Here the degree of biotite formation can be reached. -from Current Antarctic Literature
    Keywords: 550 - Earth sciences
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  • 21
    Publication Date: 2020-02-12
    Description: Presents the time dependence of the statistical parameters alpha and beta describing seismic activity with a high time resolution. alpha stands for temporal event intensity and beta determines the distribution of magnitudes. It was studied whether these parameters are indicative as precursory phenomena predicting large aftershocks within the investigated earthquake sequences (Friuli region in 1976 and a section of the Montenegro sequence in 1979). No precursor effect could be found in the b-value of the quasi-linear Gutenberg-Richter model. b is decreasing abruptly exactly in that point when the computation window includes that large event which shall be found.-from Authors
    Keywords: 550 - Earth sciences
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  • 22
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    In:  Fortschritte der Mineralogie : Beiheft ; Bd. 62, 1
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 23
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    In:  27. I.G.C. Mezhdunarodnyy Geologicheskiy Kongress (Moscow, USSR 1984)
    Publication Date: 2020-02-12
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  • 24
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    In:  18th General Assembly of the International Association of Seismology and Physics of the Earth's Interior (Hamburg 1983)
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  • 25
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    In:  Exkursionsführer zur 31. Jahrestagung der GGW vom 8. bis 12. September 1984 in Freiberg: 'Alter und Altersbestimmung geologischer Erscheinungen und Prozesse - eine Grundlage für die effektive Suche und Erkundung von Lagerstätten mineralischer Rohstoffe'
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 26
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 27
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 28
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    In:  Research results of GDR scientists in Anarctica (1959-1979) = Forschungsergebnisse von DDR-Wisenschaftlern in der Antarktis (1959-1979) | Geodätische und geophysikalische Veröffentlichungen : Reihe I ; 7
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 29
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 30
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 31
    Publication Date: 2020-02-12
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  • 32
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    In:  7th World Conference of Earthquake Engineering (Istanbul 1980)
    Publication Date: 2020-02-12
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  • 33
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    In:  Erdbeben und Erdbebengefährdung
    Publication Date: 2020-02-12
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  • 34
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    In:  Probleme der Paragenese : topical report of IAGOD ; vol. 11 | Freiberger Forschungshefte : C , Geowissenschaften, Lagerstättenlehre ; 374
    Publication Date: 2020-02-12
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  • 35
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    In:  Tectonophysics
    Publication Date: 2020-02-12
    Description: A recent series of Swedish earthquakes at a focal depth not exceeding 2-3km, the largest with I"SUB O" = V+ (MSK scale) and M"SUB L" = 3.2 shows that relatively strong seismic activity can occur in the uppermost part of the Baltic Shield. During the last 15 years several near-surface earthquakes have occurred in this region, as indicated by recorded Rg-waves and/or macroseismic data. Many events are located along the coast of central Sweden, suggesting a seismic belt of minor, near-surface activity, which should be considered in connection with the radioactive waste storage in the Swedish bedrock. The appearance of Rg, common in seismic records of explosions and rockbursts, is not a sufficient discriminator between artificial events and earthquakes. -Author
    Keywords: 550 - Earth sciences
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  • 36
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    In:  Annales Geophysicae
    Publication Date: 2020-02-12
    Description: Station corrections have been introduced into the M"SUB L"-scale hitherto used for Baltic Shield earthquakes. The new formula is valid for Benioff and Grenet seismograph stations in Finland and Sweden. An extension of the magnitude scale to distances as small as 30 km is made by adding the constant 0.31 to the equation. Correlating the instrumental magnitude with macroseismic parameters, a relationship between the radius of areas of perceptibility (km) and maximum intensity has been obtained which is especially useful in quantification of historical earthquakes. For stations of the Finnish Seismic Array (FINSA) equipped with Geotech S13 seismographs, formulae has been obtained from which magnitudes may now be assigned to weak shocks, which were not possible to quantify previously. -from Authors
    Keywords: 550 - Earth sciences
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  • 37
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    Uppsala University, Faculty of Science
    Publication Date: 2020-02-12
    Description: Using data from explosions recorded by the Swedish Seismograph Station Network (SSSN), an average model of two horizontal layers was deduced for the Swedish crust: Layer thicknesses (km): top layer = 10, whole crust = 37; wave velocities (km s"SUP -1"): Pn = 7.87, P"SUP *" = 6.69, Pgl = 6.27, Sn = 4.55, S"SUP *" = 3.69, Sg1 = 3.54, Sg2 = 3.40, Rg = 2.81. A computer program was developed to determine locations of regional seismic events. Assuming a horizontal two-layered crust, arrival times of identified crustal and Moho-refracted waves are given as input. The location accuracy of seismic events using three-dimensional geophone networks was investigated for real and fictitious networks and events. The effects of arrival time and velocity model accuracies, computational method, network geometry and relative location of hypocentre to geophones are quantitatively demonstrated in various examples. - from Author
    Keywords: 550 - Earth sciences
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  • 38
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 39
    Publication Date: 2020-02-12
    Description: On February 13, 1981, a relatively strong earthquake occurred in the Lake Vanern region in south-central Sweden. The shock had a magnitude of M"SUB L" = 3.3 and was followed within three weeks by three aftershocks, with magnitudes 0.5 = or 〈 M"SUB L" = or 〈 1.0. The focal mechanism solution of the main shock indicates reverse faulting with a strike in the N-S or NE-SW direction and a nearly horizontal compressional stress. The aftershocks were too small to yield data for a full mechanism solution, but first motions of P-waves, recorded at two stations, are consistent for the aftershocks. Dynamic source parameters, derived from Pg- and Sg- wave spectra, show similar stress drops for the main shock (2 bar) and the aftershocks (1 bar), while the differences in seismic moment (1.5X10"SUP 20" resp. 4X10"SUP 18" dyne cm), fault length (0.7 resp. 0.2 km) and relative displacement (0.15 resp. 0.03 cm) are significant.-Authors
    Keywords: 550 - Earth sciences
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  • 40
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    In:  Geofizycznych badan w kopalniach, Mogilany, 17 - 19 X 1977 = Some geophysical problems in mines | Publications of the Institute of Geophysics, Polish Academy of Sciences : M, Miscellanea ; 3 = 134
    Publication Date: 2020-02-12
    Description: To detect and to locate the frequently occurring rockbursts within the mining area at Grangesberg, Sweden, the mining company has installed a local network of geophones. Mathematical technique is presented for hypocentre determination assuming a constant velocity model and a three-dimensional network of geophones with high-speed recording. Two sets of input data are feasible: 1) relative P arrival times; 2) S minus P arrival times. The former set requires readings from at least five geophones; for the latter readings from four geophones are sufficient. Factors influencing the resulting location accuracy are studied in various examples. General conclusions and recommendations are given.-Author
    Keywords: 550 - Earth sciences
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  • 41
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    In:  7th World Conference on Earthquake Engineering (Istanbul, Turkey 1980)
    Publication Date: 2020-02-12
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  • 42
    Publication Date: 2020-02-12
    Keywords: 550 - Earth sciences
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  • 43
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    In:  Proceedings of the meeting of the Working Group 4.3 KAPG : Commission of Academies of Sciences of Socialist Countries for Planetary Geophysical Research
    Publication Date: 2020-02-12
    Description: The results of the collection and revision of the seismicity data are presented for the territory of the GDR depicted in epicentral maps. A new map of maximum observed intensities was compiled on the basis of the reinterpretation of the strongest seismic event since 1500, the earthquake of March 6, 1982. -Authors
    Keywords: 550 - Earth sciences
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  • 44
    Publication Date: 2020-02-12
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  • 45
    Publication Date: 2020-02-12
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  • 46
    Publication Date: 2020-02-12
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  • 47
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    In:  Geologiska Föreningen i Stockholm förhandlingar : GFF
    Publication Date: 2020-02-12
    Description: In the years 1963-79, altogether 176 Swedish earthquakes have been detected and located. The earthquakes have occurred within a belt from the SW to the NE part of the country and in N Lapland. Corresponding local magnitudes are not greater than 4. b-values of the magnitude-frequency relation are 0.7 and 1.5 for magnitude intervals 2.2-3.0 and 3.0-3.9, respectively. The strain energy release has been rather regular during most of the time. The apparent increase of small-size shocks in recent years is due to improved instrumental facilities and not to a real increase of seismicity. The presented data can be used as a base for seismotectonic and seismodynamic studies of the Swedish bedrock.-from Author
    Keywords: 550 - Earth sciences
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  • 48
    Publication Date: 2020-02-12
    Description: A procedure for assessing the seismic hazard based on the algorithm proposed by Cornell (1968) and the respective computing programme by McGuire (1976), was applied to the territory of the GDR in view of the influence of 10 earthquake source regions. The delineated regions are described by the cumulative frequency of earthquakes as a function of their intensities and the expected maximum intensities I"SUB max". The intensity attenuation with distance was determined by generalizing the observed macroseismic observations. Hazard maps displaying the expected macroseismic intensities for mean return periods of 100, 500, 5000 and 10 000 years are presented and discussed, explicitly comparing the results with the map of maximum observed intensities of the GDR. -Authors
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  • 49
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    In:  Nuclear Instruments and Methods in Physics Research
    Publication Date: 2020-02-12
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  • 50
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    In:  Geschichte der Seismologie, Seismik und Erdgezeitenforschung : Tagung in Eisenach vom 5. bis 7. Dezember 1979 ; Vorträge | Veröffentlichungen des Zentralinstituts für Physik der Erde ; 64
    Publication Date: 2020-02-12
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  • 51
    Publication Date: 2020-02-12
    Description: On December 23, 1979 an earthquake sequence occurred near Bergshamra-Roslagen, Sweden, about 50km northeast of Stockholm. The main shock has been assigned a magnitude M"SUB L" = 3.2. A six- week field survey in the epicentral area revealed a number of small aftershocks located close to the main shock. Pg and Pn-readings suggest for the main shock reverse faulting with a strike of N36"SUP o"E and a dip of 55"SUP o" to the SE. Spectral analysis applied to available seismograms from Finnish, Norwegian and Swedish stations gave for the dynamic source parameters a fault length of 0.8km, a seismic moment estimate of 6.6 x 10"SUP 20" dyne cm and a stress drop of 6 bars. The Bergshamra sequence took place in a zone of very low seismicity in eastern central Sweden and for Swedish earthquakes at unusual shallow depth. The observed earthquake sequence suggests that the known fault system in this area represents a seismically active region. -Authors
    Keywords: 550 - Earth sciences
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  • 52
    Publication Date: 2020-02-12
    Description: Station corrections have been introduced into the M"SUB L"-scale hitherto used for Baltic Shield earthquakes. This increases the consistency of the scale. The new formula has the design: M"SUB L"(UPP) = log a + log V(T) + 1.61 log DELTA - 3.22 + C"SUB I" + C"SUB s", where a = ground amplitude (mu m), V(T) = Wood-Anderson short-period seismometer magnification at period T, DELTA = epicentral distance (km), C"SUB I" = instrument type constant and C"SUB s" = station correction. The formula is valid for Benioff and Grenet seismograph stations in Finland and Sweden. An extension of the magnitude scale to distances as small as 30km has been made.-from Authors
    Keywords: 550 - Earth sciences
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  • 53
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    In:  Vortrags- und Exkursionstagung der GGW (Greifswald 1982)
    Publication Date: 2020-02-12
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  • 54
    Publication Date: 2020-02-12
    Description: Near the E edge of Leipzig (GDR) an earthquake occurred on February 20, 1982, with an epicentral intensity of 5o. The last comparable earthquakes in this area were observed in 1905 and 1914. These events and the seismic activity of the focal region 'Northwest Saxonia' are presented. The source parameters of the 1982 earthquake determined from the polarities and the spectra of different wave types are given.-from Authors
    Keywords: 550 - Earth sciences
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  • 55
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    In:  1. Konferenz Fernerkundung, Stand und Entwicklungstendenzen : Beiträge zur Konferenz | Veröffentlichungen des Zentralinstituts für Physik der Erde ; 74
    Publication Date: 2020-02-12
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  • 56
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    In:  Proceedings of the Meeting of the Working Group 4.3, KAPG : Bratislava, Oct. 1-6, 1979
    Publication Date: 2020-02-12
    Description: Highly industrialized and densely populated territories such as the GDR necessitate to consider very small probabilities of the occurrence of potentially damaging earthquakes. A concept was developed for the assessment of the seismic regime in the GDR. This concept as well as some first results are presented. Especially a possible connection between the seismicity level of a seismotectonic unit and its maximum earthquake will be discussed. -Author
    Keywords: 550 - Earth sciences
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  • 57
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    In:  Freiberger Forschungshefte : C ; 370 : Geowissenschaften, Lagerstättenlehre
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    Keywords: 550 - Earth sciences
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    In:  Seismological Section Report ; 3-84
    Publication Date: 2020-02-12
    Description: Using Sg-amplitudes measured at GDR and Czechoslovak stations from earthquakes in Central Europe and the surrounding area, and magnitudes given by various stations and agencies for the same events, calibration functions modelled to contain separated components of geometrical spreading (r"SUP -n") and anelastic attenuation (e"SUP -br/T") have been derived. Obtained b-values show significant variation for different spreading types, but surprisingly small scatter, for any given spreading type, for different geographical regions (sectors). Derives a magnitude formula applicable to short-period vertical-component seismograph readings at stations BRG, CLL, MOX, KHC and PRU. Epicentral distances should be greater than 100 km. The attenuation of Sg- waves in the Central European crust can be described by a mean value of Q = 230. -after Authors
    Keywords: 550 - Earth sciences
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  • 60
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    In:  Gerlands Beiträge zur Geophysik
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    Keywords: 550 - Earth sciences
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  • 62
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    In:  Symposium 'Prediction of Earthquake and Seismic Hazard' (Bucarest 1983)
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  • 63
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    In:  Proceedings of the seventeenth assembly of the European Seismological Commission : Budapest, 24 - 29 Aug. 1980 | Developments in solid earth geophysics ; 15
    Publication Date: 2024-01-05
    Keywords: 550 - Earth sciences
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  • 64
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    Environmental management 7 (1983), S. 151-160 
    ISSN: 1432-1009
    Keywords: Grass carp ; Biological control ; Nuisance aquatic weeds ; Fisheries ; Aquaculture ; Reproductive requirements ; Arkansas management plan ; Sterile hybrids
    Source: Springer Online Journal Archives 1860-2000
    Topics: Energy, Environment Protection, Nuclear Power Engineering
    Notes: Abstract Grass carp (Ctenopharyngodon idella Val.) were introduced into the United States in 1963 as potential biological control agents for nuisance aquatic weeds. Since that time an oftentimes bitter controversy has raged over its effects on sportfishing, and its possible natural reproduction and naturalization in North America. This review considers the history, ecology, and present status of grass carp in the United States in light of the voluminous scientific research conducted since its importation. Particular attention is given to the role of grass carp in the fisheries management plans of Arkansas. Recent development of a sterile, triploid grass carp hybrid may lead to widespread use of grass carp to control nuisance aquatic weeds in culturally eutrophicated waters of the United States.
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  • 65
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    Environmental biology of fishes 7 (1982), S. 177-180 
    ISSN: 1573-5133
    Keywords: Temperature ; Behavior ; Ecology ; Fisheries ; Fish ; Marine juveniles
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Synopsis Sixteen yearling winter flounder, tested individually for 3-day periods in electronic shuttleboxes, voluntarily occupied an 8–27°C range of temperature, with a modal final thermal preferendum of 18.5°C (mean 18.7°C, median 19°C, midpoint 17.5°C, s.d. 1.9°C, S k + 0.33). The locomotor activity pattern of the yearling fish in the laboratory was markedly nocturnal, with mean hourly nocturnal activity exceeding mean hourly diurnal activity by a factor of 3.4. Maximum activity occurred at 0300 EST, minimum activity at 1400 EST. While activity generally increased with temperature, a local activity minimum occurred at 18.7°C, coinciding with the 24-hour mean final thermal preferendum. Comparison of these laboratory data with previously published field data suggest that behavioral responses to temperature and light play significant roles in determining age- and size-specific differences in seasonal depth stratification and onshore-offshore distributions in this species.
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  • 66
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    Biopolymers 19 (1980), S. 823-831 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The effect of the DNA-binding oligopeptide distamycin A on the B to A transition of DNA in ethanol/water solutions has been studied by means of CD. (The overbars indicate that it does not matter which particular form of the corresponding families is considered.) The results show that increasing the concentration of distamycin A reverses the A conformation (in 82% ethanol) to the B conformation due to its strong binding and stabilization of the latter. In accordance with previous data for pure aqueous solutions, a site size of 3.5 base pairs is obtained from the studies in water/ethanolic solutions. From the data on the B to A transition in the presence of distamycin A, we estimated the length of the cooperativity ν0 = 10 base pairs.The results demonstrate that the oligopeptide systems of distamycin, as well as those of netropsin, are effective stabilizers of the DNA B-conformation.
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  • 67
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Tetrapeptides with proline in position 2, asparagine or leucine in position 3, and glycine in positions 1 and 4, with end groups free or blocked on the N-terminal side, were studied in their various ionic states in 2H2O and in Me2SO-d6 by 1H- and 13C-nmr. In order to clarify or refine some details, successive substitutions of the residues in these peptides with amino acids enriched to 85% in 13C, or to 85% 13C plus 97% 2H were carried out. The 1H and 13C chemical shifts as well as the 1H-1H, 13C-13C, and 13C-1H coupling constants and the signal intensities show strong similarity of behavior between the tetrapeptides of asparagine and leucine. The main conformational characteristics are (1) the almost total stabilization of the trans conformer in the type I β-turn structure when the peptide is in the zwitterion state dissolved in Me2SO. This is deduced from the 3JC3αH-N3H and the 3JC2′-H3α coupling constants, which both furnish a dihedral angle of φ3 = -90°, and from the positive value of the temperature coefficient of the glycine-4 amide protons, which suggests a type 4 → 1 hydrogen bond; (2) the evolution of cis and trans isomer fractions which change with the ionic state of the peptides in Me2SO, whereas they remain constant in aqueous solution; and (3) the conformation of the pyrrolidine ring as it follows the variations in cis:trans isomer populations together with the side-chain rotamer fractions of the residue in position 3. In the β-turn conformation the isomer cis is less abundant and the pyrrolidine ring is more flexible; this explains the perfect accommodation of the proline residue in position 2 of a bend. The interdependence of these phenomena where interactive forces play a predominant role underlines the importance of cooperative effects in the molecule. The results also suggest that the cis isomer of proline can adapt itself just as well as the trans isomer to position 2 of a type I β-turn.
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  • 68
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An algorithm is presented for the Monte Carlo simulation of the decay of fluorescence polarization from segmentally flexible molecules. Based on the random walk model of Brownian motion, the treatment explicitly follows the stochastic changes in the diffusion coefficients as the molecule bends. It includes the effects of a linear restoring force opposing the bending and the effects of hydrodynamic coupling between the translational, rotational, and bending motions. One application is presented: the simulation of anisotropy decay curves for hinged rods. A variety of decay curves are obtained, including single- and multiexponential behavior, and the following conclusions are reached: (1) increasing the flexibility is usually, but not always, accompanied by a more rapid rate of depolarization; (2) reducing the size of the fluorescent subunit will usually, but not always, increase the rate of depolarization; and (3) the complex interplay between the effects of molecular shape, relative sizes of the subunits, restoring force, and orientation of the transition dipoles renders it unlikely that any simple method can be used to interpret anisotrophy data without simulation. In particular, it is not possible to determine the extent of bending by fitting the data with the two-exponential approximation used by some investigators in the past.
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  • 69
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    Biopolymers 19 (1980), S. 977-990 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: 13C-nmr spectra of red seaweed galactans, belonging to the agar and carrageenan groups or having the “intermediate” type of structure, were interpreted on the basis of 13C-nmr spectra of model compounds. Signal assignments have been made for most of the known extreme structures of such galactans. 13C-nmr spectroscopy was shown to be a rapid and convenient method of structural analysis, which permits one to determine the type of galactan structure, the absolute configurations of its constituents (galactose and 3,6-anhydrogalactose), and the positions of the sulfate and O-methyl groups in a polysaccharide molecule.
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  • 70
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The dielectric response of human umbilical cord hyaluronic acid in various environments has been studied at microwave frquencies using a resonant microwave cavity as a probe. Both the real and imaginary parts of complex dielectric constant and the loss tangent for hyaluronate solutions are obtained by utilizing equations for perturbation of a resonant cavity. Dielectric changes at room temperature have been observed in aqueous solutions of hyaluronic acid as a function of concentration ranging from 0 to 350 mg/ml. The data indicate the existence of ordered phases in hyaluronate solutions at selective concentrations, that is, exhibiting lyotropic-type transitions. Hyaluronate solutions at 1.5 and 3 mg/ml concentrations have been studied at various pH in the range of 6-8 and at constant ionic strength 0.1. A temperature-dependent transition in hyaluronate solution of 120 mg/ml concentration has been observed at physiological temperature. It is shown that this temperature-dependent behavior can be related to the orientational polarizability term in the Debye theory of polar molecules in liquids.
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  • 71
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    Biopolymers 19 (1980), S. 945-964 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In 1974, Zimm described a theory which predicts that the sedimentation coefficient of high-molecular-weight DNA will decrease as the rotor speed of measurement increases. In 1979, this theory was revised, and the new formula predicts speed-dependence effects that are substantially smaller than the predictions of the original version. This report describes the results of subjecting both the original and the revised versions of the theory to quantitative tests using a well-defined sucrose-gradient system and a DNA of known molecular weight (T4c DNA). T4c bacteriophage is a mutant, whose DNA contains the unmodified base cytosine, instead of the glucosylated hydroxymethylcytosine characteristic of the T-even bacteriophages, and has a molecular weight of 115 ± 3 × 106. The DNA of the wild-type phage (T4D+) was also used in some experiments.In addition to the quantitative tests, the experiments test for an effect first observed by Rubenstein and Leighton, which showed that the sedimentation coefficient measured for T2 DNA depended on the composition of the centrifuge tube used for the measurement (tube composition effect). It can be inferred from this observation that an interaction occurs between particle and tube wall during sedimentation, and this leads to a reduction in sedimentation velocity independent of the reduction in S described by Zimm's theory.The results show that in the range of 25,000-50,000 rpm, the original but theoretically incorrect form of the theory quite accurately describes the sedimentation behavior of both T4c and T4D+ DNA, although T4D+ was a special case in some respects. The revised (corrected) form of the theory predicts much less of a speed-dependence effect than that actually observed. The discrepancy between corrected theory and observation suggests that other factors (perhaps arising from the use of the swinging bucket rotor geometry) are causing the additional observed reduction in S20,w. However, the experiments show that the tube composition effect does not seem to be one of these.
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  • 72
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The fixation of cis (NH3)2Cl2Pt(II) to poly(I)·poly(C) leads to the formation of two complexed species. One involves coordination to a single base (accounting for about 70% of the total platinum bound over the rb range 0.07-0.25) and the other to two bases which are not adjacent to each other but may be on the same strand and separated by a loop. Reaction of the platinum compound with poly(I) gives in addition to the above two species a minor one (about 15%, independent of rb over the range 0.05-0.30) in which the platinum is bound to two adjacent bases. The availability of such coordination reduces the dominance of the 1:1 species, which, however, remains the major one (ca. 55%).
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  • 73
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    Biopolymers 19 (1980), S. 1329-1344 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The complex of CH3Hg(II) with the accessible cysteines of glyceraldehyde-3-phosphate dehydrogenase (GAPD, EC 1.2.1.12) from rabbit muscle has been studied by phosphorescence and optically detected magnetic resonance (ODMR) spectroscopy. The wavelength dependence of the phosphorescence decay kinetics has also been measured. Comparison of CH3Hg(II)-GAPD with GAPD by these methods shows that a specific optically resolved tryptophan site of GAPD is perturbed by the interaction with a nearby mercury atom. The perturbation on the luminescence and ODMR properties is typical of an external heavy-atom effect. Based on the x-ray diffraction structure of the lobster enzyme, it is proposed that the heavy-atom effect results from the interaction of tryptophan-310 with CH3Hg(II) bound to cysteine-281 in the rabbit muscle enzyme.
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  • 74
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    Biopolymers 19 (1980), S. 1415-1434 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The energy of interaction of a spermine molecule with the A- and B-forms of DNA has been calculated, assuming that the molecule of spermine is fixed in the narrow groove of the DNA helix with the formation of hydrogen bonds between the amino groups of spermine and the phosphate groups of DNA. The atom-atom potentials method was used. Optimal structures for the A-DNA-spermine and B-DNA-spermine complexes are suggested. It is shown that, in agreement with the experimental data, the interaction of the spermine molecule with the A-DNA is energetically more favorable than that with the B-DNA. Two main factors are responsible for this: (1) the distance between neighboring phosphates of the chain in A-DNA (which is about 1 Å less than that in B-DNA) corresponds better to the distance between the amino groups of the propyl part of spermine; and (2) the orientation of phosphate groups in A-DNA inside the groove is preferable for complex formation with spermine to the outside groove arrangement of the phosphates in B-DNA. These conclusions are further confirmed by the calculations for DNA-propane diamine complexes.
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  • 75
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The crystal structure of a synthetic analog of valinomycin, cyclo[-(D-Ile-Lac-Ile-D-Hyi)3-] (C60H102N6O18), has been determined by x-ray diffraction procedures. The crystals are orthorhombic, space group P212121, with cell parameters a = 11.516, b = 15.705, c = 39.310 Å, and Z = 4. The atomic coordinates for the C, N, O atoms were refined in the anisotropic thermal motion approximation and for the H atoms in the isotropic approximation. Values of standard (R) and weighted (Rw) reliability factors after refinement are 0.073 and 0.056, respectively. The structure is completely asymmetric. The cyclic molecular backbone is stabilized by six intramolecular hydrogen bonds N—H…O=C, five bonds being of the 4→1 type and one being of the 5→1 type. The side chains are located on the molecular periphery. The conformational state of isoleucinomycin in the crystal is intermediate between the corresponding crystalline states of valinomycin and meso-valinomycin. The observed conformation suggests that complexation could proceed via entry of the ion at the face possessing the L-Lac residues, the less crowded face.
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  • 76
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    Biopolymers 19 (1980), S. 1555-1566 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Possible conformations of lacto-N-tetraose, lacto-N-neotetraose, related disaccharides, and other milk oligosaccharides have been studied by an energy-minimization procedure using empirical potential functions. Lacto-N-tetraose favors a “curved” conformation, while lacto-N-neotetraose favors an approximately “straight” conformation. These two conformations differ mainly in the position of the terminal galactose residue with respect to the rest of the molecule. This difference explains the greater strength of lacto-N-neotetraose compared with lacto-N-tetraose in its ability to inhibit the cross-reaction of blood group P1 fractions with Type XIV pneumococcal antipolysaccharide. Although the favored conformation of lacto-N-tetraose (inactive) agrees with the model proposed by the earlier workers, that for lacto-N-neotetraose (active) differs. The favored conformations for the disaccharides galactose-β(1-4)-N-acetylglucosamine, galactose-β(1-3)-N-acetylglucosamine, and lactose are similar in overall shape, differing only in the nature and orientation of the side groups. This explains their nearly equal inhibitory activity. These theoretical models also explain the increased activity of lacto-N-fucopentaose I over that of lacto-N-tetraose and the relative activities of the substituted lactoses. The present studies suggest that it is the overall shape of the molecule which is important for activity, rather than the terminal β(1-4)-linked galactose residue alone.
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  • 77
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    Biopolymers 19 (1980), S. 1571-1585 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: 13C spin-lattice relaxation times of poly(L-lysine) have been obtained at 67.9 MHz in aqueous solution and in a mixed solvent (40% methanol/60% water). A concomitant determination of the conformation by CD permits the correlation of conformation and rotational diffusion of the polymer. The dependence on pH of the spin-lattice relaxation times of the 13Cα and the side-chain carbon resonances reflects the diffusional motion in the random-coil conformation, in the helix-coil transition, and in the conformation of the α-helix. In the mixed solvent the reorientational correlation time of the Cα-Hα vector increases from τ = 0.37 nsec (random coil) to τ = 12.0 nsec (α-helix). In aqueous solution the correlation time of this vector increases from τ = 0.33 nsec (random coil) to τ ≫ 11 nsec. The reorientation rates of the side-chain methylene groups in the two solvents are markedly different. The reorientation of all methylene groups is reduced in the mixed solvent.
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  • 78
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The solid-state conformation of copolymers of β-benzyl-L-aspartate [L-Asp(OBzl)] with L-leucine (L-Leu), L-alanine (L-Ala), L-valine (L-Val), γ-benzyl-L-glutamate [L-Glu(OBzl)], or ∊-carbobenzoxy-L-lysine (Cbz-L-Lys) has been studied by ir spectroscopy and circular dichroism (CD). The ir spectra in the region of the amide I and II bands and in the region of 700-250 cm-1 have been determined. The results from the ir studies are in good agreement with data obtained by CD experiments. Incorporation of the amino acid residues mentioned above into poly[L-Asp(OBzl)] induces a change from the left-handed into the right-handed α-helix. This conformational change for the poly[L-Asp(OBzl)] copolymers was observed in the following composition ranges: L-Leu, 0-15 mol %; L-Ala, 0-32 mol %; L-Val, 0-8 mol %; L-Glu(OBzl), 3-10 mol %; and Cbz-L-Lys, 0-9 mol %.
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  • 79
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    Biopolymers 19 (1980), S. 1667-1673 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Dry purified ligamentum nuchae elastin has been investigated for physical aging. The samples were quenched from a temperature (197°C) close to the softening point to a number of measuring temperatures ranging from -20 to +180°C. At each temperature, the small-strain torsional creep properties were determined at a number of elapsed intervals after the quench. Aging effects were found over the whole temperature range, and the creep and aging behavior of elastin turned out to be very similar to that of synthetic polymers.
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  • 80
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 81
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    Biopolymers 19 (1980), S. 1705-1713 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Covalently closed circular DNA can exist in different configurations known as circular, toroidal, and interwound. Changes among these forms can be made in several ways, including the insertion of dye molecules between adjacent base pairs, which tends to untwist the double-helical structure. The aim of this paper is to discuss these configurations, and the changes among them, in the context of classical elastomechanics. The concepts of twisting, linkage and writhing are explained. Simple experiments on a twisted linear-elastic rod are described, and it is shown that although the circular and interwound forms may be modeled in this way, the toroidal form does not occur, being mechanically unstable. Theoretical energy calculations by Levitt on bent and twisted DNA show that DNA exhibits a particular kind of nonlinear elasticity in which there is an unusual coupling between bending and twisting. The aim of the paper is to show qualitatively that this special kind of elasticity can stabilize the toroidal form of closed circular DNA.
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  • 82
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    Biopolymers 19 (1980), S. 1357-1374 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Light-scattering, viscosity, and sedimentation experiments on aqueous solutions of k-carrageenan show that this sulfated polygalactose is an expanded flexible random coil. This expansion is due to long-range interactions that are predominantly electrostatic. Extrapolation of viscosity data to infinite ionic strength provided values for the intrinsic viscosity which were subjected to the Stockmayer-Fixman analysis, giving a value for the Mark-Houwink coefficient under theta-conditions, Kθ, of 0.27. The characteristic ratio, C∞, under these conditions is 7.8, and the conformation factor σ is 2. In a solution of 0.118 ionic strength, where a Mark-Houwink exponent aη of 0.86 is found, the radii of gyration calculated from viscosity data are lower than those found from the angular dependence of scattered light. On the other hand, the radius of gyration found from the sedimentation rate agrees well with the light-scattering radius. The relations between molecular parameters are corrected for the poly-dispersity of the sample.
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    Biopolymers 19 (1980), S. 1407-1414 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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    Biopolymers 19 (1980) 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
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    Biopolymers 19 (1980), S. 1475-1489 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: An approximate analytic expression for the translational friction coefficient of a toroid modeled as a continuous shell of frictional elements is derived using the Kirkwood approximation. The accuracy of this expression was determined by comparing the friction coefficients predicted by it to those predicted by extrapolated shell-model calculations using the modified Oseen tensor. To show that these calculations do indeed yield the correct friction coefficients, actual translational friction coefficients were determined by observing settling rates of macroscopic model rings or toroids in a high-viscosity silicone fluid. Our conclusion is that the approximate expression yields friction coefficients that are about 1.5-3% low for finite rings. For thin rings, a comparison is also made with the exact result of Yamakawa and Yamaki [J. Chem. Phys. 57, 1572 (1972); 58, 2049 (1973)] for the translational friction of plane polygonal rings. This comparison shows that the approximate expression yields results which are low by 2-3% unless the rings are extremely thin, in which case the error is larger. In the limit of an infinitely thin ring the approximate expression reduces to the Kirkwood result [J. Polym. Sci. 12, 1 (1954)], which is low by 8.3%. We discuss briefly how this work may be useful in determining the structure of DNA compacted by various solvent-electrolyte systems and polyamines.
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  • 86
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    Biopolymers 19 (1980), S. 1451-1474 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Internal Brownian motions of clean φ29 and λ-DNAs have been studied using photon-correlation techniques at both visible (λ0 = 632.8 nm) and uv (λ0 = 363.8 nm) wavelengths. The present dynamic light scattering data, which extend to K2 = 19 × 1010 cm-2, can in every case be satisfactorily simulated by a Rouse-Zimm model polymer with an appropriate choice of the three model parameters. The effects of pH, salt concentration, single-strand breaks, and molecular weight on those model parameters have also been investigated. Intact clean DNAs exhibit surprisingly little variation with pH from 7.85 to 10.25, with salt concentration from 0.01 NaCl to 5.4M NH4Cl, or with molecular weight or GC content. The single-strand breaks have no effect at pH 9.46, but produce dramatic changes in the model parameters at pH 10.0 and 10.25, indicating the introduction of titratable joints at those pHs. The failure of either single-strand breaks or a large change in GC content to alter the model parameters in the neutral pH range is a strong indication that local denaturation is not required for those flexions and torsions that dominate the relaxation of fluctuations in the scattered light. The Langevin relaxation time for the slowest internal mode of a particular Rouse-Zimm model derived from the dynamic light scattering data is compared with pertinent literature data extrapolated to the same molecular weight. The present algorithm for determining model parameters from the light-scattering Dapp vs K2 curve actually yields a Langevin time in fairly good agreement with the literature value. For unknown reasons the light-scattering D0 values generally exceed those obtained from the molecular weight and sedimentation coefficient by about 20%.
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  • 87
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    Biopolymers 19 (1980), S. 1507-1515 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Raman spectra of polyribouridylic acid excited in the uv region, from 363 to 290 nm, are reported. The conformational changes of the polymer from random coil to ordered structure with stacked bases at high and low temperature, respectively, are reflected by important changes in the Raman line intensities; this Raman hypochromism is itself a function of the excitation wavelength - its profile has been determined and shows negative values in the region of 290 nm (near resonance), i.e., hypochromism becomes hyperchromism. Thus the knowledge of the hypochromism excitation profile is important in following order-disorder transition of a polymer using resonance Raman spectroscopy. Theoretical attempts are proposed for explanation, involving not only the relative variations of the molar extinction coefficient on the order-disorder transition of the polymer, but also the damping factors of the vibronic levels. The theoretical curve is found to fit adequately the experimental data over the excitation range, using only the frequency of the O-O transition of uracil and a vibronic linewidth of 2200 cm-1.
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  • 88
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    Biopolymers 19 (1980), S. 2177-2190 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The preferential interaction of sodium poly(α-L-glutamate) and poly(α-L-glutamic acid) with the solvent components in water/2-chloroethanol mixtures has been determined using density-increment measurements. The degree of preferential interaction was deduced from the density increments at constant molality of 2-chloroethanol and at constant chemical potential of 2-chloroethanol. Sodium poly(α-L-glutamate) and poly(α-L-glutamic acid) are both preferentially hydrated in the whole range of solvent composition. A dehydration process occurs during the 2-chloroethanol-induced coil-to-helix transition of sodium poly(α-L-glutamate). This dehydration process was attributed to the release of some moles of water from the neighborhood of the peptide bond during the nucleation of the helix. After the conformational transition, sodium poly(α-L-glutamate) is solvated by one 2-chloroethanol molecule. The location of water and 2-chloroethanol molecules in the different parts of the residue (more polar and less polar portions) is also discussed.
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  • 89
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    Biopolymers 19 (1980), S. 2223-2245 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Complex formation between tryptamine and mononucleotides and dinucleoside phosphates containing adenine and/or cytosine has been studied at five pD's ranging from 1.1 to 7.4 by proton magnetic resonance spectroscopy. Chemical shifts of base ring protons and the ribose anomeric proton in the nucleotides and indole ring protons in tryptamine were monitored and their changes with pD and intermolecular interactions interpreted qualitatively. Stacked complexes were found to exist at all pD's in the range studied. Complex geometries differ depending on pD. An electrostatic interaction between the tryptamine amino group and the nucleotide phosphate group contributes to complex formation above pD 4 but is not strong enough to shift the dinucleoside phosphate equilibrium towards the unstacked conformer.
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  • 90
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    Biopolymers 20 (1981), S. 169-185 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The IR data for the R1 CO-O-CHR2-CO-NHR3 derivatives are interpreted in terms of a H…π interaction involving the N—H bond and the π orbitals of the ester function and giving rise to a high ν(C=O) frequency and a low ν frequency. The resulting molecular conformation corresponds to the angular values φ # -90°, ψ # 0°. The H…π interaction in MeCO-L-Lac-NHMe is highly destabilized by water and aprotic solvents but is retained in methanol. Considering the high ν(C=O) ester or amide frequency of the middle function in β-folded depsipeptide or peptide sequences, it may be supposed that the residue indexed i + 2 in β turns experiences a H…π interaction which has a stabilizing effect on β turns. Some examples concerning valinomycin and some model compounds are discussed.
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  • 91
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    Biopolymers 20 (1981) 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 92
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    Biopolymers 20 (1981), S. 251-268 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The difference between the theories of Manning, on the one hand, and of Odijk and Skolnick and Fixman, on the other, for the polyelectrolyte contribution to the persistence length of DNA is shown to arise entirely from a subtle geometrical error in the theory of Manning. The corrected theory of Manning predicts a negligible polyelectrolyte contribution in 1.0M NaCl and only 33 Å in 0.01M NaCl, thus giving a change in total persistence length by a factor of only 1.07 over that range, in agreement with Odijk. Pertinent data in the literature indicate that the persistence length must change by a factor of ≤ 1.6 between 1.0 and 0.01M NaCl, and very likely by less than a factor of 1.4. Evidently, the intrinsic rigidity of the uncharged double-strand filament dominates the bending rigidity at NaCl concentrations above 0.01M.
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  • 93
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The crystal structures of L-3,4-dehydroproline, t-butoxycarbonyl-L-3,4-dehydroproline amide, and acetyl-L-3,4-dehydroproline amide have been determined. L-3,4-Dehydroproline is orthorhombic with a = 16.756, b = 5.870, c = 5.275 Å, and Z = 4; t-butoxycarbonyl-L-3,4-dehydroproline amide is orthorhombic with a = 6.448, b = 8.602, c = 21.710 Å, and Z = 4; acetyl-L-3,4-dehydroproline amide is monoclinic with a = 4.788, b = 10.880, c = 7.785 Å, β = 105.25°, and Z = 2. The final R value for the L-3,4-dehydroproline is 0.046 based on 529 reflections; for t-butoxycarbonyl-L-3,4-dehydroproline amide, 0.050 based on 792 reflections; and for acetyl-L-3,4-dehydroproline amide, 0.058 based on 632 reflections. The structures clearly establish that the free amino acid exists in the zwitterionic form in the crystalline state. The molecular conformations of the t-Boc and acetyl derivatives consist of two planes: one involving the primary amide and the other the remaining atoms of the molecule. The acetyl-L-3,4-dehydroproline amide contains a tertiary amide bond in the cis conformation. To the best of our knowledge, this is the first example of a cis bond in an acetyl derivative of an amino acid or peptide. At variance with the previously reported proline amides, which present φ and ψ values corresponding to those of a right-handed α-helical conformation (conformation A), the t-Boc and acetyl derivatives both have φ and ψ values corresponding to a collagenlike conformation (conformation F).
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  • 94
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    Biopolymers 20 (1981), S. 359-371 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The structure of thermally denatured Type I collagen has been studied using laser light scattering. The results indicate that the diffusion coefficients of α-chains and β- and γ-components are 1.550 ± 0.08 × 10-7, 1.000 ± 0.05 × 10-7, and 0.835 ± 0.04 × 10-7 cm2/sec, respectively, at temperatures between 20 and 40°C. It is concluded from diffusion data that these species have hydrodynamic radii of about 13.8 nm (α-chain), 21.5 nm (β-component), and 25.7 nm (γ-component), consistent with previous studies of thermal denaturation by light scattering. It is also concluded, based on volume calculations, that a large volume increase occurs when the triple helix unfolds. Homodyne correlation functions for two component mixtures of α-chains and β-and γ-components appeared to decay exponentially. In all but one case discussed the correlation function could be fitted with a single component having a translational diffusion coefficient which was an intensity weighted average of the diffusion coefficient of each component present.
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  • 95
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    Biopolymers 20 (1981), S. 387-397 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Circular dichroic spectra and oscillator strengths of the π-π transition near 190 nm are calculated for helical (Gly)6 and (Ala)6 at 30° intervals of the backbone torsion angles (φ,ψ) over the range -180° ≤ φ ≤ -60°, -60° ≤ ψ ≤ 180°, using the partially dispersive normal mode treatment of the dipole interaction model. Polarizabilities of atoms and the NC′O group are those determined semiempirically in previous studies. Calculations for (Ala)6 at (φ,ψ) angles corresponding to the α-helix, the poly(Pro) II helix, a collagen single helix, a poly-(MeAla) helix, and single β-helices are found to agree well with most of the available experimental data.
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  • 96
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The interaction of the fluorinated antimalarial drug fluoroquine [7-fluoro-4-(diethyl-amino-1-methylbutylamino)quinoline] with DNA, tRNA, and poly(A) has been investigated by optical absorption, fluorescence, and 19F-nmr chemical-shift and relaxation methods. Optical absorption and fluorescence experiments indicate that fluoroquine binds to nucleic acids in a similar manner to that of its well-known analog chloroquine. At low drug-to-base pair ratios, binding of both drugs appears to be random. Fluoroquine and chloroquine also elevate the melting temperature (Tm) of DNA to a comparable extent. Binding of fluoroquine to DNA, tRNA, or poly(A) results in a downfield shift of about 1.5 ppm for the 19F-nmr resonance. The chemical shift of free fluoroquine depends on the isotopic composition of the solvent (D2O vs H2O). The solvent isotope shift is virtually eliminated by fluoroquine binding to any one of the nucleic acids. 19F-nmr relaxation experiments were carried out to measure the spin-lattice relaxation time (T1), 19F{1H} nuclear Overhauser effect (NOE), off-resonance intensity ratio (R), off-resonance rotating-frame spin-lattice relaxation time (T1ρoff), and linewidth for fluoroquine in the nucleic acid complexes. By accounting for intramolecular proton-fluorine dipolar and chemical-shift anisotropy contributions to the fluorine relaxation, all of the relaxation parameters for the fluoroquine-DNA complex can be well described by a motional model incorporating long-range DNA bending on the order of a microsecond and an internal motion of the drug on the order of a nanosecond. Selective NOE experiments indicate that the fluorine in the drug is near the ribose protons in the RNA complexes, but not in the DNA complex. Details of the binding evidently differ for the two types of nucleic acids. This study provides the foundation for an investigation of fluoroquine in intact cells.
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  • 97
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Empirical conformational energy calculations have been carried out for N-methyl derivatives of alanine and phenylalanine dipeptide models and N-methyl-substituted active analogs of three biologically active peptides, namely thyrotropin-releasing hormone (TRH), enkephalin (ENK), and luteinizing hormone-releasing hormone (LHRH). The isoenergetic contour maps and the local dipeptide minima obtained, when the peptide bond (ω) preceding the N-methylated residue is in the trans configuration show that (1) N-methylation constricts the conformational freedom of both the ith and (i + 1)th residues; (2), the lowest energy position for both residues occurs around φ = -135° ± 5° and ψ = 75° ± 5°, and (3) the αL conformational state is the second lowest energy state for the (i + 1)th residue, whereas for the ith residue the C5 (extended) conformation is second lowest in energy. When the peptide bond (ωi) is in the cis configuration the ith residue is energetically forbidden in the range φ = 0° to 180° and ψ = -180° to +180°. Conformations of low energy for ωi = 0° are found to be similar to those obtained for the trans peptide bond. In all the model systems (irrespective of cis or trans), the αR conformational state is energetically very high. Significant deviations from planarity are found for the peptide bond when the amide hydrogen is replaced by a methyl group. Two low-energy conformers are found for [(N-Me)His2]TRH. These conformers differ only in the φ and ψ values at the (N-Me)His2 residue. Among the different low-energy conformers found for each of the ENK analogs [D-Ala2,(N-Me)Phe4, Met5]ENK amide and [D-Ala2,(N-Me)Met5]ENK amide, one low-energy conformer was found to be common for both analogs with respect to the side-chain orientations. The stability of the low-energy structures is discussed in the light of the activity of other analogs. Two low-energy conformers were found for [(N-Me)Leu7]LHRH. These conformations differ in the types of bend around the positions 6 and 7 of LHRH. One bend type is eliminated when the active analog [D-Ala6,(M-Me)Leu7]LHRH is considered.
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  • 98
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Based on steric and electrostatic considerations, the prerequisites for binding to DNA via the intercalation mechanism are proposed. Steric contour energy curves are presented to demonstrate the region inaccessible to an intercalant. They are calculated with a 6-n (n = 14) potential. This method is a soft potential analog of an excluded-volume approach. Electrostatic contours on the steric surface illustrate the relatively positive and negative regions of the binding site. The principal intercalation sites, predicted to fit into B-DNA via a tetramer-duplex unit, and the unconstrained dimer-duplex units, obtained in crystal structures, are examined. These contours illustrate the requirements of size, conformation, and net atomic charges necessary for intercalation and optimum binding. Based on the limited space available for intercalation by the presence of the backbone and the maximum base-pair separation of 8.25 Å, an Essential Metabolite Exclusion Hypothesis is presented.
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  • 99
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    Biopolymers 20 (1981), S. 345-357 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: In carbonate buffer at pH 10.5, a transparent solution of poly(L-lysine HBr) was obtained up to fairly high concentration of 3 g/dl at room temperature. The hydrodynamic behavior of the solution has been studied by sedimentation analyses and viscosity measurements. A dimer form for high concentrations and a monomer form for low concentrations were inferred. The dimer and monomer forms were assigned to a β-structure and α-helix, respectively, based on the CD and optical rotary dispersion spectra. Using CD spectroscopy, a reversible transition between α-helix and β-structure was observed as a function of either poly(L-lysine HBr) concentration or temperature. An aggregated form which was assigned to the antiparallel pleated sheet appeared at 50°C on the basis of its ir spectrum.
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  • 100
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    Biopolymers 20 (1981), S. 707-718 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Observations of induced circular dichroism (CD) bands in chloroform solution demonstrate the formation of specific, asymmetric complexes of the aromatic ligands 2-pyridone and 2,6-dichlorobenzoic acid with cyclic dipeptides of the general formula cyclo(L-Pro-X). The induced CD changes sign with the configuration of X due to subtle influences of the side chain on the geometry of the complex. Computations of interaction energies suggest that a plausible model for the complex of an aromatic ligand with the -CONH- of the cis secondary amide is a nearly planar arrangement of six heavy atoms in a ring containing two hydrogen bonds. The observed CD is matched by that computed for a tilt of the aromatic ligand toward the side chain of X. Binding constants were determined from the induced CD as a function of ligand concentration. For dichlorobenzoic acid these are about 450m-1 for the secondary amide and 50m-1 for the tertiary amide. For pyridone the binding constant is about 45m-1 for either the secondary or tertiary amide. For comparison self-dimerization constants determined by vapor-pressure osmometry in chloroform solution at 25°C are 870, 350, 50, and 20m-1 for pyridone, benzoic acid, dichlorobenzoic acid, and cyclo(L-Pro-Gly), respectively.
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