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  • Articles  (43)
  • phylogeny  (43)
  • Springer  (43)
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  • 2000-2004  (43)
  • 1930-1934
  • Biology  (43)
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  • Articles  (43)
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  • Springer  (43)
  • American Meteorological Society
  • American Physical Society (APS)
  • Springer Nature
  • Taylor & Francis
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  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Conservation genetics 1 (2000), S. 67-76 
    ISSN: 1572-9737
    Keywords: mitochondrial DNA ; phylogeny ; phylogeography ; speciation ; species concepts ; taxonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1573-0832
    Keywords: China ; epidemiology ; mitochodrial DNA ; phylogeny ; restriction fragment length polymorphism (RFLP) ; Sporothrix schenckii
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract Mitochondrial DNA (mtDNA) types based on restriction fragment length polymorphism (RFLP)patterns with HaeIII were investigated in clinical isolates of Sporothrix schenckii in China. In addition to 23 mtDNA types (Types 1–23) so far reported, a new mtDNA type (Type 24) was found in this study. Type 24 was divided into two subtypes, Subtype 24A and 24B based on RFLP with EcoRV. Sixty-seven isolates in China consisted of 58 isolates of Type 4, 5 of Type 6, 1 of Type 5, 1 of Type 20 and 2 of Type 24. Based on the phylogeny of the mtDNA types (Types 1–24) constructed by estimating sequence divergences of mtDNA, mtDNA types clustered into two groups: Group A (Types 1–3, Type 11, Types 14–19 and Types 22–23) and Group B (Types 4–10, Types 12–13,Types 20–21 and Type 24). These results suggest that mostS. schenckii isolates in China belong to Group B.
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Russian journal of marine biology 26 (2000), S. 432-438 
    ISSN: 1608-3377
    Keywords: Mutation ; phylogeny ; nuclear DNA ; mitochondrial DNA ; salmonid fishes ; divergence time
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Mutation rates of the mitochondrial and nuclear genomes of salmonid fishes were assessed on the basis of a phylogenetic study of 12 species representing four genera of the family Salmonidae. Analysis of the extent of divergence of the masu salmon Oncorhynchus masou and the Pacific trout Parasalmo suggests a high rate of mtDNA mutation in the masu salmon. However, the nuclear genome in this species has mutated relatively slowly. For the other 5 species of Pacific salmon, no discrepancy was found in the mutation rates of mitochondrial and nuclear DNA. Values of the absolute time of divergence of taxa, calculated for the two independently inherited parts of the salmonid genome, were approximately within the same range and coincided with those based on evolutionary hypotheses [1, 21].
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  • 4
    ISSN: 1615-6110
    Keywords: Brachypodium ; Poaceae ; ndhF ; ITS ; phylogeny
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A phylogenetic reconstruction of eight species of the genusBrachypodium P. Beauv. (Poaceae) has been obtained combining sequence data from the chloroplastndhF gene and the nuclear ITS, and using five representatives of tribes Triticeae (Secale), Poeae (Lolium), Meliceae (Melica, Glyceria) and Oryzeae (Oryza) as out-groups. Similar numbers of informative substitutions for the ingroup species were provided by both the 3′ region of the chloroplastndhF gene and the nuclear ITS region. The Mediterranean annualBrachypodium distachyon appears to be the basal lineage, followed by the divergence of the New World non-rhizomatousB. mexicanum, which antedates the separation of a core of six European and Eurosiberian rhizomatous perennials (Brachypodium arbuscula, B. retusum, B. rupestre, B. phoenicoides, B. pinnatum, andB. sylvaticum). The evolutionary reconstruction based on sequences of the chloroplast and the nuclear genomes is congruent with topologies obtained from analysis of RAPD data.
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  • 5
    ISSN: 1615-6110
    Keywords: Primulaceae ; Cyclamen ; phylogeny ; rDNA sequences ; ITS ; morphology
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A molecular phylogenetic study of the genusCyclamen L. (Primulaceae) has been undertaken, based on sequence data from the 5.8S gene in the ribosomal nuclear DNA and its flanking internal transcribed spacers ITS1 and ITS2. Sequence data from 15 species ofCyclamen and seven outgroup taxa selected from Primulaceae and Myrsinaceae were analyzed phylogenetically. A second analysis based on a combined morphological and molecular dataset was performed to evaluate earlier hypotheses of character evolution in the genus. The results indicate that four monophyletic subgroups may be recognized in the genus, viz.Cyclamen, Psilanthum Schwarz,Eucosme Schwarz andGyrophoebe Schwarz. Each of the four subgenera is diagnosed by distinct basic chromosome number, as well as by morphological and molecular characteristics.
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Plant systematics and evolution 220 (2000), S. 161-183 
    ISSN: 1615-6110
    Keywords: Pteridophyta ; Hypolepidaceae ; Dennstaedtiaceae ; Pteridium ; Histiopteris ; Hypolepis ; Dennstaedtia ; Construction morphology ; leaf development ; phase differentiation in leaf development ; soral development ; sorus ; receptacle ; indusium ; basipetal marginal sorus ; phylogeny
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In contrast to the generally favoured hypothesis that the marginal position of sporangia and sori is the primitive condition, Hagemann (e.g. 1984a) holds the view that the superficial position of reproductive organs is primitive. Marginal reproductive organs correlate with a distinct succession of a vegetative and a reproductive developmental phase in the sporophyll (“phase differentiation in leaf development”). Since phase differentiation means an increase in complexity, marginal reproductive organs are considered advanced. In order to examine the relations between submarginal and marginal sori in the light of Hagemann's hypothesis, various soral forms of ferns were analysed using the methodological framework of construction morphology sensu Weber (1958). The sorus is regarded as a reproductive region of the leaf surface that comprises not only the sporangia but also the receptacle as an essential component. The growth pattern of the receptacle, the developmental succession of the sporangia, and the formation of the indusia lead to the recognition of several sorus types. In the present paper the “basipetal marginal sorus” is presented and defined as the combination of (a) a ridge-, cushion-, or rod-shaped receptacle, (b) a basipetal sequence of sporangia initiation, and (c) the presence of a lower and an upper indusium or of a cup-shaped indusium. As the first examples of this type, the sori of selected Hypolepidaceae and Dennstaedtiaceae are treated in detail. Regarding the phylogenetic relationships of the present families, the following conclusions can be drawn: (1) Owing to the meristem fusion of the indusia the sorus ofDennstaedtia possesses a new quality as compared to that of the Hypolepidaceae. Therefore, the Hypolepidaceae and the Dennstaedtiaceae should not be combined in a single family, as suggested by some authors. (2) The marginal position of the sori, and, in addition, the highly complex soral construction of the Dennstaedtiaceae, are not in support of the primitiveness of the two families, as sometimes assumed. (3) A sorus construction as found inDennstaedtia glauca can be gradually derived from a less elaborate one, such as that found, e.g., inPteridium. The continuous increase in the perfection of the soral construction (Pteridium → Dennstaedtia) suggests a placement of the Dennstaedtiaceae after the Hypolepidaceae.
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  • 7
    ISSN: 1615-6110
    Keywords: Rutaceae ; Rutoideae ; Citroideae ; Dictyolomatoideae ; Spathelioideae ; Flindersioideae ; Flindersia ; Molecular systematics ; phylogeny ; chloroplast ; trnL-trnF spacer ; ITS-1
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract DNA sequencing has been used to construct two molecular phylogenies at the intrafamily and intrageneric level within the Rutaceae. Analysis oftrnL-trnF sequence data for five Rutaceae subfamilies has shown that there is no molecular support for the current subfamily classifications within the Rutaceae. The Dictyolomatoideae and Spathelioideae belong to a clade separate from the clades containing the remaining Rutaceae subfamilies. Rutoideae and Citroideae do not form discrete clades which suggests a reassessment of the subfamily classification is necessary, particularly asRuta falls within the majority Citroideae clade. Flindersioideae forms a clade within the Rutaceae and does not form a separate family or form a clade with Meliaceae. Sequencing of 17Flindersia species produces a similar phylogeny to that proposed by other authors using morphological methods with two exceptions. The molecular phylogeny indicatesF. amboinensis is associated withF. fournieri andF. laevicarpa and, in addition,F. oppositifolia andF. pimenteliana were found to be genetically identical.
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  • 8
    Electronic Resource
    Electronic Resource
    Springer
    Plant systematics and evolution 224 (2000), S. 153-171 
    ISSN: 1615-6110
    Keywords: Trifolium ; Fabaceae ; ITS ; phylogeny ; rpo intron ; restriction sites ; clover
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Phylogenies of Old WorldTrifolium species were constructed using nucleotide sequence data of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and chloroplast DNA restriction site data from PCR-amplified genes and genic regions (rbcL,trnK, andrpoC1–C2). Biogeography, morphological evolution, and the existing classification forTrifolium were examined. The genusTrifolium is strongly supported as monophyletic, however, only one small section (Chronosemium) is monophyletic, although the data are in conflict regarding its placement. The two largest sections of the genus, Sects.Lotoidea andTrifolium, are not supported as monophyletic, as currently circumscribed. Many members of Sect.Lotoidea are basal within the genus, supporting previously-proposed hypotheses concerning plesiomorphic morphological characters and a Mediterranean-Mideast biogeographic origin of the genus.
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  • 9
    ISSN: 1615-6110
    Keywords: Ranunculaceae ; Aconitum ; ITS ; polymorphism ; pseudogenes ; phylogeny
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Internal transcribed spacer (ITS) sequences of nuclear ribosomal DNA (nrDNA) were used to examine the phylogeny of East Asian aconites. Individual aconites were discovered to contain as many as eight different ITS sequences after cloning and PCR-SSCP (single-stranded conformational polymorphisms) analysis. We identified eight putative ITS pseudogenes from four taxa with low predicted secondary structure stability and high substitution rates. Maximum likelihood (ML) and neighbor-joining (NJ) methods were used for phylogenetic reconstruction. The ITS trees agree with the previous chloroplast DNA (cpDNA) tree for the vast majority of the taxa. We found two East Asian clades in the ITS trees: 1) a clade with the Chinese diploid,Aconitum volubile and East Asian tetraploids, and 2) a clade of East Asian diploids and Siberian tetraploids. In the former clade, most tetraploid taxa appear to be polyphyletic; sequences from individual plants did not correspond to recognized taxonomic units. This indicates a recent divergence of the East Asian tetraploids.
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Plant systematics and evolution 225 (2000), S. 133-140 
    ISSN: 1615-6110
    Keywords: Gentianales ; Apocynaceae ; Asclepiadoideae ; Blepharodon ; Funastrum ; Pentacyphus ; Philibertia ; Platykeleba ; Sarcostemma ; chloroplast DNA ; phylogeny ; trnT-trnL spacer ; trnL intron ; trnL-trnF spacer
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The polyphyly ofSarcostemma sensu latu, suspected on morphological and karyological reasons is confirmed by analysis of thetrnL-F spacer region. With the exception ofCynanchum montevidense (subgen.Mellichampia, Sundell 1981), Old World and New World taxa belong to different clades.Sarcostemma sensu stricto andPlatykeleba show a strong affinity to Old WorldCynanchum; the affinities ofOxystelma cannot be determined at present.Philibertia andBlepharodon are sister groups, both are sister toFunastrum, andPentacyphus is basal to the New World clade.
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