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  • Decision-support tools
  • Reverse transcriptase
  • Zooplankton
  • Oxford University Press  (3)
  • Mar del Plata: Instituto Nacional de Investigación y Desarrollo Pesquero  (2)
  • Hebei : SinoMaps Press
  • Krefeld : Geologischer Dienst Nordhein-Westfalen
  • 2005-2009  (5)
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  • 2005-2009  (5)
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  • 1
    Publication Date: 2022-05-25
    Description: © 2009 The Authors. This article is distributed under the terms of the Creative Commons Attribution Non-Commercial License. The definitive version was published in ICES Journal of Marine Science: Journal du Conseil 67 (2010): 379-394, doi:10.1093/icesjms/fsp242.
    Description: In principle, measurements of high-frequency acoustic scattering from oceanic microstructure and zooplankton across a broad range of frequencies can reduce the ambiguities typically associated with the interpretation of acoustic scattering at a single frequency or a limited number of discrete narrowband frequencies. With this motivation, a high-frequency broadband scattering system has been developed for investigating zooplankton and microstructure, involving custom modifications of a commercially available system, with almost complete acoustic coverage spanning the frequency range 150–600 kHz. This frequency range spans the Rayleigh-to-geometric scattering transition for some zooplankton, as well as the diffusive roll-off in the spectrum for scattering from turbulent temperature microstructure. The system has been used to measure scattering from zooplankton and microstructure in regions of non-linear internal waves. The broadband capabilities of the system provide a continuous frequency response of the scattering over a wide frequency band, and improved range resolution and signal-to-noise ratios through pulse-compression signal-processing techniques. System specifications and calibration procedures are outlined and the system performance is assessed. The results point to the utility of high-frequency broadband scattering techniques in the detection, classification, and under certain circumstances, quantification of zooplankton and microstructure.
    Description: The work was supported by the US Office of Naval Research (Grant # N000140210359).
    Keywords: Broadband acoustic scattering ; Internal waves ; Oceanic microstructure ; Zooplankton
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
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  • 2
    Publication Date: 2022-05-25
    Description: Author Posting. © Society of Systematic Biologists, 2006. This article is posted here by permission of Oxford University Press for personal use, not for redistribution. The definitive version was published in Systematic Biology 55 (2006): 875-885, doi:10.1080/10635150601077683.
    Description: Penelope-like elements (PLEs) are a relatively little studied class of eukaryotic retroelements, distinguished by the presence of the GIY-YIG endonuclease domain, the ability of some representatives to retain introns, and the similarity of PLE-encoded reverse transcriptases to telomerases. Although these retrotransposons are abundant in many animal genomes, the reverse transcriptase moiety can also be found in several protists, fungi, and plants, indicating its ancient origin. A comprehensive phylogenetic analysis of PLEs was conducted, based on extended sequence alignments and a considerably expanded data set. PLEs exhibit the pattern of evolution similar to that of non-LTR retrotransposons, which form deep-branching clades dating back to the Precambrian era. However, PLEs seem to have experienced a much higher degree of lineage losses than non-LTR retrotransposons. It is suggested that PLEs and non-LTR retrotransposons are included into a larger eTPRT (eukaryotic target-primed) group of retroelements, characterized by 5' truncation, variable target-site duplication, and the potential of the 3' end to participate in formation of non-autonomous derivatives.
    Description: This work was supported by the U.S. National Science Foundation (MCB 0614142).
    Keywords: Penelope-like elements ; Retrotransposons ; Reverse transcriptase ; GIY-YIG endonuclease
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 3
    Publication Date: 2022-05-26
    Description: This paper is not subject to U.S. copyright. The definitive version was published in ICES Journal of Marine Science: Journal du Conseil 67 (2010): 1-9, doi:10.1093/icesjms/fsp221.
    Description: Effective marine ecosystem-based management (EBM) requires understanding the key processes and relationships controlling the aspects of biodiversity, productivity, and resilience to perturbations. Unfortunately, the scales, complexity, and non-linear dynamics that characterize marine ecosystems often confound managing for these properties. Nevertheless, scientifically derived decision-support tools (DSTs) are needed to account for impacts resulting from a variety of simultaneous human activities. Three possible methodologies for revealing mechanisms necessary to develop DSTs for EBM are: (i) controlled experimentation, (ii) iterative programmes of observation and modelling ("learning by doing"), and (iii) comparative ecosystem analysis. We have seen that controlled experiments are limited in capturing the complexity necessary to develop models of marine ecosystem dynamics with sufficient realism at appropriate scales. Iterative programmes of observation, model building, and assessment are useful for specific ecosystem issues but rarely lead to generally transferable products. Comparative ecosystem analyses may be the most effective, building on the first two by inferring ecosystem processes based on comparisons and contrasts of ecosystem response to human-induced factors. We propose a hierarchical system of ecosystem comparisons to include within-ecosystem comparisons (utilizing temporal and spatial changes in relation to human activities), within-ecosystem-type comparisons (e.g. coral reefs, temperate continental shelves, upwelling areas), and cross-ecosystem-type comparisons (e.g. coral reefs vs. boreal, terrestrial vs. marine ecosystems). Such a hierarchical comparative approach should lead to better understanding of the processes controlling biodiversity, productivity, and the resilience of marine ecosystems. In turn, better understanding of these processes will lead to the development of increasingly general laws, hypotheses, functional forms, governing equations, and broad interpretations of ecosystem responses to human activities, ultimately improving DSTs in support of EBM.
    Keywords: Comparative marine ecosystem analysis ; Decision-support tools ; EAM ; EBM ; Ecological modelling ; Ecosystem approaches to management ; Ecosystem-based management
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 4
    Publication Date: 2021-05-19
    Description: In August 1996 acoustic methods were employed to estimate mackerel (Scomber japonicus) abundance in the Buenos Aires, Argentina shelf area of "El Rincón" (4,287 mn2), located between 39°- 40° 30' S. Results showed a biomass estimate of 77,260 t. ASIMRAD EK-500 equipment operated with a 38 KHz split-beam transducer was used. Midwater fishing trawls were employed to identify echotraces and to collect mackerel samples.Trawls 4 and 5 were the most successful. Samples included only adult fish (310-470 mm Lt and ages ranging 2-11). Length and weight growth parameters and mortality rates were estimated. Analysis of the stomach contents revealed that mackerel was feeding exclusively on zooplankters over 2 mmlength. The analysis of the characteristics (dimensions and density) of the mackerel shoals allowed to detect two areas of concentration above and below 40°S latitude. The northern area was characterized by relatively small schools of medium density similar to those of the Mar del Plata area. In the southern zone, large schools of high density that account for almost 92 of the total biomass were found.Differences between both areas were also detected when plankton distribution was analyzed. Higher abundances of the dinoflagellate Alexandrium tamarense corresponded to the southern area. On the contrary, higher zooplankton biomass was detected northerly of 40°S. From an oceanographic standpoint, the presence of mackerel was associated to relatively higher salinity values. As a result of the different data analyzed it is suggested that,during this time of the year, the species shows a migratory pattern from the intermediate shelf to coastal areas.
    Description: Publisher permission
    Description: Published
    Description: Scombridae, Scomber japonicus, caballa, zooplancton, relevamientos ecoicos, condiciones ambientales, biomasa, abundancia, estructura poblacional
    Keywords: Biomass ; Population structure ; Zooplankton ; Environmental conditions ; Abundance ; Biomass ; Population structure ; Zooplankton ; Environmental conditions ; Echo surveys
    Repository Name: AquaDocs
    Type: Journal Contribution
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  • 5
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    Mar del Plata: Instituto Nacional de Investigación y Desarrollo Pesquero
    Publication Date: 2021-05-19
    Description: Total and size-fractioned zooplankton biomass (larger and smaller than 5 mm) were analyzed over two cruises conducted in the late austral winter (September 1994 and 1995) in the area surrounding Malvinas Islands at the time that massive spawning of southern blue whiting was expected to take place. Biomass was rather uniformly distributed in the area and dominated by the fraction larger than 5 mm in which euphausiids and secondarily chaetognaths were dominating in terms of both weight and number. The smaller fraction was mostly made up of copepods. From the high occurrence of euphausiids and seasonal abundance of the several species of copepods normally present within the area it was hypothesised that the feeding requirements of juvenile and adult blue whiting as well as those of larvae and postlarvae may be met during the winter spawning season. The data were also examined in conjunction with the general pattern of zooplankton biomass occurring in autumn and spring in the Southern Patagonian shelf.
    Description: Sánchez, R.P.; ed. 1999. Reproductive habitat, biology and acoustic biomass estiomates of the southern blue whiting (Micromesistius australis) in the sea off southern patagonia. INIDEP Documento Científico, 5: 93 p.
    Description: Published
    Description: Gadiformes, Gadidae, Micromesistius australis, polaca, zooplancton, distribución por tamaño, estaciones de desove, biomasa, abundancia
    Keywords: Zooplankton ; Biomass ; Zooplankton ; Abundance ; Size distribution ; Biomass ; Spawning seasons
    Repository Name: AquaDocs
    Type: Journal Contribution
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