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  • FT-ICR-MS
  • Genetics
  • 2005-2009  (9)
  • 1985-1989  (493)
  • 1
    Publication Date: 2021-05-19
    Description: Aquaculture genetics research is carried out at the National Aquaculture Centre at Domasi, Malawi, by staff of the University of Malawi (UM) and the Department of Fisheries. The main species cultured are from genera Tilapia and Oreochromis. The genus Oreochromis was domesticated without proper identification of the various species especially in the subgenus Nyasalapia where three species (O. karongae, O. squamipinnis, and O. lidole) are difficult to identify before they reach breeding size. It is, however, observed that local fishers can identify these species using morphological characters. There have been no attempts to carry out deliberate domestication selection in the small-scale farms with the prevailing practices probably leading to deterioration of stock performance and decline in genetic diversity. Studies showed that wild populations grow faster than domesticated populations, and results of mass selection on collimated individuals suggest that selected individuals grow faster than unselected individuals. Studies of population genetics of domesticated and wild tilapias are underway at UM.
    Description: Published
    Keywords: Aquaculture ; Genetics
    Repository Name: AquaDocs
    Type: Book Section , Non-Refereed
    Format: 26231 bytes
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  • 2
    Publication Date: 2021-05-19
    Description: Cote d'Ivoire has a diverse ichthyological fauna. About 173 species of fish from 27 families and 67 genera are represented in the different rivers and lacustrine systems. Around 60 species are harvested by artisanal fishing. Less than 10 are used in aquaculture. Strategies need to be developed to preserve these diverse fish populations in both natural and artificial waterbodies. Cote d'Ivoire is watered by four main rivers. These are, from west to east, Cavally (600 km), Sassandra (650 km), Bandama (1050 km) and Comoe (1 100 km). A group of small coastal rivers composed of San Pedro (112 km), Boubo (130 km), Me (140 km), Agnebi (250 km) and Bia (290 km), among others, loca ted in the forest zone, are distributed throughout the southern region. Tributaries of river systems from neighboring countries flow partly on the Ivorian territory, including those of Niger, coming from Mali ( Bagoe, 230 km, and Baoule, 330 km); Black Volta, from Ghana (Koulda and Bineda); and Laleraba of Comoe system, a natural frontier with Burkina Faso. Over 400 dams have been constructed by the government of Cote d'Ivoire or by private investors in the last 30 years. Hydroelectric and hydroagricultural dams cover more than 180 542 km2, and agropastoral dams cover about I 562 km2.
    Description: Centre National de Recherche Agronomique
    Description: Published
    Keywords: Genetics ; Fish species ; Ichthyofauna
    Repository Name: AquaDocs
    Type: Proceedings Paper , Non-Refereed
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  • 3
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    ICLARM
    Publication Date: 2021-05-19
    Description: Fish production in Egypt has significantly increased over the last few years reaching 546 000 t in 1998 compared to 306 000 t in 1988. The contribution of aquaculture in the overall fish production has increased as well reaching its utmost share in 1998 (26%). Research on aquaculture topics was conducted in several institutes targeting the increase of productivity as well as working on problems facing this promising sector. However, research on fish genetics in Egypt only started in recent years. The genetic improvement of tilapias and African catfish represents the focus of most genetics research in Egypt. This paper presents the status of genetics research within the International Network on Genetics in Aquaculture and in other national institutes in Egypt.
    Description: Published
    Keywords: Genetics ; Genetics
    Repository Name: AquaDocs
    Type: Non-Refereed
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  • 4
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    ICLARM
    Publication Date: 2021-05-19
    Description: Fish genetics research conducted in two research centers and other institutions in Côte d’Ivoire is presented. Most of this research so far conducted focused on population genetics. In addition to electrophoresis characterization, morphometric and meristic characteristics were used to evaluate and describe fish population in Côte d’Ivoire. Recent genetic research tools, such as microsatellites, restriction fragment length polymorphism of mitochondrial DNA techniques have been used. Research activities dealt mainly with tilapias (Sarotherodon melanotheron, Oreochromis niloticus and O. aureus) and Siluriformes (Clarias gariepinus, C. anguillaris, Heterobranchus longifilis, H. bidorsalis and Chrysichthys nigrodigitatus) which were mostly used for their potential for aquaculture. One of the research centers, the Fish Station, attached to the Centre National de Recherche Agronomique-Bouaké regional office, is participating in the International Network on Genetics in Aquaculture Project.
    Description: Published
    Keywords: Genetics
    Repository Name: AquaDocs
    Type: Proceedings Paper , Non-Refereed
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  • 5
    Publication Date: 2021-05-19
    Description: Lake Kanyaboli (Kenya), a satellite lake of Lake Victoria, has been suggested as a potential refugium for haplochromine cichlids that have gone extinct in Lake Victoria. We employed mitochondrial DNA and microsatellite DNA molecular markers as well as feeding ecology studies to re- evaluate the evolutionary and ecological significance of Lake Kanyaboli haplochromines. The mitochondrial DNA and microsatellite markers revealed high genetic diversity in the endangered Xystichromis phytophagus and also the presence of mtDNA haplotypes that may have either gone extinct in Lake Victoria or have arisen in situ. Lake Kanyaboli thus acts as a ‘genetic reservoir’ for the Lake Victoria species flock. Gut content analysis revealed six trophic groups among the six haplochromine species. The haplochromine community in Lake Kanyaboli therefore exhibits trophic specializations. The relatively high trophic diversity in this cichlid community contrasts with the currently simplified trophic relationships of Lake Victoria. This high trophic diversity contributes to high energy flow and overall ecological efficiency of the lake. Lake Kanyaboli and similar satellite lakes therefore provide an opportunity for conservation of both genetic and trophic diversity threatened by introduction of exotics in the Lake Victoria basin. Lake Kanyaboli should thus be recognized as an important Evolutionary Signficant Unit (ESU) for Lake Victoria region haplochromine species. Basin wide molecular genetic characterization of the other tilapiine cichlid species as a basis of identifying genetically robust stocks that can be used in aquaculture or to restock Lake Victoria should be undertaken.
    Description: Published
    Description: Xystichromis phytophagus
    Keywords: Genetics ; Swamps ; Lakes ; Swamps ; Inland waters ; Water reservoirs ; Species extinction ; Resource conservation ; Resource management ; Tropical fish ; Genetics ; Swamps ; Lakes ; Resource conservation ; Environment management ; Rare resources ; Resource management ; Trophic relationships ; Genetic diversity ; Swamps ; Inland waters ; Water reservoirs ; Freshwater lakes ; Species extinction ; Ecological efficiency
    Repository Name: AquaDocs
    Type: Proceedings Paper
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  • 6
    Publication Date: 2021-01-30
    Description: Starting from a small base, aquaculture production in Africa registered annual growth rates equal to or above those in other regions. This expansion was due to signifi cant increases in a few African countries. Increasing demand coupled with rapidly dwindling catches from capture fi sheries, the implementation of novel participatory approaches to technology development and transfer, and the emergence of a few successful large-scale tilapia culture operations directed at the export market offer opportunities for further expansion in both the small-scale and large-scale commercial sectors. Existing biotechnical, economic and institutional challenges, which include lack of national policies to guide aquaculture development, unfriendly investment policies, the absence of linkages between farmers, research/technology development and extension, and unfavorable investment climates, are currently being addressed in a number of African countries. Long-term economic sustainability of African aquaculture will depend on the development and implementation of national policies that ensure the social and environmental sustainability of the industry.
    Description: Published
    Keywords: Genetically modified organisms ; Genetics ; Aquaculture ; Aquaculture engineering
    Repository Name: AquaDocs
    Type: Proceedings Paper , Non-Refereed
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  • 7
    Publication Date: 2022-05-26
    Description: © 2009 The Authors. This is an open-access article distributed under the terms of the Creative Commons Attribution Noncommercial License. The definitive version was published in Coral Reefs 28 (2009): 327-337, doi:10.1007/s00338-009-0466-z.
    Description: Design and decision-making for marine protected areas (MPAs) on coral reefs require prediction of MPA effects with population models. Modeling of MPAs has shown how the persistence of metapopulations in systems of MPAs depends on the size and spacing of MPAs, and levels of fishing outside the MPAs. However, the pattern of demographic connectivity produced by larval dispersal is a key uncertainty in those modeling studies. The information required to assess population persistence is a dispersal matrix containing the fraction of larvae traveling to each location from each location, not just the current number of larvae exchanged among locations. Recent metapopulation modeling research with hypothetical dispersal matrices has shown how the spatial scale of dispersal, degree of advection versus diffusion, total larval output, and temporal and spatial variability in dispersal influence population persistence. Recent empirical studies using population genetics, parentage analysis, and geochemical and artificial marks in calcified structures have improved the understanding of dispersal. However, many such studies report current self-recruitment (locally produced settlement/settlement from elsewhere), which is not as directly useful as local retention (locally produced settlement/total locally released), which is a component of the dispersal matrix. Modeling of biophysical circulation with larval particle tracking can provide the required elements of dispersal matrices and assess their sensitivity to flows and larval behavior, but it requires more assumptions than direct empirical methods. To make rapid progress in understanding the scales and patterns of connectivity, greater communication between empiricists and population modelers will be needed. Empiricists need to focus more on identifying the characteristics of the dispersal matrix, while population modelers need to track and assimilate evolving empirical results.
    Description: Work by CB Paris was supported by the National Science Foundation grant NSF-OCE 0550732. Work by M-A Coffroth and SR Thorrold was supported by the National Science Foundation grant NSF-OCE 0424688. Work by TL Shearer was supported by an International Cooperative Biodiversity Group grant R21 TW006662-01 from the Fogarty International Center at the National Institutes of Health.
    Keywords: Connectivity ; Larval dispersal ; Marine protected areas ; Resilience ; Replacement ; Genetics
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 8
    Electronic Resource
    Electronic Resource
    Springer
    Cellular and molecular life sciences 44 (1988), S. 491-495 
    ISSN: 1420-9071
    Keywords: Genetics ; stress ; emotionality ; locus ceruleus ; Maudsley strains
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Summary The Maudsley Reactive and Non-Reactive strains have been developed as a model for the study of individual variations in stress-reactivity, and many differences in biobehavioral systems have been found between them. This review discusses limitations of the ‘emotionality’ construct in accounting for differences between the Maudsley strains and offers an alternative, theoretical approach. Amaral and Sinnamon have proposed that the locus ceruleus (LC) plays a stress-attenuating role in mediating behavioral, physiological and neuroendocrine response to prepotent, emergency-provoking stimuli and, building upon this formulation, it is proposed that the LC has been an important focus for gene action in the Maudsley model. It is suggested that the LC of the Non-Reactive strain is more strongly activated by stressful stimuli than the LC of Reactive rats, and is the basis of many of the behavioral and physiological differences between them. Behavioral and biochemical evidence consistent with this proposition is reviewed. Identification of the LC as a target for gene-action in the Maudsley model has an important advantage. It substitutes variations at a specific anatomic location in the brain for a loosely defined construct like emotionality, and the hypothesis is amenable to empirical tests by a variety of experimental approaches.
    Type of Medium: Electronic Resource
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  • 9
    ISSN: 1432-1939
    Keywords: Logging disturbance ; Land gastropods ; Ecology ; Genetics ; Population
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Ecological and genetic properties of two North American terrestrial gastropods (Mesomphix spp.) were characterized in paired control and previously logged watersheds in two North Carolina forests (Coweeta and the Great Smoky Mountains National Park) of the Southern Appalachian Biosphere Reserve Cluster. Shell growth was greater in the control sites, but density and mortality were largely independent of prior logging history and forest reserve. Based on starch gel electrophoresis data, both species showed their highest levels of genetic diversity in the Coweeta forest, the component of the reserve cluster which had the most extensive and variable history of logging disturbance. M. subplanus also exhibited higher levels of heterozygosity in logged than in control watersheds, and M. andrewsae showed over twice as many rare alleles in disturbed sites as in control sites. F-statistic analysis depicted both excess levels of homozygosity and moderate genetic differentiation among the populations, reflecting the effects of small population size and perhaps drift and inbreeding. Estimated gene flow was relatively low. These results correspond to the recent finding by Bryant et al. (1987) and others on the effects of bottlenecks, and to the contrasting history of habitat instability of the two major study forests.
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Archives of microbiology 149 (1987), S. 36-42 
    ISSN: 1432-072X
    Keywords: Catabolite repression ; Genetics ; Malate dehydrogenase ; Molecular cloning ; Sequence ; CRP binding site ; Escherichia coli
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The malate dehydrogenase gene of Escherichia coli, which is susceptible to catabolite and anaerobic repression, has been cloned using plasmic pLC32-38 of Clarke and Carbon (1976). The nucleotide sequence was determined of a 2.47 kbp fragment, containing the mdh structural gene. All information necessary for expression of the mdh structural gene was mapped within a 1.3 kbp SphI-BstEII fragment. Compared with the untransformed wild type, transformations with pUC19 vector, containing this fragment, gave up to 40-fold more malate dehydrogenase activity in both E. coli wild type and mdh mutant recipients. Catabolite repression was not affected in the transformants. A possible CRP binding site in the promotor region of the mdh gene provides evidence for a co-regulation with fumA gene, the structural gene of fumarase, which is also subject to catabolite repression. The structures for transcription initiation and termination were similar to those previously described for E. coli. Amino acid sequence homologies between pro- and eucaryotic malate dehydrogenases are discussed.
    Type of Medium: Electronic Resource
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