ALBERT

Description: A multiproxy study of palaeoceanographic and climatic changes in northernmost Baffin Bay shows that major environmental changes have occurred since the deglaciation of the area at about 12 500 cal. yr BP. The interpretation is based on sedimentology, benthic and planktonic foraminifera and their isotopic composition, as well as diatom assemblages in the sedimentary records at two core sites, one located in the deeper central part of northernmost Baffin Bay and one in a separate trough closer to the Greenland coast. A revised chronology for the two records is established on the basis of 15 previously published AMS 14C age determinations. A basal diamicton is overlain by laminated, fossil-free sediments. Our data from the early part of the fossiliferous record (12 300–11 300 cal. yr BP), which is also initially laminated, indicate extensive seasonal sea-ice cover and brine release. There is indication of a cooling event between 11 300 and 10 900 cal. yr BP, and maximum Atlantic Water influence occurred between 10 900 and 8200 cal. yr BP (no sediment recovery between 8200 and 7300 cal. yr BP). A gradual, but fluctuating, increase in sea-ice cover is seen after 7300 cal. yr BP. Sea-ice diatoms were particularly abundant in the central part of northernmost Baffin Bay, presumably due to the inflow of Polar waters from the Arctic Ocean, and less sea ice occurred at the near-coastal site, which was under continuous influence of the West Greenland Current. Our data from the deep, central part show a fluctuating degree of upwelling after c. 7300 cal. yr BP, culminating between 4000 and 3050 cal. yr BP. There was a gradual increase in the influence of cold bottom waters from the Arctic Ocean after about 3050 cal. yr BP, when agglutinated foraminifera became abundant. A superimposed short-term change in the sea-surface proxies is correlated with the Little Ice Age cooling.

Description: The diet composition of Emperor Penguin Aptenodytes forsteri chicks was examined at Auster and Taylor Glacier colonies, near Australia's Mawson station, Antarctica, between hatching in mid-winter and fledging in mid-summer by “water-offloading” adults. Chicks at both colonies were fed a similar suite of prey species. Crustaceans occurred in 82% of stomach samples at Auster and 87% of stomachs at Taylor Glacier and were heavily digested: their contribution to food mass could not be quantified. Fish, primarily bentho-pelagic species, accounted for 52% by number and 55% by mass of chick diet at Auster, and squid formed the remainder. At Taylor Glacier the corresponding values were 27% by number and 31% by mass of fish and 73% by number and 69% by mass of squid. Of the 33 species or taxa identified, the fish Trematomus eulepidotus and the squid Psychroteuthis glacialis and Allu-roteuthis antarcticus accounted for 64% and 74% of the diets by mass at Auster and Taylor Glacier, respectively. The sizes of fish varied temporally but not in a linear manner from winter to summer. Adult penguins captured fish ranging in length from 60 mm (Pfeura-gramma antarcticum) to 250 mm (T. eulepidotus) and squid (P. glacialis) from 19 to 280 mm in mantle length. The length-frequency distribution of P. glacialis showed seasonal variation, with the size of squid increasing from winter to summer. The energy density of chick diet mix increased significantly prior to “fledging”.

Description: The Denmark Strait Overflow (DSO) today compensates for the northward flowing Norwegian and Irminger branches of the North Atlantic Current that drive the Nordic heat pump. During the Last Glacial Maximum (LGM), ice sheets constricted the Denmark Strait aperture in addition to ice eustatic/isostatic effects which reduced its depth (today ∼630 m) by ∼130 m. These factors, combined with a reduced north-south density gradient of the water-masses, are expected to have restricted or even reversed the LGM DSO intensity. To better constrain these boundary conditions, we present a first reconstruction of the glacial DSO, using four new and four published epibenthic and planktic stable-isotope records from sites to the north and south of the Denmark Strait. The spatial and temporal distribution of epibenthic δ18O and δ13C maxima reveals a north-south density gradient at intermediate water depths from σ0∼28.7 to 28.4/28.1 and suggests that dense and highly ventilated water was convected in the Nordic Seas during the LGM. However, extremely high epibenthic δ13C values on top of the Mid-Atlantic Ridge document a further convection cell of Glacial North Atlantic Intermediate Water to the south of Iceland, which, however, was marked by much lower density (σ0∼28.1) The north-south gradient of water density possibly implied that the glacial DSO was directed to the south like today and fed Glacial North Atlantic Deep Water that has underthrusted the Glacial North Atlantic Intermediate Water in the Irminger Basin.

Description: Cold-water coral ecosystems are considered hot-spots of biodiversity and biomass production and may be a regionally important contributor to carbonate production. The impact of these ecosystems on biogeochemical processes and carbonate preservation in associated sediments were studied at Røst Reef and Traenadjupet Reef, two modern (post-glacial) cold-water coral reefs on the Mid-Norwegian shelf. Sulfate and iron reduction as well as carbonate dissolution and precipitation were investigated by combining pore-water geochemical profiles, steady state modeling, as well as solid phase analyses and sulfate reduction rate measurements on gravity cores of up to 3.25 m length. Low extents of sulfate depletion and dissolved inorganic carbon (DIC) production, combined with sulfate reduction rates not exceeding 3 nmol S cm−3 d−1, suggested that overall anaerobic carbon mineralization in the sediments was low. These data showed that the coral fragment-bearing siliciclastic sediments were effectively decoupled from the productive pelagic ecosystem by the complex reef surface framework. Organic matter being mineralized by sulfate reduction was calculated to consist of 57% carbon bound in CH2O groups and 43% carbon in -CH2- groups. Methane concentrations were below 1 μM, and failed to support the hypothesis of a linkage between the distribution of cold-water coral reefs and the presence of hydrocarbon seepage. Reductive iron oxide dissolution linked to microbial sulfate reduction buffered the pore-water carbonate system and inhibited acid-driven coral skeleton dissolution. A large pool of reactive iron was available leading to the formation of iron sulfide minerals. Constant pore-water Ca2+, Mg2+ and Sr2+ concentrations in most cores and decreasing Ca2+ and Sr2+ concentrations with depth in core 23–18 GC indicated diagenetic carbonate precipitation. This was consistent with the excellent preservation of buried coral fragments.

Description: Many of the difficulties of staining plastic embedded tissues for light and electron microscopy derive from physical exclusion of hydrophilic staining reagents by hydrophobic embedding media. Structures which stain most intensely with hydrophilic reagents usually contain less hydrophobic plastic than do non-staining structures. Such incomplete infiltration is apparently caused by exclusion of viscous, hydrophobic monomers by physically dense and/or well hydrated tissue elements. In keeping with this, generalized staining of tissues embedded in hydrophobic media does occur when hydrophobic reagents are used. Staining of plastic-free structures with single hydrophilic reagents or with sequences of such reagents, is, however, largely rate-controlled. The surprising similarity of hydrophilic and hydrophobic plastic embedding media is discussed. Limits of this simple model are explored, with a consideration of the roles of fixative and of monomer-tissue reactions

Description: The late stage of the North East Atlantic (NEA) spring bloom was investigated during June 2005 along a transect section from 45 to 66° N between 15 and 20° W in order to characterize the contribution of siliceous and calcareous phytoplankton groups and describe their distribution in relation to environmental factors. We measured several biogeochemical parameters such as nutrients, surface trace metals, algal pigments, biogenic silica (BSi), particulate inorganic carbon (PIC) or calcium carbonate, particulate organic carbon, nitrogen and phosphorus (POC, PON and POP, respectively), as well as transparent exopolymer particles (TEP). Results were compared with other studies undertaken in this area since the JGOFS NABE program. Characteristics of the spring bloom generally agreed well with the accepted scenario for the development of the autotrophic community. The NEA seasonal diatom bloom was in the late stages when we sampled the area and diatoms were constrained to the northern part of our transect, over the Icelandic Basin (IB) and Icelandic Shelf (IS). Coccolithophores dominated the phytoplankton community, with a large distribution over the Rockall-Hatton Plateau (RHP) and IB. The Porcupine Abyssal Plain (PAP) region at the southern end of our transect was the region with the lowest biomass, as demonstrated by very low Chla concentrations and a community dominated by picophytoplankton. Early depletion of dissolved silicic acid (DSi) and increased stratification of the surface layer most likely triggered the end of the diatom bloom, leading to coccolithophore dominance. The chronic Si deficiency observed in the NEA could be linked to moderate Fe limitation, which increases the efficiency of the Si pump. TEP closely mirrored the distribution of both biogenic silica at depth and prymnesiophytes in the surface layer suggesting the sedimentation of the diatom bloom in the form of aggregates, but the relative contribution of diatoms and coccolithophores to carbon export in this area still needs to be resolved.

Description: Quantitation of nucleic acids is a fundamental tool in molecular biology that requires accuracy, reliability, and the use of increasingly smaller sample volumes. This unit describes the traditional absorbance measurement at 260 nm and three more sensitive fluorescence techniques, as well as three microvolume methods that use fiber optic technology in specialized cells or instrumentation. These procedures allow quantitation of DNA solutions ranging from 1 pg/µl to 50 mg/ml.

Description: Studies of laboratory cultures of Chordaria linearis (Hooker et Harvey) Cotton from southernmost South America revealed that this species has an obligate sexual life history in which a macroscopic sporophyte alternates with a monoecious microscopic gametophyte. Sexual reproduction is isogamous and under photoperiodic control. Gametes are produced only in short days, whereas in long days, asexual zoospores are formed that recycle the gametophyte generation. Unfused gametes develop into gametophytes, and sporophytes originate only from zygotes. Unlike other sexual members of the Chordariales, gametes of C. linearis have a reduced stigma and do not show phototaxis. They are released at the beginning of the night, not in the morning. In nature, C. linearis seems to be regularly infected by a dictyosiphonalean epiphyte resembling the rare arctic species Trachynema groenlandicum (Lund) Pedersen. The epiphyte is responsible for previous contradictory results obtained in laboratory cultures of C. linearis. This is the first record of Trachynema in the southern hemisphere.

Description: The constancy of postmoult/premoult ratios of measures of linear size during ontogeny in insect and other arthropods is widely known as Dyar's rule. We tested this rule in nine species of the waterstrider genera Gerris and Aquarius (Heteroptera: Gerridae), using two size variables: head width and a multivariate measure derived from the pattern of multivariate allometry common to the species considered. Allometric patterns were similar in two independent datasets of laboratory-reared and field-caught specimens. Although our data strictly followed Dyar's rule injust a few instances, all growth ratios varied within a limited range only. Growth ratios for head width differed more between moults than those for multivariate size. The relationship between growth ratios for the two size measures conformed to the predictions based on allometry. We discuss hypotheses of the possible adaptive significance of growth ratios, such as their relation to mobility and systematic differences between hemimetabolous and holometabolous insects, and emphasize the importance of allometry. Since Dyar's rule is consistent with available evidence of physiological mechanisms underlying growth and moulting control of insects and crustaceans, it can be used as a general frame of reference to test alternative growth models.

Description: In contrast to continuum systems where localization or shear banding arises through a bifurcation in a predefined system of differential equations, shear bands emerge in numerical simulations of deforming granular systems with no prescribed mathematical relations other than simple contact forces between particles. Shear bands emerge from the self‐organization of large numbers of particles with long‐range geometrical interactions playing a dominant role; both translation and rotation of particles are important. Granular media therefore deform more like materials with non‐local constitutive relations than materials where only first‐order interactions are relevant. In this paper we adopt a thermo‐mechanical approach and explore the fluxes of energy in the evolving granular system (that has cohesion as well as friction between the particles) as it is loaded through the unstable localization regime, and track the evolution of energy dissipation. As in continua, the sign of the second‐order work defines the emergence of instability in the system. Initially, these instabilities decay into stable configurations of particles but with continued loading, force chains collapse locally to generate geometrically necessary fractures. These zones then propagate to generate localization zones. When these fractures form a continuous network, the system is at the percolation thresh‐hold for broken bonds. However, long before this stage, the second‐order work fluctuates in bursts weakly correlated with bursts in kinetic energy as damage accumulates. This behaviour suggests that any continuum constitutive description of granular media must be (i) non‐local in an anisotropic manner, (ii) micro‐polar, and (iii) involve damage evolution.

Description: The ultimate cause of the onset of glaciations remains elusive, but in the case of northem hemisphere glaciation it is probable that several factors acted in combination. General global cooling resulted from reduction of atmospheric C02 by weathering of silicate rocks exposed by erosion of late Cenozoic uplifts. Uplifts in south Asia, southwestern North America and Scandinavia occurred at distances appropriate for the generation of quasi-permanent Rossby waves in the atmosphere. The resulting winds, given suitable moisture sources, were favourable for causing large-scale precipitation at mid-latitudes on the northern continents. Moisture sources were provided by the closure of the Central American isthmus. Gulf Stream flow increased, carrying warm subtropical waters to high latitudes. The Denmark Strait deepened permitting greater outflow of deep water from the Norwegian-Greenland Sea. The relative importance of each of these factors should be investigated by additional atmospheric and ocean climate model sensitivity studies.

Description: Although rising global sea levels will affect the shape of coastlines over the coming decades1, 2, the most severe and catastrophic shoreline changes occur as a consequence of local and regional-scale processes. Changes in sediment supply3 and deltaic subsidence4, 5, both natural or anthropogenic, and the occurrences of tropical cyclones4, 5 and tsunamis6 have been shown to be the leading controls on coastal erosion. Here, we use satellite images of South American mangrove-colonized mud banks collected over the past twenty years to reconstruct changes in the extent of the shoreline between the Amazon and Orinoco rivers. The observed timing of the redistribution of sediment and migration of the mud banks along the 1,500 km muddy coast suggests the dominant control of ocean forcing by the 18.6 year nodal tidal cycle7. Other factors affecting sea level such as global warming or El Niño and La Niña events show only secondary influences on the recorded changes. In the coming decade, the 18.6 year cycle will result in an increase of mean high water levels of 6 cm along the coast of French Guiana, which will lead to a 90 m shoreline retreat.

Description: King Penguins are the second largest of all diving birds and share with their congener, Emperor Penguins, breeding habits strikingly different from other penguins. Our purpose was to determine the feeding behavior, energetics of foraging and the prey species, and compare these to other sympatric species of subantarctic divers. We determined: (1) general features of foraging behavior using time—depth recorders, velocity meters, and radio transmitters, (2) energetics by doubly labeled water, (3) food habits and energy content from stomach lavage samples, and (4) resting and swimming metabolic rate by oxygen consumption measurements. The average foraging cycle was ≈6 d, during which the mass gain of 30 birds was ≈2 kg. When at sea, the birds exhibit a marked pattern of shallow dives during the night, whereas deep dives of 〉100 m only occurred during the day. Maximum depth measured from 34 birds and 18 537 dives was 304 m, and maximum dive duration from 23 birds and 11 874 dives was 7.7 min. The frequency distribution of dive depth was bimodal, with few dives between 40 and 100 m. Overall, swim velocities when a bird was at sea averaged 2.1 m/s (N = 5), while descent and ascent rates of change in depth averaged 0.6 m/s for dives 〈60 m (N = 74) and 1.4 m/s for dives 〉150 m (N = 90). Night feeding dives occurred at a rate of ≈20 dives/h, and deep dives occurred at a rate of ≈5 dives/h. The energy consumption rate while resting ashore was 3.3 W/kg (N = 3) or 1.6 times the predicted standard metabolic rate (SMR). The average energy consumption rate while away from the colony was 10 W/kg (N = 8) or 4.6 x SMR, compared to 4.3 x SMR estimated from a time—energy budget. The latter value is based on an average metabolic rate of 4.2 W/kg for three birds while resting in 5°C water and 9.6 W/kg while swimming at 2 m/s, which was extrapolated from the average of three birds swimming at 1 m/s. The average energy intake based on 9 stomach content samples was nearly 24.6 kJ/g dry mass. The main prey by number are myctophid fish of the species Krefftichthys anderssoni and Electrona carlsbergi. It was concluded that: (1) feeding begins ≈28 km from the colony, (2) prey is pursued night and day through its vertical movements, (3) vertical distribution of the prey is reflected closely by diving habits of the birds, (4) deep—diving, for unknown reasons, is an important component of foraging success, (5) diving capacities of King Penguins are remarkable compared to other birds and many pinnipeds, and (6) calculated foraging energetics can be closely estimated from time—energy budgets.

Description: Seafloor topography is neither spatially homogeneous, nor does it obey Gaussian statistics; deviations from both of these assumptions are important from a geological and acoustic point of view. It has been found that the distribution of topographic slopes can be used as a primary tool for understanding the sources and extent of spatial heterogeneities and patterns on the seafloor. The covariance function has been widely used to characterize seafloor topography, but requires the assumption of Gaussian joint probability statistics to be valid. For heterogeneous topography characterized by large transient signals such as steep scarps and volcanoes, the covariance becomes dominated by the transients; in contrast the family slope distributions can still be used to derive stable descriptors for regions with large transient signals, as well as regions containing asymmetric features, and regions with only limited sampling. Knowledge of slopes is useful because a direct relation exists between the covariance and the slope distributions at different spatial scales. Studies of the slope distribution provide a means of identifying the presence of the non‐Gaussian elements in the topography, and flagging their spatial locations. The methods used here are demonstrated by applying them to three small patches of topography located within 20 km of each other in the Eastern Pacific. It is found that dominant azimuthal directions and dip angles differ widely between the patches. In addition, asymmetries in the cross‐sectional shapes of faulted abyssal hills are documented. [Work supported by ONR.]

Description: Zircon is a common mineral in continental crustal rocks. As it is not easily altered in processes such as erosion or transport, this mineral is often used in the reconstruction of geological processes such as the formation and evolution of the continents. Zircon can also survive under conditions of the Earth’s mantle, and rare cases of zircons crystallizing in the mantle significantly before their entrainment into magma and eruption to the surface have been reported1,2,3. Here we analyse the isotopic and trace element compositions of large zircons of gem quality from the Eger rift, Bohemian massif, and find that they are derived from the mantle. (U–Th)/He analyses suggest that the zircons as well as their host basalts erupted between 29 and 24 million years ago, but fragments from the same xenocrysts reveal U–Pb ages between 51 and 83 million years. We note a lack of older volcanism and of fragments from the lower crust, which suggests that crustal residence time before eruption is negligible and that most rock fragments found in similar basalts from adjacent volcanic fields equilibrated under mantle conditions. We conclude that a specific chemical environment in this part of the Earth’s upper mantle allowed the zircons to remain intact for about 20–60 million years.

Description: Routine oxygen consumption of turbot, Scophthalmus maximus, was determined in relation to temperature, salinity, body wet weight, and time of day. The highest routine oxygen consumption rates measured roughly followed a arabolic curve over the temperature range tested (8 to 24°C). The lowest rates showed a more linear refationship over the same temperature range. It is argued that lowest rates correspond to the standard oxygen consumption. Between 16 and 19°C, routine oxygen consumption reached a maximum. It is suggested that these temperatures correspond to the preferred ternerature of the species and are within the range of optimum temperature for growth of specimens weigkng about 100 g. Salinity effect on oxygen consumption rates was studied in five groups acclimated over 4 weeks to 8, 15, 22, 29, and 35%. salinity. Routine oxygen consumption rates were lowest at 8% salinity with no significant differences in higher acclimation salinities. Routine respiration of turbots showed conspicuous daily fluctuations. During spring, summer, and autumn, oxygen Consumption was higher during morning hours and at night. In winter, higher rates were measured only once (during morning and early afternoon). The relationship between routine oxygen consumption and body weight of turbots followed an exponential function with a slope of 0.7, which was lower compared to the slope of 0.8 usually given for roundfish-species.

Description: Haplogloia andersonii (Farlow) Levring is an anti-tropical species that occurs on cold and warm-temperate Pacific coasts of both Americas. In its habit it resembles the subantarctic species Chordaria linearis (Hooker et Harvey) Cotton. Culture studies show that the species differ in morphology and ecophysiology of their microscopic gametophytes and in gamete behavior. Details of sporophyte anatomy are presented that also allow the distinction of field plants. In South America, H. andersonii occurs only on the Pacific coast, from central Perú (14°S) to southern Chile (50°S). Chordaria linearis occurs on the Pacific coast from Chiloé Island (43°S) to Cape Horn (56°S). In the shared area the species may co-occur. On the Atlantic coast, C. linearis was newly collected at a locality in northern Patagonia (41°S). In addition, C. linearis occurs in Antarctica. Haplogloia moniliformis Richer, recently described from Macquarie Island, is probably synonymous with Chordaria linearis.

Description: We examined the temperature tolerance of microscopic phases from geographically disjunct isolates of eight species or closely related, putatively conspecific taxa of temperate brown algae with disjunct distributions. Maximum within-taxon differences were small and ranged from 1.6° to 4.3° C. Desmarestia aculeata and Sphaerotrichia divaricata, both with northern hemisphere amphioceanic distributions, showed little or no significant intraspecific variation between the mean upper survival limits (USL) of Atlantic and Pacific strains (δUSL ≤ 1.4°C), which would agree with a relatively recent separation of the respective populations. Among the plants with bipolar distributions, there was likewise very little difference (δUSL 0–1.1°C) between northern and southern hemisphere strains in Striaria attenuata and in the species pair Desmarestia viridis/D. willii. In Desmarestia ligulata, and in the species pairs Desmarestia firma/D. munda, Dictyosiphon foeniculaceus/D. hirsutus, and Scytothamnus australis/Scytothamnus sp., significant differences occurred, which indicate longer divergence times. δUSL in these cases ranged from 1.7° to 2.7°C, without overlap between strains from the northern and southern hemispheres. All species that passed the equator during cooler epochs had a USL of 26–27°C, at least in some geographical isolates. The NE Asian kelp Undaria pinnatifida, which passed the equator in recent times, had a USL of 29.6°C. We hypothesize that the mechanism of spreading in the amphipolar species studied was migration of vegetative microthalli. The more unlikely alternative hypothesis of continuous populations through the tropics during a cooler epoch would imply a drop in seawater temperatures to approximately 20° C in summer and 15° C in winter, which is not supported by paleoclimatic evidence.

Description: Rapid chemical profiling of the antitumour active crude dichloromethane extract of the marine sponge, Dactylospongia sp. was undertaken. A combination of both offline (HPLC followed by NMR and MS) and on-line (on-flow and stop-flow HPLC-NMR) chemical profiling approaches was adopted to establish the exact nature of the major constituents present in the dichloromethane extract of this sponge. On-flow HPLC-NMR analysis was employed to initially identify components present in the dichloromethane extract, while stop-flow HPLC-NMR experiments were then conducted on the major component present, resulting in the partial identification of pentaprenylated p-quinol (5). Subsequent off-line RP semi-preparative HPLC isolation of 5 followed by detailed spectroscopic analysis using NMR and MS permitted the complete structure to be established. This included the first complete carbon NMR chemical shift assignment of 5 based on the heteronuclear 2-D NMR experiments, together with the first report of its antitumour activity. This study represents one of the few reports describing the application of HPLC-NMR to chemically profile secondary metabolites from a marine organism.

Description: This first quantitative study of the diet of Emperor penguins is based on 29 stomach contents collected with a water off-loading method in Adelie Land. The Emperor is largely ichthyophagous (65% by number and 95% by weight) and feeds extensively on small nototheniids (97% of the fish are 40–125 mm in overall length). These results and data on meal size and feeding frequency of the chick suggest that Emperors are off-shore foraging birds offering little competition for food with other sea-birds or mammals.

Description: The diet of King Penguins Aptenodytes patagonicus at Macquarie Island was studied between November 1984 and November 1985 based on stomach flushed samples (obtaining 93% of the total stomach content) from ten birds each month. The mean stomach content mass of the 118 samples was 923 0 g. Percentage by number, percentage by weight and dietary coefficient analysis all showed the main prey of the penguins to be myctophid lantern fish of the species Electrona carlsbergi and Krefftichthys anderssoni. Juvenile fish of both species were eaten from December to July, and adults in August and September. Cephalopods were relatively unimportant in contrast to previous indications. The amount of food brought ashore and the composition of the diet varied over the year, with K. anderssoni the dominant food in all but the winter months when E. carlsbergi replaced it as the principal food item.

Description: WHILE ammonites and all other ectocochleate cephalopods became extinct, nautiloids survived relatively unchanged from the Ordovician, suggesting that they are unusually well adapted to their niche. Here we obtain high-resolution tracks of Nautilus positions and depths, combined with telemetered jet pressures, which clarify both its lifestyle and economics. Nautilus is more active in nature than in captivity1, but its energy costs are lower than projected2,3. Viewing Nautilus as 'vertic', rather than benthic, resolves this contradiction. Records show that the cost of transport is the same in any direction within a vertical plane. Living on a reef face swept by a lateral current means that vertical movements4,5 sample large areas for chemical trails. A detected trail can be followed upcurrent in the slow-moving boundary layer, but no effort is wasted on horizontal movement without good prospects for food; long-range movements are downcurrent and made by drifting. Once fed, a Nautilus can reduce its energy costs by moving to deeper, cooler waters, where a single meal can last for months.

Description: In the past decade, a major trawl fishery for the squid Loligo gahi has developed in the vicinity of Beauchêne Island, an internationally important breeding site for the Black-browed Albatross Diomedea melanophris. The breeding season diet of this albatross in the Falklands and its use of discards generated by the Loligo fishery were investigated. Albatross chicks are fed extensively on commercially exploited species of squid and fish including Loligo gahi and southern blue whiting Micromesistius australis. The quantity of waste generated by the Loligo fishery amounts to c. 5% of the reported catch and just over 50% of this waste, mainly Loligo and nototheniid fish, is scavenged by adult Black-browed Albatrosses. The total quantity scavenged during the chick rearing period amounts to 1000–2000 tonnes per year. This is equivalent to 10–15% of the total food requirement of the breeding Black-browed Albatross population on Beauchene Island during the period when the fishery is operating. Although the Loligo fishery currently provides a significant quantity of food to these albatrosses, its net effect may be detrimental to them, as it is a much greater predator of Loligo stocks than the albatrosses are estimated to have been prior to the fishery's development.

Description: The genetic paradigm of cancer, focused largely on sequential molecular aberrations and associated biological impact in the neoplastic cell compartment of malignant tumors, has dominated our view of cancer pathogenesis. For the most part, this conceptualization has overlooked the dynamic and complex contributions of the surrounding microenvironment comprised of non-tumor cells (stroma) that may resist, react to, and/or foster tumor development. Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal disease in which a prominent tumor stroma compartment is a defining characteristic. Indeed, the bulk of PDAC tumor volume consists of non-neoplastic fibroblastic, vascular, and inflammatory cells surrounded by immense quantities of extracellular matrix, far exceeding that found in most other tumor types. Remarkably, little is known about the composition and physiology of the PDAC tumor microenvironment, in particular, the role of stroma in tumor initiation and progression. This review attempts to define key challenges, opportunities and state-of-knowledge relating to the PDAC microenvironment research with an emphasis on how inflammatory processes and key cancer pathways may shape the ontogeny of the tumor stroma. Such knowledge may be used to understand the evolution and biology of this lethal cancer and may convert these insights into new points of therapeutic intervention.

Description: Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) with a bismuth cluster primary ion source was used for analysing microbial lipid biomarkers in 10-µm-thick microscopic cryosections of methanotrophic microbial mats from the Black Sea. Without further sample preparation, archaeal isopranyl glycerol di- and tetraether core lipids, together with their intact diglycoside (gentiobiosyl-) derivatives, were simultaneously identified by exact mass determination. Utilizing the imaging capability of ToF-SIMS, the spatial distributions of these biomarkers were mapped at a lateral resolution of 〈 5 µm in 500 × 500 µm2 areas on the mat sections. Using inline image cluster projectiles in the burst alignment mode, it was possible to reach a lateral resolution of 1 µm on an area of 233 × 233 µm, thus approaching the typical size of microbial cells. The mappings showed different ‘provenances’ within the sections that are distinguished by individual lipid fingerprints, namely (A) the diethers archaeol and hydroxyarchaeol co-occurring with glycerol dialkyl glycerol tetraethers (GDGT), (B) hydroxyarchaeol and dihydroxyarchaeol, and (C) GDGT and gentiobiosyl-GDGT. Because ToF-SIMS is a virtually nondestructive technique affecting only the outermost layers of the sample surface (typically 10–100 nm), it was possible to further examine the studied areas using conventional microscopy, and associate the individual lipid patterns with specific morphological traits. This showed that provenance (B) was frequently associated with irregular, methane-derived CaCO3 crystallites, whereas provenance (C) revealed a population of fluorescent, filamentous microorganisms showing the morphology of known methanotrophic ANME-1 archaea. The direct coupling of imaging mass spectrometry with microscopic techniques reveals interesting perspectives for the in-situ study of lipids in geobiology, microbial ecology, and organic geochemistry. After further developing protocols for handling different kinds of environmental samples, ToF-SIMS could be used as a tool to attack many challenging problems in these fields, such as the attribution of biological source(s) to particular biomarkers in question, or the high-resolution tracking of biogeochemical processes in modern and ancient natural environments.

Description: A major role in regulation of global methane fluxes has been attributed to the process of anaerobic oxidation of methane (AOM), which is performed by consortia of methanotrophic archaea and sulfate reducing bacteria. An important question remains how these energy limited, slow growing Microorganisms with generation times of 3–7 months respond to rapid natural variations in methane fluxes at cold seeps. We used an experimental flow-through column system filled with cold seep sediments naturally enriched in methanotrophic communities, to test their responses to short-term variations in methane and sulfate fluxes. At stable methane and sulfate concentrations of ∼2 mM and 28 mM, respectively, we measured constant rates of AOM and sulfate reduction (SR) for up to 160 days of incubation. When percolated with methane-free medium, the anaerobic methanotrophs ceased to produce sulfide. After a starvation phase of 40 days, the addition of methane restored former AOM and SR rates immediately. At methane concentrations between 0–2.3 mM we measured a linear correlation between methane availability, AOM and SR. At constant fluid flow velocities of 30 m yr−1, ca. 50% of the methane was consumed by the anaerobic methanotrophic (ANME) population at all concentrations tested. Reducing the sulfate concentration from 28 to 1 mM, a decrease in AOM and SR by 50% was observed, and 45% of the methane was consumed. Hence, the marine anaerobic methanotrophs(ANME) are capable of oxidizing substantial amounts of methane over a wide and variable range of fluxes of the reaction educts.

Description: The achievable accuracy of bathymetric mapping in the deep ocean using robotic systems is most often limited by the available guidance or navigation information used to combine the measured sonar ranges during the map making process. This paper presents an algorithm designed to mitigate the affects of poor ground referenced navigation by applying the principles of map registration and pose filtering commonly used in simultaneous localization and mapping (SLAM) algorithms. The goal of the algorithm is to produce a self-consistent point cloud representation of the bottom terrain with errors that are on a scale similar to the sonar range resolution rather than any direct positioning measurement. The presented algorithm operates causally and utilizes sensor data that are common to instrumented underwater robotic vehicles used for mapping and scientific explorations. Real world results are shown for data taken on several expeditions with the JASON remotely operated vehicle (ROV). Comparisons are made between more standard mapping approaches and the proposed method is shown to significantly improve the map quality and reveal scene information that would have otherwise been obscured due to poor direct navigation information.

Description: Chemical investigation of the fungus Trichoderma sp., isolated from the Caribbean sponge Agelas dispar led to four novel sorbicillinoid polyketide derivatives (1–4) with an unprecedented tricyclic ring system. The structures of all compounds, including the absolute configuration, were determined by interpretation of their spectroscopic data (1D and 2D NMR, CD, MS, UV and IR), and molecular modeling calculations.

Description: Sections of the lateral line organ, primary and secondary blood vessels and skin from the Atlantic cod Gadus morhua, Linnaeus 1758, were examined by light and transmission electron microscopy (TEM). The lateral line organ showed a structural analogy to the semicircular canals of the mammalian inner ear. A pericanalicular sinus (PCS), a canal of very loose connective tissue, surrounded the lateral line canal (LLC), separated by a multilayered epithelial wall. Located dorsal and ventral to the lateral line organ secondary vessels of capillary dimensions were found in association with the PCS. TEM of the wall of these dorso-ventral vessels showed single tight junction contacts between the endothelial cells, allowing paracellular fluid exchange between the secondary vascular system and the PCS, an indication supported by horseradish peroxidase (HRP) tracer experiments, which showed reaction products in the PCS within 2 h after injecting HRP into the systemic circulation. The multilayered epithelial wall of the LLC showed multiple tight junctions between cells, making this boundary permeable only through transcellular transport.

Description: The survival of cod Gadus morhua, plaice Pleuronectes platessa, and dab Limanda limanda was determined in relation to ambient oxygen saturation at 8° C and 35% m salinity. Mortalit rates were observed in fish exposed to constant oxygen levels for 24h. First mortality occurred around 60 % oxygen saturation in cod and around 30% oxygen saturation in dab and plaice. Below these thresholds mortality increased linearly with decreasing oxygen levels. If cod were infested with 1 or 2 individuals of Lernaeocera branchialis (Copepoda), their tolerance was significantly lower; under such circumstances the incipient lethal oxygen saturation was 66 %.

Description: Scattered groups of these ancient fish may all stem from a single remote population. Coelacanths were discovered in the Comoros archipelago to the northwest of Madagascar in 1952. Since then, these rare, ancient fish have been found to the south off Mozambique, Madagascar and South Africa, and to the north off Kenya and Tanzania — but it was unclear whether these are separate populations or even subspecies. Here we show that the genetic variation between individuals from these different locations is unexpectedly low. Combined with earlier results from submersible and oceanographic observations1, 2, our findings indicate that a separate African metapopulation is unlikely to have existed and that locations distant from the Comoros were probably inhabited relatively recently by either dead-end drifters or founders that originated in the Comoros.

Description: High‐frequency bottom acoustic and geoacoustic data from three well‐characterized sites of different bottom composition are compared with scattering models in order to clarify the roles played by interface roughness and sediment volume inhomogeneities. Model fits to backscattering data from two silty sites lead to the conclusion that scattering from volume inhomogeneities was primarily responsible for the observed backscattering. In contrast, measured bottom roughness was sufficient to explain the backscattering seen at a sandy site. Although the sandy site had directional ripples, the model and data agree in their lack of anisotropy.

Description: Control of lacustrine phytoplankton biomass by phosphorus is one of the oldest and most stable paradigms in modern limnology. Even so, evidence from bioassays conducted by multiple investigators at numerous sites over the last three decades shows that N is at least as likely as P to be limiting to phytoplankton growth. A number of important flaws in the evidence supporting the phosphorus paradigm have contributed to an unrealistic degree of focus on phosphorus as a controlling element. These include insufficient skeptism in interpretation of: 1) the phosphorus: chlorophyll correlation in lakes, 2) the results of whole-lake fertilization experiments, and 3) stoichiometric arguments based on total N:total P ratios for inland waters. A new paradigm based on parity between N and P control of phytoplankton biomass in lakes seems more viable than the P paradigm. The new paradigm renews interest in the degree to which plankton communities are molded in composition by small differences in relative availability of N and P, the mechanisms that lead to a high frequency of N limitation in oligotrophic lakes, and the failure of aquatic N-fixers to compensate significantly for N deficiency under most conditions. A new N/P paradigm still must acknowledge that suppression of P loading often will be the most effective means of reducing phytoplankton biomass in eutrophic lakes, even if N is initially limiting.

Description: The responses of sea ice microalgae to variation in ambient irradiance (0 to 150 μE · m−2· s−1), temperature (–6° to + 6° C), and salinity (0 to 100 ppt) were tested to determine whether these variables act independently or in concert to influence rates of microalgal photosynthesis. The photosynthetic efficiency and maximum photosynthetic rate for sea ice microalgae increased as a function of incubation temperature between -6° and + 6° C. Furthermore, photosynthetic efficiency, maximum photosynthetic rate, and quantum yield were greatest at salinities between SO and 50 ppt. In contrast, the mean specific absorption coefficients were lowest near seawater salinities, and the saturating irradiance, Is, appeared to be inversely proportional to salinity. Results also suggest that the effects of salinity on the growth of sea ice microalgae are independent of those elicited by temperature or light, and that the functional relationship between salinity and light or temperature is multiplicative. This information is essential to the proper formulation of algorithms used to describe algal growth in environments where light, temperature, and salinity are changing simultaneously, such as within sea ice or within the water column at the marginal ice edge zone.

Description: Blennolides A–G (2–8), seven unusual chromanones, were isolated together with secalonic acid B (1) from Blennoria sp., an endophytic fungus from Carpobrotus edulis. This is the first reported isolation of the blennolides 2 and 3 (hemisecalonic acids B and E), the existence of which as the monomeric units of the dimeric secalonic acids had long been postulated. A compound of the proposed structure 4 (β-diversonolic ester) will need to be revised, as its reported data do not fit those of the established structure of blennolide C (4). Other monomers, the blennolides D–F (5–7) seem to be derived from blennolides A (2) and B (3) by rearrangement of the hydroaromatic ring. The heterodimer 8, composed of the monomeric blennolide A (2) and the rearranged 11-dehydroxy derivative of blennolide E (6), extends the ergochrome family with an ergoxanthin type of skeleton. The structures of the new compounds were elucidated by detailed spectroscopic analysis and further confirmed by an X-ray diffraction study of a single crystal of 2. The absolute configurations were determined by TDDFT calculations of CD spectra, including the solid-state CD/TDDFT approach. Preliminary studies showed strong antifungal and antibacterial activities of these compounds against Microbotryum violaceum and Bacillus megaterium, respectively. They were also active against the alga Chlorella fusca and the bacterium Escherichia coli.

Description: This study examined stocking with three early life stages of brown trout, Salmo trutta L., in the context of rehabilitating a native lineage. Experimental sections in five streams were stocked successively with three stages (I: unfed fry at the end of the reabsorption phase, II: fed fry measuring 2–3 cm and III: fed fry measuring 4–5 cm) derived from a hatchery stock bred from wild spawners. The three stages were distinguished by single or multiple fluoromarking of the otoliths with alizarin redS. The index of relative stocking efficiency was greater for stage II than for stage I in all sections and equivalent or greater than that for stage III. Stage II achieved significantly larger mean length and weight in autumn than stage III stockings.

Description: Sections PDFPDF Tools Share Abstract Many trophically transmitted parasites have complex life cycles: they pass through at least one intermediate host before reproducing in their final host. Despite their economic and theoretical importance, the evolution of such cycles has rarely been investigated. Here, combining a novel modeling approach with experimental data, we show for the first time that an optimal transfer time between hosts exists for a “model parasite,” the tapeworm Schistocephalus solidus , from its first (copepod) to its second (fish) intermediate host. When transferring between hosts around this time, (1) parasite performance in the second intermediate host, (2) reproductive success in the final host, and (3) fitness in the next generation is maximized. At that time, the infected copepod's behavior changes from predation suppression to predation enhancement. The optimal time for switching manipulation results from a trade‐off between increasing establishment probability in the next host and reducing mortality in the present host. Our results show that these manipulated behavioral changes are adaptive for S. solidus , rather than an artifact, as they maximize parasite fitness.

Description: Current measures of microbe‐mediated biogeochemical processes in sediments were examined for their potential use as indicators of heavy metal ecotoxicity in both river sediments and bacterial cultures. Assays were carried out with HgCl2, CuSO4, and 3CdSO4 · 8H2O added to sediment samples and bacterial cell suspensions at concentrations ranging from 0.1 to 10 mM and 0.1 μM to 1 mM, respectively. Chemoautotrophic CO2 fixation by Elbe River sediment microbiota was most sensitive to Hg2+ and Cd2+, but not to Cu2+. Among the estimates of heterotrophic productivity, incorporation of leucine into cellular protein showed clearer dose responses than incorporation of thymidine into bacterial DNA. Thymidine incorporation was highly resistant to and even stimulated by metal ions, particularly in starved and anaerobic cultures of a test strain of Vibrio anguillarum. Similar metal ion induced “overshoot” responses beyond the levels of untreated controls were noted for mineralization of 14C‐glucose by V. anguillarum and, in the case of Cd2+, also in sediment. As a less complex measure of microbial respiratory activity, succinate dehydrogenase (SDH) showed normal dose responses without stimulatory effects, as long as bacterial cell homogenates were assayed. Despite this result, it is concluded that levels of SDH in natural sediment microbiota are inevitably affected by metal‐induced processes of selection and enzyme synthesis, and would thus fail to provide an appropriate measure of metal ecotoxicity. The final conclusion is that current parameters of microbial production and activity often reveal dose responses that do not fulfill basic requirements of ecotoxicity testing in metal‐polluted sediments.

Description: Studies on the Mediterranean Undercurrent in the Gulf of Cádiz showed that bacterial abundance and biomass as well as heterotrophic activity were higher in the water of Mediterranean origin in 500–800 m depth than in the adjacent Atlantic water. Upwelling processes off Mauretania and Portugal were accompanied by high bacterial numbers (bacterial plate counts) in the mixed surface layer. Changes in the qualitative composition of the bacterial flora in the waters off West Africa and in the Arabian Gulf were explained by the introduction of dust from desert regions into the sea by aeolian transport. In the Western Baltic migration of fish was detected by the presence of special bacteria, which normally live on or in these animals. Regions with complex hydrographic structures such as the Western and Central Baltic Sea revealed interesting relationships between bacteriological abundance and activity on the one hand and characteristic physical and chemical properties, such as origin, salinity and O2/H2S‐content, on the other. The importance of bacteriological variables for the characterization of different water bodies is discussed.

Description: Large volcanic edifices are often shaped by the coalescence of adjacent volcanoes as well as intrusive rift zones and gravitational spreading. To better understand the structure of such volcanoes we designed analogue experiments simulating gravitational spreading of an edifice made by overlapping cones of different age, and examined the formation of rift zones. The results allow distinction of two main rift geometries. (i) Spreading edifices of similar age that partly overlap, tend to develop a rift zone approximately perpendicular to the boundary of both volcanoes. Such a rift zone causes two volcanoes to grow together and form an elongated topographic ridge. (ii) Partly overlapping volcanoes of different age are spreading at different rates and thus form a rift zone parallel to the boundary of both volcanoes. Such a rift zone causes two volcanoes to structurally separate. The results are widely applicable for large volcanoes subject to rifting and flank spreading, which we demonstrate for Réunion Island and for southern Hawaii.

Description: The relative importance of potential source and sink terms for bromoform (CHBr3) in the tropical Atlantic Ocean is investigated with a coupled physical-biogeochemical water column model. Bromoform production is either assumed to be linked to primary production or to phytoplankton losses; bromoform decay is treated as light dependent (photolysis), and in addition either vertically uniform, proportional to remineralisation or to nitrification. All experiments lead to the observed subsurface maximum of bromoform, corresponding to the subsurface phytoplankton biomass maximum. In the surface mixed layer, the concentration is set by entrainment from below, photolysis in the upper few meters and the outgassing to the atmosphere. The assumed bromoform production mechanism has only minor effects on the solution, but the various loss terms lead to significantly different bromoform concentrations below 200 m depth. The best agreement with observations is obtained when the bromoform decay is coupled to nitrification (parameterised by an inverse proportionality to the light field). Our model results reveal a pronounced seasonal cycle of bromoform outgassing, with a minimum in summer and a maximum in early winter, when the deepening surface mixed layer reaches down into the bromoform production layer

Description: Polymorphicgenesofthemajorhistocompatibilitycomplex(MHC)areregardedasessential genes for individual fitness under conditions of natural and sexual selection. To test this hypothesis, we investigated the ultimate individual fitness trait — that of reproductive success. We used three-spined sticklebacks (Gasterosteus aculeatus) in seminatural enclosures, located in natural breeding areas where the experimental fish had been caught. During their reproductive period, fish were exposed continuously to their natural sympatric parasites. By genotyping almost 4000 eggs with nine microsatellites, we determined parenthood and inferred female mating decision. We found that with reference to their own MHC profile, female sticklebacks preferred to mate with males sharing an intermediate MHC diversity. In addition, males with a specific MHC haplotype were bigger and better at fighting a common parasite (Gyrodactylus sp.). This translated directly into Darwinian fitness since fish harbouring this specific MHC haplotype were more likely to be chosen and had a higher reproductive output. We conclude that females also based their mating decision on a specific MHChaplotype conferring resistance against a common parasite. This identifies and supports ‘good genes’. We argue that such an interaction between host and parasite driving assortative mating is not only a prerequisite for negative frequency-dependent selection — a potential mechanism to explain the maintenance of MHC polymorphism, but also potentially speciation.

Description: As the complex interplay of forces in the ocean responds to climate change, the dynamics of global ocean circulation are shifting.

Description: There has been concern about recent temperature trends and the future effects of CO2 concentrations in the atmosphere1,2; but instrumental records only cover a few decades to a few centuries and it is essential that proxy data sources, such as pollen spectra from peats and lake sediments, be carefully interpreted as climate records. Several workers have shown statistically significant associations between the modern pollen rain and climatic parameters, an approach that by-passes the recognition of pollen/vegetation units. Statistically defined equations that associate abiotic and biotic elements are called transfer functions. We report here on the application of transfer function equations to nine middle and late Holocene peat and lake sediment sequences from northern Canada (Fig. 1).

Description: Before making a critical evaluation of the crude oil and natural gas prospects for the years to the end of the century, it is necessary to review the geology and structure of the three German hydrocarbon-producing provinces. Furthermore, past exploration, production and reserves should be discussed. The three hydrocarbon-producing provinces are: the NW German Basin, the Upper Rhine Graben and the Molasse Basin, which together make up about 41% of West German territory (Fig. 1). The NW German Basin contains a sedimentary sequence over 8,000 m thick ranging in age from Permian to Quaternary. Gas and oil, the two natural hydrocarbons, are generally confined to separate lower and higher stratigraphic levels respectively (Fig. 2). The NW German Basin is the most important prospective area in West Germany. It extends into the North Sea. The tectonic rift feature of the Upper Rhine Graben originated in the Eocene. The Tertiary fill is over 4,000 m thick. Oil is found mainly in Mesozoic, Eocene and Oligocene rocks; the Miocene and Pliocene reservoir rocks contain natural gas almost exclusively (Fig. 3). The Molasse Basin is part of the foredeep north of the Alpine and Carpathian mountain ranges. The basin is filled with Upper Eocene to Pliocene and Quaternary sediments which, near the Alpine nappes, reach a thickness of over 5,000m (Fig. 4). During this century there were peaks in annual oil-production in 1910, 1940 and 1968 (see Fig. 5). The 1910 peak was the result of drilling activity in the Wietze oilfield. During the period 1934–1945, government financial aid was made available for drilling exploration wells. The success of this collaboration is demonstrated by the oil output in 1940 of 1 × 106 t. After World War II, many different types of oil-bearing structure were found, particularly by reflection seismic techniques in conjunction with detailed stratigraphical and palaeogeographical investigations. The success achieved can be seen by the peak of 8 × 106 t oil production for 1968 (Fig. 5) and in the growth of oil reserves (Fig. 7). Intensive exploration also enabled many new gasfields to be developed, especially in the deeper horizons of the NW German Basin. In 1971, estimated gas reserves reached 360 × 109 m3 (Fig. 11), and annual gas production in 1979 was 20.7 × 109 m3 (731 Bcf) (Fig. 9). There is, no doubt, still scope for the discovery and exploitation of oil and gas in Germany, especially in the NW German Basin where the best prospects for the future lie. This is borne out by two recent offshore oil discoveries and also by the successful application of enhanced recovery methods in the oilfields. The chances of finding more gas at the lower stratigraphic levels are promising now that gas has been discovered in the deeper parts of the Permian basin. The results of massive-hydraulic-fracturing tests in low-permeability pay-horizons are also encouraging. The deeper parts of oil- and gas-producing basins contain interesting prospects and have yet to be tested by ultra-deep wells. Provided that the economic climate remains favourable, there should be no difficulty in finding and supplying German oil and gas in the future. Geologically and technically possible reserves should be converted into proven and/or probable reserves. German crude oil will be available for several years beyond the year 2000, and German natural gas for a far longer time. A production rate of 19 to 20 × 109 m3 of gas per annum is feasible over the next twenty years, and oil production will probably not sink below 3 × 106 t/a in this period.

Description: Organic detritus passing from the sea surface through the water column to the sea floor controls nutrient regeneration, fuels benthic life and affects burial of organic carbon in the sediment record. Particle trap systems have enabled the first quantification of this important process. The results suggest that the dominant mechanism of vertical transport is by rapid settling of rare large particles, most likely of faecal pellets or marine snow of the order of 〉200 μm in diameter, whereas the more frequent small particles have an insignificant role in vertical mass flux4–6. The ultimate source of organic detritus is biological production in surface waters of the oceans. I determine here an empirical relationship that predicts organic carbon flux at any depth in the oceans below the base of the euphotic zone as a function of the mean net primary production rate at the surface and depth-dependent consumption. Such a relationship aids in estimating rates of decay of organic matter in the water column, benthic and water column respiration of oxygen in the deep sea and burial of organic carbon in the sediment record.

Description: The biogeochemistry of the river-sea interface was studied in the Kem' River (the largest river flowing to the White Sea from Karelian coast) estuary and adjacent area of the White Sea onboard the RV "Ekolog" in summer 2001, 2002 and 2003. The study area can be divided into 3 zones: I - the estuary itself, with water depth from 1 to 5m and low salinity in the surface layer (salinity is lower than 0.2psu in the Kem' River and varies from 15 to 20psu in outer part of this zone); II - the intermediate zone with depths from 5 to 10m and salinity at the surface from 16 to 22psu; III - the marine zone with depths from 10 to 29 m and salinity 21-24.5psu. Highest concentrations of the suspended particulate matter (SPM) were registered in the Kem' mouth (5-7mg/l). They sharply decreased to values 〈1mg/l towards the sea. At beginning of July 2001, particulate organic carbon (POC) concentration in the river mouth was 404µg/l and POC content in total SPM was 5.64%. In the marine part of the studied area the POC concentration varied from 132 to 274µg/l and the POC contents in suspended matter increased to 19-52.6%. These studies show, that the majority of riverborne suspended matter in the Kem' estuary deposits near the river mouth within the 20psu isohaline, where sedimentation of the suspended matter takes place. The role of fresh-water phytoplankton species decreases and the role of marine species increases from the river to sea and the percentage of green algae decreases and the role of diatoms increases. The organic carbon (Corg) to nitrogen (N) ratio (Corg/N) in both suspended matter and bottom sediments decreases from the river to the marine part of the mixing zone (from 8.5 to 6.1 in the suspended matter and from 14.6 to 7.5 in the bottom sediments), demonstrating that content of terrestrial-derived organic matter decreases and content of marine organic matter increases from the river mouth to the sea. The Kem' estuary exhibits a similar character of biogeochemial processes as in the large Arctic estuaries, but the scale of these processes (amount of river input of SPM, POC, area of estuaries) is different.

Description: The interaction between iron availability and the phytoplankton elemental composition was investigated during the in situ iron fertilization experiment EIFEX and in laboratory experiments with the Southern Ocean diatom species Fragilariopsis kerguelensis and Chaetoceros dichaeta. Contrary to other in situ iron fertilization experiments we observed an increase in the BSi:POC, BSi:PON, and BSi:POP ratios within the iron fertilized patch during EIFEX. This is possibly caused by a relatively stronger increase in diatom abundance compared to other phytoplankton groups and does not necessarily represent the amount of silicification of single diatom cells. In laboratory experiments with F. kerguelensis and C. dichaeta no changes in the POC:PON, PON:POP, and POC:POP ratios were found with changing iron availability in both species. BSi:POC, BSi:PON, and BSi:POP ratios were significantly lower in the high iron treatments compared to the controls. In F. kerguelensis this was caused by a decrease in cellular BSi concentrations and therefore possibly less silicification. In C. dichaeta no change in cellular BSi concentration was found. Here lower BSi:POC, BSi:PON, and BSi:POP ratios were caused by an increase in cellular C, N, and P under high iron conditions. These results indicate that iron limitation does not always increase silicification in diatoms and that changes in the BSi:POC, BSi:PON, and BSi:POP ratios under iron fertilization in the field are caused by a variety of different mechanisms. Our results therefore imply that simple cause-and-effect relationships are not always applicable for modeling of elemental ratios.

Description: The subtropical Indian Ocean along 32° S was for the first time simultaneously sampled in 2002 for inorganic carbon and transient tracers. The vertical distribution and inventory of anthropogenic carbon (CANT) from five different methods: four data-base methods (ΔC*, TrOCA, TTD and IPSL) and a simulation from the OCCAM model are compared and discussed along with the observed CFC-12 and CCl4 distributions. In the surface layer, where carbon-based methods are uncertain, TTD and OCCAM yield the same result (7±0.2 molC m−2), helping to specify the surface CANT inventory. Below the mixed-layer, the comparison suggests that CANT penetrates deeper and more uniformly into the Antarctic Intermediate Water layer limit than estimated from the much utilized ΔC* method. Significant CFC-12 and CCl4 values are detected in bottom waters, associated with Antarctic Bottom Water. In this layer, except for ΔC* and OCCAM, the other methods detect significant CANT values. Consequently, the lowest inventory is calculated using the ΔC* method (24±2 molC m−2) or OCCAM (24.4±2.8 molC m−2) while TrOCA, TTD, and IPSL lead to higher inventories (28.1±2.2, 28.9±2.3 and 30.8±2.5 molC m−2 respectively). Overall and despite the uncertainties each method is evaluated using its relationship with tracers and the knowledge about water masses in the subtropical Indian Ocean. Along 32° S our best estimate for the mean CANT specific inventory is 28±2 molC m−2. Comparison exercises for data-based CANT methods along with time-series or repeat sections analysis should help to identify strengths and caveats in the CANT methods and to better constrain model simulations.

Description: Several trench-outer rise settings in subduction zones worldwide are characterized by a high degree of alteration, fracturing and hydration. These processes are induced by bending-related faulting in the upper part of the oceanic plate prior to its subduction. Mapping of P- and S-wave velocity structures in this complex tectonic setting provides crucial information for understanding the evolution of the incoming oceanic lithosphere, and serves as a baseline for comparison with seismic measurements elsewhere. Active source seismic investigations at the outer rise off Southern Central Chile (∼43°S) were carried out in order to study the seismic structure of the oceanic Nazca Plate. Seismic wide-angle data were used to derive 2-D velocity models of two seismic profiles located seaward of the trench axis on 14.5 Ma old crust; P01a approximately parallel to the direction of spreading and P03 approximately parallel to the spreading ridge and trench axes. We determined P- and S-velocity models using 2-D traveltime tomography. We found that the Poisson's ratio in the upper crust (layer 2) ranges between ∼0.33 at the top of the crust to ∼0.28 at the layer 2/3 interface, while in the lowermost crust and uppermost mantle it reaches values of ∼0.26 and ∼0.29, respectively. These features can be explained by an oceanic crust significantly weathered, altered and fractured. Relative high Poisson's ratios in the uppermost mantle may be likely related to partially hydrated mantle and hence serpentinization. Thus, the seismic structure of the oceanic lithosphere at the Southern Central Chile outer rise exhibits notable differences from the classic ophiolite seismic model (‘normal’ oceanic crust). These differences are primarily attributed to fracturing and hydration of the entire ocean crust, which are direct consequences of strong bending-related faulting at the outer rise. On the other hand, the comparison of the uppermost mantle P-wave velocities at the crossing point between the perpendicular profiles (∼90 km oceanward from the trench axis) reveals a low degree of Pn anisotropy (〈2 per cent).

Description: A number of field-campaigns in the tropics have been conducted in recent years with two different LIDAR systems at Paramaribo (5.8° N, 55.2° W), Suriname. The lidars detect particles in the atmosphere with high vertical and temporal resolution and are capable of detecting extremely thin cloud layers which frequently occur in the tropical tropopause layer (TTL). Radiosonde as well as operational ECMWF analysis showed that equatorial Kelvin waves propagated in the TTL and greatly modulated its temperature structure. We found a clear correlation between the temperature anomalies introduced by these waves and the occurrence of thin cirrus in the TTL. In particular we found that extremely thin ice clouds form regularly where cold anomalies shift the tropopause to high altitudes. These findings suggest an influence of Kelvin wave activity on the dehydration in the TTL and thus on the global stratospheric water vapour concentration.

Description: The early life-history of Chinese rock carp Procypris rabaudi was investigated during a 56-day rearing period: 318 artificially propagated P. rabaudi larvae were reared throughout metamorphosis in a small-scale recirculation system (345 L water volume, 10 × 18 L rearing tanks, 150 L storage and filter compartment with bioballs, 20–30 larvae L−1) at the Institute of Hydrobiology, Wuhan, Hubei Province, China. The newly hatched larvae had an initial total length of 8.93 ± 0.35 mm SD (n = 10) at 3 days post-hatch and reached an average total length of 33.29 mm (±1.88 mm SD, n = 10) 56 days after hatching. Length increment averaged 0.45 mm day−1, resulting in a mean growth of 24.4 mm within the 56-day period. High mortality rates of up to 92% derived from an introduced fungus infection and subsequent treatment stress with malachite green. Our results indicate that Chinese rock carp can be raised successfully from artificially fertilized eggs. We therefore assume this species to be a candidate for commercial aquaculture.

Description: Anaerobic methane-oxidizing microbial communities in sediments at cold methane seeps are important factors in controlling methane emission to the ocean and atmosphere. Here, we investigated the distribution and carbon isotopic signature of specific biomarkers derived from anaerobic methanotrophic archaea (ANME groups) and sulphate-reducing bacteria (SRB) responsible for the anaerobic oxidation of methane (AOM) at different cold seep provinces of Hydrate Ridge, Cascadia margin. The special focus was on their relation to in situ cell abundances and methane turnover. In general, maxima in biomarker abundances and minima in carbon isotope signatures correlated with maxima in AOM and sulphate reduction as well as with consortium biomass. We found ANME-2a/DSS aggregates associated with high abundances of sn-2,3-di-O-isoprenoidal glycerol ethers (archaeol, sn-2-hydroxyarchaeol) and specific bacterial fatty acids (C16:1ω5c, cyC17:0ω5,6) as well as with high methane fluxes (Beggiatoa site). The low to medium flux site (Calyptogena field) was dominated by ANME-2c/DSS aggregates and contained less of both compound classes but more of AOM-related glycerol dialkyl glycerol tetraethers (GDGTs). ANME-1 archaea dominated deeper sediment horizons at the Calyptogena field where sn-1,2-di-O-alkyl glycerol ethers (DAGEs), archaeol, methyl-branched fatty acids (ai-C15:0, i-C16:0, ai-C17:0), and diagnostic GDGTs were prevailing. AOM-specific bacterial and archaeal biomarkers in these sediment strata generally revealed very similar δ13C-values of around −100. In ANME-2-dominated sediment sections, archaeal biomarkers were even more 13C-depleted (down to −120), whereas bacterial biomarkers were found to be likewise 13C-depleted as in ANME-1-dominated sediment layers (δ13C: −100). The zero flux site (Acharax field), containing only a few numbers of ANME-2/DSS aggregates, however, provided no specific biomarker pattern. Deeper sediment sections (below 20 cm sediment depth) from Beggiatoa covered areas which included solid layers of methane gas hydrates contained ANME-2/DSS typical biomarkers showing subsurface peaks combined with negative shifts in carbon isotopic compositions. The maxima were detected just above the hydrate layers, indicating that methane stored in the hydrates may be available for the microbial community. The observed variations in biomarker abundances and 13C-depletions are indicative of multiple environmental and physiological factors selecting for different AOM consortia (ANME-2a/DSS, ANME-2c/DSS, ANME-1) along horizontal and vertical gradients of cold seep settings.

Description: The new aromatic polyketides genoketide A1, genoketide A2 and prechrysophanol glucuronide are biosynthetic intermediates of the octaketide chrysophanol. They were isolated from the alkaliphilic strain Streptomyces sp. AK 671 together with the new metabolite chrysophanol glucuronide. The structures of the compounds were elucidated by mass spectrometry and NMR methods. Genoketide A2 exhibited a slight and prechrysophanol glucuronide a more pronounced inhibition of the proliferation of L5178y lymphoma cells.

Description: Transmission of top-down control from fish to phytoplankton via crustacean mesozooplankton is a cornerstone of limnetic plankton ecology. Such trophic cascades are less frequently reported from the marine pelagic. In this article a case is made for consideration of scale issues and for the distinction between full (affecting entire trophic levels) and partial (affecting only some functional groups) trophic cascades. Partial cascades are more widespread while the full cascades are either ephemeral or depend on the suppression of compensatory growth of the predation-resistant size-fractions of phytoplankton. This suppression can only be achieved if there is a persistent coexistence between zooplankton feeding on different parts of the phytoplankton size spectrum. This condition is fulfilled in plankton communities where microphageous cladocerans (mainly Daphnia) and microphageous copepods coexist (many lake communities) or where krill and copepods coexist (high latitude marine communities). It is not fulfilled in many temperate and low-latitude marine communities where copepods effectively suppress filter-feeding appendicularians. Thus, the observed difference in the frequency of marine and limnetic pelagic cascades is considered real. Are all trophic cascades wet?

Description: The relation between the Agulhas Current retroflection location and the magnitude of Agulhas leakage, the transport of water from the Indian to the Atlantic Ocean, is investigated in a high-resolution numerical ocean model. Sudden eastward retreats of the Agulhas Current retroflection loop are linearly related to the shedding of Agulhas rings, where larger retreats generate larger rings. Using numerical Lagrangian floats a 37 year time series of the magnitude of Agulhas leakage in the model is constructed. The time series exhibits large amounts of variability, both on weekly and annual time scales. A linear relation is found between the magnitude of Agulhas leakage and the location of the Agulhas Current retroflection, both binned to three month averages. In the relation, a more westward location of the Agulhas Current retroflection corresponds to an increased transport from the Indian Ocean to the Atlantic Ocean. When this relation is used in a linear regression and applied to almost 20 years of altimetry data, it yields a best estimate of the mean magnitude of Agulhas leakage of 13.2 Sv. The early retroflection of 2000, when Agulhas leakage was probably halved, can be identified using the regression.

Description: Predicting the evolution of climate over decadal timescales requires a quantitative understanding of the dynamics that govern the meridional overturning circulation (MOC)1. Comprehensive ocean measurement programmes aiming to monitor MOC variations have been established in the subtropical North Atlantic2, 3 (RAPID, at latitude 26.5° N, and MOVE, at latitude 16° N) and show strong variability on intraseasonal to interannual timescales. Observational evidence of longer-term changes in MOC transport remains scarce, owing to infrequent sampling of transoceanic sections over past decades4, 5. Inferences based on long-term sea surface temperature records, however, supported by model simulations, suggest a variability with an amplitude of plusminus1.5–3 Sv (1 Sv = 106 m3 s-1) on decadal timescales in the subtropics6. Such variability has been attributed to variations of deep water formation in the sub-arctic Atlantic, particularly the renewal rate of Labrador Sea Water7. Here we present results from a model simulation that suggest an additional influence on decadal MOC variability having a Southern Hemisphere origin: dynamic signals originating in the Agulhas leakage region at the southern tip of Africa. These contribute a MOC signal in the tropical and subtropical North Atlantic that is of the same order of magnitude as the northern source. A complete rationalization of observed MOC changes therefore also requires consideration of signals arriving from the south.

Description: It is widely accepted that climate change constrains biota. Yet, because of the lack of consistent multisite and multitaxon surveys, few studies have addressed general rules about how climate change impacts on structure and diversity of animal communities. Especially, the relative influence of nonclimatic anthropogenic disturbances on this impact is fairly unknown. Here, we present for the first time a meta-analysis assessing the effect of global warming on stream organisms. Fish communities of large rivers in France undergoing various anthropogenic pressures showed significant increase in proportions of warm-water species and of specific richness during the last 15–25 years. Conversely, the equitability decreased, indicating a gradual decrease of the number of dominant species. Finally, the total abundance increased, coupled with rejuvenation and changes in size-structure of the communities. Interestingly, most of these effects were not depressed by the strength of nonclimatic anthropogenic disturbances. Conversely, geographical location of communities and especially closeness of natural barriers to migration could influence their response to climate change. Indeed, increase in the proportion of southern species seemed hindered at sites located close to the southern limit of the European species’ geographical ranges. This work provides new evidence that climate change have deep impacts on communities which, by overtaking the effects of nonclimatic anthropogenic disturbances, could be more substantial than previously thought. Overall, our results stress the importance of considering climate change impacts in studies addressing community dynamics, even in disturbed sites.

Description: The nitrogen cycling of Lake Cadagno was investigated by using a combination of biogeochemical and molecular ecological techniques. In the upper oxic freshwater zone inorganic nitrogen concentrations were low (up to ∼3.4 μM nitrate at the base of the oxic zone), while in the lower anoxic zone there were high concentrations of ammonium (up to 40 μM). Between these zones, a narrow zone was characterized by no measurable inorganic nitrogen, but high microbial biomass (up to 4 × 107 cells ml−1). Incubation experiments with 15N-nitrite revealed nitrogen loss occurring in the chemocline through denitrification (∼3 nM N h−1). At the same depth, incubations experiments with 15N2- and 13CDIC-labelled bicarbonate, indicated substantial N2 fixation (31.7–42.1 pM h−1) and inorganic carbon assimilation (40–85 nM h−1). Catalysed reporter deposition fluorescence in situ hybridization (CARD-FISH) and sequencing of 16S rRNA genes showed that the microbial community at the chemocline was dominated by the phototrophic green sulfur bacterium Chlorobium clathratiforme. Phylogenetic analyses of the nifH genes expressed as mRNA revealed a high diversity of N2 fixers, with the highest expression levels right at the chemocline. The majority of N2 fixers were related to Chlorobium tepidum/C. phaeobacteroides. By using Halogen In Situ Hybridization-Secondary Ion Mass Spectroscopy (HISH-SIMS), we could for the first time directly link Chlorobium to N2 fixation in the environment. Moreover, our results show that N2 fixation could partly compensate for the N loss and that both processes occur at the same locale at the same time as suggested for the ancient Ocean.

Description: The marine aragonite cycle has been included in the global biogeochemical model PISCES to study the role of aragonite in shallow water CaCO3 dissolution. Aragonite production is parameterized as a function of mesozooplankton biomass and aragonite saturation state of ambient waters. Observation-based estimates of marine carbonate production and dissolution are well reproduced by the model and about 60% of the combined CaCO3 water column dissolution from aragonite and calcite is simulated above 2000 m. In contrast, a calcite-only version yields a much smaller fraction. This suggests that the aragonite cycle should be included in models for a realistic representation of CaCO3 dissolution and alkalinity. For the SRES A2 CO2 scenario, production rates of aragonite are projected to notably decrease after 2050. By the end of this century, global aragonite production is reduced by 29% and total CaCO3 production by 19% relative to pre-industrial. Geographically, the effect from increasing atmospheric CO2, and the subsequent reduction in saturation state, is largest in the subpolar and polar areas where the modeled aragonite production is projected to decrease by 65% until 2100.

Description: At convergent margins, the structure of the subducting oceanic plate is one of the key factors controlling the morphology of the upper plate. We use high-resolution seafloor mapping and multichannel seismic reflection data along the accretionary Sumatra trench system to investigate the morphotectonic response of the upper plate to the subduction of lower plate fabric. Upper plate segmentation is reflected in varying modes of mass transfer. The deformation front in the southern Enggano segment is characterized by neotectonic formation of a broad and shallow fold-and-thrust belt consistent with the resumption of frontal sediment accretion in the wake of oceanic relief subduction. Conversely, surface erosion increasingly shapes the morphology of the lower slope and accretionary prism towards the north where significant oceanic relief is subducted. Subduction of the Investigator Fracture Zone and the fossil Wharton spreading centre in the Siberut segment exemplifies this. Such features also correlate with an irregularly trending deformation front suggesting active frontal erosion of the upper plate. Lower plate fabric extensively modulates upper plate morphology and the large-scale morphotectonic segmentation of the Sumatra trench system is linked to the subduction of reactivated fracture zones and aseismic ridges of the Wharton Basin. In general, increasing intensity of mass-wasting processes, from south to north, correlates with the extent of oversteepening of the lower slope (lower slope angle of 3.8 degrees in the south compared with 7.6 degrees in the north), probably in response to alternating phases of frontal accretion and sediment underthrusting. Accretionary mechanics thus pose a second-order factor in shaping upper plate morphology near the trench.

Description: Fully coupled climate carbon cycle models are sophisticated tools that are used to predict future climate change and its impact on the land and ocean carbon cycles. These models should be able to adequately represent natural variability, requiring model validation by observations. The present study focuses on the ocean carbon cycle component, in particular the spatial and temporal variability in net primary productivity (PP) and export production (EP) of particulate organic carbon (POC). Results from three coupled climate carbon cycle models (IPSL, MPIM, NCAR) are compared with observation-based estimates derived from satellite measurements of ocean colour and results from inverse modelling (data assimilation). Satellite observations of ocean colour have shown that temporal variability of PP on the global scale is largely dominated by the permanently stratified, low-latitude ocean (Behrenfeld et al., 2006) with stronger stratification (higher sea surface temperature; SST) being associated with negative PP anomalies. Results from all three coupled models confirm the role of the low-latitude, permanently stratified ocean for anomalies in globally integrated PP, but only one model (IPSL) also reproduces the inverse relationship between stratification (SST) and PP. An adequate representation of iron and macronutrient co-limitation of phytoplankton growth in the tropical ocean has shown to be the crucial mechanism determining the capability of the models to reproduce observed interactions between climate and PP.

Description: The relationship between carbon dioxide and climate over millions of years has been a source of controversy. Fossilized liverwort leaves can help illuminate both temperature and atmospheric carbon dioxide levels from 200 to 60 million years ago.

Description: Despite similar physical properties, the Northern and Southern Atlantic subtropical gyres have different biogeochemical regimes. The Northern subtropical gyre, which is subject to iron deposition from Saharan dust1, is depleted in the nutrient phosphate, possibly as a result of iron-enhanced nitrogen fixation2. Although phosphate depleted, rates of carbon fixation in the euphotic zone of the North Atlantic subtropical gyre are comparable to those of the South Atlantic subtropical gyre3, which is not phosphate limited. Here we use the activity of the phosphorus-specific enzyme alkaline phosphatase to show potentially enhanced utilization of dissolved organic phosphorus occurring over much of the North Atlantic subtropical gyre. We find that during the boreal spring up to 30% of primary production in the North Atlantic gyre is supported by dissolved organic phosphorus. Our diagnostics and composite map of the surface distribution of dissolved organic phosphorus in the subtropical Atlantic Ocean reveal shorter residence times in the North Atlantic gyre than the South Atlantic gyre. We interpret the asymmetry of dissolved organic phosphorus cycling in the two gyres as a consequence of enhanced nitrogen fixation in the North Atlantic Ocean4, which forces the system towards phosphorus limitation. We suggest that dissolved organic phosphorus utilization may contribute to primary production in other phosphorus-limited ocean settings as well.

Description: A set of experiments utilizing different implementations of the global ORCA-LIM model with horizontal resolutions of 2°, 0.5° and 0.25° is used to investigate tropical and extra-tropical influences on equatorial Pacific SST variability at interannual to decadal time scales. The model experiments use a bulk forcing methodology building on the global forcing data set for 1958 to 2000 developed by Large and Yeager (2004) that is based on a blend of atmospheric reanalysis data and satellite products. Whereas representation of the mean structure and transports of the (sub-) tropical Pacific current fields is much improved with the enhanced horizontal resolution, there is only little difference in the simulation of the interannual variability in the equatorial regime between the 0.5° and 0.25° model versions, with both solutions capturing the observed SST variability in the Niño3-region. The question of remotely forced oceanic contributions to the equatorial variability, in particular, the role of low-frequency changes in the transports of the Subtropical Cells (STCs), is addressed by a sequence of perturbation experiments using different combinations of fluxes. The solutions show the near-surface temperature variability to be governed by wind-driven changes in the Equatorial Undercurrent. The relative contributions of equatorial and off-equatorial atmospheric forcing differ between interannual and longer, (multi-) decadal timescales: for the latter there is a significant impact of changes in the equatorward transport of subtropical thermocline water associated with the lower branches of the STCs, related to variations in the off-equatorial trade winds. A conspicuous feature of the STC variability is that the equatorward transports in the interior and along the western boundary partially compensate each other at both decadal and interannual time scales, with the strongest transport extrema occurring during El Niño episodes. The behaviour is rationalized in terms of a wobbling in the poleward extents of the tropical gyres, which is manifested also in a meridional shifting of the bifurcation latitudes of the North and South Equatorial Current systems.

Description: Piceamycin, a new macrolactam polyketide antibiotic, was detected by HPLC-diode array screening in extracts of Streptomyces sp. GB 4-2, which was isolated from the mycorrhizosphere of Norway spruce. The structure of piceamycin was determined by mass spectrometry and NMR experiments. It showed inhibitory activity against Gram-positive bacteria, selected human tumor cell lines and protein tyrosine phosphatase 1B. The Journal of Antibiotics (2009) 62, 513-518; doi:10.1038/ja.2009.64; published online 17 July 2009

Description: The distribution of egg masses of the freshwater snails Lymnaea stagnalis and Planorbarius corneus on the undersides of water lily leaves (e.g. Nuphar lutea) is related to the prevalence of the leaf-mining beetle Galerucella nymphaeae. When given the choice, Planorbarius significantly avoids leaves that were infested by the mining beetle. Conversely, Lymnaea did not discriminate against mined leaves. Intact Nuphar leaves block over 95% of incident ultraviolet radiation. Yet, ultraviolet transmission reaches almost 100% under beetle mining scars. These are several times wider than snail embryos. When exposed to natural sunlight, Lymnaea embryos proved to be resistant to ambient ultraviolet, while Planorbarius embryos were rapidly killed. Thus, one selective advantage of Planorbarius discrimination against mined leaves when depositing its eggs could be the avoidance of ultraviolet radiation passing through mining scars. Other mining-related modifications of the leaves, reduced area, decreased longevity, altered aufwuchs (i.e. biofilm and epibionts) are discussed but seem less relevant for the oviposition preference of Planorbarius. The discriminatory behaviour of this snail species was triggered by water-borne cues emitted by the damaged leaf, not by the eggs or larvae of the beetle. This study illustrates how environmental stress on a given species, ultraviolet radiation in this case, can be ecologically buffered (shading by Nuphar) or enhanced (reduction of Nuphar shading through beetle mining) by associated species. It highlights how the impact of a given stress depends on the identity of the target species as well as on the identity and role of other species in the community.

Description: The calcium isotopic composition of NIST SRM 915b and 1486 provided by the National Institute of Standards and Technology was analysed. The δ44/40Ca values of the two reference materials relative to NIST SRM 915a were: NIST SRM 915b =+0.72 ± 0.04‰ and NIST SRM 1486 =−1.01 ± 0.02‰. NIST SRM 1486 did not require any chemical separation prior to measurement. La composition isotopique du calcium de NIST SRM 915b et 1486, fournis par l'Institut National des Standards et de la Technologie (NIST), a été analysée. Les valeurs du δ44/40Ca obtenues sur ces deux matériaux de référence, relativement au NIST SRM 915a sont: NIST SRM 915b =+0.72 ± 0.04‰ et NIST SRM 1486 =−1.01 ± 0.02‰. Le NIST SRM 1486 n'a nécessité aucune séparation chimique avant analyse.

Description: The first three Canadian Arctic Atmospheric Chemistry Experiment (ACE) Validation Campaigns at Eureka (80° N, 86° W) were during two extremes of Arctic winter variability: Stratospheric sudden warmings (SSWs) in 2004 and 2006 were among the strongest, most prolonged on record; 2005 was a record cold winter. New satellite measurements from ACE-Fourier Transform Spectrometer (ACE-FTS), Sounding of the Atmosphere using Broadband Emission Radiometry, and Aura Microwave Limb Sounder (MLS), with meteorological analyses and Eureka lidar and radiosonde temperatures, are used to detail the meteorology in these winters, to demonstrate its influence on transport and chemistry, and to provide a context for interpretation of campaign observations. During the 2004 and 2006 SSWs, the vortex broke down throughout the stratosphere, reformed quickly in the upper stratosphere, and remained weak in the middle and lower stratosphere. The stratopause reformed at very high altitude, above where it could be accurately represented in the meteorological analyses. The 2004 and 2006 Eureka campaigns were during the recovery from the SSWs, with the redeveloping vortex over Eureka. 2005 was the coldest winter on record in the lower stratosphere, but with an early final warming in mid-March. The vortex was over Eureka at the start of the 2005 campaign, but moved away as it broke up. Disparate temperature profile structure and vortex evolution resulted in much lower (higher) temperatures in the upper (lower) stratosphere in 2004 and 2006 than in 2005. Satellite temperatures agree well with Eureka radiosondes, and with lidar data up to 50–60 km. Consistent with a strong, cold upper stratospheric vortex and enhanced radiative cooling after the SSWs, MLS and ACE-FTS trace gas measurements show strongly enhanced descent in the upper stratospheric vortex during the 2004 and 2006 Eureka campaigns compared to that in 2005.

Description: Otolith increment width and larval fish data (length and weight) were used to develop an individual-based model (IBM) to describe daily resolved growth rates of North Sea herring (Clupea harengus) larvae (Autumn Spawners) caught during International Herring Larvae Surveys in the ICES area IVa from 1990 to 1998. The model combines sagittal otolith readings (core and individual increment measurements), larval standard length and weight data, and solves an over-determined set of linear system equations for all parameters using the method of least square residuals. The model consists of a matrix, which describes the increment width formation of 119 larvae, a vector containing their length/weight measurements, and a vector describing residuals. The solution vector yields age-dependent maximum somatic growth rates of herring larvae up to an age of 41 days with sizes ranging from 10 to 25 mm. The observed environmental temperature in which larvae dwelled was relatively uniform. Therefore, measured increment width was individually used to determine daily growth from any single larva in relation to their potential maximum growth under optimal feeding conditions. The results are discussed with respect to the spatial and temporal variability of larval occurrence. Finally, an analysis of error estimation of the larval growth characteristics is presented.

Description: The accurate reconstruction of sea surface temperature (SST) history in climate-sensitive regions (e.g. tropical and polar oceans) became a challenging task in palaeoceanographic research. Biogenic shell carbonate SST proxies successfully developed for tropical regions often fail in cool water environments. Their major regional shortcomings and the cryptic diversity now found within the major high latitude proxy carrier Neogloboquadrina pachyderma (sin.) highlight an urgent need to explore complementary SST proxies for these cool-water regions. Here we incorporate the genetic component into a calibration study of a new SST proxy for the high latitudes. We found that the calcium isotopic composition (δ44/40Ca) of calcite from genotyped net catches and core-top samples of the planktonic foraminifera Neogloboquadrina pachyderma (sin.) is related to temperature and unaffected by genetic variations. The temperature sensitivity has been found to be 0.17 (±0.02)‰ per 1°C, highlighting its potential for downcore applications in open marine cool-water environments. Our results further indicate that in extreme polar environments, below a critical threshold temperature of 2.0 (±0.5)°C associated with salinities below 33.0 (±0.5)‰, a prominent shift in biomineralization affects the δ44/40Ca of genotyped and core-top N. pachyderma (sin.), becoming insensitive to temperature. These findings highlight the need of more systematic calibration studies on single planktonic foraminiferal species in order to unravel species-specific factors influencing the temperature sensitivity of Ca isotope fractionation and to validate the proxies' applicability.

Description: 10.1111/j.1439-0426.2009.01215.x

Description: The soxB gene encodes the SoxB component of the periplasmic thiosulfate-oxidizing Sox enzyme complex, which has been proposed to be widespread among the various phylogenetic groups of sulfur-oxidizing bacteria (SOB) that convert thiosulfate to sulfate with and without the formation of sulfur globules as intermediate. Indeed, the comprehensive genetic and genomic analyses presented in the present study identified the soxB gene in 121 phylogenetically and physiologically divergent SOB, including several species for which thiosulfate utilization has not been reported yet. In first support of the previously postulated general involvement of components of the Sox enzyme complex in the thiosulfate oxidation process of sulfur-storing SOB, the soxB gene was detected in all investigated photo- and chemotrophic species that form sulfur globules during thiosulfate oxidation (Chromatiaceae, Chlorobiaceae, Ectothiorhodospiraceae, Thiothrix, Beggiatoa, Thiobacillus, invertebrate symbionts and free-living relatives). The SoxB phylogeny reflected the major 16S rRNA gene-based phylogenetic lineages of the investigated SOB, although topological discrepancies indicated several events of lateral soxB gene transfer among the SOB, e.g. its independent acquisition by the anaerobic anoxygenic phototrophic lineages from different chemotrophic donor lineages. A putative scenario for the proteobacterial origin and evolution of the Sox enzyme system in SOB is presented considering the phylogenetic, genomic (sox gene cluster composition) and geochemical data.

Description: The `plate tectonic mirror image' to the region of the Cocos and Nazca plates, which are currently being subducted beneath Central America, is preserved in the Central Pacific around 120°W just south of the equator. Cruise SO-180 investigated this remote area during project CENTRAL and acquired new magnetic and bathymetric data. A plate tectonic model for the ‘mirror image’ is presented based on the newly acquired as well as reprocessed existing data. Discordant magnetic anomaly patterns and bathymetric structures indicate at least two major reorganization events (19.5 and 14.7 Myr), which can be detected both in the Cocos-Nazca spreading system and in the East Pacific Rise. Irregularities in the anomaly pattern and curvilinear structures on the sea floor of the survey area are interpreted in terms of a fossil overlapping spreading centre at the location where the Farallon break-up originated.

Description: Rates of dinitrogen (N2) fixation and primary production were measured during two 9 day transect cruises in the Baltic proper in June–July of 1998 and 1999. Assuming that the early phase of the bloom of cyanobacteria lasted a month, total rates of N2 fixation contributed 15 mmol N m−2 (1998) and 33 mmol N m−2 (1999) to new production (sensu Dugdale and Goering, 1967). This constitutes 12–26% more new N than other annual estimates (mid July–mid October) from the same region. The between-station variability observed in both total N2 fixation and primary productivity greatly emphasizes the need for multiple stations and seasonal sampling strategies in biogeochemical studies of the Baltic Sea. The majority of new N from N2 fixation was contributed by filamentous cyanobacteria. On average, cyanobacterial cells 〉20 µm were able to supply a major part of their N requirements for growth by N2 fixation in both 1998 (73%) and 1999 (81%). The between-station variability was high however, and ranged from 28–150% of N needed to meet the rate of C incorporation by primary production. The molar C:N rate incorporation ratio (C:NRATE) in filamentous cyanobacterial cells was variable (range 7–28) and the average almost twice as high as the Redfield ratio (6.6) in both years. Since the molar C:N mass ratio (C:NMASS) in filamentous cyanobacterial cells was generally lower than C:NRATE at a number of stations, we suggest that the diazotrophs incorporated excess C on a short term basis (carbohydrate ballasting and buoyancy regulation), released nitrogen or utilized other regenerated sources of N nutrients. Measured rates of total N2 fixation contributed only a minor fraction of 13% (range 4–24) in 1998 and 18% (range 2–45) in 1999 to the amount of N needed for the community primary production. An average of 9 and 15% of total N2 fixation was found in cells 〈5 µm. Since cells 〈5 µm did not show any detectable rates of N2 fixation, the 15N-enrichment could be attributed to regenerated incorporation of dissolved organic N (DON) and ammonium generated from larger diazotroph cyanobacteria. Therefore, N excretion from filamentous cyanobacteria may significantly contribute to the pool of regenerated nutrients used by the non-diazotroph community in summer. Higher average concentrations of regenerated N (ammonium) coincided with higher rates of N2 fixation found during the 1999 transect and a higher level of 15N-enrichment in cells 〈5 µm. A variable but significant fraction of total N2 fixation (1–10%) could be attributed to diazotrophy in cells between 5–20 µm.

Description: Water column data of carbon and carbon relevant hydrographic and hydrochemical parameters from 188 previously non-publicly available cruises in the Arctic, Atlantic, and Southern Ocean have been retrieved and merged into a new database: CARINA (CARbon IN the Atlantic). The data have been subject to rigorous quality control (QC) in order to ensure highest possible quality and consistency. The data for most of the parameters included were examined in order to quantify systematic biases in the reported values, i.e. secondary quality control. Significant biases have been corrected for in the data products, i.e. the three merged files with measured, calculated and interpolated values for each of the three CARINA regions; the Arctic Mediterranean Seas (AMS), the Atlantic (ATL) and the Southern Ocean (SO). With the adjustments the CARINA database is consistent both internally as well as with GLODAP (Key et al., 2004) and is suitable for accurate assessments of, for example, oceanic carbon inventories and uptake rates and for model validation. The Arctic Mediterranean Seas include the Arctic Ocean and the Nordic Seas, and the quality control was carried out separately in these two areas. This contribution provides an overview of the CARINA data from the Nordic Seas and summarises the findings of the QC of the salinity data. One cruise had salinity data that were of questionable quality, and these have been removed from the data product. An evaluation of the consistency of the quality controlled salinity data suggests that they are consistent to at least ±0.005.

Description: The prevalence of antigrazing defense induction and the cues triggering induction in marine macroalgae are generally not well understood. We examined the capacity of defense and the mechanisms of regulation in five common perennial macroalgal species from the Baltic Sea, Furcellaria lumbricalis (Huds.) J. V. Lamour., Delesseria sanguinea (Huds.) J. V. Lamour., Phyllophora pseudoceranoides (S. G. Gmel.) Newroth et A. R. A. Taylor, Fucus serratus L., and Fucus evanescens C. Agardh. Specifically, we investigated whether direct feeding and/or waterborne cues from feeding on neighboring conspecifics decreased the palatability of the tested algae. Direct feeding by the local isopod Idotea baltica triggered the induction of chemical defense in Fur. lumbricalis, D. sanguinea, P. pseudoceranoides, F. serratus, and F. evanescens. Conversely, we did not find any evidence for waterborne cues associated with feeding to trigger defense induction in neighboring conspecifics.

Description: Permafrost environments in the Arctic are characterized by extreme environmental conditions that demand a specific resistance from microorganisms to enable them to survive. In order to understand the carbon dynamics in the climate-sensitive Arctic permafrost environments, the activity and diversity of methanogenic communities were studied in three different permafrost soils of the Siberian Laptev Sea coast. The effect of temperature and the availability of methanogenic substrates on CH4 production was analysed. In addition, the diversity of methanogens was analysed by PCR with specific methanogenic primers and by denaturing gradient gel electrophoresis (DGGE) followed by sequencing of DGGE bands reamplified from the gel. Our results demonstrated methanogenesis with a distinct vertical profile in each investigated permafrost soil. The soils on Samoylov Island showed at least two optima of CH4 production activity, which indicated a shift in the methanogenic community from mesophilic to psychrotolerant methanogens with increasing soil depth. Furthermore, it was shown that CH4 production in permafrost soils is substrate-limited, although these soils are characterized by the accumulation of organic matter. Sequence analyses revealed a distinct diversity of methanogenic archaea affiliated to Methanomicrobiaceae, Methanosarcinaceae and Methanosaetaceae. However, a relationship between the activity and diversity of methanogens in permafrost soils could not be shown.

Description: CORONA images have been used for the mapping of periglacial features on the Bykovsky Peninsula and adjacent Khorogor Valley in northeast Siberia. Features, mapped and analysed within a geographical information system, include thermokarst depressions, thermo-erosional valleys, thermo-erosional cirques, thermokarst lakes, thermokarst lagoons and pingos. More than 50% of the area is strongly influenced by thermally-induced subsidence. Thermokarst in the area is probably less active today than in the early-middle Holocene.

Description: The methane oxidation potential of active layer profiles of permafrost soils from the Lena Delta, Siberia, was studied with regard to its respond to temperature, and abundance and distribution of type I and type II methanotrophs. Our results indicate vertical shifts within the optimal methane oxidation temperature and within the distribution of type I and type II methanotrophs. In the upper active layer, maximum methane oxidation potentials were detected at 21°C. Deep active layer zones that are constantly exposed to temperatures below 2°C showed a maximum potential to oxidize methane at 4°C. Our results indicate a dominance of psychrophilic methanotrophs close to the permafrost table. Type I methanotrophs dominated throughout the active layer profiles but their number strongly fluctuated with depth. In contrast, type II methanotrophs were constantly abundant through the whole active layer and displaced type I methanotrophs close to the permafrost table. No correlation between in situ temperatures and the distribution of type I and type II methanotrophs was found. However, the distribution of type I and type II methanotrophs correlated significantly with in situ methane concentrations. Beside vertical fluctuations, the abundance of methane oxidizers also fluctuated according to different geomorphic units. Similar methanotroph cell counts were detected in samples of a flood plain and a polygon rim, whereas cell counts in samples of a polygon centre were up to 100 times lower.

Description: Permafrost environments within the Siberian Arctic are natural sources of the climate relevant trace gas methane. In order to improve our understanding of the present and future carbon dynamics in high latitudes, we studied the methane concentration, the quantity and quality of organic matter, and the activity and biomass of the methanogenic community in permafrost deposits. For these investigations a permafrost core of Holocene age was drilled in the Lena Delta (72°22′N, 126°28′E). The organic carbon of the permafrost sediments varied between 0.6% and 4.9% and was characterized by an increasing humification index with permafrost depth. A high CH4 concentration was found in the upper 4 m of the deposits, which correlates well with the methanogenic activity and archaeal biomass (expressed as PLEL concentration). Even the incubation of core material at −3 and −6°C with and without substrates showed a significant CH4 production (range: 0.04–0.78 nmol CH4 h−1 g−1). The results indicated that the methane in Holocene permafrost deposits of the Lena Delta originated from modern methanogenesis by cold-adapted methanogenic archaea. Microbial generated methane in permafrost sediments is so far an underestimated factor for the future climate development.

Description: Advances in detector technology enable a new generation of infrared limb sounders to measure 2-D images of the atmosphere. A proposed limb cloud imager (LCI) mode will detect clouds with a spatial resolution unprecedented for limb sounding. For the inference of temperature and trace gas distributions, detector pixels of the LCI have to be combined into super-pixels which provide the required signal-to-noise and information content for the retrievals. This study examines the extent to which tropospheric coverage can be improved in comparison to limb sounding using a fixed field of view with the size of the super-pixels, as in conventional limb sounders. The study is based on cloud topographies derived from (a) IR brightness temperatures (BT) of geostationary weather satellites in conjunction with ECMWF temperature profiles and (b) ice and liquid water content data of the Consortium for Small-scale Modeling-Europe (COSMO-EU) of the German Weather Service. Limb cloud images are simulated by matching the cloud topography with the limb sounding line of sight (LOS). The analysis of the BT data shows that the reduction of the spatial sampling along the track has hardly any effect on the gain in information. The comparison between BT and COSMO-EU data identifies the strength of both data sets, which are the representation of the horizontal cloud extent for the BT data and the reproduction of the cloud amount for the COSMO-EU data. The results of the analysis of both data sets show the great advantage of the cloud imager. However, because both cloud data sets do not present the complete fine structure of the real cloud fields in the atmosphere it is assumed that the results tend to underestimate the increase in information. In conclusion, real measurements by such an instrument may result in an even higher benefit for tropospheric limb retrievals.