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  • Other Sources  (281)
  • Wiley  (263)
  • National Academy of Sciences
  • Periodicals Archive Online (PAO)
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  • 2005-2009  (184)
  • 2000-2004  (97)
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  • 1
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    Numerical and Analytical Methods for Scientists and Engineers Using Mathematica (2003)
    Wiley
    In:  Hoboken, NJ, 633 pp., Wiley, vol. 16B, no. 2, pp. 125-169, (ISBN 0-471-26610-8)
    Details
    Publication Date: 2003
    Keywords: Textbook of mathematics ; Data analysis / ~ processing ; Modelling ; software ; manual ; computer ; algebra ; symbolic ; mathematics
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    BIBLIOGRAPHY SEISMOLOGY
  • 2
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    Geographic Information System and Science (2005)
    Wiley
    In:  Chichester, 2nd ed., xvii + 517 pp., Wiley, vol. 5, no. 22, pp. 662-664, (ISBN 0-470-87000-1 (HB), ISBN 0-470-87001-X (PB))
    Details
    Publication Date: 2005
    Keywords: GIS ; Textbook of informatics ; Textbook of geography ; geography ; management ; policy
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    BIBLIOGRAPHY SEISMOLOGY
  • 3
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    Deglacial and Holocene conditions in northernmost Baffin Bay: sediments, foraminifera, diatoms and stable isotopes (2008)
    Collegium Boreas | Wiley
    In:  Boreas, 37 (3). pp. 346-376.
    Details
    Publication Date: 2020-06-23
    Description: A multiproxy study of palaeoceanographic and climatic changes in northernmost Baffin Bay shows that major environmental changes have occurred since the deglaciation of the area at about 12 500 cal. yr BP. The interpretation is based on sedimentology, benthic and planktonic foraminifera and their isotopic composition, as well as diatom assemblages in the sedimentary records at two core sites, one located in the deeper central part of northernmost Baffin Bay and one in a separate trough closer to the Greenland coast. A revised chronology for the two records is established on the basis of 15 previously published AMS 14C age determinations. A basal diamicton is overlain by laminated, fossil-free sediments. Our data from the early part of the fossiliferous record (12 300–11 300 cal. yr BP), which is also initially laminated, indicate extensive seasonal sea-ice cover and brine release. There is indication of a cooling event between 11 300 and 10 900 cal. yr BP, and maximum Atlantic Water influence occurred between 10 900 and 8200 cal. yr BP (no sediment recovery between 8200 and 7300 cal. yr BP). A gradual, but fluctuating, increase in sea-ice cover is seen after 7300 cal. yr BP. Sea-ice diatoms were particularly abundant in the central part of northernmost Baffin Bay, presumably due to the inflow of Polar waters from the Arctic Ocean, and less sea ice occurred at the near-coastal site, which was under continuous influence of the West Greenland Current. Our data from the deep, central part show a fluctuating degree of upwelling after c. 7300 cal. yr BP, culminating between 4000 and 3050 cal. yr BP. There was a gradual increase in the influence of cold bottom waters from the Arctic Ocean after about 3050 cal. yr BP, when agglutinated foraminifera became abundant. A superimposed short-term change in the sea-surface proxies is correlated with the Little Ice Age cooling.
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  • 4
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    Diet composition of Emperor Penguin chicks Aptenodytes forsten‘ at two Mawson Coast colonies, Antarctica (2008)
    Wiley
    In:  Ibis, 136 (1). pp. 19-31.
    Details
    Publication Date: 2017-05-02
    Description: The diet composition of Emperor Penguin Aptenodytes forsteri chicks was examined at Auster and Taylor Glacier colonies, near Australia's Mawson station, Antarctica, between hatching in mid-winter and fledging in mid-summer by “water-offloading” adults. Chicks at both colonies were fed a similar suite of prey species. Crustaceans occurred in 82% of stomach samples at Auster and 87% of stomachs at Taylor Glacier and were heavily digested: their contribution to food mass could not be quantified. Fish, primarily bentho-pelagic species, accounted for 52% by number and 55% by mass of chick diet at Auster, and squid formed the remainder. At Taylor Glacier the corresponding values were 27% by number and 31% by mass of fish and 73% by number and 69% by mass of squid. Of the 33 species or taxa identified, the fish Trematomus eulepidotus and the squid Psychroteuthis glacialis and Allu-roteuthis antarcticus accounted for 64% and 74% of the diets by mass at Auster and Taylor Glacier, respectively. The sizes of fish varied temporally but not in a linear manner from winter to summer. Adult penguins captured fish ranging in length from 60 mm (Pfeura-gramma antarcticum) to 250 mm (T. eulepidotus) and squid (P. glacialis) from 19 to 280 mm in mantle length. The length-frequency distribution of P. glacialis showed seasonal variation, with the size of squid increasing from winter to summer. The energy density of chick diet mix increased significantly prior to “fledging”.
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  • 5
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    Variability of the Denmark Strait Overflow during the Last Glacial Maximum (2008)
    Wiley
    In:  Boreas, 35 (1). pp. 50-60.
    Details
    Publication Date: 2017-06-07
    Description: The Denmark Strait Overflow (DSO) today compensates for the northward flowing Norwegian and Irminger branches of the North Atlantic Current that drive the Nordic heat pump. During the Last Glacial Maximum (LGM), ice sheets constricted the Denmark Strait aperture in addition to ice eustatic/isostatic effects which reduced its depth (today ∼630 m) by ∼130 m. These factors, combined with a reduced north-south density gradient of the water-masses, are expected to have restricted or even reversed the LGM DSO intensity. To better constrain these boundary conditions, we present a first reconstruction of the glacial DSO, using four new and four published epibenthic and planktic stable-isotope records from sites to the north and south of the Denmark Strait. The spatial and temporal distribution of epibenthic δ18O and δ13C maxima reveals a north-south density gradient at intermediate water depths from σ0∼28.7 to 28.4/28.1 and suggests that dense and highly ventilated water was convected in the Nordic Seas during the LGM. However, extremely high epibenthic δ13C values on top of the Mid-Atlantic Ridge document a further convection cell of Glacial North Atlantic Intermediate Water to the south of Iceland, which, however, was marked by much lower density (σ0∼28.1) The north-south gradient of water density possibly implied that the glacial DSO was directed to the south like today and fed Glacial North Atlantic Deep Water that has underthrusted the Glacial North Atlantic Intermediate Water in the Irminger Basin.
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  • 6
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    Habitat differentiation vs. isolation-by-distance: the genetic population structure of Elymus athericus in European salt marshes (2003)
    Wiley
    In:  Molecular Ecology, 12 (2). pp. 505-515.
    Details
    Publication Date: 2017-07-18
    Description: We investigated genetic differentiation among populations of the clonal grass Elymus athericus, a common salt-marsh species occurring along the Wadden Sea coast of Europe. While E. athericus traditionally occurs in the high salt marsh, it recently also invaded lower parts of the marsh. In one of the first analyses of the genetic population structure in salt-marsh species, we were interested in population differentiation through isolation-by-distance, and among strongly divergent habitats (low and high marsh) in this wind- and water-dispersed species. High and low marsh habitats were sampled at six sites throughout the Wadden Sea. Based on reciprocal transplantation experiments conducted earlier revealing lower survival of foreign genotypes we predicted reduced gene flow among habitats. Accordingly, an analysis with polymorphic cross-species microsatellite primers revealed significant genetic differentiation between high and low marsh habitats already on a very small scale (〈 100 m), while isolation-by-distance was present only on larger scales (60–443 km). In an analysis of molecular variance we found that 14% of the genetic variance could be explained by the differentiation between habitats, as compared to only 8.9% to geographical (isolation-by-distance) effects among six sites 2.5–443 km distant from each other. This suggests that markedly different selection regimes between these habitats, in particular intraspecific competition and herbivory, result in habitat adaptation and restricted gene flow over distances as small as 80 m. Hence, the genetic population structure of plant species can only be understood when considering geographical and selection-mediated restrictions to gene flow simultaneously.
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  • 7
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    Quantitation of DNA and RNA with Absorption and Fluorescence Spectroscopy (2007)
    Wiley
    In:  Current Protocols in Human Genetics, 53 (Suppl. 3D). A.3D.1-A.3D.21.
    Details
    Publication Date: 2018-01-16
    Description: Quantitation of nucleic acids is a fundamental tool in molecular biology that requires accuracy, reliability, and the use of increasingly smaller sample volumes. This unit describes the traditional absorbance measurement at 260 nm and three more sensitive fluorescence techniques, as well as three microvolume methods that use fiber optic technology in specialized cells or instrumentation. These procedures allow quantitation of DNA solutions ranging from 1 pg/µl to 50 mg/ml.
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  • 8
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    Shear band emergence in granular materials—a numerical study (2007)
    Wiley
    In:  International Journal for Numerical and Analytical Methods in Geomechanics, 31 (3). pp. 373-393.
    Details
    Publication Date: 2018-04-24
    Description: In contrast to continuum systems where localization or shear banding arises through a bifurcation in a predefined system of differential equations, shear bands emerge in numerical simulations of deforming granular systems with no prescribed mathematical relations other than simple contact forces between particles. Shear bands emerge from the self‐organization of large numbers of particles with long‐range geometrical interactions playing a dominant role; both translation and rotation of particles are important. Granular media therefore deform more like materials with non‐local constitutive relations than materials where only first‐order interactions are relevant. In this paper we adopt a thermo‐mechanical approach and explore the fluxes of energy in the evolving granular system (that has cohesion as well as friction between the particles) as it is loaded through the unstable localization regime, and track the evolution of energy dissipation. As in continua, the sign of the second‐order work defines the emergence of instability in the system. Initially, these instabilities decay into stable configurations of particles but with continued loading, force chains collapse locally to generate geometrically necessary fractures. These zones then propagate to generate localization zones. When these fractures form a continuous network, the system is at the percolation thresh‐hold for broken bonds. However, long before this stage, the second‐order work fluctuates in bursts weakly correlated with bursts in kinetic energy as damage accumulates. This behaviour suggests that any continuum constitutive description of granular media must be (i) non‐local in an anisotropic manner, (ii) micro‐polar, and (iii) involve damage evolution.
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  • 9
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    A new green-tide-forming alga, Ulva ohnoi Hiraoka et Shimada sp. nov. (Ulvales, Ulvophyceae) from Japan (2004)
    Wiley
    In:  Phycological Research, 52 (1). pp. 17-29.
    Details
    Publication Date: 2017-11-24
    Description: Ulva ohnoi Hiraoka et Shimada sp. nov. (Ulvales, Ulvophyceae) is described from southern and western Japan and is characterized by the following combination of features: (i) the large, fragile, easily torn thalli, which are 30–55 μm thick in the upper and middle regions and often have microscopic marginal teeth; (ii) the production of zoids in the upper marginal region; (iii) a regular alternation of dioecious gametophytes and a sporophyte; (iv) the production of free-floating thalli from torn-off attached thalli, which reproduce vegetatively by fragmentation and form green tides in summer to autumn; (v) disorderly arranged cells that are polygonal or quadrangular in the upper and middle regions; and (vi) the chloroplast covering the outer face of cell, with 1–3 pyrenoids. Ulva ohnoi differs from U. armohcana Dion et al., U. fasciata Delile, U. reticulata Forsskal, U. scandinavica Eliding and U. spiulosaOkamura et Segawa, which all possess microscopic marginal serrations, in thallus shape, cell shape or life history pattern. It is also distinguished from morphologically similar species by sequences of the nuclear encoded internal transcribed spacers and the 5.8S ribosomal RNA gene and the plastid encoded large subunit of ribulose-l,5-bisphosphate carboxylase/oxgenase gene. Furthermore, crossing tests demonstrate that there is a reproductive boundary between U. ohnoi and the most closely related species, U. fasciata and U. reticulata.
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  • 10
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    Application of HPLC-NMR for the Rapid Chemical Profiling of a Southern Australian Sponge,Dactylospongiasp. (2009)
    Wiley
    In:  Journal of Separation Science, 32 (4). pp. 542-548.
    Details
    Publication Date: 2017-01-24
    Description: Rapid chemical profiling of the antitumour active crude dichloromethane extract of the marine sponge, Dactylospongia sp. was undertaken. A combination of both offline (HPLC followed by NMR and MS) and on-line (on-flow and stop-flow HPLC-NMR) chemical profiling approaches was adopted to establish the exact nature of the major constituents present in the dichloromethane extract of this sponge. On-flow HPLC-NMR analysis was employed to initially identify components present in the dichloromethane extract, while stop-flow HPLC-NMR experiments were then conducted on the major component present, resulting in the partial identification of pentaprenylated p-quinol (5). Subsequent off-line RP semi-preparative HPLC isolation of 5 followed by detailed spectroscopic analysis using NMR and MS permitted the complete structure to be established. This included the first complete carbon NMR chemical shift assignment of 5 based on the heteronuclear 2-D NMR experiments, together with the first report of its antitumour activity. This study represents one of the few reports describing the application of HPLC-NMR to chemically profile secondary metabolites from a marine organism.
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  • 11
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    The diet of Emperor Penguins Aptenodytes forsteri in Adelie Land, Antarctica (2008)
    Wiley
    In:  Ibis, 128 (3). pp. 409-413.
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    Publication Date: 2017-04-24
    Description: This first quantitative study of the diet of Emperor penguins is based on 29 stomach contents collected with a water off-loading method in Adelie Land. The Emperor is largely ichthyophagous (65% by number and 95% by weight) and feeds extensively on small nototheniids (97% of the fish are 40–125 mm in overall length). These results and data on meal size and feeding frequency of the chick suggest that Emperors are off-shore foraging birds offering little competition for food with other sea-birds or mammals.
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  • 12
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    The diet of the King Penguin Aptenodytes patagonicus at Macquarie Island (2008)
    Wiley
    In:  Ibis, 130 (2). pp. 193-203.
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    Publication Date: 2017-05-04
    Description: The diet of King Penguins Aptenodytes patagonicus at Macquarie Island was studied between November 1984 and November 1985 based on stomach flushed samples (obtaining 93% of the total stomach content) from ten birds each month. The mean stomach content mass of the 118 samples was 923 0 g. Percentage by number, percentage by weight and dietary coefficient analysis all showed the main prey of the penguins to be myctophid lantern fish of the species Electrona carlsbergi and Krefftichthys anderssoni. Juvenile fish of both species were eaten from December to July, and adults in August and September. Cephalopods were relatively unimportant in contrast to previous indications. The amount of food brought ashore and the composition of the diet varied over the year, with K. anderssoni the dominant food in all but the winter months when E. carlsbergi replaced it as the principal food item.
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  • 13
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    Quantitative analysis of the use of discards from squid trawlers by Black-browed Albatrosses Diomedea melanophris in the vicinity of the Falkland Islands (2008)
    Wiley
    In:  Ibis, 134 (1). pp. 11-21.
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    Publication Date: 2017-05-04
    Description: In the past decade, a major trawl fishery for the squid Loligo gahi has developed in the vicinity of Beauchêne Island, an internationally important breeding site for the Black-browed Albatross Diomedea melanophris. The breeding season diet of this albatross in the Falklands and its use of discards generated by the Loligo fishery were investigated. Albatross chicks are fed extensively on commercially exploited species of squid and fish including Loligo gahi and southern blue whiting Micromesistius australis. The quantity of waste generated by the Loligo fishery amounts to c. 5% of the reported catch and just over 50% of this waste, mainly Loligo and nototheniid fish, is scavenged by adult Black-browed Albatrosses. The total quantity scavenged during the chick rearing period amounts to 1000–2000 tonnes per year. This is equivalent to 10–15% of the total food requirement of the breeding Black-browed Albatross population on Beauchene Island during the period when the fishery is operating. Although the Loligo fishery currently provides a significant quantity of food to these albatrosses, its net effect may be detrimental to them, as it is a much greater predator of Loligo stocks than the albatrosses are estimated to have been prior to the fishery's development.
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  • 14
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    Stromal biology of pancreatic cancer (2007)
    Wiley
    In:  Journal of Cellular Biochemistry, 101 (4). pp. 887-907.
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    Publication Date: 2017-05-18
    Description: The genetic paradigm of cancer, focused largely on sequential molecular aberrations and associated biological impact in the neoplastic cell compartment of malignant tumors, has dominated our view of cancer pathogenesis. For the most part, this conceptualization has overlooked the dynamic and complex contributions of the surrounding microenvironment comprised of non-tumor cells (stroma) that may resist, react to, and/or foster tumor development. Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal disease in which a prominent tumor stroma compartment is a defining characteristic. Indeed, the bulk of PDAC tumor volume consists of non-neoplastic fibroblastic, vascular, and inflammatory cells surrounded by immense quantities of extracellular matrix, far exceeding that found in most other tumor types. Remarkably, little is known about the composition and physiology of the PDAC tumor microenvironment, in particular, the role of stroma in tumor initiation and progression. This review attempts to define key challenges, opportunities and state-of-knowledge relating to the PDAC microenvironment research with an emphasis on how inflammatory processes and key cancer pathways may shape the ontogeny of the tumor stroma. Such knowledge may be used to understand the evolution and biology of this lethal cancer and may convert these insights into new points of therapeutic intervention.
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  • 15
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    Biomarkers at the microscopic range: ToF-SIMS molecular imaging of Archaea-derived lipids in a microbial mat (2007)
    Wiley
    In:  Geobiology, 5 (4). pp. 413-421.
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    Publication Date: 2017-06-27
    Description: Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) with a bismuth cluster primary ion source was used for analysing microbial lipid biomarkers in 10-µm-thick microscopic cryosections of methanotrophic microbial mats from the Black Sea. Without further sample preparation, archaeal isopranyl glycerol di- and tetraether core lipids, together with their intact diglycoside (gentiobiosyl-) derivatives, were simultaneously identified by exact mass determination. Utilizing the imaging capability of ToF-SIMS, the spatial distributions of these biomarkers were mapped at a lateral resolution of 〈 5 µm in 500 × 500 µm2 areas on the mat sections. Using inline image cluster projectiles in the burst alignment mode, it was possible to reach a lateral resolution of 1 µm on an area of 233 × 233 µm, thus approaching the typical size of microbial cells. The mappings showed different ‘provenances’ within the sections that are distinguished by individual lipid fingerprints, namely (A) the diethers archaeol and hydroxyarchaeol co-occurring with glycerol dialkyl glycerol tetraethers (GDGT), (B) hydroxyarchaeol and dihydroxyarchaeol, and (C) GDGT and gentiobiosyl-GDGT. Because ToF-SIMS is a virtually nondestructive technique affecting only the outermost layers of the sample surface (typically 10–100 nm), it was possible to further examine the studied areas using conventional microscopy, and associate the individual lipid patterns with specific morphological traits. This showed that provenance (B) was frequently associated with irregular, methane-derived CaCO3 crystallites, whereas provenance (C) revealed a population of fluorescent, filamentous microorganisms showing the morphology of known methanotrophic ANME-1 archaea. The direct coupling of imaging mass spectrometry with microscopic techniques reveals interesting perspectives for the in-situ study of lipids in geobiology, microbial ecology, and organic geochemistry. After further developing protocols for handling different kinds of environmental samples, ToF-SIMS could be used as a tool to attack many challenging problems in these fields, such as the attribution of biological source(s) to particular biomarkers in question, or the high-resolution tracking of biogeochemical processes in modern and ancient natural environments.
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  • 16
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    A Self-Consistent Bathymetric Mapping Algorithm (2007)
    Wiley
    In:  Journal of Field Robotics, 24 (1-2). pp. 23-50.
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    Publication Date: 2017-08-10
    Description: The achievable accuracy of bathymetric mapping in the deep ocean using robotic systems is most often limited by the available guidance or navigation information used to combine the measured sonar ranges during the map making process. This paper presents an algorithm designed to mitigate the affects of poor ground referenced navigation by applying the principles of map registration and pose filtering commonly used in simultaneous localization and mapping (SLAM) algorithms. The goal of the algorithm is to produce a self-consistent point cloud representation of the bottom terrain with errors that are on a scale similar to the sonar range resolution rather than any direct positioning measurement. The presented algorithm operates causally and utilizes sensor data that are common to instrumented underwater robotic vehicles used for mapping and scientific explorations. Real world results are shown for data taken on several expeditions with the JASON remotely operated vehicle (ROV). Comparisons are made between more standard mapping approaches and the proposed method is shown to significantly improve the map quality and reveal scene information that would have otherwise been obscured due to poor direct navigation information.
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  • 17
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    Novel Sorbicillin Derivatives with an Unprecedented Carbon Skeleton from the Sponge-Derived FungusTrichoderma Species (2007)
    Wiley
    In:  European Journal of Organic Chemistry, 2007 (14). pp. 2268-2275.
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    Publication Date: 2017-09-06
    Description: Chemical investigation of the fungus Trichoderma sp., isolated from the Caribbean sponge Agelas dispar led to four novel sorbicillinoid polyketide derivatives (1–4) with an unprecedented tricyclic ring system. The structures of all compounds, including the absolute configuration, were determined by interpretation of their spectroscopic data (1D and 2D NMR, CD, MS, UV and IR), and molecular modeling calculations.
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  • 18
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    Do commonly used indices of β-diversity measure species turnover? (2001)
    Wiley
    In:  Journal of Vegetation Science, 12 (4). pp. 545-552.
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    Publication Date: 2017-09-15
    Description: Indices of β-diversity are of two major types, (1) those that measure among-plot variability in species composition independently of the position of individual plots on spatial or environmental gradients, and (2) those that measure the extent of change in species composition along predefined gradients, i.e. species turnover. Failure to recognize this distinction can lead to the inappropriate use of some β-diversity indices to measure species turnover. Several commonly-used indices of β-diversity are based on Whittaker's βW (βW = γ/α, where γ is the number of species in an entire study area and α is the number of species per plot within the study area). It is demonstrated that these indices do not take into account the distribution of species on spatial or environmental gradients, and should therefore not be used to measure species turnover. The terms ‘β-diversity’ and ‘species turnover’ should not be used interchangeably. Species turnover can be measured using matrices of compositional similarity and physical or environmental distances among pairs of study plots. The use of indices of β-diversity and similarity-distance curves is demonstrated using simulated data sets.
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  • 19
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    The Inflow of Highly Saline Water into the Baltic Sea (2008)
    Wiley
    In:  In: State and Evolution of the Baltic Sea, 1952-2005: A Detailed 50-year Survey of Meteorology and Climate, Physics, Chemistry, Biology, and Marine Environment. , ed. by Feistel , R., Nausch , G. and Wasmund , N. Wiley, Hoboken, pp. 265-309.
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    Publication Date: 2017-11-24
    Type: Book chapter , NonPeerReviewed
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  • 20
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    Vascularization of the lateral line organ in the Atlantic cod: involvement of the secondary vascular system (2008)
    Wiley
    In:  Journal of Zoology, 276 (2). pp. 142-148.
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    Publication Date: 2018-03-15
    Description: Sections of the lateral line organ, primary and secondary blood vessels and skin from the Atlantic cod Gadus morhua, Linnaeus 1758, were examined by light and transmission electron microscopy (TEM). The lateral line organ showed a structural analogy to the semicircular canals of the mammalian inner ear. A pericanalicular sinus (PCS), a canal of very loose connective tissue, surrounded the lateral line canal (LLC), separated by a multilayered epithelial wall. Located dorsal and ventral to the lateral line organ secondary vessels of capillary dimensions were found in association with the PCS. TEM of the wall of these dorso-ventral vessels showed single tight junction contacts between the endothelial cells, allowing paracellular fluid exchange between the secondary vascular system and the PCS, an indication supported by horseradish peroxidase (HRP) tracer experiments, which showed reaction products in the PCS within 2 h after injecting HRP into the systemic circulation. The multilayered epithelial wall of the LLC showed multiple tight junctions between cells, making this boundary permeable only through transcellular transport.
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  • 21
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    Regulation of gas vesicle content and buoyancy in light- or phosphate-limited cultures of Aphanizomenon flos-aquae (Cyanophyta) (2004)
    Wiley
    In:  Journal of Phycology, 23 (1). pp. 70-78.
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    Publication Date: 2018-07-20
    Description: Measurements of the gas vesicle space in steady‐state light or phosphate‐limited cultures of Aphanizomenon flos‐aquae Ralfs, strain 7905 showed that gas vesicle content decreased as energy‐limited growth rate increased hut was the same at several phosphate‐limited growth rates. Upon a decrease in growth irradiance, gas vesicle content did increase in phosphate‐limited cultures, hut the cultures remained nonbuoyant as long as P was limiting. Buoyant, energy‐limited cultures lost their buoyancy in less than 2 h when exposed to higher irradiances. The primary mechanism for buoyancy loss was the accumulation of polysaccharide as ballast. Collapse of gas vesicles by turgor pressure played a minor role in the loss of buoyancy. When cultures were exposed to higher irradiances, cells continued to synthesize gas vesicles at the same rate as before the shift for at least 1 generation time. The amount of ballast required to make individual filaments in the population sink varied 4‐fold. This variation appears to be due to differences in gas vesicle content among individual filaments.
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  • 22
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    Taxonomy and Ecology of Sponge-AssociateMarionina spp. (Clitellata : Enchytraeidae) from the Horomatangi Geothermal System of Lake Taupo, New Zealand (2004)
    Wiley
    In:  International Review of Hydrobiology, 89 (1). pp. 58-67.
    Details
    Publication Date: 2017-06-28
    Description: The dissection of Heterorotula sponges collected in an area of geothermal activity at 126–145 m depth on the floor of Lake Taupo (de Rondeet al., 2002) revealed a dense population of associated Enchytraeidae. They represent three species of Marionina, two of which known but exotic (the Palaearctic M. ripariaBretscher, 1899 and the Chinese M. seminudaXie and Rota, 2001), and one new to science, M. spongicola sp. n. This is the first report of an ecological association between enchytraeids and poriferans in the lake profundal zone. The possible nature of such relationship (casual contact for feeding or dwelling for food and shelter) is discussed.
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    Membrane lipid patterns typify distinct anaerobic methanotrophic consortia (2004)
    National Academy of Sciences
    In:  PNAS Proceedings of the National Academy of Sciences of the United States of America, 101 (30). pp. 11111-11116.
    Details
    Publication Date: 2017-06-28
    Description: The anaerobic oxidation of methane (AOM) is one of the major sinks of this substantial greenhouse gas in marine environments. Recent investigations have shown that diverse communities of anaerobic archaea and sulfate-reducing bacteria are involved in AOM. Most of the relevant archaea are assigned to two distinct phylogenetic clusters, ANME-1 and ANME-2. A suite of specific 13C-depleted lipids demonstrating the presence of consortia mediating AOM in fossil and recent environments has been established. Here we report on substantial differences in the lipid composition of microbial consortia sampled from distinct compartments of AOM-driven carbonate reefs growing in the northwestern Black Sea. Communities in which the dominant archaea are from the ANME-1 cluster yield internally cyclized tetraether lipids typical of thermophiles. Those in which ANME-2 archaea are dominant yield sn-2-hydroxyarchaeol accompanied by crocetane and crocetenes. The bacterial lipids from these communities are also distinct even though the sulfate-reducing bacteria all belong to the Desulfosarcina/Desulfococcus group. Nonisoprenoidal glycerol diethers are predominantly associated with ANME-1-dominated communities. Communities with ANME-2 yield mainly conventional, ester-linked diglycerides. ANME-1 archaea and associated sulfate-reducing bacteria seem to be enabled to use low concentrations of methane and to grow within a broad range of temperatures. Our results offer a tool for the study of recent and especially of fossil methane environments.
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  • 24
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    Control of Lacustrine Phytoplankton by Nutrients: Erosion of the Phosphorus Paradigm (2008)
    Wiley
    In:  International Review of Hydrobiology, 93 (4-5). pp. 446-465.
    Details
    Publication Date: 2017-10-25
    Description: Control of lacustrine phytoplankton biomass by phosphorus is one of the oldest and most stable paradigms in modern limnology. Even so, evidence from bioassays conducted by multiple investigators at numerous sites over the last three decades shows that N is at least as likely as P to be limiting to phytoplankton growth. A number of important flaws in the evidence supporting the phosphorus paradigm have contributed to an unrealistic degree of focus on phosphorus as a controlling element. These include insufficient skeptism in interpretation of: 1) the phosphorus: chlorophyll correlation in lakes, 2) the results of whole-lake fertilization experiments, and 3) stoichiometric arguments based on total N:total P ratios for inland waters. A new paradigm based on parity between N and P control of phytoplankton biomass in lakes seems more viable than the P paradigm. The new paradigm renews interest in the degree to which plankton communities are molded in composition by small differences in relative availability of N and P, the mechanisms that lead to a high frequency of N limitation in oligotrophic lakes, and the failure of aquatic N-fixers to compensate significantly for N deficiency under most conditions. A new N/P paradigm still must acknowledge that suppression of P loading often will be the most effective means of reducing phytoplankton biomass in eutrophic lakes, even if N is initially limiting.
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  • 25
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    New Mono- and Dimeric Members of the Secalonic Acid Family: Blennolides A–G Isolated from the FungusBlennoria sp. (2008)
    Wiley
    In:  Chemistry - a European Journal, 14 (16). pp. 4913-4923.
    Details
    Publication Date: 2018-02-20
    Description: Blennolides A–G (2–8), seven unusual chromanones, were isolated together with secalonic acid B (1) from Blennoria sp., an endophytic fungus from Carpobrotus edulis. This is the first reported isolation of the blennolides 2 and 3 (hemisecalonic acids B and E), the existence of which as the monomeric units of the dimeric secalonic acids had long been postulated. A compound of the proposed structure 4 (β-diversonolic ester) will need to be revised, as its reported data do not fit those of the established structure of blennolide C (4). Other monomers, the blennolides D–F (5–7) seem to be derived from blennolides A (2) and B (3) by rearrangement of the hydroaromatic ring. The heterodimer 8, composed of the monomeric blennolide A (2) and the rearranged 11-dehydroxy derivative of blennolide E (6), extends the ergochrome family with an ergoxanthin type of skeleton. The structures of the new compounds were elucidated by detailed spectroscopic analysis and further confirmed by an X-ray diffraction study of a single crystal of 2. The absolute configurations were determined by TDDFT calculations of CD spectra, including the solid-state CD/TDDFT approach. Preliminary studies showed strong antifungal and antibacterial activities of these compounds against Microbotryum violaceum and Bacillus megaterium, respectively. They were also active against the alga Chlorella fusca and the bacterium Escherichia coli.
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  • 26
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    Multiple marking of otoliths of brown trout,Salmo truttaL., with alizarin redS to compare efficiency of stocking of three early life stages (2009)
    Wiley
    In:  Fisheries Management and Ecology, 16 (3). pp. 219-224.
    Details
    Publication Date: 2018-03-22
    Description: This study examined stocking with three early life stages of brown trout, Salmo trutta L., in the context of rehabilitating a native lineage. Experimental sections in five streams were stocked successively with three stages (I: unfed fry at the end of the reabsorption phase, II: fed fry measuring 2–3 cm and III: fed fry measuring 4–5 cm) derived from a hatchery stock bred from wild spawners. The three stages were distinguished by single or multiple fluoromarking of the otoliths with alizarin redS. The index of relative stocking efficiency was greater for stage II than for stage I in all sections and equivalent or greater than that for stage III. Stage II achieved significantly larger mean length and weight in autumn than stage III stockings.
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  • 27
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    When to go: optimization of host switching in parasites with complex life cycles (2009)
    Wiley
    In:  Evolution, 63 (8). pp. 1976-1986.
    Details
    Publication Date: 2020-07-31
    Description: Sections PDFPDF Tools Share Abstract Many trophically transmitted parasites have complex life cycles: they pass through at least one intermediate host before reproducing in their final host. Despite their economic and theoretical importance, the evolution of such cycles has rarely been investigated. Here, combining a novel modeling approach with experimental data, we show for the first time that an optimal transfer time between hosts exists for a “model parasite,” the tapeworm Schistocephalus solidus , from its first (copepod) to its second (fish) intermediate host. When transferring between hosts around this time, (1) parasite performance in the second intermediate host, (2) reproductive success in the final host, and (3) fitness in the next generation is maximized. At that time, the infected copepod's behavior changes from predation suppression to predation enhancement. The optimal time for switching manipulation results from a trade‐off between increasing establishment probability in the next host and reducing mortality in the present host. Our results show that these manipulated behavioral changes are adaptive for S. solidus , rather than an artifact, as they maximize parasite fitness.
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  • 28
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    Gravitational spreading and formation of new rift zones on overlapping volcanoes (2006)
    Wiley
    In:  Terra Nova, 18 (1). pp. 26-33.
    Details
    Publication Date: 2019-09-23
    Description: Large volcanic edifices are often shaped by the coalescence of adjacent volcanoes as well as intrusive rift zones and gravitational spreading. To better understand the structure of such volcanoes we designed analogue experiments simulating gravitational spreading of an edifice made by overlapping cones of different age, and examined the formation of rift zones. The results allow distinction of two main rift geometries. (i) Spreading edifices of similar age that partly overlap, tend to develop a rift zone approximately perpendicular to the boundary of both volcanoes. Such a rift zone causes two volcanoes to grow together and form an elongated topographic ridge. (ii) Partly overlapping volcanoes of different age are spreading at different rates and thus form a rift zone parallel to the boundary of both volcanoes. Such a rift zone causes two volcanoes to structurally separate. The results are widely applicable for large volcanoes subject to rifting and flank spreading, which we demonstrate for Réunion Island and for southern Hawaii.
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  • 29
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    MHC-based mate choice combines good genes and maintenance of MHC polymorphism (2009)
    Wiley
    In:  Molecular Ecology, 18 . pp. 3316-3329.
    Details
    Publication Date: 2016-05-31
    Description: Polymorphicgenesofthemajorhistocompatibilitycomplex(MHC)areregardedasessential genes for individual fitness under conditions of natural and sexual selection. To test this hypothesis, we investigated the ultimate individual fitness trait — that of reproductive success. We used three-spined sticklebacks (Gasterosteus aculeatus) in seminatural enclosures, located in natural breeding areas where the experimental fish had been caught. During their reproductive period, fish were exposed continuously to their natural sympatric parasites. By genotyping almost 4000 eggs with nine microsatellites, we determined parenthood and inferred female mating decision. We found that with reference to their own MHC profile, female sticklebacks preferred to mate with males sharing an intermediate MHC diversity. In addition, males with a specific MHC haplotype were bigger and better at fighting a common parasite (Gyrodactylus sp.). This translated directly into Darwinian fitness since fish harbouring this specific MHC haplotype were more likely to be chosen and had a higher reproductive output. We conclude that females also based their mating decision on a specific MHChaplotype conferring resistance against a common parasite. This identifies and supports ‘good genes’. We argue that such an interaction between host and parasite driving assortative mating is not only a prerequisite for negative frequency-dependent selection — a potential mechanism to explain the maintenance of MHC polymorphism, but also potentially speciation.
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    The use of Fick's First Law for predicting porewater nutrient fluxes under diffusive conditions (2001)
    Wiley
    In:  Hydrological Processes, 15 (13). pp. 2435-2451.
    Details
    Publication Date: 2020-07-29
    Description: Porewater fluxes into or out of the sediments in aquatic systems are frequently estimated using Fick's First Law. This assumes that diffusive processes control the transport of nutrients. As a corollary, advection, bioturbation and chemical processes are assumed not to be significant. Through a series of sediment core incubations, this paper seeks to quantify the uncertainties involved in such assumptions. Duplicate sediment cores were collected from 28 sites along the Swan–Canning Estuary, returned to the laboratory and incubated under oxic or anoxic conditions. Porewater nutrient concentrations, sediment porosity and initial nutrient concentrations in the overlying water were measured. These parameters were used to estimate the expected nutrient fluxes via Fick's First Law. The estimated fluxes were then compared with measured fluxes of nutrients out of the sediments over the incubation period. Severe bioturbation occurred in several of the anoxic treatments, resulting in large releases of nutrients into the overlying water. Aside from these bioturbated cores, phosphate and ammonium fluxes under anoxic conditions are well predicted by Fick's First Law. Nitrate fluxes are predicted well under oxic conditions. For coarse sediments (D10 averaging 0·3 mm) and under redox conditions favourable for nutrient release, Fick's First Law predicted close to 100% of the observed fluxes. For finer grain sediments (D10 〈 0·01 mm), Fick's First Law overestimated the observed flux by up to 40%. Under unfavourable oxygen conditions, chemical retardation processes are likely to dominate fluxes, and the error associated with using Fick's First Law is increased. These results confirm the usefulness of using Fick's First Law for a baseline estimate of nutrient fluxes under favourable redox conditions. Much greater care must be taken when using Fick's First Law to estimate nutrient fluxes under unfavourable redox conditions, or under conditions when bioturbation is likely to be severe.
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    Effects of attached data loggers on the activity budgets of captive Humboldt Penguins (2002)
    Wiley
    In:  Zoo Biology, 21 (4). pp. 365-373.
    Details
    Publication Date: 2017-12-05
    Description: Although they can provide valuable information on at-sea ecology, data-loggers may adversely affect energetics, diving performance, and breeding success of equipped birds. With the aim of determining the effects of leg-attached data-loggers on the activity budgets of Humboldt penguins (Spheniscus humboldti) while on land, we equipped birds kept at the Landau Zoo, Landau, Germany, with such devices. We followed them during sample periods and recorded the occurrence and length of behaviors. Birds quickly habituated to the devices within 1 day of deployment, and mean rates of device-pecking were low (0.7–1.7 pecks/hr), with device-induced behaviors accounting for 〈1% of the mean daily activity budget. The method of device attachment appears behaviorally less stressful than the traditional tape-based system in which devices are normally attached to the penguin's back. By facilitating the testing of newly developed data-loggers on captive birds, or the development of methods for device attachment, zoos and aquaria may strengthen their role in animal conservation by helping research on free-ranging animals.
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    Seismic reflection along the path of the Mediterranean Undercurrent (2009)
    Wiley
    In:  Geophysical Journal International, 178 . pp. 1112-1131.
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    Publication Date: 2012-07-06
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    Effect of trench-outer rise bending-related faulting on seismic Poisson's ratio and mantle anisotropy: a case study offshore of Southern Central Chile (2008)
    Wiley
    In:  Geophysical Journal International, 173 . pp. 142-156.
    Details
    Publication Date: 2018-07-13
    Description: Several trench-outer rise settings in subduction zones worldwide are characterized by a high degree of alteration, fracturing and hydration. These processes are induced by bending-related faulting in the upper part of the oceanic plate prior to its subduction. Mapping of P- and S-wave velocity structures in this complex tectonic setting provides crucial information for understanding the evolution of the incoming oceanic lithosphere, and serves as a baseline for comparison with seismic measurements elsewhere. Active source seismic investigations at the outer rise off Southern Central Chile (∼43°S) were carried out in order to study the seismic structure of the oceanic Nazca Plate. Seismic wide-angle data were used to derive 2-D velocity models of two seismic profiles located seaward of the trench axis on 14.5 Ma old crust; P01a approximately parallel to the direction of spreading and P03 approximately parallel to the spreading ridge and trench axes. We determined P- and S-velocity models using 2-D traveltime tomography. We found that the Poisson's ratio in the upper crust (layer 2) ranges between ∼0.33 at the top of the crust to ∼0.28 at the layer 2/3 interface, while in the lowermost crust and uppermost mantle it reaches values of ∼0.26 and ∼0.29, respectively. These features can be explained by an oceanic crust significantly weathered, altered and fractured. Relative high Poisson's ratios in the uppermost mantle may be likely related to partially hydrated mantle and hence serpentinization. Thus, the seismic structure of the oceanic lithosphere at the Southern Central Chile outer rise exhibits notable differences from the classic ophiolite seismic model (‘normal’ oceanic crust). These differences are primarily attributed to fracturing and hydration of the entire ocean crust, which are direct consequences of strong bending-related faulting at the outer rise. On the other hand, the comparison of the uppermost mantle P-wave velocities at the crossing point between the perpendicular profiles (∼90 km oceanward from the trench axis) reveals a low degree of Pn anisotropy (〈2 per cent).
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    An estimate of anthropogenic CO〈sub〉2〈/sub〉 inventory from decadal changes in oceanic carbon content (2007)
    National Academy of Sciences
    In:  PNAS Proceedings of the National Academy of Sciences of the United States of America, 104 (9). pp. 3037-3042.
    Details
    Publication Date: 2019-09-23
    Description: Increased knowledge of the present global carbon cycle is important for our ability to understand and to predict the future carbon cycle and global climate. Approximately half of the anthropogenic carbon released to the atmosphere from fossil fuel burning is stored in the ocean, although distribution and regional fluxes of the ocean sink are debated. Estimates of anthropogenic carbon (C ant) in the oceans remain prone to error arising from (i) a need to estimate preindustrial reference concentrations of carbon for different oceanic regions, and (ii) differing behavior of transient ocean tracers used to infer C ant. We introduce an empirical approach to estimate C ant that circumvents both problems by using measurement of the decadal change of ocean carbon concentrations and the exponential nature of the atmospheric C ant increase. In contrast to prior approaches, the results are independent of tracer data but are shown to be qualitatively and quantitatively consistent with tracer-derived estimates. The approach reveals more C ant in the deep ocean than prior studies; with possible implications for future carbon uptake and deep ocean carbonate dissolution. Our results suggest that this approachs applied on the unprecedented global data archive provides a means of estimating the C ant for large parts of the world's ocean.
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    Sensitivities of marine carbon fluxes to ocean change (2009)
    National Academy of Sciences
    In:  PNAS Proceedings of the National Academy of Sciences of the United States of America, 106 . pp. 20602-20609.
    Details
    Publication Date: 2019-09-23
    Description: Throughout Earth's history, the oceans have played a dominant role in the climate system through the storage and transport of heat and the exchange of water and climate-relevant gases with the atmosphere. The ocean's heat capacity is ≈1,000 times larger than that of the atmosphere, its content of reactive carbon more than 60 times larger. Through a variety of physical, chemical, and biological processes, the ocean acts as a driver of climate variability on time scales ranging from seasonal to interannual to decadal to glacial–interglacial. The same processes will also be involved in future responses of the ocean to global change. Here we assess the responses of the seawater carbonate system and of the ocean's physical and biological carbon pumps to (i) ocean warming and the associated changes in vertical mixing and overturning circulation, and (ii) ocean acidification and carbonation. Our analysis underscores that many of these responses have the potential for significant feedback to the climate system. Because several of the underlying processes are interlinked and nonlinear, the sign and magnitude of the ocean's carbon cycle feedback to climate change is yet unknown. Understanding these processes and their sensitivities to global change will be crucial to our ability to project future climate change.
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  • 36
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    Rearing of Procypris rabaudi during early life history stages (2006)
    Wiley
    In:  Journal of Applied Ichthyology, 22 . pp. 530-535.
    Details
    Publication Date: 2017-07-03
    Description: The early life-history of Chinese rock carp Procypris rabaudi was investigated during a 56-day rearing period: 318 artificially propagated P. rabaudi larvae were reared throughout metamorphosis in a small-scale recirculation system (345 L water volume, 10 × 18 L rearing tanks, 150 L storage and filter compartment with bioballs, 20–30 larvae L−1) at the Institute of Hydrobiology, Wuhan, Hubei Province, China. The newly hatched larvae had an initial total length of 8.93 ± 0.35 mm SD (n = 10) at 3 days post-hatch and reached an average total length of 33.29 mm (±1.88 mm SD, n = 10) 56 days after hatching. Length increment averaged 0.45 mm day−1, resulting in a mean growth of 24.4 mm within the 56-day period. High mortality rates of up to 92% derived from an introduced fungus infection and subsequent treatment stress with malachite green. Our results indicate that Chinese rock carp can be raised successfully from artificially fertilized eggs. We therefore assume this species to be a candidate for commercial aquaculture.
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    Predator diversity hotspots in the blue ocean (2003)
    National Academy of Sciences
    In:  PNAS Proceedings of the National Academy of Sciences of the United States of America, 100 . pp. 9884-9888.
    Details
    Publication Date: 2019-01-21
    Description: Concentrations of biodiversity, or hotspots, represent conservation priorities in terrestrial ecosystems but remain largely unexplored in marine habitats. In the open ocean, many large predators such as tunas, sharks, billfishes, and sea turtles are of current conservation concern because of their vulnerability to overfishing and ecosystem role. Here we use scientific-observer records from pelagic longline fisheries in the Atlantic and Pacific Oceans to show that oceanic predators concentrate in distinct diversity hotspots. Predator diversity consistently peaks at intermediate latitudes (20–30° N and S), where tropical and temperate species ranges overlap. Individual hotspots are found close to prominent habitat features such as reefs, shelf breaks, or seamounts and often coincide with zooplankton and coral reef hotspots. Closed-area models in the northwest Atlantic predict that protection of hotspots outperforms other area closures in safeguarding threatened pelagic predators from ecological extinction. We conclude that the seemingly monotonous landscape of the open ocean shows rich structure in species diversity and that these features should be used to focus future conservation efforts.
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    Spatial variations of methanothrophic consortia at cold methane seeps: implications from a high-resolution molecular and isotopic approach (2005)
    Wiley
    In:  Geobiology, 334 . pp. 195-209.
    Details
    Publication Date: 2017-06-27
    Description: Anaerobic methane-oxidizing microbial communities in sediments at cold methane seeps are important factors in controlling methane emission to the ocean and atmosphere. Here, we investigated the distribution and carbon isotopic signature of specific biomarkers derived from anaerobic methanotrophic archaea (ANME groups) and sulphate-reducing bacteria (SRB) responsible for the anaerobic oxidation of methane (AOM) at different cold seep provinces of Hydrate Ridge, Cascadia margin. The special focus was on their relation to in situ cell abundances and methane turnover. In general, maxima in biomarker abundances and minima in carbon isotope signatures correlated with maxima in AOM and sulphate reduction as well as with consortium biomass. We found ANME-2a/DSS aggregates associated with high abundances of sn-2,3-di-O-isoprenoidal glycerol ethers (archaeol, sn-2-hydroxyarchaeol) and specific bacterial fatty acids (C16:1ω5c, cyC17:0ω5,6) as well as with high methane fluxes (Beggiatoa site). The low to medium flux site (Calyptogena field) was dominated by ANME-2c/DSS aggregates and contained less of both compound classes but more of AOM-related glycerol dialkyl glycerol tetraethers (GDGTs). ANME-1 archaea dominated deeper sediment horizons at the Calyptogena field where sn-1,2-di-O-alkyl glycerol ethers (DAGEs), archaeol, methyl-branched fatty acids (ai-C15:0, i-C16:0, ai-C17:0), and diagnostic GDGTs were prevailing. AOM-specific bacterial and archaeal biomarkers in these sediment strata generally revealed very similar δ13C-values of around −100. In ANME-2-dominated sediment sections, archaeal biomarkers were even more 13C-depleted (down to −120), whereas bacterial biomarkers were found to be likewise 13C-depleted as in ANME-1-dominated sediment layers (δ13C: −100). The zero flux site (Acharax field), containing only a few numbers of ANME-2/DSS aggregates, however, provided no specific biomarker pattern. Deeper sediment sections (below 20 cm sediment depth) from Beggiatoa covered areas which included solid layers of methane gas hydrates contained ANME-2/DSS typical biomarkers showing subsurface peaks combined with negative shifts in carbon isotopic compositions. The maxima were detected just above the hydrate layers, indicating that methane stored in the hydrates may be available for the microbial community. The observed variations in biomarker abundances and 13C-depletions are indicative of multiple environmental and physiological factors selecting for different AOM consortia (ANME-2a/DSS, ANME-2c/DSS, ANME-1) along horizontal and vertical gradients of cold seep settings.
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  • 39
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    Stage-specific mortality of Baltic cod (Gadus morhua L.) eggs (2000)
    Wiley
    In:  Journal of Applied Ichthyology, 16 . pp. 266-272.
    Details
    Publication Date: 2017-06-23
    Description: A study on cod egg mortality was carried out in the Bornholm Basin (southern central Baltic Sea) toward the end of July 1996. An initial egg aggregation marked by a satellite-tracked drifter buoy was sampled repeatedly over an 11-day period; profiles of temperature, salinity and dissolved oxygen were concurrently recorded. Three replicate estimates of mortality were obtained for each pair of subsequent developmental stages from newly spawned eggs to early larvae. A consistent pattern of stage-specific mortality coincided well with previous experimental observations. Average daily mortality rates were 7.2% (eggs IA/IB), 38.7% (eggs (IB/II), 25.6% (eggs II/III), 40.0% (eggs III/IV), and 42.3% (eggs IV/early larvae). The cumulative mortality until hatch amounted to 99.9%. Results from hydrodynamic modelling, however, indicated that the drifter's trajectory was influenced by wind stress. Hence, the mortality rates might be biased despite the short sampling intervals; a modification of the sampling design is recommended for future studies.
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  • 40
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    Trophic Cascades in Marine and Freshwater Plankton (2008)
    Wiley
    In:  International Review of Hydrobiology, 93 (4-5). pp. 506-516.
    Details
    Publication Date: 2017-05-31
    Description: Transmission of top-down control from fish to phytoplankton via crustacean mesozooplankton is a cornerstone of limnetic plankton ecology. Such trophic cascades are less frequently reported from the marine pelagic. In this article a case is made for consideration of scale issues and for the distinction between full (affecting entire trophic levels) and partial (affecting only some functional groups) trophic cascades. Partial cascades are more widespread while the full cascades are either ephemeral or depend on the suppression of compensatory growth of the predation-resistant size-fractions of phytoplankton. This suppression can only be achieved if there is a persistent coexistence between zooplankton feeding on different parts of the phytoplankton size spectrum. This condition is fulfilled in plankton communities where microphageous cladocerans (mainly Daphnia) and microphageous copepods coexist (many lake communities) or where krill and copepods coexist (high latitude marine communities). It is not fulfilled in many temperate and low-latitude marine communities where copepods effectively suppress filter-feeding appendicularians. Thus, the observed difference in the frequency of marine and limnetic pelagic cascades is considered real. Are all trophic cascades wet?
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  • 41
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    Climate change impacts on structure and diversity of fish communities in rivers (2007)
    Wiley
    In:  Global Change Biology, 13 . pp. 1-12.
    Details
    Publication Date: 2018-05-17
    Description: It is widely accepted that climate change constrains biota. Yet, because of the lack of consistent multisite and multitaxon surveys, few studies have addressed general rules about how climate change impacts on structure and diversity of animal communities. Especially, the relative influence of nonclimatic anthropogenic disturbances on this impact is fairly unknown. Here, we present for the first time a meta-analysis assessing the effect of global warming on stream organisms. Fish communities of large rivers in France undergoing various anthropogenic pressures showed significant increase in proportions of warm-water species and of specific richness during the last 15–25 years. Conversely, the equitability decreased, indicating a gradual decrease of the number of dominant species. Finally, the total abundance increased, coupled with rejuvenation and changes in size-structure of the communities. Interestingly, most of these effects were not depressed by the strength of nonclimatic anthropogenic disturbances. Conversely, geographical location of communities and especially closeness of natural barriers to migration could influence their response to climate change. Indeed, increase in the proportion of southern species seemed hindered at sites located close to the southern limit of the European species’ geographical ranges. This work provides new evidence that climate change have deep impacts on communities which, by overtaking the effects of nonclimatic anthropogenic disturbances, could be more substantial than previously thought. Overall, our results stress the importance of considering climate change impacts in studies addressing community dynamics, even in disturbed sites.
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  • 42
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    Consumer effects decline with prey diversity (2004)
    Wiley
    In:  Ecology Letters, 7 . pp. 192-201.
    Details
    Publication Date: 2017-02-22
    Description: While consumer species diversity is known to influence the capture of limited resources, little is known about how prey diversity impacts the transfer of energy and matter among trophic levels. Here, we perform a meta-analysis of experiments that have examined the impact of grazers on the biomass of periphytic algae to test the hypothesis that the magnitude of consumer (grazer) effects on prey (algae) depends on the species diversity of the prey assemblage. The analysis reveals that consumer effects tend to decrease as the diversity of a prey assemblage increases. This trend is robust for several different, yet complementary indices of grazer effect size and algal diversity. The trend also remains significant after statistically controlling for a variety of factors that can covary with prey diversity among studies. We discuss several possible mechanisms for the documented pattern, such as diversity enhancing the probability of inedibility and of positive interactions.
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  • 43
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    Co-occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland) (2009)
    Wiley
    In:  Environmental Microbiology, 11 (8). pp. 1945-1958.
    Details
    Publication Date: 2018-09-12
    Description: The nitrogen cycling of Lake Cadagno was investigated by using a combination of biogeochemical and molecular ecological techniques. In the upper oxic freshwater zone inorganic nitrogen concentrations were low (up to ∼3.4 μM nitrate at the base of the oxic zone), while in the lower anoxic zone there were high concentrations of ammonium (up to 40 μM). Between these zones, a narrow zone was characterized by no measurable inorganic nitrogen, but high microbial biomass (up to 4 × 107 cells ml−1). Incubation experiments with 15N-nitrite revealed nitrogen loss occurring in the chemocline through denitrification (∼3 nM N h−1). At the same depth, incubations experiments with 15N2- and 13CDIC-labelled bicarbonate, indicated substantial N2 fixation (31.7–42.1 pM h−1) and inorganic carbon assimilation (40–85 nM h−1). Catalysed reporter deposition fluorescence in situ hybridization (CARD-FISH) and sequencing of 16S rRNA genes showed that the microbial community at the chemocline was dominated by the phototrophic green sulfur bacterium Chlorobium clathratiforme. Phylogenetic analyses of the nifH genes expressed as mRNA revealed a high diversity of N2 fixers, with the highest expression levels right at the chemocline. The majority of N2 fixers were related to Chlorobium tepidum/C. phaeobacteroides. By using Halogen In Situ Hybridization-Secondary Ion Mass Spectroscopy (HISH-SIMS), we could for the first time directly link Chlorobium to N2 fixation in the environment. Moreover, our results show that N2 fixation could partly compensate for the N loss and that both processes occur at the same locale at the same time as suggested for the ancient Ocean.
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  • 44
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    Lower slope morphology of the Sumatra trench system (2008)
    Wiley
    In:  Basin Research, 20 (4). pp. 519-529.
    Details
    Publication Date: 2019-01-21
    Description: At convergent margins, the structure of the subducting oceanic plate is one of the key factors controlling the morphology of the upper plate. We use high-resolution seafloor mapping and multichannel seismic reflection data along the accretionary Sumatra trench system to investigate the morphotectonic response of the upper plate to the subduction of lower plate fabric. Upper plate segmentation is reflected in varying modes of mass transfer. The deformation front in the southern Enggano segment is characterized by neotectonic formation of a broad and shallow fold-and-thrust belt consistent with the resumption of frontal sediment accretion in the wake of oceanic relief subduction. Conversely, surface erosion increasingly shapes the morphology of the lower slope and accretionary prism towards the north where significant oceanic relief is subducted. Subduction of the Investigator Fracture Zone and the fossil Wharton spreading centre in the Siberut segment exemplifies this. Such features also correlate with an irregularly trending deformation front suggesting active frontal erosion of the upper plate. Lower plate fabric extensively modulates upper plate morphology and the large-scale morphotectonic segmentation of the Sumatra trench system is linked to the subduction of reactivated fracture zones and aseismic ridges of the Wharton Basin. In general, increasing intensity of mass-wasting processes, from south to north, correlates with the extent of oversteepening of the lower slope (lower slope angle of 3.8 degrees in the south compared with 7.6 degrees in the north), probably in response to alternating phases of frontal accretion and sediment underthrusting. Accretionary mechanics thus pose a second-order factor in shaping upper plate morphology near the trench.
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  • 45
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    Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation (2008)
    National Academy of Sciences
    In:  PNAS Proceedings of the National Academy of Sciences of the United States of America, 105 (30). pp. 10438-10443.
    Details
    Publication Date: 2016-10-25
    Description: Marine primary productivity is iron (Fe)-limited in vast regions of the contemporary oceans, most notably the high nutrient low chlorophyll (HNLC) regions. Diatoms often form large blooms upon the relief of Fe limitation in HNLC regions despite their prebloom low cell density. Although Fe plays an important role in controlling diatom distribution, the mechanisms of Fe uptake and adaptation to low iron availability are largely unknown. Through a combination of nontargeted transcriptomic and metabolomic approaches, we have explored the biochemical strategies preferred by Phaeodactylum tricornutum at growth-limiting levels of dissolved Fe. Processes carried out by components rich in Fe, such as photosynthesis, mitochondrial electron transport, and nitrate assimilation, were down-regulated. Our results show that this retrenchment is compensated by nitrogen (N) and carbon (C) reallocation from protein and carbohydrate degradation, adaptations to chlorophyll biosynthesis and pigment metabolism, removal of excess electrons by mitochondrial alternative oxidase (AOX) and non-photochemical quenching (NPQ), and augmented Fe-independent oxidative stress responses. Iron limitation leads to the elevated expression of at least three gene clusters absent from the Thalassiosira pseudonana genome that encode for components of iron capture and uptake mechanisms.
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  • 46
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    Ecological modulation of environmental stress: interactions between UV radiation, epibiotic snail embryos, plants and herbivores (2008)
    Wiley
    In:  Journal of Animal Ecology, 77 (3). pp. 549-557.
    Details
    Publication Date: 2017-06-09
    Description: The distribution of egg masses of the freshwater snails Lymnaea stagnalis and Planorbarius corneus on the undersides of water lily leaves (e.g. Nuphar lutea) is related to the prevalence of the leaf-mining beetle Galerucella nymphaeae. When given the choice, Planorbarius significantly avoids leaves that were infested by the mining beetle. Conversely, Lymnaea did not discriminate against mined leaves. Intact Nuphar leaves block over 95% of incident ultraviolet radiation. Yet, ultraviolet transmission reaches almost 100% under beetle mining scars. These are several times wider than snail embryos. When exposed to natural sunlight, Lymnaea embryos proved to be resistant to ambient ultraviolet, while Planorbarius embryos were rapidly killed. Thus, one selective advantage of Planorbarius discrimination against mined leaves when depositing its eggs could be the avoidance of ultraviolet radiation passing through mining scars. Other mining-related modifications of the leaves, reduced area, decreased longevity, altered aufwuchs (i.e. biofilm and epibionts) are discussed but seem less relevant for the oviposition preference of Planorbarius. The discriminatory behaviour of this snail species was triggered by water-borne cues emitted by the damaged leaf, not by the eggs or larvae of the beetle. This study illustrates how environmental stress on a given species, ultraviolet radiation in this case, can be ecologically buffered (shading by Nuphar) or enhanced (reduction of Nuphar shading through beetle mining) by associated species. It highlights how the impact of a given stress depends on the identity of the target species as well as on the identity and role of other species in the community.
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  • 47
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    The Calcium Isotope Composition (δ44/40Ca) of NIST SRM 915b and NIST SRM 1486 (2008)
    International Association of Geoanalysts | Wiley
    In:  Geostandards and Geoanalytical Research, 32 (2). pp. 27-32.
    Details
    Publication Date: 2019-08-08
    Description: The calcium isotopic composition of NIST SRM 915b and 1486 provided by the National Institute of Standards and Technology was analysed. The δ44/40Ca values of the two reference materials relative to NIST SRM 915a were: NIST SRM 915b =+0.72 ± 0.04‰ and NIST SRM 1486 =−1.01 ± 0.02‰. NIST SRM 1486 did not require any chemical separation prior to measurement. La composition isotopique du calcium de NIST SRM 915b et 1486, fournis par l'Institut National des Standards et de la Technologie (NIST), a été analysée. Les valeurs du δ44/40Ca obtenues sur ces deux matériaux de référence, relativement au NIST SRM 915a sont: NIST SRM 915b =+0.72 ± 0.04‰ et NIST SRM 1486 =−1.01 ± 0.02‰. Le NIST SRM 1486 n'a nécessité aucune séparation chimique avant analyse.
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  • 48
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    An individual based model for the direct conversion of otolith into somatic growth rates (2007)
    Wiley
    In:  Fisheries Oceanography, 16 (3). pp. 207-215.
    Details
    Publication Date: 2019-02-27
    Description: Otolith increment width and larval fish data (length and weight) were used to develop an individual-based model (IBM) to describe daily resolved growth rates of North Sea herring (Clupea harengus) larvae (Autumn Spawners) caught during International Herring Larvae Surveys in the ICES area IVa from 1990 to 1998. The model combines sagittal otolith readings (core and individual increment measurements), larval standard length and weight data, and solves an over-determined set of linear system equations for all parameters using the method of least square residuals. The model consists of a matrix, which describes the increment width formation of 119 larvae, a vector containing their length/weight measurements, and a vector describing residuals. The solution vector yields age-dependent maximum somatic growth rates of herring larvae up to an age of 41 days with sizes ranging from 10 to 25 mm. The observed environmental temperature in which larvae dwelled was relatively uniform. Therefore, measured increment width was individually used to determine daily growth from any single larva in relation to their potential maximum growth under optimal feeding conditions. The results are discussed with respect to the spatial and temporal variability of larval occurrence. Finally, an analysis of error estimation of the larval growth characteristics is presented.
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  • 49
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    Cascading predation effects of Daphnia and copepods on microbial food web components (2003)
    Wiley
    In:  Freshwater Biology, 48 (12). pp. 2174-2193.
    Details
    Publication Date: 2017-01-16
    Description: 1. We performed a mesocosm experiment to investigate the structuring and cascading effects of two predominant crustacean mesozooplankton groups on microbial food web components. The natural summer plankton community of a mesotrophic lake was exposed to density gradients of Daphnia and copepods. Regression analysis was used to reveal top-down impacts of mesozooplankton on protists and bacteria after days 9 and 15. 2. Selective grazing by copepods caused a clear trophic cascade via ciliates to nanoplankton. Medium-sized (20-40 mum) ciliates (mainly Oligotrichida) were particularly negatively affected by copepods whereas nanociliates (mainly Prostomatida) became more abundant. Phototrophic and heterotrophic nanoflagellates increased significantly with increasing copepod biomass, which we interpret as an indirect response to reduced grazing pressure from the medium-sized ciliates. 3. In Daphnia-treatments, ciliates of all size classes as well as nanoflagellates were reduced directly but the overall predation effect became most strongly visible after 15 days at higher Daphnia biomass. 4. The response of bacterioplankton involved only modest changes in bacterial biomass and cell-size distribution along the zooplankton gradients. Increasing zooplankton biomass resulted either in a reduction (with Daphnia) or in an increase (with copepods) of bacterial biovolume, activity and production. Patterns of bacterial diversity, as measured by polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE), showed no distinct grouping after 9 days, whereas a clear treatment-coupled similarity clustering occurred after 15 days. 5. The experiment demonstrated that zooplankton-mediated predatory interactions cascade down to the bacterial level, but also revealed that changes occurred rather slowly in this summer plankton community and were most pronounced with respect to bacterial activity and composition.
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  • 50
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    Structure-activity relationships of oligoagar elicitors towards Gracilaria conferta (Rhodophyta) (2001)
    Wiley
    In:  Journal of Phycology, 37 (3). pp. 418-426.
    Details
    Publication Date: 2018-04-26
    Description: Agar oligosaccharides in the neoagarobiose series were prepared by partial enzyme hydrolysis, separated on Biogel P2 and P4, and analyzed by high-performance anion exchange chromatography with pulsed amperometric detection, yielding neoagarosaccharide fractions with a disaccharide repetition degree ranging from 1 (neoagarobiose) to more than 8 (neoagarohexadecaose). These fractions were analyzed for their biological activity toward the marine red alga Gracilaria conferta (Schousboe ex Montagne) J. et G. Feldmann in terms of increase of oxygen consumption, release of hydrogen peroxide, elimination of epiphytic bacteria, and induction of thallus tip bleaching. The structure–activity and dose–response relationships of neoagarosaccharides were very similar in the respiratory and oxidative burst responses and in their bactericidal properties, with neoagarosaccharides consisting of 6 to 8 disaccharide repeating units being the most active. All these responses were competitively inhibited by the reduced form of neoagarohexaose, neoagarohexaitol. In contrast, the tip-bleaching response was light dependent, required much higher concentrations of neoagarosaccharides, and was not inhibited by neoagarohexaitol, suggesting that it is an unspecific oxidative stress reaction. Putative structural effects on the recognition of endogenous agar-oligosaccharide elicitors by G. conferta are discussed.
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  • 51
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    What happens to the kype of male Atlantic salmon (Salmo salar) that survive spawning? (2004)
    Wiley
    In:  Journal of Morphology, 260 .
    Details
    Publication Date: 2018-04-03
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  • 52
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    Foraging interactions of wandering albatrosses Diomedea exulans breeding on Marion Island with longline fisheries in the southern Indian Ocean: Seasonal and gender effects (2002)
    Wiley
    In:  Ibis, 144 (3). E141-E154.
    Details
    Publication Date: 2017-01-30
    Description: Wandering Albatrosses Diomedea exulans are frequently killed when they attempt to scavenge baited hooks deployed by long-line fishing vessels. We studied the foraging ecology of Wandering Albatrosses breeding on Marion Island in order to assess the scale of interactions with known long-line fishing fleets. During incubation and late chick-rearing, birds foraged further away from the island, in warmer waters, and showed high spatial overlap with areas of intense tuna Thunnus spp. long-line fishing. During early chick-rearing, birds made shorter foraging trips and showed higher spatial overlap with the local Patagonian Toothfish Dissostichus eleginoides long-line fishery. Tracks of birds returning with offal from the Toothfish fishery showed a strong association with positions at which Toothfish long-lines were set and most diet samples taken during this stage contained fishery-related items. Independent of these seasonal differences, females foraged further from the islands and in warmer waters than males. Consequently, female distribution overlapped more with tuna long-line fisheries, whereas males interacted more with the Toothfish long-line fishery. These factors could lead to differences in the survival probabilities of males and females. Non-breeding birds foraged in warmer waters and showed the highest spatial overlap with tuna long-line fishing areas. The foraging distribution of Marion Island birds showed most spatial overlap with birds from the neighbouring Crozet Islands during the late chick-rearing and non-breeding periods. These areas of foraging overlap also coincided with areas of intense tuna long-line fishing south of Africa. As the population trends of Wandering Albatrosses at these two localities are very similar, it is possible that incidental mortality during the periods when these two populations show the highest spatial overlap could be driving these trends.
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  • 53
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    Empirical equations for estimating maximum length from length at first maturity (2009)
    Wiley
    In:  Journal of Applied Ichthyology, 25 . pp. 611-613.
    Details
    Publication Date: 2017-07-03
    Description: 10.1111/j.1439-0426.2009.01215.x
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  • 54
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    Meta-analysis of cod-shrimp interactions reveals top-down control in oceanic food webs (2003)
    Wiley
    In:  Ecology, 84 (1). pp. 162-173.
    Details
    Publication Date: 2017-02-21
    Description: Here we present a meta-analytic approach to analyzing population interactions across the North Atlantic Ocean. We assembled all available biomass time series for a well-documented predator–prey couple, Atlantic cod (Gadus morhua) and northern shrimp (Pandalus borealis), to test whether the temporal dynamics of these populations are consistent with the “top-down” or the “bottom-up” hypothesis. Eight out of nine regions showed inverse correlations of cod and shrimp biomass supporting the “top-down” view. Exceptions occurred only close to the southern range limits of both species. Random-effects meta-analysis showed that shrimp biomass was strongly negatively related to cod biomass, but not to ocean temperature in the North Atlantic Ocean. In contrast, cod biomass was positively related to ocean temperature. The strength of the cod–shrimp relationship, however, declined with increasing mean temperature. These results show that changes in predator populations can have strong effects on prey populations in oceanic food webs, and that the strength of these interactions may be sensitive to changes in mean ocean temperature. This means that the effects of overfishing in the ocean cascade down to lower trophic levels, as has been shown previously for lakes and coastal seas. In order to further investigate these processes, we establish a methodological framework to analyze species interactions from time series data.
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  • 55
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    Molecular analysis of the distribution and phylogeny of the soxB gene among sulfur-oxidizing bacteria - evolution of the Sox sulfur-oxidizing enzyme system (2007)
    Wiley
    In:  Environmental Microbiology, 9 (12). pp. 2957-2977.
    Details
    Publication Date: 2019-09-23
    Description: The soxB gene encodes the SoxB component of the periplasmic thiosulfate-oxidizing Sox enzyme complex, which has been proposed to be widespread among the various phylogenetic groups of sulfur-oxidizing bacteria (SOB) that convert thiosulfate to sulfate with and without the formation of sulfur globules as intermediate. Indeed, the comprehensive genetic and genomic analyses presented in the present study identified the soxB gene in 121 phylogenetically and physiologically divergent SOB, including several species for which thiosulfate utilization has not been reported yet. In first support of the previously postulated general involvement of components of the Sox enzyme complex in the thiosulfate oxidation process of sulfur-storing SOB, the soxB gene was detected in all investigated photo- and chemotrophic species that form sulfur globules during thiosulfate oxidation (Chromatiaceae, Chlorobiaceae, Ectothiorhodospiraceae, Thiothrix, Beggiatoa, Thiobacillus, invertebrate symbionts and free-living relatives). The SoxB phylogeny reflected the major 16S rRNA gene-based phylogenetic lineages of the investigated SOB, although topological discrepancies indicated several events of lateral soxB gene transfer among the SOB, e.g. its independent acquisition by the anaerobic anoxygenic phototrophic lineages from different chemotrophic donor lineages. A putative scenario for the proteobacterial origin and evolution of the Sox enzyme system in SOB is presented considering the phylogenetic, genomic (sox gene cluster composition) and geochemical data.
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  • 56
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    The trace of the Pacific-Cocos-Nazca triple junction in the Central Pacific and the formation of an overlapping spreading centre (2008)
    Wiley
    In:  Terra Nova, 20 . pp. 246-251.
    Details
    Publication Date: 2019-01-24
    Description: The `plate tectonic mirror image' to the region of the Cocos and Nazca plates, which are currently being subducted beneath Central America, is preserved in the Central Pacific around 120°W just south of the equator. Cruise SO-180 investigated this remote area during project CENTRAL and acquired new magnetic and bathymetric data. A plate tectonic model for the ‘mirror image’ is presented based on the newly acquired as well as reprocessed existing data. Discordant magnetic anomaly patterns and bathymetric structures indicate at least two major reorganization events (19.5 and 14.7 Myr), which can be detected both in the Cocos-Nazca spreading system and in the East Pacific Rise. Irregularities in the anomaly pattern and curvilinear structures on the sea floor of the survey area are interpreted in terms of a fossil overlapping spreading centre at the location where the Farallon break-up originated.
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  • 57
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    Antifeeding defense in baltic macroalgae: induction by direct grazing vs. waterborne cues (2008)
    Wiley
    In:  Journal of Phycology, 44 . pp. 85-90.
    Details
    Publication Date: 2018-05-30
    Description: The prevalence of antigrazing defense induction and the cues triggering induction in marine macroalgae are generally not well understood. We examined the capacity of defense and the mechanisms of regulation in five common perennial macroalgal species from the Baltic Sea, Furcellaria lumbricalis (Huds.) J. V. Lamour., Delesseria sanguinea (Huds.) J. V. Lamour., Phyllophora pseudoceranoides (S. G. Gmel.) Newroth et A. R. A. Taylor, Fucus serratus L., and Fucus evanescens C. Agardh. Specifically, we investigated whether direct feeding and/or waterborne cues from feeding on neighboring conspecifics decreased the palatability of the tested algae. Direct feeding by the local isopod Idotea baltica triggered the induction of chemical defense in Fur. lumbricalis, D. sanguinea, P. pseudoceranoides, F. serratus, and F. evanescens. Conversely, we did not find any evidence for waterborne cues associated with feeding to trigger defense induction in neighboring conspecifics.
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  • 58
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    Methanogenic communities in permafrost-affected soils of the Laptev Sea coast, Siberian Arctic, characterized by 16S rRNA gene fingerprints (2007)
    Wiley
    In:  FEMS Microbiology Ecology, 59 (2). pp. 476-488.
    Details
    Publication Date: 2018-01-01
    Description: Permafrost environments in the Arctic are characterized by extreme environmental conditions that demand a specific resistance from microorganisms to enable them to survive. In order to understand the carbon dynamics in the climate-sensitive Arctic permafrost environments, the activity and diversity of methanogenic communities were studied in three different permafrost soils of the Siberian Laptev Sea coast. The effect of temperature and the availability of methanogenic substrates on CH4 production was analysed. In addition, the diversity of methanogens was analysed by PCR with specific methanogenic primers and by denaturing gradient gel electrophoresis (DGGE) followed by sequencing of DGGE bands reamplified from the gel. Our results demonstrated methanogenesis with a distinct vertical profile in each investigated permafrost soil. The soils on Samoylov Island showed at least two optima of CH4 production activity, which indicated a shift in the methanogenic community from mesophilic to psychrotolerant methanogens with increasing soil depth. Furthermore, it was shown that CH4 production in permafrost soils is substrate-limited, although these soils are characterized by the accumulation of organic matter. Sequence analyses revealed a distinct diversity of methanogenic archaea affiliated to Methanomicrobiaceae, Methanosarcinaceae and Methanosaetaceae. However, a relationship between the activity and diversity of methanogens in permafrost soils could not be shown.
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  • 59
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    The use of CORONA images in remote sensing of periglacial geomorphology: an illustration from the NE Siberian coast (2005)
    Wiley
    In:  Permafrost and Periglacial Processes, 16 (2). pp. 163-172.
    Details
    Publication Date: 2015-02-06
    Description: CORONA images have been used for the mapping of periglacial features on the Bykovsky Peninsula and adjacent Khorogor Valley in northeast Siberia. Features, mapped and analysed within a geographical information system, include thermokarst depressions, thermo-erosional valleys, thermo-erosional cirques, thermokarst lakes, thermokarst lagoons and pingos. More than 50% of the area is strongly influenced by thermally-induced subsidence. Thermokarst in the area is probably less active today than in the early-middle Holocene.
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  • 60
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    Abundance, distribution and potential activity of methane oxidizing bacteria in permafrost soils from the Lena Delta, Siberia (2007)
    Wiley
    In:  Environmental Microbiology, 9 (1). pp. 107-117.
    Details
    Publication Date: 2018-01-01
    Description: The methane oxidation potential of active layer profiles of permafrost soils from the Lena Delta, Siberia, was studied with regard to its respond to temperature, and abundance and distribution of type I and type II methanotrophs. Our results indicate vertical shifts within the optimal methane oxidation temperature and within the distribution of type I and type II methanotrophs. In the upper active layer, maximum methane oxidation potentials were detected at 21°C. Deep active layer zones that are constantly exposed to temperatures below 2°C showed a maximum potential to oxidize methane at 4°C. Our results indicate a dominance of psychrophilic methanotrophs close to the permafrost table. Type I methanotrophs dominated throughout the active layer profiles but their number strongly fluctuated with depth. In contrast, type II methanotrophs were constantly abundant through the whole active layer and displaced type I methanotrophs close to the permafrost table. No correlation between in situ temperatures and the distribution of type I and type II methanotrophs was found. However, the distribution of type I and type II methanotrophs correlated significantly with in situ methane concentrations. Beside vertical fluctuations, the abundance of methane oxidizers also fluctuated according to different geomorphic units. Similar methanotroph cell counts were detected in samples of a flood plain and a polygon rim, whereas cell counts in samples of a polygon centre were up to 100 times lower.
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  • 61
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    Methanogenic activity and biomass in Holocene permafrost deposits of the Lena Delta, Siberian Arctic and its implication for the global methane budget (2007)
    Wiley
    In:  Global Change Biology, 13 (5). pp. 1089-1099.
    Details
    Publication Date: 2017-12-31
    Description: Permafrost environments within the Siberian Arctic are natural sources of the climate relevant trace gas methane. In order to improve our understanding of the present and future carbon dynamics in high latitudes, we studied the methane concentration, the quantity and quality of organic matter, and the activity and biomass of the methanogenic community in permafrost deposits. For these investigations a permafrost core of Holocene age was drilled in the Lena Delta (72°22′N, 126°28′E). The organic carbon of the permafrost sediments varied between 0.6% and 4.9% and was characterized by an increasing humification index with permafrost depth. A high CH4 concentration was found in the upper 4 m of the deposits, which correlates well with the methanogenic activity and archaeal biomass (expressed as PLEL concentration). Even the incubation of core material at −3 and −6°C with and without substrates showed a significant CH4 production (range: 0.04–0.78 nmol CH4 h−1 g−1). The results indicated that the methane in Holocene permafrost deposits of the Lena Delta originated from modern methanogenesis by cold-adapted methanogenic archaea. Microbial generated methane in permafrost sediments is so far an underestimated factor for the future climate development.
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  • 62
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    Weichselian and Holocene palaeoenvironmental history of the Bol'shoy Lyakhovsky Island, New Siberian Archipelago, Arctic Siberia (2009)
    Wiley
    In:  Boreas, 38 (1). pp. 72-110.
    Details
    Publication Date: 2015-05-27
    Description: Cryolithological, ground ice and fossil bioindicator (pollen, diatoms, plant macrofossils, rhizopods, insects, mammal bones) records from Bol'shoy Lyakhovsky Island permafrost sequences (73°20′N, 141°30′E) document the environmental history in the region for the past c. 115 kyr. Vegetation similar to modern subarctic tundra communities prevailed during the Eemian/Early Weichselian transition with a climate warmer than the present. Sparse tundra-like vegetation and harsher climate conditions were predominant during the Early Weichselian. The Middle Weichselian deposits contain peat and peaty soil horizons with bioindicators documenting climate amelioration. Although dwarf willows grew in more protected places, tundra and steppe vegetation prevailed. Climate conditions became colder and drier c. 30 kyr BP. No sediments dated between c. 28.5 and 12.05 14C kyr BP were found, which may reflect active erosion during that time. Herb and shrubby vegetation were predominant 11.6–11.3 14C kyr BP. Summer temperatures were c. 4 °C higher than today. Typical arctic environments prevailed around 10.5 14C kyr BP. Shrub alder and dwarf birch tundra were predominant between c. 9 and 7.6 kyr BP. Reconstructed summer temperatures were at least 4 °C higher than present. However, insect remains reflect that steppe-like habitats existed until c. 8 kyr BP. After 7.6 kyr BP, shrubs gradually disappeared and the vegetation cover became similar to that of modern tundra. Pollen and beetles indicate a severe arctic environment c. 3.7 kyr BP. However, Betula nana, absent on the island today, was still present. Together with our previous study on Bol'shoy Lyakhovsky Island covering the period between about 200 and 115 kyr, a comprehensive terrestrial palaeoenvironmental data set from this area in western Beringia is now available for the past two glacial–interglacial cycles.
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  • 63
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    Phylogeography of lions (Panthera leossp.) reveals three distinct taxa and a late Pleistocene reduction in genetic diversity (2009)
    Wiley
    In:  Molecular Ecology, 18 (8). pp. 1668-1677.
    Details
    Publication Date: 2020-06-30
    Description: Lions were the most widespread carnivores in the late Pleistocene, ranging from southern Africa to the southern USA, but little is known about the evolutionary relationships among these Pleistocene populations or the dynamics that led to their extinction. Using ancient DNA techniques, we obtained mitochondrial sequences from 52 individuals sampled across the present and former range of lions. Phylogenetic analysis revealed three distinct clusters: (i) modern lions, Panthera leo; (ii) extinct Pleistocene cave lions, which formed a homogeneous population extending from Europe across Beringia (Siberia, Alaska and western Canada); and (iii) extinct American lions, which formed a separate population south of the Pleistocene ice sheets. The American lion appears to have become genetically isolated around 340 000 years ago, despite the apparent lack of significant barriers to gene flow with Beringian populations through much of the late Pleistocene. We found potential evidence of a severe population bottleneck in the cave lion during the previous interstadial, sometime after 48 000 years, adding to evidence from bison, mammoths, horses and brown bears that megafaunal populations underwent major genetic alterations throughout the last interstadial, potentially presaging the processes involved in the subsequent end-Pleistocene mass extinctions.
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    Analysis of the first genome fragment from the marine sponge-associated, novel candidate phylum Poribacteria by environmental genomics (2006)
    Wiley
    In:  Environmental Microbiology, 8 (4). pp. 612-624.
    Details
    Publication Date: 2016-11-04
    Description: The novel candidate phylum Poribacteria is specifically associated with several marine demosponge genera. Because no representatives of Poribacteria have been cultivated, an environmental genomic approach was used to gain insights into genomic properties and possibly physiological/functional features of this elusive candidate division. In a large-insert library harbouring an estimated 1.1 Gb of microbial community DNA from Aplysina aerophoba, a Poribacteria-positive 16S rRNA gene locus was identified. Sequencing and sequence annotation of the 39 kb size insert revealed 27 open reading frames (ORFs) and two genes for stable RNAs. The fragment exhibited an overall G+C content of 50.5% and a coding density of 86.1%. The 16S rRNA gene was unlinked from a conventional rrn operon. Its flanking regions did not show any synteny to other 16S rRNA encoding loci from microorganisms with unlinked rrn operons. Two of the predicted hypothetical proteins were highly similar to homologues from Rhodopirellula baltica. Furthermore, a novel kind of molybdenum containing oxidoreductase was predicted as well as a series of eight ORFs encoding for unusual transporters, channel or pore forming proteins. This environmental genomics approach provides, for the first time, genomic and, by inference, functional information on the so far uncultivated, sponge-associated candidate division Poribacteria.
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  • 65
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    Discordant distribution of populations and genetic variation in a sea star with high dispersal potential (2009)
    Wiley
    In:  Evolution, 63 (12). pp. 3214-3227.
    Details
    Publication Date: 2016-10-11
    Description: Patiria miniata, a broadcast-spawning sea star species with high dispersal potential, has a geographic range in the intertidal zone of the northeast Pacific Ocean from Alaska to California that is characterized by a large range gap in Washington and Oregon. We analyzed spatial genetic variation across the P. miniata range using multilocus sequence data (mtDNA, nuclear introns) and multilocus genotype data (microsatellites). We found a strong phylogeographic break at Queen Charlotte Sound in British Columbia that was not in the location predicted by the geographical distribution of the populations. However, this population genetic discontinuity does correspond to previously described phylogeographic breaks in other species. Northern populations from Alaska and Haida Gwaii were strongly differentiated from all southern populations from Vancouver Island and California. Populations from Vancouver Island and California were undifferentiated with evidence of high gene flow or very recent separation across the range disjunction between them. The surprising and discordant spatial distribution of populations and alleles suggests that historical vicariance (possibly caused by glaciations) and contemporary dispersal barriers (possibly caused by oceanographic conditions) both shape population genetic structure in this species.
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  • 66
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    Reconstruction of ice complex remnants on the eastern Siberian arctic shelf (2003)
    Wiley
    In:  Permafrost and Periglacial Processes, 14 (2). pp. 187-198.
    Details
    Publication Date: 2015-01-29
    Description: Based on the analysis of seafloor topography together with historical, geological and palaeogeographical data obtained from published and archived sources, the position of former Ice Complex (IC) islands has been reconstructed. Within the Laptev Sea shelf and in the western part of the East Siberian Sea shelf, most of these islands have been destroyed by coastal thermal erosion and thermal abrasion during the last thousand years or so. The IC islands were the remnants of the ice-rich syncryogenic freshwater terrestrial deposits (so called IC), which covered most of the arctic coastal plains and the emerged arctic shelf during the Late Pleistocene. At the present time, sandbanks exist at the places of former IC islands. These sandbanks are the subject of intense seafloor thermal abrasion. The approximate rates of seafloor thermal abrasion and the time of complete disappearance of these islands during the last thousand years have been estimated. The rate is different for different islands and for different time intervals. The most common values are between 0.02 and 0.3 m/year. Schematic maps of the former IC islands within the Laptev Sea and western part of the East Siberian Sea shelves have been compiled.
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  • 67
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    Moderately thermophilic nitrifying bacteria from a hot spring of the Baikal rift zone (2005)
    Wiley
    In:  FEMS Microbiology Ecology, 54 (2). pp. 297-306.
    Details
    Publication Date: 2015-02-23
    Description: Samples from three hot springs (Alla, Seya and Garga) located in the northeastern part of Baikal rift zone (Buryat Republic, Russia) were screened for the presence of thermophilic nitrifying bacteria. Enrichment cultures were obtained solely from the Garga spring characterized by slightly alkaline water (pH 7.9) and an outlet temperature of 75°C. The enrichment cultures of the ammonia- and nitrite oxidizers grew at temperature ranges of 27–55 and 40–60°C, respectively. The temperature optimum was approximately 50°C for both groups and thus they can be designated as moderate thermophiles. Ammonia oxidizers were identified with classical and immunological techniques. Representatives of the genus Nitrosomonas and Nitrosospira-like bacteria with characteristic vibroid morphology were detected. The latter were characterized by an enlarged periplasmic space, which has not been previously observed in ammonia oxidizers. Electron microscopy, denaturing gradient gel electrophoresis analyses and partial 16S rRNA gene sequencing provided evidence that the nitrite oxidizers were members of the genus Nitrospira.
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  • 68
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    Methanogenic community composition and anaerobic carbon turnover in submarine permafrost sediments of the Siberian Laptev Sea (2009)
    Wiley
    In:  Environmental Microbiology, 11 (3). pp. 657-668.
    Details
    Publication Date: 2019-01-01
    Description: The Siberian Laptev Sea shelf contains submarine permafrost, which was formed by flooding of terrestrial permafrost with ocean water during the Holocene sea level rise. This flooding resulted in a warming of the permafrost to temperatures close below 0°C. The impact of these environmental changes on methanogenic communities and carbon dynamics in the permafrost was studied in a submarine permafrost core of the Siberian Laptev Sea shelf. Total organic carbon (TOC) content varied between 0.03% and 8.7% with highest values between 53 and 62 m depth below sea floor. In the same depth, maximum methane concentrations (284 nmol CH4 g−1) and lowest carbon isotope values of methane (−72.2‰ VPDB) were measured, latter indicating microbial formation of methane under in situ conditions. The archaeal community structure was assessed by a nested polymerase chain reaction (PCR) amplification for DGGE, followed by sequencing of reamplified bands. Submarine permafrost samples showed a different archaeal community than the nearby terrestrial permafrost. Samples with high methane concentrations were dominated by sequences affiliated rather to the methylotrophic genera Methanosarcina and Methanococcoides as well as to uncultured archaea. The presented results give the first insights into the archaeal community in submarine permafrost and the first evidence for their activity at in situ conditions.
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    Evolution, systematics, and phylogeography of Pleistocene horses in the New World : a molecular perspective (2005)
    Public Library of Science (PLoS)
    In:  PLoS Biology, 3 (8). e241.
    Details
    Publication Date: 2016-10-12
    Description: The rich fossil record of horses has made them a classic example of evolutionary processes. However, while the overall picture of equid evolution is well known, the details are surprisingly poorly understood, especially for the later Pliocene and Pleistocene, c. 3 million to 0.01 million years (Ma) ago, and nowhere more so than in the Americas. There is no consensus on the number of equid species or even the number of lineages that existed in these continents. Likewise, the origin of the endemic South American genus Hippidion is unresolved, as is the phylogenetic position of the “stilt-legged” horses of North America. Using ancient DNA sequences, we show that, in contrast to current models based on morphology and a recent genetic study, Hippidion was phylogenetically close to the caballine (true) horses, with origins considerably more recent than the currently accepted date of c. 10 Ma. Furthermore, we show that stilt-legged horses, commonly regarded as Old World migrants related to the hemionid asses of Asia, were in fact an endemic North American lineage. Finally, our data suggest that there were fewer horse species in late Pleistocene North America than have been named on morphological grounds. Both caballine and stilt-legged lineages may each have comprised a single, wide-ranging species.
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  • 70
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    Physiology, phylogeny and in situ evidence for bacterial and archaeal nitrifiers in the marine sponge Aplysina aerophoba (2008)
    Wiley
    In:  Environmental Microbiology, 10 (11). pp. 2942-2955.
    Details
    Publication Date: 2019-01-10
    Description: The potential for nitrification in the Mediterranean sponge Aplysina aerophoba was assessed using a combined physiological and molecular approach. Nitrate excretion rates in whole sponges reached values of up to 344 nmol g(-1) dry weight (wt) h(-1) (unstimulated) and 1325 nmol g(-1) dry wt h(-1) (stimulated). Addition of nitrapyrin, a nitrification-specific inhibitor, effectively inhibited nitrate excretion. Ammonium was taken up by sponges in spring and excreted in fall, the sponges thus serving as either an ammonium sink or ammonium source. Nitrosospira cluster 1 and Crenarchaeota group I.1A 16S rRNA and amoA genes were recovered from A. aerophoba and other sponges from different world's oceans. The archaeal 16S rRNA genes formed a sponge-specific subcluster, indicating that their representatives are members of the stable microbial community of sponges. On the other hand, clustering was not evident for Nitrosospira rRNA genes which is consistent with their presence in sediment and seawater samples. The presence of both Nitrosospira cluster 1 and crenarchaeal group 1 phylotypes in sponge tissue was confirmed using fluorescently labelled 16S rRNA gene probes. This study contributes to an ongoing effort to link microbial diversity with metabolic functions in the phylogenetically diverse, elusive and so far uncultivated microbial communities of marine sponges.
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  • 71
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    The relationship between Chironomus plumosus burrows and the spatial distribution of pore-water phosphate, iron and ammonium in lake sediments (2007)
    Wiley
    In:  Freshwater Biology, 52 (2). pp. 331-343.
    Details
    Publication Date: 2015-10-19
    Description: 1. To study the influence of chironomids on the distribution of pore-water concentrations of phosphate, iron and ammonium, we conducted a laboratory experiment using mesocosms equipped with two-dimensional pore-water samplers, filled with lake sediment and populated with different densities of Chironomus plumosus. 2. Specially designed mesocosms were used in the study. A 6-mm deep space between the front plate and the pore-water sampler at the back plate was just thick enough to allow the chironomids to live undisturbed, yet thin enough to force all the burrows into a two-dimensional plane. 3. The courses of the burrows were observed during the experiment as oxidised zones surrounding them, as well as being identified with an X-ray image taken at the end of the experiment. 4. We investigated the relationship between C. plumosus burrows and spatial patterns of pore-water composition. Concentrations of the three ions were significantly less around ventilated burrows (54% to 24%), as bioirrigation caused a convective exchange of pore-water enriched with dissolved species compared with the overlying water, and also because oxygen imported into the sediment resulting in nitrification of ammonium, oxidation of iron(II) and a co-precipitation of phosphate with Fe(III) oxyhydroxides. 5. In mesocosms with chironomids, new (redox) interfaces occurred with diffusive pore-water gradients perpendicular to the course of burrows and the site of major phosphate, ammonium and iron(II) release shifted from the sediment surface to the burrow walls.
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  • 72
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    Single Crystals of Naturally Occurring Gas Hydrates: The Structures of Methane and Mixed Hydrocarbon Hydrates (2007)
    Wiley
    In:  Angewandte Chemie-International Edition, 46 (43). pp. 8220-8222.
    Details
    Publication Date: 2015-11-25
    Description: Samples from the bottom of the sea were used in the exact determination of the crystals structures of naturally occurring hydrocarbon hydrates. The hydrates of methane, ethane, and propane had a cubic structure II with hexakaidecahedral and pentagonal dodecahedral cages occupied by the guest molecules.
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  • 73
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    Big Effects from Small Changes: Possible Ways to Explore Nature's Chemical Diversity (2002)
    Wiley
    In:  ChemBioChem, 3 (7). pp. 619-627.
    Details
    Publication Date: 2016-02-19
    Description: Fungi or bacteria that produce secondary metabolites often have the potential to bring up various compounds from a single strain. The molecular basis for this well-known observation was confirmed in the last few years by several sequencing projects of different microorganisms. Besides well-known examples about induction of a selected biosynthesis (for example, by high- or low-phosphate cultivation media), no overview about the potential in this field for finding natural products was given. We have investigated the systematic alteration of easily accessible cultivation parameters (for example, media composition, aeration, culture vessel, addition of enzyme inhibitors) in order to increase the number of secondary metabolites available from one microbial source. We termed this way of revealing nature's chemical diversity the 'OSMAC (One Strain-Many Compounds) approach' and by using it we were able to isolate up to 20 different metabolites in yields up to 2.6 g L(-1) from a single organism. These compounds cover nearly all major natural product families, and in some cases the high production titer opens new possibilities for semisynthetic methods to enhance even more the chemical diversity of selected compounds. The OSMAC approach offers a good alternative to industrial high-throughput screening that focuses on the active principle in a distinct bioassay. In consequence, the detection of additional compounds that might be of interest as lead structures in further bioassays is impossible and clearly demonstrates the deficiency of the industrial procedure. Furthermore, our approach seems to be a useful tool to detect those metabolites that are postulated to be the final products of an amazing number of typical secondary metabolite gene clusters identified in several microorganisms. If one assumes a (more or less) defined reservoir of genetic possibilities for several biosynthetic pathways in one strain that is used for a highly flexible production of secondary metabolites depending on the environment, the OSMAC approach might give more insight into the role of secondary metabolism in the microbial community or during the evolution of life itself.
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  • 74
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    Confocal laser scanning microscopy: using cuticular autofluorescence for high resolution morphological imaging in small crustaceans (2007)
    Wiley
    In:  Journal of Microscopy, 227 (1). pp. 1-7.
    Details
    Publication Date: 2020-07-22
    Description: The utility of cuticular autofluorescence for the visualization of copepod morphology by means of confocal laser scanning microscopy (CLSM) was examined. Resulting maximum intensity projections give very accurate information on morphology and show even diminutive structures such as small setae in detail. Furthermore, CLSM enables recognition of internal structures and differences in material composition. Optical sections in all layers and along all axes of the specimens can be obtained by CLSM. The facile and rapid preparation method bears no risk of artefacts or damage occurring to the preparations and the visualized specimens can be used for later analyses allowing for the investigation of irreplaceable type specimens or parts of them. These features make CLSM a very effective tool for both taxonomical and ecological studies in small crustaceans; however, the maximum thickness of the specimens is limited to a few hundred micrometers. Three-dimensional models based on CLSM image stacks allow observation of the preparations from all angles and can permit, improve and speed up studies on functional morphology. The visualization method described has a strong potential to become a future standard technique in aquatic biology due to its advantages over conventional light microscopy and scanning electron microscopy.
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  • 75
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    Natural Products from Marine Microorganisms (2002)
    Chemistry Europe | Wiley
    In:  ChemBioChem, 3 (11). pp. 1151-1154.
    Details
    Publication Date: 2020-07-27
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  • 76
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    Temporal variation of the microbial community associated with the mediterranean sponge Aplysina aerophoba (2001)
    Wiley
    In:  FEMS Microbiology Ecology, 38 (2-3). pp. 105-115.
    Details
    Publication Date: 2015-08-27
    Description: Sponges of the Aplysinidae family contain large amounts of bacteria that are embedded within the sponge tissue matrix. In order to determine the stability and specificity of the Aplysina–microbe association, sponges were maintained in recirculating seawater aquariums for 11 days. One aquarium was left untreated, a second one contained 0.45 μm filtered seawater (starvation conditions) and the third one contained 0.45 μm filtered seawater plus antibiotics (antibiotics exposure). Changes in the microbial community were monitored using group-specific, 16S rRNA targeted oligonucleotide probes, by denaturing gradient gel electrophoresis and by electron microscopic observations. Furthermore, the changes in the natural product profile were monitored using high-performance liquid chromatography. The measured parameters showed that a large fraction of the sponge-associated microbial community could not be cleared under the given experimental conditions. Based on these cumulative results we postulate that a large fraction of sponge-associated bacteria resides permanently in the Aplysina aerophoba mesohyl pointing to a highly integrated interaction between the host sponge and associated microorganisms.
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  • 77
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    Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola (2001)
    Wiley
    In:  FEMS Microbiology Ecology, 35 (3). pp. 305-312.
    Details
    Publication Date: 2015-08-27
    Description: The aim of this study was to isolate bacteria with antimicrobial activities from the marine sponges Aplysina aerophoba and Aplysina cavernicola. The obtained 27 isolates could be subdivided into eight phylogenetically different clusters based on comparative sequence analysis of their 16S rDNA genes. The sponge isolates were affiliated with the low (Bacillus) and high G+C Gram-positive bacteria (Arthobacter, Micrococcus), as well as the α-Proteobacteria (unknown isolate) and γ-Proteobacteria (Vibrio, Pseudoalteromonas). One novel Bacillus species was identified and two species were closely related to previously uncharacterized strains. Isolates with antimicrobial activity were numerically most abundant in the genera Pseudoalteromonas and the α-Proteobacteria. The sponge isolates show antimicrobial activities against Gram-positive and Gram-negative reference strains but not against the fungus Candida albicans. A general pattern was observed in that Gram-positive bacteria inhibited Gram-positive strains while Gram-negative bacteria inhibited Gram-negative isolates. Antimicrobial activities were also found against clinical isolates, i.e. multi-resistant Staphylococcus aureus and Staphylococcus epidermidis strains isolated from hospital patients. The high recovery of strains with antimicrobial activity suggests that marine sponges represent an ecological niche which harbors a hitherto largely uncharacterized microbial diversity and, concomitantly, a yet untapped metabolic potential.
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  • 78
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    Symbiosis, infection and pathogenicity (2002)
    Wiley
    In:  In: Molecular Infection Biology. , ed. by Hacker, J. and Heesemann, J. Wiley, New York, USA, pp. 53-56. ISBN 978-0-471-17846-0
    Details
    Publication Date: 2015-09-08
    Type: Book chapter , NonPeerReviewed
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  • 79
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    Population genetic analyses of Hypoplectrus coral reef fishes provide evidence that local processes are operating during the early stages of marine adaptive radiations (2008)
    Wiley
    In:  Molecular Ecology, 17 (6). pp. 1405-1415.
    Details
    Publication Date: 2015-09-14
    Description: Large-scale, spatially explicit models of adaptive radiation suggest that the spatial genetic structure within a species sampled early in the evolutionary history of an adaptive radiation might be higher than the genetic differentiation between different species formed during the same radiation over all locations. Here we test this hypothesis with a spatial population genetic analysis of Hypoplectrus coral reef fishes (Serranidae), one of the few potential cases of a recent adaptive radiation documented in the marine realm. Microsatellite analyses of Hypoplectrus puella (barred hamlet) and Hypoplectrus nigricans (black hamlet) from Belize, Panama and Barbados validate the population genetic predictions at the regional scale for H. nigricans despite the potential for high levels of gene flow between populations resulting from the 3-week planktonic larval phase of Hypoplectrus. The results are different for H. puella, which is characterized by significantly lower levels of spatial genetic structure than H. nigricans. An extensive field survey of Hypoplectrus population densities complemented by individual-based simulations shows that the higher abundance and more continuous distribution of H. puella could account for the reduced spatial genetic structure within this species. The genetic and demographic data are also consistent with the hypothesis that H. puella might represent the ancestral form of the Hypoplectrus radiation, and that H. nigricans might have evolved repeatedly from H. puella through ecological speciation. Altogether, spatial genetic analysis within and between Hypoplectrus species indicate that local processes can operate at a regional scale within recent marine adaptive radiations
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  • 80
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    Upper-crustal structure beneath the Strait of Georgia, Southwest British Columbia (2007)
    Wiley
    In:  Geophysical Journal International, 170 (2). pp. 800-812.
    Details
    Publication Date: 2015-11-18
    Description: We present a new three-dimensional (3-D) P-wave velocity model for the upper-crustal structure beneath the Strait of Georgia, southwestern British Columbia based on non-linear tomographic inversion of wide-angle seismic refraction data. Our study, part of the Georgia Basin Geohazards Initiative (GBGI) is primarily aimed at mapping the depth of the Cenozoic sedimentary basin and delineating the near-surface crustal faults associated with recent seismic activities (e.g. M = 4.6 in 1997 and M = 5.0 in 1975) in the region. Joint inversion of first-arrival traveltimes from the 1998 Seismic Hazards Investigation in Puget Sound (SHIPS) and the 2002 Georgia Basin experiment provides a high-resolution velocity model of the subsurface to a depth of ???7 km. In the southcentral Georgia Basin, sedimentary rocks of the Cretaceous Nanaimo Group and early Tertiary rocks have seismic velocities between 3.0 and 5.5 km s-1. The basin thickness increases from north to south with a maximum thickness of 7 (??1) km (depth to velocities of 5.5 km s-1) at the southeast end of the strait. The underlying basement rocks, probably representing the Wrangellia terrane, have velocities of 5.5-6.5 km-1 with considerable lateral variation. Our tomographic model reveals that the Strait of Georgia is underlain by a fault-bounded block within the central Georgia Basin. It also shows a correlation between microearthquakes and areas of rapid change in basin thickness. The 1997/1975 earthquakes are located near a northeast-trending hinge line where the thicknesses of sedimentary rocks increase rapidly to the southeast. Given its association with instrumentally recorded, moderate sized earthquakes, we infer that the hinge region is cored by an active fault that we informally name the Gabriola Island fault. A northwest-trending, southwest dipping velocity discontinuity along the eastern side of Vancouver Island correlates spatially with the surface expression of the Outer Island fault. The Outer Island fault as mapped in our seismic tomography model is a thrust fault that projects directly into the Lummi Island fault, suggesting that they are related structures forming a fault system that is continuous for nearly 90 km. Together, these inferred thrust faults may account for at least a portion of the basement uplift at the San Juan Islands. ?? 2007 The Authors Journal compilation ?? 2007 RAS.
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    Crustal architecture and deep structure of the Ninetyeast Ridge hotspot trail from active-source ocean bottom seismology (2001)
    Wiley
    In:  Geophysical Journal International, 144 (2). pp. 414-431.
    Details
    Publication Date: 2018-01-31
    Description: A 550-km-long transect across the Ninetyeast Ridge, a major Indian ocean hotspot trail, provided seismic refraction and wide-angle reflection data recorded on 60 ocean bottom instruments. About 24 000 crustal and 15 000 upper mantle arrivals have been picked and used to derive an image of the hotspot track. Two approaches have been chosen: (i) a first-arrival tomographic inversion yielding crustal properties; and (ii) forward modelling of mantle phases revealing the structure at the crust–mantle boundary region and of the uppermost mantle. Away from the volcanic edifice, seismic recordings show the typical phases from oceanic crust, that is, two crustal refraction branches (Pg), a wide-angle reflection from the crust–mantle boundary (PmP) and a wave group turning within the upper mantle (Pn). Approaching the edifice, three additional phases have been detected. We interpret these arrivals as a wide-angle reflection from the base of material trapped under the pre-hotspot crust (Pm2P) and as a wide-angle reflection (PnP) and its associated refraction branch (PN) from a layered upper mantle. The resulting models indicate normal oceanic crust to the west and east of the edifice. Crustal thickness averages 6.5–7 km. Wide-angle reflections from both the pre-hotspot and the post-hotspot crust–mantle boundary suggest that the crust under the ridge has been bent downwards by loading the lithosphere, and hotspot volcanism has underplated the pre-existing crust with material characterized by seismic velocities intermediate between those of mafic lower crustal and ultramafic upper mantle rocks (7.5–7.6 km s−1). In total, the crust is up to ≈ 24 km thick. The ratio between the volume of subcrustal plutonism forming the underplate and extrusive and intrusive volcanism forming the edifice is about 0.7. An important observation is that underplating continued to the east under the Wharton Basin. During the shield-building phase, however, Ninetyeast Ridge was located adjacent to the Broken Ridge and was subsequently pulled apart along a transform fault boundary. Therefore, underplating eastwards of the fracture zone separating the edifice from the Wharton Basin suggests that prolonged crustal growth by subcrustal plutonism occurred over millions of years after the major shield-building stage. This fact, however, requires mantle flow along the fossil hotspot trail. The occurrence of PnP and PN arrivals is probably associated with a layered and anisotropic upper mantle due to the preferential alignment of olivine crystals and may have formed by rising plume material which spread away under the base of the lithosphere.
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  • 82
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    Periglacial sediment variations controlled by late Quaternary climate and lake level change at Elgygytgyn Crater, Arctic Siberia (2008)
    Wiley
    In:  Boreas, 37 (1). pp. 55-65.
    Details
    Publication Date: 2015-03-23
    Description: Late Quaternary sediments in a permafrost environment recovered from the Elgygytgyn Impact Crater were studied to determine regional palaeoenvironmental variability and infer past water-level changes of the crater lake. Stratigraphic analysis of a 5 m long permafrost core is based on various lithological (grain size, total organic carbon, magnetic susceptibility) and hydrochemical (oxygen isotope composition, major cation content) properties and pore ice content. The results show that alluvial sediments accumulated on top of cryogenically weathered volcanic rock. Changes in the hydrochemical properties reflect different stages of cryogenic weathering. The lithological characteristics mark the transition from an erosive site to a site with accumulation. This environmental change is linked to a relative lake level highstand at 〉13 000 yr BP, when a shoreline bar was formed leading to slope sedimentation. Lake level dropped by 4 m during the Holocene.
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  • 83
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    Selective enrichment and molecular characterization of a previously uncultured Nitrospira-like bacterium from activated sludge (2006)
    Wiley
    In:  Environmental Microbiology, 8 (3). pp. 405-415.
    Details
    Publication Date: 2016-11-04
    Description: Previously uncultured nitrite-oxidizing bacteria affiliated to the genus Nitrospira have for the first time been successfully enriched from activated sludge from a municipal wastewater treatment plant. During the enrichment procedure, the abundance of the Nitrospira-like bacteria increased to approximately 86% of the total bacterial population. This high degree of purification was achieved by a novel enrichment protocol, which exploits physiological features of Nitrospira-like bacteria and includes the selective repression of coexisting Nitrobacter cells and heterotrophic contaminants by application of ampicillin in a final concentration of 50 µg ml−1. The enrichment process was monitored by electron microscopy, fluorescence in situ hybridization (FISH) with rRNA-targeted probes and fatty acid profiling. Phylogenetic analysis of 16S rRNA gene sequences revealed that the enriched bacteria represent a novel Nitrospira species closely related to uncultured Nitrospira-like bacteria previously found in wastewater treatment plants and nitrifying bioreactors. The enriched strain is provisionally classified as ‘Candidatus Nitrospira defluvii’.
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  • 84
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    Methane fluxes in permafrost habitats of the Lena Delta : effects of microbial community structure and organic matter quality (2005)
    Wiley
    In:  Environmental Microbiology, 7 (10). pp. 1582-1592.
    Details
    Publication Date: 2016-11-04
    Description: For the understanding and assessment of recent and future carbon dynamics of arctic permafrost soils the processes of CH4 production and oxidation, the community structure and the quality of dissolved organic matter (DOM) were studied in two soils of a polygonal tundra. Activities of methanogens and methanotrophs differed significantly in their rates and distribution patterns among the two investigated profiles. Community structure analysis showed similarities between both soils for ester-linked phospholipid fatty acids (PLFAs) and differences in the fraction of unsaponifiable PLFAs and phospholipid ether lipids. Furthermore, a shift of the overall composition of the microbiota with depth at both sites was indicated by an increasing portion of iso- and anteiso-branched fatty acids related to the amount of straight-chain fatty acids. Although permafrost soils represent a large carbon pool, it was shown that the reduced quality of organic matter leads to a substrate limitation of the microbial metabolism. It can be concluded from our and previous findings first that microbial communities in the active layer of an Arctic polygon tundra are composed by members of all three domains of life, with a total biomass comparable to temperate soil ecosystems, and second that these microorganisms are well adapted to the extreme temperature gradient of their environment.
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  • 85
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    Captive breeding of climbing perch Anabas testudineus (Bloch, 1792) with Wova-FH for conservation and aquaculture (2005)
    Wiley
    In:  Aquaculture Research, 36 (10). pp. 941-945.
    Details
    Publication Date: 2015-06-30
    Description: Induced breeding of climbing perch, Anabas testudineus was conducted by synthetic hormone Wova-FH in the intensity level of 0.1, 0.2 and 0.3 mL kg−1 of body weight respectively. The brooders were injected one time and left to spawn in the spawning hapa in the sex ratio between male and female as 2:1. It was found that at all the intensity level hormone Wova-FH could enhance the fishes to breed and lay eggs whereas no breeding was observed in control set. The spawning time, quantity of the brooder spawn, fertilization rate, hatching rate and survival rate were quantified in each set of experiment. The egg output/female was significantly higher in 0.3 mL in comparison with 0.1 and 0.2 mL kg−1 of body weight. The statistical analysis showed significant (P≤0.05) effect between hormone dose on fertilization rate, egg output and hatching rate. The present experiment suggests that Wova-FH at the dose of 0.3 mL kg−1 body weight of fish is more effective which might be considered for raising captive population.
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  • 86
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    Diversity and mode of transmission of ammonia-oxidizing archaea in marine sponges (2008)
    Wiley
    In:  Environmental Microbiology, 10 (4). pp. 1087-1094.
    Details
    Publication Date: 2016-11-04
    Description: The model marine crenarchaeote 'Cenarchaeum symbiosum' is until now the only ammonia-oxidizing archaeon known from a marine sponge. Here, phylogenetic analyses based on the 16S rRNA and ammonia monooxygenase subunit A (amoA) genes revealed the presence of putative ammonia-oxidizing archaea (AOA) in a diverse range of sponges from the western Pacific, Caribbean and Mediterranean. amoA diversity was limited even between different oceans, with many of the obtained sequences (75.9%; n(total) = 83) forming a monophyletic, apparently sponge- (and coral-) specific lineage, analogous to those previously inferred from comparative 16S rRNA gene studies of sponge-associated microbes. The presence of AOA in sponge larvae, as detected by 16S rRNA and amoA PCR assays as well as by fluorescence in situ hybridization, suggests they are vertically transmitted and thus might be of importance for ammonia detoxification within the sponge.
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  • 87
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    Marine sponges as microbial fermenters (2006)
    Wiley
    In:  FEMS Microbiology Ecology, 55 (2). pp. 167-177.
    Details
    Publication Date: 2015-08-07
    Description: The discovery of phylogenetically complex, yet highly sponge-specific microbial communities in marine sponges, including novel lineages and even candidate phyla, came as a surprise. At the same time, unique research opportunities opened up, because the microorganisms of sponges are in many ways more accessible than those of seawater. Accordingly, we consider sponges as microbial fermenters that provide exciting new avenues in marine microbiology and biotechnology. This review covers recent findings regarding diversity, biogeography and population dynamics of sponge-associated microbiota, and the data are discussed within the larger context of the microbiology of the ocean.
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  • 88
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    New microsatellite markers for the snow crab Chionoecetes opilio (Brachyura: Majidae) (2003)
    Wiley
    In:  Molecular Ecology Resources, 3 (4). pp. 644-646.
    Details
    Publication Date: 2020-06-30
    Description: Five microsatellite markers were developed for the snow crab (Chionoecetes opilio) and polymerase chain reaction conditions and/or primer sequences of three previously developed microsatellites were adapted for fluorescent labelling analysis. All loci were analysed in 449 individuals from 11 sampling sites in the northwest Atlantic. The high degree of polymorphism exhibited by these microsatellites (mean of 34 alleles per locus and mean observed heterozygosity of 0.76) suggests that they will be suitable for spatial and temporal genetic analysis of C. opilio populations.
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  • 89
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    Crustal underplating and its implications for subsidence and state of isostasy along the Ninetyeast Ridge hotspot trail (2000)
    Wiley
    In:  Geophysical Journal International, 142 (2). pp. 643-649.
    Details
    Publication Date: 2018-01-31
    Description: Recent seismic field work has revealed high lower-crustal velocities under Ninetyeast Ridge, Indian Ocean, indicating the presence of crustal underplating (Grevemeyer et al. 2000). We used results from Ocean Drilling Program (ODP) drill cores and cross-spectral analysis of gravity and bathymetric data to study the impact of the underplating body on the subsidence history and the mode of isostatic compensation along Ninetyeast Ridge. Compared with the adjacent Indian basin, the subsidence of Ninetyeast Ridge is profoundly anomalous. Within the first few millions of years after crustal emplacement the ridge subsided rapidly. Thereafter, however, subsidence slowed down significantly. The most reliable model of isostasy suggests loading of a thin elastic plate on and beneath the seafloor. Isostatic compensation of subsurface loading occurs at a depth of about 25km, which is in reasonably good agreement with seismic constraints. Subsurface loading is inherently associated with buoyant forces acting on the lithosphere. The low subsidence may therefore be the superposition of cooling of the lithosphere and uplift due to buoyant material added at the base of the crust. A model including prolonged crustal growth in the form of subcrustal plutonism may account for all observations.
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  • 90
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    United Kingdom daily precipitation intensity: improved early data, error estimates and an update from 2000 to 2006 (2008)
    Wiley
    In:  International Journal of Climatology, 28 (6). pp. 833-842.
    Details
    Publication Date: 2020-03-19
    Description: This paper updates the analysis by Osborn et al. of trends in the contribution of heavy events to precipitation in the UK. We spatially extended the previous analysis of 110 rain gauges to a set of 689 rain gauges covering almost the whole UK, and updated the results to November 2006. For each station and season, we calculated ten time series of the contribution of ten precipitation amount categories to the total seasonal precipitation. A principal component analysis of post-1961 trends of all categories and stations is consistent with earlier results, namely, widespread shifts towards greater contribution from heavier precipitation categories during winter, and towards light and moderate categories during summer. Regional and UK average time series of the contribution from the category consisting of the heaviest events indicate that the increased winter intensity was sustained during the most recent ten years, but the trend did not continue at the rate reported previously for 1961–1995. For summer, the decreasing contribution from the heaviest rainfall category reported for 1961–1995 underwent a reversal during the most recent decade, returning towards the 1961–1995 reference level of intensity. Confidence intervals for these regional and UK average time series were estimated by a bootstrap approach and indicate that the sparser observations from the first half of the 20th century are still sufficient to estimate UK average change. These longer records support the existence of a long-term increase in winter precipitation intensity, and similar trends have now also become evident in spring and (to a lesser extent) autumn. The summer rainfall intensity has exhibited changes that are more consistent with inter-decadal variability than any overall trend. Copyright © 2008 Royal Meteorological Society
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  • 91
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    Primary productivity of planet earth: biological determinants and physical constraints in terrestrial and aquatic habitats (2001)
    Wiley
    In:  Global Change Biology, 7 (8). pp. 849-882.
    Details
    Publication Date: 2018-05-16
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  • 92
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    Global warming benefits the small in aquatic ecosystems (2009)
    National Academy of Sciences
    In:  PNAS Proceedings of the National Academy of Sciences of the United States of America, 106 (31). pp. 12788-12793.
    Details
    Publication Date: 2016-11-14
    Description: Understanding the ecological impacts of climate change is a crucial challenge of the twenty-first century. There is a clear lack of general rules regarding the impacts of global warming on biota. Here, we present a metaanalysis of the effect of climate change on body size of ectothermic aquatic organisms (bacteria, phyto- and zooplankton, and fish) from the community to the individual level. Using long-term surveys, experimental data and published results, we show a significant increase in the proportion of small-sized species and young age classes and a decrease in size-at-age. These results are in accordance with the ecological rules dealing with the temperature–size relationships (i.e., Bergmann's rule, James' rule and Temperature–Size Rule). Our study provides evidence that reduced body size is the third universal ecological response to global warming in aquatic systems besides the shift of species ranges toward higher altitudes and latitudes and the seasonal shifts in life cycle events.
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  • 93
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    Control of microbenthic communities by grazing and nutrient supply (2002)
    Wiley
    In:  Ecology, 83 (8). pp. 2205-2219.
    Details
    Publication Date: 2017-02-17
    Description: In periphyton communities, autotrophic algae and prokaryotes live in close spatial proximity to heterotrophic components such as bacteria and micro- and meiofauna. In factorial field experiments, we manipulated grazer access and nutrient supply to periphyton communities and measured the effects on algal, ciliate, meiofaunal, and bacterial biomass. We tested whether grazing macrozoobenthos affects all periphytic components (generalist consumption), whether nutrient effects propagate through the community, and whether interactions between the different periphyton groups allow for indirect feedback mechanisms. The experiments were conducted during three different seasons in a meso-eutrophic lake in Sweden (Lake Erken) and at an adjacent coastal marine site (Väddö) of similar productivity, but with contrasting grazer fauna. We found strong direct effects of nutrients and grazing on algae at both sites. Algal biomass increased in fertilized treatments and was significantly reduced when grazers were present. The algae clearly dominated the system quantitatively and were positively correlated to the biomass of ciliates and meiofauna. The effects of grazing and nutrients were more complex for heterotrophs than for algae. Generally, the presence of grazers tended to increase the biomass of bacteria, ciliates, and meiofauna. Thus, macrograzers were not generalist consumers of the entire community, but mainly reduced algae. Furthermore, the results suggested strong indirect effects of grazing, presumably through changes in nutrient supply and algal size structure. Nutrient enrichment had weak and inconsistent effects on bacterial, ciliate, and meiofaunal biomass. There was thus no complete propagation of bottom-up effects through the community, and strong internal feedback mechanisms within the periphyton mediated the effects of macroconsumers and nutrient enrichment.
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  • 94
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    Magellanic Penguins (Spheniscus magellanicus) commuting through San Julian Bay; Do current trends induce tidal tactics? (2001)
    Wiley
    In:  Journal of Avian Biology, 32 (1). pp. 83-89.
    Details
    Publication Date: 2016-04-25
    Description: The behaviour of Magellanic Penguins Spheniscus magellanicus commuting between their foraging areas and breeding areas in San Julian Bay, Argentina was studied to examine whether tidal rip currents affected travelling patterns. Although there was no apparent relationship between departure and arrival patterns and the state of the tidal cycle, birds travelling against the current dived for longer periods and had shorter rests on the surface than birds travelling with the current. In addition, birds swimming against the current hugged the banks of tidal rivers much more closely than did birds swimming with the current, thus reducing the magnitude of the current against which they had to swim. In cases of extremely high current speeds, birds travelling upstream walked. Models regarding the energetics of movement indicate that the strategies adopted by Magellanic Penguins can result in substantial energy savings.
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  • 95
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    Simple methods to obtain preliminary growth estimates for fishes (2003)
    Wiley
    In:  Journal of Applied Ichthyology, 19 (6). pp. 376-379.
    Details
    Publication Date: 2017-07-03
    Description: Explored were methods to derive preliminary information on growth from other known life history parameters such as maximum size and size and age at first maturity. Use was made of the fact that with asymptotic length known, only one point is needed to determine the general shape of a von Bertalanffy growth curve. An empirical relationship was used to predict asymptotic length from maximum observed length. We used mean size reached at age 1 or 2 or mean age and size at first maturity, as is often provided in the literature, to derive preliminary von Bertalanffy growth curves. Results of this approach were then compared with published growth estimates. We used an empirical relationship to predict length at first maturity from asymptotic length when only the age at first maturity was given in the literature. Temperate fishes usually have restricted spawning periods lasting a few months per year and maturity is typically reached in the first, second, third, or later year, i.e. in steps of 12 months, with larger species maturing later. We used data in FishBase (http://www.fishbase.org) to establish typical ranges for age at first maturity and growth performance of temperate fishes as a function of maximum size. We present an approach that uses this framework to derive preliminary growth estimates for species of which only the maximum size is known.
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  • 96
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    Linking the North Atlantic to Central Europe: A high-resolution Holocene tephrochronological record from Northern Germany (2002)
    Wiley
    In:  Journal of Quaternary Science, 17 (1). pp. 3-20.
    Details
    Publication Date: 2017-07-24
    Description: A high-resolution Holocene tephrochronology for northern Germany has been established based on systematic tephrostratigraphical analysis of three peat bogs. Microscopic volcanic ash layers have been traced and characterised petrographically and by the chemical composition of the glass shards. At least 37 ash horizons representing 16 different explosive volcanic eruptions have been identified and many can be correlated between the three sites, up to 100 km apart. The tephra layers can be related to Icelandic volcanic sources and some correlated to the eruptions of Askja 1875, Hekla 3, Hekla Selsund, Hekla 4 and Hekla 5, as well as to unspecified eruptions of Icelandic volcanic systems, e.g. Torfajökull. The source volcanoes for some tephra layers remain unidentified. Some tephra layers were known previously from the North Atlantic region (e.g. Sluggan, Glen Garry), others have not been recorded previously in the literature (e.g. microlite tephra). This study provides the first comprehensive Holocene tephrostratigraphical record for northern Germany, complementing the North Atlantic tephrostratigraphical dating framework, effectively extending it into central Europe. The study shows that Icelandic ash layers are even more widespread than hitherto thought.
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  • 97
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    Small-scale faulting, topographic steps and seismic risk in the Alhambra (Grenada, SE Spain) (2004)
    Wiley
    In:  Journal of Quaternary Science, 19 (3). pp. 219-227.
    Details
    Publication Date: 2017-07-24
    Description: The Alhambra (14th century AD) in Granada (southeast Spain) is built at the summit of a Pliocene to Lower Pleistocene conglomeratic formation. Tens of small-scale normal faults crop out along the northern hillslope of the Alhambra, which have a N130–N150°E strike, dipping 65–75° mostly to the southwest. These are closely spaced faults (approximately 5–30 m) with centimetre to several metre displacements. Several topographic steps in this area coincide with hectometre- to kilometre-scale faults with the same kinematics as the small-scale ones. Some of these faults appear to be active and related to the present seismicity detected in this region, and associated with the cracks and other damage observed in the Alhambra. Several focal mechanisms calculated in this study are in accordance with the dominant NW–SE orientated normal faults. We interpret that the topographic steps of these faults are a consequence of repeated earthquakes during the past 800 ka. The last large earthquake of approximately 5.1 magnitude in this area occurred in 1431, destroying the Alixares Palace, the Arabian fence and part of the Alhambra wall. We consider the seismic risk associated with these faults to be moderate, as the displacement is partitioned into several hectometre- to kilometre-scale faults.
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  • 98
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    Vertical migration by Rhizosolenia spp. (Bacillariophyceae): Implications for Fe Acquisition (2000)
    Wiley
    In:  Journal of Phycology, 36 . pp. 669-674.
    Details
    Publication Date: 2018-04-26
    Description: Available data support a mechanism of buoyancy‐mediated vertical migration by large‐sized diatoms of Rhizosolenia spp. as a means to access “new” nitrogen from deep waters. To assess whether phytoplankton simultaneously satisfy their Fe requirements by this mechanism, field samples collected during summer 1996 at stations located along a transect through the central North Pacific gyre were assayed for the presence of flavodoxin and ferredoxin via Western blot analysis. All samples, regardless of their buoyancy status and the station from which they were collected, had accumulated flavodoxin but not ferredoxin. To understand better the significance of the field results, cultures of Rhizosolenia formosa H. Peragallo were grown in the laboratory with varying levels of total Fe (200 nM–10,000 nM). Fe had little effect on the physiological and photochemical parameters measured for each treatment. Growth rates did not exceed 0.17 d−1 and values of Fv/Fm ranged from 0.48 to 0.62. In addition, R. formosa accumulated only flavodoxin at each level of Fe addition. From these results, it appears that for some rhizosolenids, flavodoxin is constitutively expressed. The underlying basis for the constitutive nature of this flavodoxin is unclear at present, although it is likely that it is ultimately related to chronic Fe deficit incurred in natural waters.
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  • 99
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    A new shot at a release mechanism for devices attached to free-living animals (2005)
    Wiley
    In:  Wildlife Society Bulletin, 33 (1). pp. 337-342.
    Details
    Publication Date: 2016-05-26
    Description: Detailed studies of the behavior and location of free-ranging animals can be considerably enhanced with the use of animal-mounted devices. A few devices, such as data loggers, have to be recovered to access the data, whereas satellite tags or radiocollars often are left on the animal after the study period. Recovery of devices, which usually necessitates animal recapture, can be problematic, especially in larger species. This paper presents a new, non-electronic release mechanism, requiring no power source on the animal, that was successfully tested on South American sea lions (Otaria flavescens) in Argentina during the 2003–2004 austral summer. The system has potential for many larger terrestrial or aquatic animals.
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  • 100
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    Increasing the sensitivity of delta〈sup〉13〈/sup〉C and delta〈sup〉15〈/sup〉N abundance measurements by a high sensitivity elemental analyzer connected to an isotope ratio mass spectrometer (2007)
    Wiley
    In:  Rapid Communications in Mass Spectrometry, 21 (3). pp. 314-318.
    Details
    Publication Date: 2019-02-27
    Description: A common elemental analyzer system connected to a temperature-controlled gas chromatography (GC) column and coupled to an isotope ratio mass spectrometer was improved to decrease the determination limit for a simultaneous stable isotope ratio measurement of nitrogen and carbon dioxide. The additional use of a special ashtray system to collect the combustion residuals permitted more time-efficient work. These modifications to the elemental analyzer allowed precise measurements to be made down to 1.5 µg nitrogen and 10 µg carbon for stable isotope analysis. Low system background values and an acceptable signal-to-noise ratio have made an additional blank correction for these low sample measurements unnecessary. We provide a precision of this stable isotope analysis for lowest amounts of 1.2–2 µg nitrogen with a standard deviation of ±0.496‰ (n = 27) and for 8.2–15 µg carbon with a standard deviation of ±0.257‰ (n = 31) across different sample runs under stipulated conditions. This application can be established in an automatic mode without cryofocusing procedures.
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