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  • American Meteorological Society (AMS)
  • Annual Reviews
  • Cambridge University Press
  • Nature Publishing Group
  • 2010-2014  (14,728)
  • 2005-2009  (24,476)
  • 1980-1984  (31,337)
Collection
Publisher
Years
Year
  • 1
    Unknown
    Cambridge, U.K ; New York, N.Y : Cambridge University Press
    Keywords: Cellular telephone services industry ; Electronic books ; Mobile communication systems, Economic aspects ; Wireless communication systems, Economic aspects
    Pages: 1 v. (various pagings)
    ISBN: 0-511-11564-4
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  • 2
    Unknown
    Cambridge ; New York : Cambridge University Press
    Keywords: Shakespeare, William, Tragedies ; Electronic books ; Identity (Psychology) in literature ; Tragedy ; Violence in literature
    Pages: ix, 228 p.
    ISBN: 0-511-11352-8
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  • 3
    Unknown
    New York : Cambridge University Press
    Keywords: Capital market ; Electronic books ; Futures market ; Stock exchanges
    Pages: 1 v. (various pagings)
    ISBN: 0-511-11580-6
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  • 4
    Keywords: Developing countries, Economic policy. ; Federal government, Developing countries.
    Pages: xi, 276 p.
    ISBN: 0-511-11566-0
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  • 5
    Unknown
    Cambridge ; New York : Cambridge University Press
    Keywords: Dynamics. ; Kinematics.
    Pages: x, 374 p.
    Edition: 3rd ed
    ISBN: 0-511-11583-0
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  • 6
    Unknown
    Cambridge ; New York : Cambridge University Press
    Keywords: Shakespeare, William, Language ; Shakespeare, William, Romeo and Juliet ; Shakespeare, William, Stage history, 1950- ; Shakespeare, William, Stage history, England, London ; Electronic books ; English language, Pronunciation, Early modern, 1500-1700 ; Globe Theatre (London, England : 1996- )
    Pages: xviii, 188 p.
    ISBN: 0-511-11364-1
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  • 7
    Unknown
    Cambridge, U.K ; New York : Cambridge University Press
    Keywords: Electronic books ; Religion, Study and teaching (Higher) ; Theology, Study and teaching (Higher)
    Pages: xvii, 230 p.
    ISBN: 0-511-11355-2
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  • 8
    Unknown
    Cambridge [England] ; New York : Cambridge University Press
    Keywords: Engineering mathematics, Data processing. ; Numerical analysis, Data processing. ; MATLAB.
    Pages: viii, 426 p.
    ISBN: 0-511-12811-8
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  • 9
    Unknown
    New York : Cambridge University Press
    Keywords: Materials, Mechanical properties.
    Pages: xx, 425 p.
    ISBN: 0-511-11575-X
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  • 10
    Unknown
    Cambridge, UK ; New York : Cambridge University Press
    Keywords: Autonomy (Psychology) ; Electronic books ; Ethics, Modern
    Notes: Planning agency, autonomous agency / Michael E. Bratman -- Autonomy without free will / Bernard Berofsky -- Autonomy and the paradox of self-creation : infinite regresses, finite selves, and the limits of authenticity / Robert Noggle -- Agnostic autonomism revisited / Alfred R. Mele -- Feminist intuitions and the normative substance of autonomy / Paul Benson -- Autonomy and personal integration / Laura Waddell Ekstrom -- Responsibility, applied ethics, and complex autonomy theories / Nomy Arpaly -- Autonomy and free agency / Marina A.L. Oshana -- The relationship between autonomous and morally responsible agency / Michael McKenna -- Alternative possibilities, personal autonomy, and moral responsibility / Ishtiyaque Haji -- Freedom within reason / Susan Wolf -- Procedural autonomy and liberal legitimacy / John Christman -- The concept of autonomy in bioethics : an unwarranted fall from grace / Thomas May -- Who deserves autonomy, and whose autonomy deserves respect? / Tom L. Beauchamp -- Autonomy, diminished life, and the threshold for use / R.G. Frey
    Pages: ix, 350 p.
    ISBN: 0-511-08224-X
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  • 11
    Unknown
    Cambridge, UK ; New York : Cambridge University Press
    Keywords: Kant, Immanuel,, 1724-1804. ; Causation.
    Pages: xi, 451 p.
    ISBN: 0-511-08217-7
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  • 12
    Unknown
    Cambridge, UK ; New York : Cambridge University Press
    Keywords: Monte Carlo method. ; Statistical physics.
    Pages: xv, 432 p.
    Edition: 2nd ed
    ISBN: 0-511-13098-8
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  • 13
    Unknown
    Cambridge ; New York : Cambridge University Press
    Keywords: Equality. ; Minorities. ; Minorities, Civil rights. ; Multiculturalism. ; Social conflict. ; Social groups.
    Pages: xii, 390 p.
    ISBN: 0-511-08065-4
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  • 14
    Unknown
    Cambridge, UK ; New York : Cambridge University Press
    Keywords: Frege, Gottlob,, 1848-1925.
    Notes: Biography -- Function and argument -- Sense and reference -- Frege's Begriffsschrift theory of identity -- Concept and object -- Names and descriptions -- Existence -- Thought, truth value and assertion -- Indirect reference -- Through the quotation marks
    Pages: xix, 226 p.
    ISBN: 0-511-10977-6
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  • 15
    Unknown
    Cambridge : Cambridge University Press
    Keywords: Space time codes.
    Pages: 1 v. (various pagings)
    ISBN: 0-511-11562-8
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  • 16
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    Nature Publishing Group
    In:  EPIC3Nature Geoscience, Nature Publishing Group, 7(5), pp. 376-381, ISSN: 1752-0894
    Publication Date: 2014-07-14
    Description: During the Middle Miocene climate transition about 14 million years ago, the Antarctic ice sheet expanded to near-modern volume. Surprisingly, this ice sheet growth was accompanied by a warming in the surface waters of the Southern Ocean, whereas a slight deep-water temperature increase was delayed by more than 200 thousand years. Here we use a coupled atmosphere–ocean model to assess the relative effects of changes in atmospheric CO2 concentration and ice sheet growth on regional and global temperatures. In the simulations, changes in the wind field associated with the growth of the ice sheet induce changes in ocean circulation, deep-water formation and sea-ice cover that result in sea surface warming and deep-water cooling in large swaths of the Atlantic and Indian ocean sectors of the Southern Ocean. We interpret these changes as the dominant ocean surface response to a 100-thousand-year phase of massive ice growth in Antarctica. A rise in global annual mean temperatures is also seen in response to increased Antarctic ice surface elevation. In contrast, the longer-term surface and deep-water temperature trends are dominated by changes in atmospheric CO2 concentration. We therefore conclude that the climatic and oceanographic impacts of the Miocene expansion of the Antarctic ice sheet are governed by a complex interplay between wind field, ocean circulation and the sea-ice system.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 17
    Publication Date: 2014-07-17
    Description: Thermokarst lakes formed across vast regions of Siberia and Alaska during the last deglaciation and are thought to be a net source of atmospheric methane and carbon dioxide during the Holocene epoch1, 2, 3, 4. However, the same thermokarst lakes can also sequester carbon5, and it remains uncertain whether carbon uptake by thermokarst lakes can offset their greenhouse gas emissions. Here we use field observations of Siberian permafrost exposures, radiocarbon dating and spatial analyses to quantify Holocene carbon stocks and fluxes in lake sediments overlying thawed Pleistocene-aged permafrost. We find that carbon accumulation in deep thermokarst-lake sediments since the last deglaciation is about 1.6 times larger than the mass of Pleistocene-aged permafrost carbon released as greenhouse gases when the lakes first formed. Although methane and carbon dioxide emissions following thaw lead to immediate radiative warming, carbon uptake in peat-rich sediments occurs over millennial timescales. We assess thermokarst-lake carbon feedbacks to climate with an atmospheric perturbation model and find that thermokarst basins switched from a net radiative warming to a net cooling climate effect about 5,000 years ago. High rates of Holocene carbon accumulation in 20 lake sediments (47 ± 10 grams of carbon per square metre per year; mean ± standard error) were driven by thermokarst erosion and deposition of terrestrial organic matter, by nutrient release from thawing permafrost that stimulated lake productivity and by slow decomposition in cold, anoxic lake bottoms. When lakes eventually drained, permafrost formation rapidly sequestered sediment carbon. Our estimate of about 160 petagrams of Holocene organic carbon in deep lake basins of Siberia and Alaska increases the circumpolar peat carbon pool estimate for permafrost regions by over 50 per cent (ref. 6). The carbon in perennially frozen drained lake sediments may become vulnerable to mineralization as permafrost disappears7, 8, 9, potentially negating the climate stabilization provided by thermokarst lakes during the late Holocene.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
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  • 18
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    Nature Publishing Group
    In:  EPIC3Nature, Nature Publishing Group, 512(7514), pp. 290-294, ISSN: 0028-0836
    Publication Date: 2014-09-04
    Description: During glacial periods of the Late Pleistocene, an abundance of proxy data demonstrates the existence of large and repeated millennial-scale warming episodes, known as Dansgaard–Oeschger (DO) events1. This ubiquitous feature of rapid glacial climate change can be extended back as far as 800,000 years before present (BP) in the ice core record2, and has drawn broad attention within the science and policy-making communities alike3. Many studies have been dedicated to investigating the underlying causes of these changes, but no coherent mechanism has yet been identified3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15. Here we show, by using a comprehensive fully coupled model16, that gradual changes in the height of the Northern Hemisphere ice sheets (NHISs) can alter the coupled atmosphere–ocean system and cause rapid glacial climate shifts closely resembling DO events. The simulated global climate responses—including abrupt warming in the North Atlantic, a northward shift of the tropical rainbelts, and Southern Hemisphere cooling related to the bipolar seesaw—are generally consistent with empirical evidence1, 3, 17. As a result of the coexistence of two glacial ocean circulation states at intermediate heights of the ice sheets, minor changes in the height of the NHISs and the amount of atmospheric CO2 can trigger the rapid climate transitions via a local positive atmosphere–ocean–sea-ice feedback in the North Atlantic. Our results, although based on a single model, thus provide a coherent concept for understanding the recorded millennial-scale variability and abrupt climate changes in the coupled atmosphere–ocean system, as well as their linkages to the volume of the intermediate ice sheets during glacials.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 19
    Publication Date: 2019-03-08
    Description: Coccolithophores have influenced the global climate for over 200 million years1. These marine phytoplankton can account for 20 per cent of total carbon fixation in some systems2. They form blooms that can occupy hundreds of thousands of square kilometres and are distinguished by their elegantly sculpted calcium carbonate exoskeletons (coccoliths), rendering themvisible fromspace3.Although coccolithophores export carbon in the form of organic matter and calcite to the sea floor, they also release CO2 in the calcification process. Hence, they have a complex influence on the carbon cycle, driving either CO2 production or uptake, sequestration and export to the deep ocean4. Here we report the first haptophyte reference genome, from the coccolithophore Emiliania huxleyi strain CCMP1516, and sequences from 13 additional isolates. Our analyses reveal a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome. Comparisons across strains demonstrate thatE. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires. Genome variability within this species complex seems to underpin its capacity both to thrive in habitats ranging from the equator to the subarctic and to form large-scale episodic blooms under a wide variety of environmental conditions.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 20
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    Cambridge University Press
    In:  EPIC3Antarctic Science, Cambridge University Press, 26(6), pp. 625-635, ISSN: 0954-1020
    Publication Date: 2014-11-27
    Description: A common precursor to ice shelf disintegration, most notably that of Larsen B Ice Shelf, is unusually intense or prolonged surface melt and the presence of surface standing water. However, there has been little research into detailed patterns of melt on ice shelves or the nature of summer melt ponds. We investigated surface melt on Larsen C Ice Shelf at high resolution using Envisat advanced synthetic aperture radar (ASAR) data and explored melt ponds in a range of satellite images. The improved spatial resolution of SAR over alternative approaches revealed anomalously long melt duration in western inlets. Meteorological modelling explained this pattern by föhn winds which were common in this region.Melt ponds are difficult to detect using optical imagery because cloud-free conditions are rare in this region and ponds quickly freeze over, but can be monitored using SAR in all weather conditions. Melt ponds up to tens of kilometres in length were common in Cabinet Inlet, where melt duration was most prolonged. The pattern of melt explains the previously observed distribution of ice shelf densification, which in parts had reached levels that preceded the collapse of Larsen B Ice Shelf,suggesting a potential role for föhn winds in promoting unstable conditions on ice shelves.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 21
    Publication Date: 2017-04-04
    Description: Twenty eruptive events from the Northeast Crater of Stromboli volcano recorded by a thermal monitoring camera in early 2004 were analysed in order to understand the eruptive dynamics. Selected eventswere chosen to be typical of explosions that characterize the steady activity of Stromboli in terms of jet height and duration. Most of the explosions consisted of clast-rich single bursts, originating from the same vent inside the Northeast Crater. Conspicuous ash emission was scarce. Eruptions were preceded by the flashing of a perturbation wave characterized by low temperatures and an average propagation velocity of about 35–100 m s−1. This perturbation was thought to be caused by the bursting of the gas slug at the bottom of the crater and is interpreted as an air wave. This was immediately followed by the expansion of a jet of ‘hot’ gas and particles, at a velocity of 35–75 m s−1. Ejecta coarser than 138 cm appeared ∼1.6–2 s after the onset of the explosion, moving at a variable velocity (30–60 m s−1). Eruptive events were either vertical or inclined 7–13◦ towards the NNW. This inclination is thought to be a consequence either of the morphology of the conduit, following modest rock falls that partially obstructed the uppermost part of the crater, or of the displacement of the internal conduit due to the explosive activity of the volcano. The instability of the summit area is a further possible cause of the deformation of the conduit.
    Description: This work was partially funded by the Istituto Nazionale di Geofisica e Vulcanologia and the Dipartimento della Protezione Civile, Italy, project INGVDPC V2
    Description: Published
    Description: 591–601
    Description: 1.5. TTC - Sorveglianza dell'attività eruttiva dei vulcani
    Description: 1.10. TTC - Telerilevamento
    Description: 3.6. Fisica del vulcanismo
    Description: JCR Journal
    Description: reserved
    Keywords: explosive dynamic ; thermal video monitoring ; volcano-tectonic structures ; volcano collapses ; Stromboli ; 04. Solid Earth::04.04. Geology::04.04.99. General or miscellaneous ; 04. Solid Earth::04.04. Geology::04.04.11. Instruments and techniques ; 04. Solid Earth::04.07. Tectonophysics::04.07.99. General or miscellaneous ; 04. Solid Earth::04.07. Tectonophysics::04.07.05. Stress ; 04. Solid Earth::04.07. Tectonophysics::04.07.07. Tectonics ; 04. Solid Earth::04.07. Tectonophysics::04.07.08. Volcanic arcs ; 04. Solid Earth::04.08. Volcanology::04.08.99. General or miscellaneous ; 04. Solid Earth::04.08. Volcanology::04.08.01. Gases ; 04. Solid Earth::04.08. Volcanology::04.08.02. Experimental volcanism ; 04. Solid Earth::04.08. Volcanology::04.08.03. Magmas ; 04. Solid Earth::04.08. Volcanology::04.08.04. Thermodynamics ; 04. Solid Earth::04.08. Volcanology::04.08.06. Volcano monitoring ; 04. Solid Earth::04.08. Volcanology::04.08.07. Instruments and techniques ; 04. Solid Earth::04.08. Volcanology::04.08.08. Volcanic risk ; 05. General::05.02. Data dissemination::05.02.99. General or miscellaneous ; 05. General::05.02. Data dissemination::05.02.03. Volcanic eruptions ; 05. General::05.08. Risk::05.08.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 22
    Publication Date: 2012-02-03
    Description: This handbook defines the discipline of historical seismology by comprehensively detailing the latest research methodologies for studying historical earthquakes and tsunamis. It describes the many historical sources that contain references to seismic phenomena, discusses the critical problems of interpreting such sources, and presents a summary of the various theories proposed (from ancient Greek to modern times) to explain the causes of earthquakes – indispensable factors for understanding historical earthquake descriptions. The text presents numerous examples of interpretations and misinterpretations of historical earthquakes and tsunamis in order to illustrate the key techniques, with a chapter devoted to an explanation of the date and time systems used throughout history in Mediterranean Europe and the Near East. The authors also tie historical seismology research to archaeological investigations and demonstrate how new scientific databases and catalogues can be compiled from information derived from the methodologies described. This is an important new reference for scientists, engineers, historians and archaeologists on the methodologies for analysing earthquakes and tsunamis of the past. Illustrated with examples from a broad geographic region (including Europe, North Africa, the Middle East, central Asia and the Americas), the book provides a valuable foundation for understanding the Earth’s seismic past and potential future seismic hazard.
    Description: Published
    Description: 3.10. Storia ed archeologia applicate alle Scienze della Terra
    Description: open
    Keywords: Historical earthquakes ; historical tsunamis ; historical seismology ; archaeoseismology ; earthquake catalogues ; databases ; 04. Solid Earth::04.06. Seismology::04.06.05. Historical seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book
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  • 23
    Publication Date: 2017-04-04
    Description: The MW 8.8 mega-thrust earthquake and tsunami that occurred on February 27, 2010, offshore Maule region, Chile, was not unexpected. A clearly identified seismic gap existed in an area where tectonic loading has been accumulating since the great 1835 earthquake experienced and described by Darwin during the voyage of the Beagle. Here we jointly invert tsunami and geodetic data (InSAR, GPS, land-level changes), to derive a robust model for the co-seismic slip distribution and induced co-seismic stress changes, and compare them to past earthquakes and the pre-seismic locking distribution. We aim to assess if the Maule earthquake has filled the Darwin gap, decreasing the probability of a future shock . We find that the main slip patch is located to the north of the gap, overlapping the rupture zone of the MW 8.0 1928 earthquake, and that a secondary concentration of slip occurred to the south; the Darwin gap was only partially filled and a zone of high pre-seismic locking remains unbroken. This observation is not consistent with the assumption that distributions of seismic rupture might be correlated with pre-seismic locking, potentially allowing the anticipation of slip distributions in seismic gaps. Moreover, increased stress on this unbroken patch might have increased the probability of another major to great earthquake there in the near future.
    Description: Published
    Description: 173-177
    Description: 3.1. Fisica dei terremoti
    Description: 4.2. TTC - Modelli per la stima della pericolosità sismica a scala nazionale
    Description: JCR Journal
    Description: restricted
    Keywords: Source process ; Chile ; Tsunami ; Joint Inversion ; Seismic Gap ; 04. Solid Earth::04.06. Seismology::04.06.99. General or miscellaneous ; 04. Solid Earth::04.07. Tectonophysics::04.07.05. Stress ; 04. Solid Earth::04.07. Tectonophysics::04.07.06. Subduction related processes ; 05. General::05.01. Computational geophysics::05.01.03. Inverse methods
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 24
    Publication Date: 2017-04-04
    Description: Studies of past sea-level markers are commonly used to unveil the tectonic history and seismic behavior of subduction zones. We present new evidence on vertical motions of the Hellenic subduction zone as resulting from a suite of Late Pleistocene - Holocene shorelines in western Crete (Greece). Shoreline ages obtained by AMS radiocarbon dating of seashells, together with the reappraisal of shoreline ages from previous works, testify a long-term uplift rate of 2.5-2.7 mm/y. This average value, however, includes periods in which the vertical motions vary significantly: 2.6-3.2 mm/y subsidence rate from 42 ka to 23 ka, followed by ~7.7 mm/y sustained uplift rate from 23 ka to present. The last ~5 ky shows a relatively slower uplift rate of 3.0-3.3 mm/y, yet slightly higher than the long-term average. A preliminary tectonic model attempts at explaining these up and down motions by across-strike partitioning of fault activity in the subduction zone.
    Description: Published
    Description: 5677
    Description: 2T. Tettonica attiva
    Description: JCR Journal
    Description: restricted
    Keywords: coastal geomorphology ; tectonic rates ; paleoshorelines ; subduction ; Crete ; 04. Solid Earth::04.04. Geology::04.04.03. Geomorphology ; 04. Solid Earth::04.07. Tectonophysics::04.07.07. Tectonics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 25
    Publication Date: 2017-04-04
    Description: An integrated bio-, magneto- and cyclostratigraphic study of the Ypresian/Lutetian (Early/Middle Eocene) transition along the Otsakar section resulted in the identification of the C22n/C21r chron boundary and of the calcareous nannofossil CP12a/b zonal boundary; the latter is the main correlation criterion of the Lutetian Global Stratotype Section and Point (GSSP) recently defined at Gorrondatxe (Basque Country). By counting precession-related mudstone–marl couplets of 21 ka, the time lapse between both events was calculated to be 819 ka. This suggests that the age of the CP12a/b boundary, and hence that of the Early/Middle Eocene boundary, is 47.76 Ma, 250 ka younger than previously thought. This age agrees with, and is supported by, estimates from Gorrondatxe based on the time lapse between the Lutetian GSSP and the C21r/C21n boundary. The duration of Chron C21r is estimated at 1.326 Ma. Given that the base of the Eocene is dated at 55.8 Ma, the duration of the Early Eocene is 8 Ma, 0.8 Ma longer than in current time scales. The Otsakar results further show that the bases of planktonic foraminiferal zones E8 and P10 are younger than the CP12a/b boundary. The first occurrence of Turborotalia frontosa, being approximately 550 ka older that the CP12a/b boundary, is the planktonic foraminiferal event that lies closest to the Early/Middle Eocene boundary. The larger foraminiferal SBZ12/13 boundary is located close to the CP12a/b boundary and correlates with Chron C21r, not with the C22n/C21r boundary.
    Description: In press
    Description: 1-19
    Description: 2.2. Laboratorio di paleomagnetismo
    Description: JCR Journal
    Description: restricted
    Keywords: Eocene ; Ypresian–Lutetian boundary ; biostratigraphy ; magnetostratigraphy ; cyclostratigraphy ; 04. Solid Earth::04.04. Geology::04.04.08. Sediments: dating, processes, transport ; 04. Solid Earth::04.04. Geology::04.04.10. Stratigraphy ; 04. Solid Earth::04.05. Geomagnetism::04.05.06. Paleomagnetism
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 26
    Publication Date: 2017-04-03
    Description: An integrated bio-, magneto- and cyclostratigraphic study of the Ypresian/Lutetian (Early/Middle Eocene) transition along the Otsakar section resulted in the identification of the C22n/C21r chron boundary and of the calcareous nannofossil CP12a/b zonal boundary; the latter is the main correlation criterion of the Lutetian Global Stratotype Section and Point (GSSP) recently defined at Gorrondatxe (Basque Country). By counting precession-related mudstone–marl couplets of 21 ka, the time lapse between both events was calculated to be 819 ka. This suggests that the age of the CP12a/b boundary, and hence that of the Early/Middle Eocene boundary, is 47.76 Ma, 250 ka younger than previously thought. This age agrees with, and is supported by, estimates from Gorrondatxe based on the time lapse between the Lutetian GSSP and the C21r/C21n boundary. The duration of Chron C21r is estimated at 1.326 Ma. Given that the base of the Eocene is dated at 55.8 Ma, the duration of the Early Eocene is 8 Ma, 0.8 Ma longer than in current time scales. The Otsakar results further show that the bases of planktonic foraminiferal zones E8 and P10 are younger than the CP12a/b boundary. The first occurrence of Turborotalia frontosa, being approximately 550 ka older that the CP12a/b boundary, is the planktonic foraminiferal event that lies closest to the Early/Middle Eocene boundary. The larger foraminiferal SBZ12/13 boundary is located close to the CP12a/b boundary and correlates with Chron C21r, not with the C22n/C21r boundary.
    Description: Published
    Description: 442-460
    Description: 2.2. Laboratorio di paleomagnetismo
    Description: JCR Journal
    Description: restricted
    Keywords: Eocene ; Ypresian–Lutetian boundary ; biostratigraphy ; magnetostratigraphy ; cyclostratigraphy. ; 04. Solid Earth::04.04. Geology::04.04.08. Sediments: dating, processes, transport ; 04. Solid Earth::04.04. Geology::04.04.10. Stratigraphy ; 04. Solid Earth::04.05. Geomagnetism::04.05.06. Paleomagnetism
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 27
    Publication Date: 2017-04-04
    Description: The 2011 Tohoku-oki (Mw 9.1) earthquake is so far the best-observed megathrust rupture, which allowed the collection of unprecedented offshore data. The joint inversion of tsunami waveforms (DART buoys, bottom pressure sensors, coastal wave gauges, and GPS-buoys) and static geodetic data (onshore GPS, seafloor displacements obtained by a GPS/acoustic combination technique), allows us to retrieve the slip distribution on a non-planar fault. We show that the inclusion of near-source data is necessary to image the details of slip pattern (maximum slip ,48 m, up to ,35 m close to the Japan trench), which generated the large and shallow seafloor coseismic deformations and the devastating inundation of the Japanese coast. We investigate the relation between the spatial distribution of previously inferred interseismic coupling and coseismic slip and we highlight the importance of seafloor geodetic measurements to constrain the interseismic coupling, which is one of the key-elements for long-term earthquake and tsunami hazard assessment.
    Description: Published
    Description: 385
    Description: 3.1. Fisica dei terremoti
    Description: N/A or not JCR
    Description: restricted
    Keywords: Tohoku ; Subduction ; Tsunami ; Inverse problem ; 04. Solid Earth::04.06. Seismology::04.06.03. Earthquake source and dynamics ; 04. Solid Earth::04.07. Tectonophysics::04.07.06. Subduction related processes
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 28
    Publication Date: 2017-04-04
    Description: Improving lava flow hazard assessment is one of the most important and challenging fields of volcanology, and has an immediate and practical impact on society. Here, we present a methodology for the quantitative assessment of lava flow hazards based on a combination of field data, numerical simulations and probability analyses. With the extensive data available on historic eruptions of Mt. Etna, going back over 2000 years, it has been possible to construct two hazard maps, one for flank and the other for summit eruptions, allowing a quantitative analysis of the most likely future courses of lava flows. The effective use of hazard maps of Etna may help in minimizing the damage from volcanic eruptions through correct land use in densely urbanized area with a population of almost one million people. Although this study was conducted on Mt. Etna, the approach used is designed to be applicable to other volcanic areas.
    Description: This work was developed within the framework of TecnoLab, the Laboratory for Technological Advance in Volcano Geophysics organized by INGV-CT, DIEES-UNICT, and DMI-UNICT.
    Description: Published
    Description: 3493
    Description: 1V. Storia e struttura dei sistemi vulcanici
    Description: 2V. Dinamiche di unrest e scenari pre-eruttivi
    Description: 3V. Dinamiche e scenari eruttivi
    Description: 4V. Vulcani e ambiente
    Description: 6A. Monitoraggio ambientale, sicurezza e territorio
    Description: 3IT. Calcolo scientifico e sistemi informatici
    Description: JCR Journal
    Description: restricted
    Keywords: Lava flow hazard ; Etna ; 04. Solid Earth::04.04. Geology::04.04.99. General or miscellaneous ; 04. Solid Earth::04.08. Volcanology::04.08.99. General or miscellaneous ; 05. General::05.01. Computational geophysics::05.01.99. General or miscellaneous ; 05. General::05.02. Data dissemination::05.02.99. General or miscellaneous ; 05. General::05.08. Risk::05.08.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 29
    Publication Date: 2017-04-04
    Description: In recent decades, geophysical investigations have detected wide magma reservoirs beneath quiescent calderas. However, the discovery of partially melted horizons inside the crust is not sufficient to put constraints on capability of reservoirs to supply cataclysmic eruptions, which strictly depends on the chemical-physical properties of magmas (composition, viscosity, gas content etc.), and thus on their differentiation histories. In this study, by using geochemical, isotopic and textural records of rocks erupted from the high-risk Campi Flegrei caldera, we show that the alkaline magmas have evolved toward a critical state of explosive behaviour over a time span shorter than the repose time of most volcanic systems and that these magmas have risen rapidly toward the surface. Moreover, similar results on the depth and timescale of magma storage were previously obtained for the neighbouring Somma-Vesuvius volcano. This consistency suggests that there might be a unique long-lived magma pool beneath the whole Neapolitan area.
    Description: Published
    Description: article 712
    Description: 2.3. TTC - Laboratori di chimica e fisica delle rocce
    Description: 3.5. Geologia e storia dei vulcani ed evoluzione dei magmi
    Description: 3.6. Fisica del vulcanismo
    Description: 4.3. TTC - Scenari di pericolosità vulcanica
    Description: N/A or not JCR
    Description: open
    Keywords: magma ; campi flegrei caldera ; 04. Solid Earth::04.04. Geology::04.04.05. Mineralogy and petrology ; 04. Solid Earth::04.08. Volcanology::04.08.03. Magmas ; 04. Solid Earth::04.08. Volcanology::04.08.05. Volcanic rocks ; 04. Solid Earth::04.08. Volcanology::04.08.08. Volcanic risk
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  • 30
    Publication Date: 2017-04-04
    Description: Stratigraphic, structural, palaeocurrent and palaeomagnetic analyses of Upper Albian deep-water deposits in and around the Deba block (Northern Iberia) are presented. Results indicate an anticlockwise vertical-axis rotation of this block by 35◦ during a maximum time span of c. 1 Ma (Late Albian intra-C. auritus ammonite Subzone). This Albian syndepositional block rotation is interpreted to be the consequence of the coeval activity of conjugatemajor sinistral strike-slip faults and minor (antithetic) dextral strike-slip faults, which border the Deba block. On the base of conservative estimations, a minimum block-rotation rate of 35◦ Ma−1 and a sinistral strike-slip rate of 1.2 kmMa−1 are calculated. As a consequence of the interaction of the rotated Deba block with adjacent nonrotated blocks, its corners experienced coeval transpressive (NW and SE corners) and transtensional deformations (SW and, possibly, NE corners). At the transtensional SW corner, two domal highreflective seismic structures have been recorded and interpreted as high-level magmatic laccoliths. These magmatic intrusions triggered the development of a mineralizing hydrothermal system, which vented to the Late Albian seafloor warm to hot hydrocarbon-rich fluids. Vented hydrocarbon was generated from Albian organic-rich sediments by contact alteration with hydrothermal fluids.
    Description: Published
    Description: 986-1001
    Description: 2.2. Laboratorio di paleomagnetismo
    Description: JCR Journal
    Description: restricted
    Keywords: block rotation ; palaeocurrent ; palaeomagnetism ; Albian ; Basque–Cantabrian Basin ; 04. Solid Earth::04.04. Geology::04.04.09. Structural geology ; 04. Solid Earth::04.05. Geomagnetism::04.05.06. Paleomagnetism ; 04. Solid Earth::04.07. Tectonophysics::04.07.07. Tectonics ; 04. Solid Earth::04.08. Volcanology::04.08.03. Magmas
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  • 31
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    Cambridge University Press
    In:  EPIC3Climate Change 2014: Impacts, Adaptation, and Vulnerability. Part A: Global and Sectoral Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel of Climate Change, Cambridge, United Kingdom and New York, NY, USA, Cambridge University Press, pp. 149-151, ISBN: 9781107641655
    Publication Date: 2015-03-08
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  • 32
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    Cambridge University Press
    In:  EPIC3Climate Change 2014: Impacts, Adaptation, and Vulnerability. Part A: Global and Sectoral Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge, United Kingdom and New York, NY, USA, Cambridge University Press, pp. 109-111, ISBN: 9781107641655
    Publication Date: 2015-03-08
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  • 33
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    Cambridge University Press
    In:  EPIC3Climate Change 2014: Impacts, Adaptation, and Vulnerability. Part A: Global and Sectoral Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel of Climate Change, Cambridge, United Kingdom and New York, NY, USA, Cambridge University Press, pp. 97-100, ISBN: 9781107641655
    Publication Date: 2015-03-08
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  • 34
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    Cambridge University Press
    In:  EPIC3Climate Change 2014: Impacts, Adaptation, and Vulnerability. Part A: Global and Sectoral Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel of Climate Change, Cambridge, United Kingdom and New York, NY, USA, Cambridge University Press, pp. 129-131, ISBN: 9781107641655
    Publication Date: 2015-03-08
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  • 35
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    Cambridge University Press
    In:  EPIC3Climate Change 2014: Impacts, Adaptation, and Vulnerability. Part A: Global and Sectoral Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel of Climate Change, Cambridge, United Kingdom and New York, NY, USA, Cambridge University Press, pp. 133-136, ISBN: 9781107641655
    Publication Date: 2015-03-08
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  • 36
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    Cambridge University Press
    In:  EPIC3Climate Change 2014: Impacts, Adaptation, and Vulnerability. Part A: Global and Sectoral Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge, United Kingdom and New York, NY, USA, Cambridge University Press, pp. 411-484, ISBN: 9781107641655
    Publication Date: 2017-01-13
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  • 37
    Publication Date: 2019-07-17
    Description: The mid-Piacenzian climate represents the most geologically recent interval of long-term average warmth relative to the last million years, and shares similarities with the climate projected for the end of the 21st century. As such, it represents a natural experiment from which we can gain insight into potential climate change impacts, enabling more informed policy decisions for mitigation and adaptation. Here, we present the first systematic comparison of Pliocene sea surface temperature (SST) between an ensemble of eight climate model simulations produced as part of PlioMIP (Pliocene Model Intercomparison Project) with the PRISM (Pliocene Research, Interpretation and Synoptic Mapping) Project mean annual SST field. Our results highlight key regional and dynamic situations where there is discord between the palaeoenvironmental reconstruction and the climate model simulations. These differences have led to improved strategies for both experimental design and temporal refinement of the palaeoenvironmental reconstruction.
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  • 38
    Publication Date: 2019-07-17
    Description: Comparing simulations of key warm periods in Earth history with contemporaneous geological proxy data is a useful approach for evaluating the ability of climate models to simulate warm, high-CO2 climates that are unprecedented in the more recent past. Here we use a global data set of confidence-assessed, proxy-based temperature estimates and biome reconstructions to assess the ability of eight models to simulate warm terrestrial climates of the Pliocene epoch. The Late Pliocene, 3.6–2.6 million years ago, is an accessible geological interval to understand climate processes of a warmer world. We show that model-predicted surface air temperatures reveal a substantial cold bias in the Northern Hemisphere. Particularly strong data–model mismatches in mean annual temperatures (up to 18 °C) exist in northern Russia. Our model sensitivity tests identify insufficient temporal constraints hampering the accurate configuration of model boundary conditions as an important factor impacting on data–model discrepancies. We conclude that to allow a more robust evaluation of the ability of present climate models to predict warm climates, future Pliocene data–model comparison studies should focus on orbitally defined time slices.
    Repository Name: EPIC Alfred Wegener Institut
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  • 39
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    Cambridge University Press
    In:  EPIC3Antarctic Science, Cambridge University Press, 26(1), pp. 80-92, ISSN: 0954-1020
    Publication Date: 2019-07-17
    Description: Understanding the regional and seasonal distribution of seismic research surveys in the Southern Ocean is essential for assessing their acoustic impact on the marine environment. An analysis of the navigation data and cruise table in the Seismic Data Library System for Cooperative Research (SDLS) shows that a fairly extensive network of seismic lines is now available for the Southern Ocean. However, line spacing ranges from tens to hundreds of kilometres, and some almost unsurveyed areas still exist. The seasonal distribution of the seismic profile lengths shows periods with increased survey activity between 1976/77 and 2001/02, but only moderate levels of activity between 2002/03 and 2010/11. The corresponding line spacing is large, and lines are widely distributed over the Southern Ocean. None of the eight Antarctic regions considered here have experienced seismic survey activity during all summer seasons in the last 35 years. Instead, periods with survey activity are interspersed by periods with no survey activity. The average survey length ranges from ~2600 km/season off the Antarctic Peninsula to ~260 km/season off Enderby Land. Compared to the industrial seismic exploration off Norway the acoustic impact of the seismic research activity in the Southern Ocean is at least ~150 times lower.
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  • 40
    Publication Date: 2017-10-18
    Description: Efforts to extract a Greenland ice core with a complete record of the Eemian interglacial (130,000 to 115,000 years ago) have until now been unsuccessful. The response of the Greenland ice sheet to the warmer-than-present climate of the Eemian has thus remained unclear. Here we present the new North Greenland Eemian Ice Drilling (‘NEEM’) ice core and show only a modest ice-sheet response to the strong warming in the early Eemian. We reconstructed the Eemian record from folded ice using globally homogeneous parameters known from dated Greenland and Antarctic ice-core records. On the basis of water stable isotopes, NEEM surface temperatures after the onset of the Eemian (126,000 years ago) peaked at 8 ± 4 degrees Celsius above the mean of the past millennium, followed by a gradual cooling that was probably driven by the decreasing summer insolation. Between 128,000 and 122,000 years ago, the thickness of the northwest Greenland ice sheet decreased by 400 ± 250 metres, reaching surface elevations 122,000 years ago of 130 ± 300 metres lower than the present. Extensive surface melt occurred at the NEEM site during the Eemian, a phenomenon witnessed when melt layers formed again at NEEM during the exceptional heat of July 2012. With additional warming, surface melt might become more common in the future.
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  • 41
    Publication Date: 2019-07-17
    Description: The public health, tourism, fisheries, and ecosystem impacts from harmful algal blooms (HABs) have all increased over the past few decades. This has led to heightened scientific and regulatory attention, and the development of many new technologies and approaches for research and management. This, in turn, is leading to significant paradigm shifts with regard to, e.g.,our interpretation of the phytoplankton species concept (strain variation), the dogma of their apparent cosmopolitanism, the role of bacteria and zooplankton grazing in HABs, and our approaches to investigating the ecological and genetic basis for the production of toxins and allelochemicals. Increasingly,eutrophication and climate change are viewed andmanaged as multifactorial environmental stressors that will further challenge managers of coastal resources and those responsible for protecting human health. Here we review HABscience with an eye toward new concepts and approaches,emphasizing, where possible, the unexpected yet promising new directions that research has taken in this diverse field.
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  • 42
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    Nature Publishing Group
    In:  EPIC3Nature Geoscience, Nature Publishing Group, 7(2), pp. 113-116, ISSN: 1752-0894
    Publication Date: 2018-08-10
    Description: The Antarctic Circumpolar Current is key to the mixing and ventilation of the world’s oceans1, 2, 3, 4, 5. This current flows from west to east between about 45° and 70° S (refs 1, 2, 3) connecting the Atlantic, Pacific and Indian oceans, and is driven by westerly winds and buoyancy forcing. High levels of productivity in the current regulate atmospheric CO2 concentrations6. Reconstructions of the current during the last glacial period suggest that flow speeds were faster7 or similar8 to present, and it is uncertain whether the strength and position of the westerly winds changed9, 10, 11. Here we reconstruct Antarctic Circumpolar Current bottom speeds through the constricting Drake Passage and Scotia Sea during the Last Glacial Maximum and Holocene based on the mean grain size of sortable silt from a suite of sediment cores. We find essentially no change in bottom flow speeds through the region, and, given that the momentum imparted by winds, and modulated by sea-ice cover, is balanced by the interaction of these flows with the seabed, this argues against substantial changes in wind stress. However, glacial flow speeds in the sea-ice zone12 south of 56° S were significantly slower than present, whereas flow in the north was faster, but not significantly so. We suggest that slower flow over the rough topography south of 56° S may have reduced diapycnal mixing in this region during the last glacial period, possibly reducing the diapycnal contribution to the Southern Ocean overturning circulation.
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  • 43
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    Nature Publishing Group
    In:  EPIC3Scientific Reports, Nature Publishing Group, 4(4119), ISSN: 2045-2322
    Publication Date: 2019-07-17
    Description: Complex network approaches have recently been applied to continuous spatial dynamical systems, like climate, successfully uncovering the system's interaction structure. However the relationship between the underlying atmospheric or oceanic flow's dynamics and the estimated network measures have remained largely unclear. We bridge this crucial gap in a bottom-up approach and define a continuous analytical analogue of Pearson correlation networks for advection-diffusion dynamics on a background flow. Analysing complex networks of prototypical flows and from time series data of the equatorial Pacific, we find that our analytical model reproduces the most salient features of these networks and thus provides a general foundation of climate networks. The relationships we obtain between velocity field and network measures show that line-like structures of high betweenness mark transition zones in the flow rather than, as previously thought, the propagation of dynamical information.
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  • 44
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    Cambridge University Press
    In:  EPIC3Climate Change 2014: Impacts, Adaptation, and Vulnerability. Part A: Global and Sectoral Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge, United Kingdom and New York, NY, USA, Cambridge University Press, pp. 123-127, ISBN: 9781107641655
    Publication Date: 2015-03-08
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  • 45
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    Cambridge University Press
    In:  EPIC3Climate Change 2014: Impacts, Adaptation, and Vulnerability. Part A: Global and Sectoral Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge, United Kingdom and New York, NY, USA, Cambridge University Press, pp. 1-32, ISBN: 9781107641655
    Publication Date: 2015-03-08
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  • 46
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    Cambridge University Press
    In:  EPIC3Climate Change 2014: Impacts, Adaptation, and Vulnerability. Part A: Global and Sectoral Aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge, United Kingdom and New York, NY, USA, Cambridge University Press, pp. 35-94, ISBN: 9781107641655
    Publication Date: 2015-03-08
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  • 47
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2000. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 403 (2000): 37-65, doi:10.1017/S0022112099006916.
    Description: The dynamics of expanding domes of isothermal lava are studied by treating the lava as a viscoplastic material with the Herschel–Bulkley constitutive law. Thin-layer theory is developed for radially symmetric extrusions onto horizontal plates. This provides an evolution equation for the thickness of the fluid that can be used to model expanding isothermal lava domes. Numerical and analytical solutions are derived that explore the effects of yield stress, shear thinning and basal sliding on the dome evolution. The results are briefly compared with an experimental study. It is found that it is difficult to unravel the combined effects of shear thinning and yield stress; this may prove important to studies that attempt to infer yield stress from morphology of flowing lava.
    Description: The financial support of an EPSRC Advanced Fellowship is gratefully acknowledged by R.V. C. N. J. B. was partially supported by the NSF Grant OCE-9616017 and an EPSRC Visiting Fellowship Grant GR/M50409.
    Keywords: Isothermal lava domes
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  • 48
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2004. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Parasitology 128 (2004): 577-584, doi:10.1017/S0031182004005025.
    Description: Human serum high-density lipoprotein (HDL) is necessary and sufficient for the short-term maintenance of Plasmodium falciparum in in vitro culture. However, at high concentrations it is toxic to the parasite. A heat-labile component is apparently responsible for the stage-specific toxicity to parasites within infected erythrocytes 12–42 h after invasion, i.e. during trophozoite maturation. The effects of HDL on parasite metabolism (as determined by nucleic acid synthesis) are evident at about 30 h after invasion. Parasites treated with HDL show gross abnormalities by light and electron microscopy.
    Description: Professor Hajduk was supported by NIH. Professor Day was supported by a Research Leave Fellowship from The Wellcome Trust. Dr Imrie and Ms Carter were supported by Programme Grant funding awarded to Professor Day from The Wellcome Trust. Dr Ferguson was supported by an equipment grant from The Wellcome Trust.
    Keywords: Plasmodium falciparum ; High density lipoprotein
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  • 49
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2004. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Geological Magazine 141 (2004): 195-207, doi:10.1017/S001675680400891X.
    Description: Because magmatism associated with subduction is thought to be the principal source for continental crust generation, assessing the relative contribution of pre-existing (subducted and assimilated) continental material to arc magmatism in accreted arcs is important to understanding the origin of continental crust. We present a detailed Nd isotopic stratigraphy for volcanic and volcaniclastic formations from the South Mayo Trough, an accreted oceanic arc exposed in the western Irish Caledonides. These units span an arc–continent collision event, the Grampian (Taconic) Orogeny, in which an intra-oceanic island arc was accreted onto the passive continental margin of Laurentia starting at [similar] 475 Ma (Arenig). The stratigraphy corresponding to pre-, syn- and post-collisional volcanism reveals a progression of [varepsilon]Nd(t) from strongly positive values, consistent with melt derivation almost exclusively from oceanic mantle beneath the arc, to strongly negative values, indicating incorporation of continental material into the melt. Using [varepsilon]Nd(t) values of meta-sediments that represent the Laurentian passive margin and accretionary prism, we are able to quantify the relative proportions of continent-derived melt at various stages of arc formation and accretion. Mass balance calculations show that mantle-derived magmatism contributes substantially to melt production during all stages of arc–continent collision, never accounting for less than 21% of the total. This implies that a significant addition of new, rather than recycled, continental crust can accompany arc–continent collision and continental arc magmatism.
    Keywords: Grampian Orogeny ; Western Ireland ; Continental crust ; Nd isotopes ; Laurentia ; Iapetus Ocean
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  • 50
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2007. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 574 (2007): 465-493, doi:10.1017/S0022112006004216.
    Description: Acoustic Doppler velocity profiler (ADVP) measurements of instantaneous three-dimensional velocity profiles over the entire turbulent boundary layer height, δ, of rough-bed open-channel flows at moderate Reynolds numbers show the presence of large scale coherent shear stress structures (called LC3S herein) in the zones of uniformly retarded streamwise momentum. LC3S events over streamwise distances of several boundary layer thicknesses dominate the mean shear dynamics. Polymodal histograms of short streamwise velocity samples confirm the subdivision of uniform streamwise momentum into three zones also observed by Adrian et al. (J. Fluid Mech., vol. 422, 2000, p. 1). The mean streamwise dimension of the zones varies between 1δ and 2.5δ. In the intermediate region (0.2〈z/δ〈0.75), the contribution of conditionally sampled u'w' events to the mean vertical turbulent kinetic energy (TKE) flux as a function of threshold level H is found to be generated by LC3S events above a critical threshold level Hmax for which the ascendant net momentum flux between LC3S of ejection and sweep types is maximal. The vertical profile of Hmax is nearly constant over the intermediate region, with a value of 5 independent of the flow conditions. Very good agreement is found for all flow conditions including the free-stream shear flows studied in Adrian et al. (2000). If normalized by the squared bed friction velocity, the ascendant net momentum flux containing 90% of the mean TKE flux is equal to 20% of the shear stress due to bed friction. In the intermediate region this value is nearly constant for all flow conditions investigated herein. It can be deduced that free-surface turbulence in open-channel flows originates from processes driven by LC3S, associated with the zonal organization of streamwise momentum. The good agreement with mean quadrant distribution results in the literature implies that LC3S identified in this study are common features in the outer region of shear flows.
    Description: The study was supported by the Swiss National Foundation for Scientific Research for the experimental part (grant 2100 050739) and the French National Center for Scientific Research (CNRS) for the data analysis and interpretation.
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  • 51
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2005. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 540 (2005): 49-73, doi:10.1017/S002211200500577X.
    Description: Circulation driven by horizontal differential heating is studied, using a double-walled Plexiglas tank (20×15×2.5 cm3) filled with salt water. For instances of heating/cooling from above and below, results indicate that there is always quasi-equilibrium circulation. In contrast to most previous results from experimental/ numerical studies, circulation in our experiments appears in the form of a shallow cell adjacent to the boundary of thermal forcing. The non-dimensional stream-function maximum confirms the 1/5-power law of Rossby, Ψ ∼Ra1/5 L . Dissipation rate measured in the experiments appears to be consistent with theory. For cases of heating/cooling from a sloping bottom, circulation is similar to cases with a flat bottom; circulation is strong if heating is below cooling, but it is rather weak if heating is above cooling. Nevertheless, circulation in all cases is visible to the naked eye.
    Description: W. W. was supported by The National Natural Science Foundation of China through grant 40476010 and the Research Fund for the Doctoral Program of Higher Education through grant 20030423011. R. X. H. was supported by the National Science Foundation through grant OCE-0094807 and the National Aero- Space Administration through Contract 1229833 (NRA-00-OES-05) to the Woods Hole Oceanographic Institution.
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  • 52
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    Cambridge University Press
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2008. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 602 (2008): 241-266, doi:10.1017/S0022112008000827.
    Description: The stability of a hydraulically driven sill flow in a rotating channel with smoothly varying cross-section is considered. The smooth topography forces the thickness of the moving layer to vanish at its two edges. The basic flow is assumed to have zero potential vorticity, as is the case in elementary models of the hydraulic behaviour of deep ocean straits. Such flows are found to always satisfy Ripa's necessary condition for instability. Direct calculation of the linear growth rates and numerical simulation of finite-amplitude behaviour suggests that the flows are, in fact, always unstable. The growth rates and nonlinear evolution depend largely on the dimensionless channel curvature κ=2αg′/f2, where 2α is the dimensional curvature, g′ is the reduced gravity, and f is the Coriolis parameter. Very small positive (or negative) values of κ correspond to dynamically wide channels and are associated with strong instability and the breakup of the basic flow into a train of eddies. For moderate or large values of κ, the instability widens the flow and increases its potential vorticity but does not destroy its character as a coherent stream. Ripa's condition for stability suggests a theory for the final width and potential vorticity that works moderately well. The observed and predicted growth in these quantities are minimal for κ≥1, suggesting that the zero-potential-vorticity approximation holds when the channel is narrower than a Rossby radius based on the initial maximum depth. The instability results from a resonant interaction between two waves trapped on opposite edges of the stream. Interactions can occur between two Kelvin-like frontal waves, between two inertia–gravity waves, or between one wave of each type. The growing disturbance has zero energy and extracts zero energy from the mean. At the same time, there is an overall conversion of kinetic energy to potential energy for κ〉0, with the reverse occurring for κ〈0. When it acts on a hydraulically controlled basic state, the instability tends to eliminate the band of counterflow that is predicted by hydraulic theory and that confounds hydraulic-based estimates of volume fluxes in the field. Eddy generation downstream of the controlling sill occurs if the downstream value of κ is sufficiently small.
    Description: This work was supported by the National Science Foundation (Grant OCE- 0525729).
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  • 53
    Publication Date: 2022-05-25
    Description: © Macmillan Publishers Limited, 2010. This article is distributed under the terms of the Creative Commons Attribution-NonCommercial-No Derivative Works 3.0 Unported License. The definitive version was published in Nature Communications 1 (2010): 49, doi:10.1038/ncomms1045.
    Description: Motor innervation to the tetrapod forelimb and fish pectoral fin is assumed to share a conserved spinal cord origin, despite major structural and functional innovations of the appendage during the vertebrate water-to-land transition. In this paper, we present anatomical and embryological evidence showing that pectoral motoneurons also originate in the hindbrain among ray-finned fish. New and previous data for lobe-finned fish, a group that includes tetrapods, and more basal cartilaginous fish showed pectoral innervation that was consistent with a hindbrain-spinal origin of motoneurons. Together, these findings support a hindbrain–spinal phenotype as the ancestral vertebrate condition that originated as a postural adaptation for pectoral control of head orientation. A phylogenetic analysis indicated that Hox gene modules were shared in fish and tetrapod pectoral systems. We propose that evolutionary shifts in Hox gene expression along the body axis provided a transcriptional mechanism allowing eventual decoupling of pectoral motoneurons from the hindbrain much like their target appendage gained independence from the head.
    Description: Th is work was supported by the National Institutes of Health and National Science Foundation.
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  • 54
    Publication Date: 2022-05-25
    Description: © Macmillan Publishers Limited, 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 3 (2012): 669, doi:10.1038/ncomms1673.
    Description: Na+/K+ pumps move net charge through the cell membrane by mediating unequal exchange of intracellular Na+ and extracellular K+. Most charge moves during transitions that release Na+ to the cell exterior. When pumps are constrained to bind and release only Na+, a membrane voltage-step redistributes pumps among conformations with zero, one, two or three bound Na+, thereby transiently generating current. By applying rapid voltage steps to squid giant axons, we previously identified three components in such transient currents, with distinct relaxation speeds: fast (which nearly parallels the voltage-jump time course), medium speed (τm=0.2–0.5 ms) and slow (τs=1–10 ms). Here we show that these three components are tightly correlated, both in their magnitudes and in the time courses of their changes. The correlations reveal the dynamics of the conformational rearrangements that release three Na+ to the exterior (or sequester them into their binding sites) one at a time, in an obligatorily sequential manner.
    Description: This research was directly supported by the Intramural Research Program of the National Institutes of Health (NIH), NINDS, grants NIH HL36783 to D.C.G., and NIH U54GM087519 and R01GM030376 to F.B.
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  • 55
    Publication Date: 2022-05-25
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 2 (2012): 582, doi:10.1038/srep00582.
    Description: Over the last century humans have altered the export of fluvial materials leading to significant changes in morphology, chemistry, and biology of the coastal ocean. Here we present sedimentary, paleoenvironmental and paleogenetic evidence to show that the Black Sea, a nearly enclosed marine basin, was affected by land use long before the changes of the Industrial Era. Although watershed hydroclimate was spatially and temporally variable over the last ~3000 years, surface salinity dropped systematically in the Black Sea. Sediment loads delivered by Danube River, the main tributary of the Black Sea, significantly increased as land use intensified in the last two millennia, which led to a rapid expansion of its delta. Lastly, proliferation of diatoms and dinoflagellates over the last five to six centuries, when intensive deforestation occurred in Eastern Europe, points to an anthropogenic pulse of river-borne nutrients that radically transformed the food web structure in the Black Sea.
    Description: This study was supported by grants OISE 0637108, EAR 0952146, OCE 0602423 and OCE 0825020 from the National Science Foundation and grants from the Woods Hole Oceanographic Institution.
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  • 56
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 3 (2013): 2802, doi:10.1038/srep02802.
    Description: It is usually assumed that metabolic constraints restrict deep-sea corals to cold-water habitats, with ‘deep-sea’ and ‘cold-water’ corals often used as synonymous. Here we report on the first measurements of biological characters of deep-sea corals from the central Red Sea, where they occur at temperatures exceeding 20°C in highly oligotrophic and oxygen-limited waters. Low respiration rates, low calcification rates, and minimized tissue cover indicate that a reduced metabolism is one of the key adaptations to prevailing environmental conditions. We investigated four sites and encountered six species of which at least two appear to be undescribed. One species is previously reported from the Red Sea but occurs in deep cold waters outside the Red Sea raising interesting questions about presumed environmental constraints for other deep-sea corals. Our findings suggest that the present understanding of deep-sea coral persistence and resilience needs to be revisited.
    Keywords: Ecosystem ecology ; Biodiversity ; Genetics ; Metabolism
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  • 57
    Publication Date: 2022-05-25
    Description: Author Posting. © Annual Reviews, 2003. This article is posted here by permission of Annual Reviews for personal use, not for redistribution. The definitive version was published in Annual Review of Environment and Resources 28 (2003): 521-558, doi:10.1146/annurev.energy.28.011503.163443.
    Description: Agriculture and industrial development have led to inadvertent changes in the natural carbon cycle. As a consequence, concentrations of carbon dioxide and other greenhouse gases have increased in the atmosphere and may lead to changes in climate. The current challenge facing society is to develop options for future management of the carbon cycle. A variety of approaches has been suggested: direct reduction of emissions, deliberate manipulation of the natural carbon cycle to enhance sequestration, and capture and isolation of carbon from fossil fuel use. Policy development to date has laid out some of the general principles to which carbon management should adhere. These are summarized as: how much carbon is stored, by what means, and for how long. To successfully manage carbon for climate purposes requires increased understanding of carbon cycle dynamics and improvement in the scientific capabilities available for measurement as well as for policy needs. The specific needs for scientific information to underpin carbon cycle management decisions are not yet broadly known. A stronger dialogue between decision makers and scientists must be developed to foster improved application of scientific knowledge to decisions. This review focuses on the current knowledge of the carbon cycle, carbon measurement capabilities (with an emphasis on the continental scale) and the relevance of carbon cycle science to carbon sequestration goals.
    Description: The National Center for Atmospheric Research is supported by the National Science Foundation.
    Keywords: Carbon sequestration ; Measurement techniques ; Climate ; Kyoto protocol
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  • 58
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2004. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 516 (2004): 83-113, doi:10.1017/S0022112004000473.
    Description: Oceanic observations indicate that abyssal mixing tends to be localized to regions of rough topography. How localized mixing interacts with the ambient fluid in a stratified, rotating system is an open question. To gain insight into this complicated process laboratory experiments are used to explore the interaction of mechanically induced boundary mixing and an interior body of linearly stratified rotating fluid. Turbulence is generated by a single vertically oscillating horizontal bar of finite horizontal extent, located at mid-depth along the tank wall. The turbulence forms a region of mixed fluid which quickly reaches a steady-state height and collapses into the interior. The mixed-layer thickness, $h_m\,{\sim}\,\gamma ({\omega}/{N})^{1/2}$, is spatially uniform and independent of the Coriolis frequency $f$. $N$ is the initial buoyancy frequency, $\omega$ is the bar oscillation frequency, and $\gamma\,{\approx}\,1$ cm is an empirical constant determined by the bar geometry. Surprisingly, the export of mixed fluid does not occur as a boundary current along the tank perimeter. Rather, mixed fluid intrudes directly into the interior as a radial front of uniform height, advancing with a speed comparable to a gravity current. The volume of mixed fluid grows linearly with time, $V\,{\propto}\,({N}/{f})^{3/2}h_m^3 \textit{ft}$, and is independent of the lateral extent of the mixing bar. Entrainment into the turbulent zone occurs principally through horizontal flows at the level of the mixing that appear to eliminate export by a geostrophic boundary flow. The circulation patterns suggest a model of unmixed fluid laterally entrained at velocity $u_e \,{\sim}\,Nh_m $ into the open sides of a turbulent zone with height $h_{m}$ and a length, perpendicular to the boundary, proportional to $L_f \,{\equiv}\,\gamma ({\omega}/{f})^{1/2}$. Here $L_{f}$ is an equilibrium length scale associated with rotational control of bar-generated turbulence. The model flux of exported mixed fluid $Q\,{\sim}\,h_m L_f u_e$ is constant and in agreement with the experiments.
    Description: This work was supported by the Ocean Ventures Fund, the Westcott Fund and the WHOI Academic Programs Office. Financial support was also provided by the National Science Foundation through grant OCE-9616949.
    Keywords: Abyssal mixing ; Stratified rotating system
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  • 59
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2004. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 506 (2004): 217-244, doi:10.1017/S0022112004008572.
    Description: The effect of both vertical and horizontal components of the Earth's rotation on plumes during deep convection in the ocean is studied. In the laboratory, the misalignment, characterized by the angle $\alpha$, between the buoyancy force (‘effective’ free-fall acceleration ${\bm g}_e$) and the rotation axis ${\bm \Omega}$ is produced by using the centrifugal force: an experimental tank was placed at a large distance from the centre of the turntable. The mathematical analogy between the laboratory model and the oceanic environment is presented. For $\alpha\,{=}\,30^\circ$, a number of laboratory experiments spanning a wide range of the buoyancy flux parameter, and correspondingly Reynolds number, is used to illustrate the development of the convective plume from a point source in regimes ranging from weakly to highly turbulent. New features of the flow, as compared to $\alpha\,{=}\,0$, are documented and explained. The incoming heavier dyed fluid jet disintegrates into fast-sinking coherent blobs (in a low-Reynolds-number regime) or turbulent billows (in a high-Reynolds-number regime) and a more diffuse cloud of highly diluted dyed water. An analysis of the forces acting on an ellipsoid moving in a rotating fluid with the main balance including the buoyancy, Coriolis forces, and the hydrodynamic reaction due to generation of inertial waves correctly predicts the trajectory of a descending blob. It also explains the tendency of the plume to develop in the direction intermediate between ${\bm g}_e$ and ${\bm \Omega}$ and to shift ‘eastward’ (lagging the rotation of the centrifuge) if the plume is envisaged as an ensemble of blobs. The stretching of the highly diluted dyed water along the absolute vorticity tubes with simultaneous shearing by horizontal quasi-two-dimensional flow produces conspicuous tilted structures or tilted Taylor ‘ink walls’. The misalignment between ${\bm g}_e$ and ${\bm \Omega}$ enhances the turbulent mixing and development of tilted structures by breaking the symmetry and producing motions directed away from the rotation axis. We argue that the conditions at the sites of ocean deep convection are favourable for the development of tilted structures because of the smallness of the Rossby number and an extreme homogenization of the mixed layer. We hypothesize that the homogenized sublayers observed within actively convecting regions in the ocean may not be horizontal, but in fact analogous to the tilted ‘ink walls’ observed in the laboratory experiments and that they represent the internal structure of a plume on horizontal scales smaller than its depth.
    Description: This work was supported by a grant from The Andrew W. Mellon Foundation Endowed Fund for Innovative Research and by the National Science Foundation grant OCE-0116910.
    Keywords: Convective plumes
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  • 60
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2000. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 404 (2000):117-149, doi:10.1017/S0022112099007065.
    Description: In order to gain insight into the hydraulics of rotating-channel flow, a set of initial-value problems analogous to Long's towing experiments is considered. Specifically, we calculate the adjustment caused by the introduction of a stationary obstacle into a steady, single-layer flow in a rotating channel of infinite length. Using the semigeostrophic approximation and the assumption of uniform potential vorticity, we predict the critical obstacle height above which upstream influence occurs. This height is a function of the initial Froude number, the ratio of the channel width to an appropriately defined Rossby radius of deformation, and a third parameter governing how the initial volume flux in sidewall boundary layers is partitioned. (In all cases, the latter is held to a fixed value specifying zero flow in the right-hand (facing downstream) boundary layer.) The temporal development of the flow according to the full, two-dimensional shallow water equations is calculated numerically, revealing numerous interesting features such as upstream-propagating shocks and separated rarefying intrusions, downstream hydraulic jumps in both depth and stream width, flow separation, and two types of recirculations. The semigeostrophic prediction of the critical obstacle height proves accurate for relatively narrow channels and moderately accurate for wide channels. Significantly, we find that contact with the left-hand wall (facing downstream) is crucial to most of the interesting and important features. For example, no instances are found of hydraulic control of flow that is separated from the left-hand wall at the sill, despite the fact that such states have been predicted by previous semigeostrophic theories. The calculations result in a series of regime diagrams that should be very helpful for investigators who wish to gain insight into rotating, hydraulically driven flow.
    Description: The authors have been supported by the National Science Foundation through Grants (OCE-9810599 for L.J.P. and K.R.H. and OCE-9711186 for EPC). L.J.P. also received support from the Office of Naval Research under Grant N00014-95-1-0456 and K.R.H. under grant N00014-93-1-0263.
    Keywords: Rotating-channel flow ; Hydraulically driven flow
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  • 61
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2004. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 514 (2004): 107-119, doi:10.1017/S0022112004000126.
    Description: While acoustic scatter from oceanic turbulence is sensitive to temperature–salinity covariations, there are unfortunately no published measurements of the turbulent temperature–salinity co-spectrum. Several models have been proposed for the form of the co-spectrum of two scalars in turbulence, but they all produce unsatisfactory results when applied to the turbulent scattering equations (either predicting negative scattering cross-sections in some regimes or predicting implausible levels of correlation between temperature and salinity at some scales). A new model is proposed and shown to give physically plausible scattering predictions in all density regimes. High-frequency acoustic data illustrate the importance of the co-spectrum for acoustic scattering, but were collected in a density regime where there is little difference between the co-spectrum models.
    Description: This work was supported by NSERC and by ONR under grant #N00014-93-1-0362.
    Keywords: Oceanic turbulence ; Co-spectrum ; Temperature–salinity covariations
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  • 62
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2002. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 452 (2002): 97-121, doi:10.1017/S0022112001006668.
    Description: Buoyancy-driven surface currents were generated in the laboratory by releasing buoyant fluid from a source adjacent to a vertical boundary in a rotating container. Different bottom topographies that simulate both a continental slope and a continental ridge were introduced in the container. The topography modified the flow in comparison with the at bottom case where the current grew in width and depth until it became unstable once to non-axisymmetric disturbances. However, when topography was introduced a second instability of the buoyancy-driven current was observed. The most important parameter describing the flow is the ratio of continental shelf width W to the width L* of the current at the onset of the instability. The values of L* for the first instability, and L*[minus sign]W for the second instability were not influenced by the topography and were 2–6 times the Rossby radius. Thus, the parameter describing the flow can be expressed as the ratio of the width of the continental shelf to the Rossby radius. When this ratio is larger than 2–6 the second instability was observed on the current front. A continental ridge allowed the disturbance to grow to larger amplitude with formation of eddies and fronts, while a gentle continental slope reduced the growth rate and amplitude of the most unstable mode, when compared to the continental ridge topography. When present, eddies did not separate from the main current, and remained near the shelf break. On the other hand, for the largest values of the Rossby radius the first instability was suppressed and the flow was observed to remain stable. A small but significant variation was found in the wavelength of the first instability, which was smaller for a current over topography than over a flat bottom.
    Description: Partial support for C.C. was provided by a TMR fellowship, MAS3-CT96-5017.
    Keywords: Buoyancy-driven currents ; Bottom topography
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  • 63
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    Annual Reviews
    Publication Date: 2022-05-25
    Description: Author Posting. © Annual Reviews, 2006. This article is posted here by permission of Annual Reviews for personal use, not for redistribution. The definitive version was published in Annual Review of Fluid Mechanics 38 (2006): 395-425, doi:10.1146/annurev.fluid.38.050304.092129.
    Description: Over the past four decades, the combination of in situ and remote sensing observations has demonstrated that long nonlinear internal solitary-like waves are ubiquitous features of coastal oceans. The following provides an overview of the properties of steady internal solitary waves and the transient processes of wave generation and evolution, primarily from the point of view of weakly nonlinear theory, of which the Korteweg-de Vries equation is the most frequently used example. However, the oceanographically important processes of wave instability and breaking, generally inaccessible with these models, are also discussed. Furthermore, observations often show strongly nonlinear waves whose properties can only be explained with fully nonlinear models.
    Description: KRH acknowledges support from NSF and ONR and an Independent Study Award from the Woods Hole Oceanographic Institution. WKM acknowledges support from NSF and ONR, which has made his work in this area possible, in close collaboration with former graduate students at Scripps Institution of Oceanography and MIT.
    Keywords: Solitary waves ; Nonlinear waves ; Stratified flow ; Physical Oceanography
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  • 64
    facet.materialart.
    Unknown
    Cambridge University Press
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2000. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published Journal of the Marine Biological Association of the UK 80 (2000): 827-834, doi:10.1017/S0025315400002800.
    Description: The shell and internal anatomy of the montacutid bivalve Mysella verrilli is described for the first time. The species is remarkable in that the oesophagus has developed into a suctorial proboscis. This has been accompanied by the loss of the palps. In addition the gonads have been extended from the dorsal part of the body to form two gill-like extensions to which the reduced inner demibranchs attach along the postero–ventral margin. Mysella verrilli broods its young in the mantle cavity to the late veliger stage before releasing them. It is believed that the species is probably a suctorial ectoparasite on a soft-bodied benthic invertebrate.
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  • 65
    Publication Date: 2022-05-25
    Description: Author Posting. © Microscopy Society of America, 2007. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Microscopy and Microanalysis 13 Suppl. 2 (2007): 10-11, doi:10.1017/S1431927607075186.
    Description: Differential interference contrast (DIC) microscopy is widely used to observe structure and motion in unstained, transparent living cells and isolated organelles, producing a monochromatic shadowcast image of optical phase gradient. Polarized light microscopy (Pol) reveals structural anisotropy due to form birefringence, intrinsic birefringence, stress birefringence, etc. DIC and Pol complement each other as, for example, in a live dividing cell, the DIC image will clearly show the chromosomes while the Pol image will depict the distribution of the birefringent microtubules in the spindle. Both methods, however, have the same shortcomings: they require the proper orientation of a specimen in relation to the optical system in order to achieve best results.
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  • 66
    Publication Date: 2022-05-25
    Description: © Macmillan Publishers Limited, 2011. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 2 (2011): 293, doi:10.1038/ncomms1297.
    Description: The relative importance of north–south migrations of the intertropical convergence zone (ITCZ) versus El Niño-Southern Oscillation and its associated Pacific Walker Circulation (PWC) variability for past hydrological change in the western tropical Pacific is unclear. Here we show that north–south ITCZ migration was not the only mechanism of tropical Pacific hydrologic variability during the last millennium, and that PWC variability profoundly influenced tropical Pacific hydrology. We present hydrological reconstructions from Cattle Pond, Dongdao Island of the South China Sea, where multi-decadal rainfall and downcore grain size variations are correlated to the Southern Oscillation Index during the instrumental era. Our downcore grain size reconstructions indicate that this site received less precipitation during relatively warm periods, AD 1000–1400 and AD 1850–2000, compared with the cool period (AD 1400–1850). Including our new reconstructions in a synthesis of tropical Pacific records results in a spatial pattern of hydrologic variability that implicates the PWC.
    Description: This work was supported by the Natural Science Foundation of China (NSFC) (40730107) and the Major State Basic Research Development Program of China (973 Program) (No.2010CB428902). DWO acknowledges support from the US NSF.
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  • 67
    Publication Date: 2022-05-25
    Description: © Macmillan Publishers Limited, 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 3 (2012): 620, doi:10.1038/ncomms1636.
    Description: The Mid-Cayman spreading centre is an ultraslow-spreading ridge in the Caribbean Sea. Its extreme depth and geographic isolation from other mid-ocean ridges offer insights into the effects of pressure on hydrothermal venting, and the biogeography of vent fauna. Here we report the discovery of two hydrothermal vent fields on the Mid-Cayman spreading centre. The Von Damm Vent Field is located on the upper slopes of an oceanic core complex at a depth of 2,300 m. High-temperature venting in this off-axis setting suggests that the global incidence of vent fields may be underestimated. At a depth of 4,960 m on the Mid-Cayman spreading centre axis, the Beebe Vent Field emits copper-enriched fluids and a buoyant plume that rises 1,100 m, consistent with 〉 400 °C venting from the world’s deepest known hydrothermal system. At both sites, a new morphospecies of alvinocaridid shrimp dominates faunal assemblages, which exhibit similarities to those of Mid-Atlantic vents.
    Description: This work is supported by a UK NERC award (NE/F017774/1 & NE/F017758/1) to J.T.C., D.P.C., B.J.M., K.S. and P.A.T., Royal Society Travel Grant 2009/R3 to R.C.S., A.M. is supported by SENSEnet, a Marie Curie Initial Training Network (ITN) funded by the European Commission Seventh Framework Programme, Contract Number PITN-GA-2009-237868 and a NASA ASTEP Grant NNX09AB75G to C.R.G. and C.L.V.D., which are gratefully acknowledged.
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  • 68
    Publication Date: 2022-05-25
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Genetics 44 (2012): 121-126, doi:10.1038/ng.1054.
    Description: To make full use of research data, the bioscience community needs to adopt technologies and reward mechanisms that support interoperability and promote the growth of an open 'data commoning' culture. Here we describe the prerequisites for data commoning and present an established and growing ecosystem of solutions using the shared 'Investigation-Study-Assay' framework to support that vision.
    Description: The authors also acknowledge the following funding sources in particular: UK Biotechnology and Biological Sciences Research Council (BBSRC) BB/I000771/1 to S.-A.S. and A.T.; UK BBSRC BB/I025840/1 to S.-A.S.; UK BBSRC BB/I000917/1 to D.F.; EU CarcinoGENOMICS (PL037712) to J.K.; US National Institutes of Health (NIH) 1RC2CA148222-01 to W.H. and the HSCI; US MIRADA LTERS DEB-0717390 and Alfred P. Sloan Foundation (ICoMM) to L.A.-Z.; Swiss Federal Government through the Federal Office of Education and Science (FOES) to L.B. and I.X.; EU Innovative Medicines Initiative (IMI) Open PHACTS 115191 to C.T.E.; US Department of Energy (DOE) DE-AC02- 06CH11357 and Arthur P. Sloan Foundation (2011- 6-05) to J.G.; UK BBSRC SysMO-DB2 BB/I004637/1 and BBG0102181 to C.G.; UK BBSRC BB/I000933/1 to C.S. and J.L.G.; UK MRC UD99999906 to J.L.G.; US NIH R21 MH087336 (National Institute of Mental Health) and R00 GM079953 (National Institute of General Medical Science) to A.L.; NIH U54 HG006097 to J.C. and C.E.S.; Australian government through the National Collaborative Research Infrastructure Strategy (NCRIS); BIRN U24-RR025736 and BioScholar RO1-GM083871 to G.B. and the 2009 Super Science initiative to C.A.S.
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  • 69
    Publication Date: 2022-05-25
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 3 (2012): 803, doi:10.1038/ncomms1811.
    Description: Ventilation and mixing of oceanic gyres is important to ocean-atmosphere heat and gas transfer, and to mid-latitude nutrient supply. The rates of mode water formation are believed to impact climate and carbon exchange between the surface and mid-depth water over decadal periods. Here, a record of 14C/12C (1780–1940), which is a proxy for vertical ocean mixing, from an annually banded coral from Bermuda, shows limited inter-annual variability and a substantial Suess Effect (the decrease in 14C/12C since 1900). The Sargasso Sea mixing rates between the surface and thermocline varied minimally over the past two centuries, despite changes to mean-hemispheric climate, including the Little Ice Age and variability in the North Atlantic Oscillation. This result indicates that regional formation rates of sub-tropical mode water are stable over decades, and that anthropogenic carbon absorbed by the ocean does not return to the surface at a variable rate.
    Description: Funding provided by NSF’s Chemical Oceanography Program OCE - 0526463 and 0961980 and the Stephen Hui Trust Fund.
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  • 70
    Publication Date: 2022-05-25
    Description: © The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 2 (2012): 553, doi:10.1038/srep00553.
    Description: Sea surface temperature imagery, satellite altimetry, and a surface drifter track reveal an unusual tilt in the Gulf Stream path that brought the Gulf Stream to 39.9°N near the Middle Atlantic Bight shelfbreak—200 km north of its mean position—in October 2011, while a large meander brought Gulf Stream water within 12 km of the shelfbreak in December 2011. Near-bottom temperature measurements from lobster traps on the outer continental shelf south of New England show distinct warming events (temperature increases exceeding 6°C) in November and December 2011. Moored profiler measurements over the continental slope show high salinities and temperatures, suggesting that the warm water on the continental shelf originated in the Gulf Stream. The combination of unusual water properties over the shelf and slope in late fall and the subsequent mild winter may affect seasonal stratification and habitat selection for marine life over the continental shelf in 2012.
    Description: Profiler data were made available by the Ocean Observatory Initiative (OOI) during the construction phase of the project. The OOI is funded by the National Science Foundation and managed by the Consortium for Ocean Leadership. Drifter data were provided by Tim Shaw and David Calhoun at Cape Fear Community College.GGGwas supported by NSFGrant OCE-1129125. RET was supported by the Postdoctoral Scholar Program at the Woods Hole Oceanographic Institution, with funding provided by the Cooperative Institute for the North Atlantic Region. MA was supported by the Penzance Endowed Fund in Support of Assistant Scientists.
    Keywords: Ecology ; Climate change ; Atmospheric science ; Oceanography
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  • 71
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature 496 (2013): 311-316, doi:10.1038/nature12027.
    Description: The discovery of a living coelacanth specimen in 1938 was remarkable, as this lineage of lobe-finned fish was thought to have become extinct 70 million years ago. The modern coelacanth looks remarkably similar to many of its ancient relatives, and its evolutionary proximity to our own fish ancestors provides a glimpse of the fish that first walked on land. Here we report the genome sequence of the African coelacanth, Latimeria chalumnae. Through a phylogenomic analysis, we conclude that the lungfish, and not the coelacanth, is the closest living relative of tetrapods. Coelacanth protein-coding genes are significantly more slowly evolving than those of tetrapods, unlike other genomic features. Analyses of changes in genes and regulatory elements during the vertebrate adaptation to land highlight genes involved in immunity, nitrogen excretion and the development of fins, tail, ear, eye, brain and olfaction. Functional assays of enhancers involved in the fin-to-limb transition and in the emergence of extra-embryonic tissues show the importance of the coelacanth genome as a blueprint for understanding tetrapod evolution.
    Description: cquisition and storage of Latimeria chalumnae samples was supported by grants from the African Coelacanth Ecosystem Programme of the South African National Department of Science and Technology. Generation of the Latimeria chalumnae and Protopterus annectens sequences by the Broad Institute of the Massachusetts Institute of Technology (MIT) and Harvard University was supported by grants from the National Human Genome Research Institute (NHGRI). K.L.T. is the recipient of a EURYI award from the European Science Foundation.
    Keywords: Genome evolution ; Comparative genomics
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  • 72
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature 499 (2013): 209–213, doi:10.1038/nature12221.
    Description: Coccolithophores have influenced the global climate for over 200 million years1. These marine phytoplankton can account for 20 per cent of total carbon fixation in some systems2. They form blooms that can occupy hundreds of thousands of square kilometres and are distinguished by their elegantly sculpted calcium carbonate exoskeletons (coccoliths), rendering them visible from space3. Although coccolithophores export carbon in the form of organic matter and calcite to the sea floor, they also release CO2 in the calcification process. Hence, they have a complex influence on the carbon cycle, driving either CO2 production or uptake, sequestration and export to the deep ocean4. Here we report the first haptophyte reference genome, from the coccolithophore Emiliania huxleyi strain CCMP1516, and sequences from 13 additional isolates. Our analyses reveal a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome. Comparisons across strains demonstrate that E. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires. Genome variability within this species complex seems to underpin its capacity both to thrive in habitats ranging from the equator to the subarctic and to form large-scale episodic blooms under a wide variety of environmental conditions.
    Description: Joint Genome Institute (JGI) contributions were supported by the Office of Science of the US Department of Energy (DOE) under contract no. 7DE-AC02-05CH11231.
    Keywords: Genetic variation
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  • 73
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature 499 (2013): 431–437, doi:10.1038/nature12352.
    Description: Genome sequencing enhances our understanding of the biological world by providing blueprints for the evolutionary and functional diversity that shapes the biosphere. However, microbial genomes that are currently available are of limited phylogenetic breadth, owing to our historical inability to cultivate most microorganisms in the laboratory. We apply single-cell genomics to target and sequence 201 uncultivated archaeal and bacterial cells from nine diverse habitats belonging to 29 major mostly uncharted branches of the tree of life, so-called ‘microbial dark matter’. With this additional genomic information, we are able to resolve many intra- and inter-phylum-level relationships and to propose two new superphyla. We uncover unexpected metabolic features that extend our understanding of biology and challenge established boundaries between the three domains of life. These include a novel amino acid use for the opal stop codon, an archaeal-type purine synthesis in Bacteria and complete sigma factors in Archaea similar to those in Bacteria. The single-cell genomes also served to phylogenetically anchor up to 20% of metagenomic reads in some habitats, facilitating organism-level interpretation of ecosystem function. This study greatly expands the genomic representation of the tree of life and provides a systematic step towards a better understanding of biological evolution on our planet.
    Description: The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office of Science of the US Department of Energy under Contract No. DE-AC02-05CH11231. We also thank the CeBiTec Bioinformatics Resource Facility, which is supported byBMBF grant 031A190. B.P.H. and J.A.D. were supported by the NASA Exobiology grant EXO-NNX11AR78GandNSFOISE 096842and B.P.H. by a generous contribution from G. Fullmer through the UNLV Foundation. S.M.S was supported by NSF grants OCE-0452333 and OCE-1136727, and the WHOI’s Andrew W. Mellon Fund for Innovative Research; and S.J.H. by the Canadian Foundation for Innovation, the British Columbia Knowledge Development Fund, the National Sciences and Engineering Research Council (NSERC) of Canada and the TULA foundation funded Centre for Microbial Diversity and Evolution (CMDE), and the Canadian Institute for Advanced Research (CIFAR). R.S. was supported by NSF grants DEB-841933, EF-826924, OCE-1232982, OCE-821374 and OCE-1136488, and the Deep Life I grant by the Alfred P. Sloan Foundation. P.H.was supported by a Discovery Outstanding Researcher Award (DORA) from the Australian Research Council, grant DP120103498.
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  • 74
    Publication Date: 2022-05-25
    Description: © The Author(s), 2014]. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 4 (2014): 6648, doi:10.1038/srep06648.
    Description: Sediments from Tibetan lakes in NW China are potentially sensitive recorders of climate change and its impact on ecosystem function. However, the important plankton members in many Tibetan Lakes do not make and leave microscopically diagnostic features in the sedimentary record. Here we established a taxon-specific molecular approach to specifically identify and quantify sedimentary ancient DNA (sedaDNA) of non-fossilized planktonic organisms preserved in a 5-m sediment core from Kusai Lake spanning the last 3100 years. The reliability of the approach was validated with multiple independent genetic markers. Parallel analyses of the geochemistry of the core and paleo-climate proxies revealed that Monsoon strength-driven changes in nutrient availability, temperature, and salinity as well as orbitally-driven changes in light intensity were all responsible for the observed temporal changes in the abundance of two dominant phytoplankton groups in the lake, Synechococcus (cyanobacteria) and Isochrysis (haptophyte algae). Collectively our data show that global and regional climatic events exhibited a strong influence on the paleoecology of phototrophic plankton in Kusai Lake.
    Description: This research was supported by grants from the National Natural Science Foundation of China (Grant Nos. 41030211 and 41302022), the National Basic Research Program of China (Grant No. 2011CB808800), and State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences (Nos GBL11410 and GBL11201).
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  • 75
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2008. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 604 (2008): 369-388, doi:10.1017/S0022112008001237.
    Description: We discuss laboratory experiments investigating mixing in a density-driven current flowing down a sloping bottom, in a rotating homogenous fluid. A systematic study spanning a wide range of Froude, 0.8 〈 Fr 〈 10, and Reynolds, 10 〈 Re 〈 1400, numbers was conducted by varying three parameters: the bottom slope; the flow rate; and the density of the dense fluid. Different flow regimes were observed, i.e. waves (non-breaking and breaking) and turbulent regimes, while changing the above parameters. Mixing in the density-driven current has been quantified within the observed regimes, and at different locations on the slope. The dependence of mixing on the relevant non-dimensional numbers, i.e. slope, Fr and Re, is discussed. The entrainment parameter, E, was found to be dependent not only on Fr, as assumed in previous studies, but also on Re. In particular, mixing increased with increasing Fr and Re. For low Fr and Re, the magnitude of the mixing was comparable to mixing in the ocean. For large Fr and Re, mixing was comparable to that observed in previous laboratory experiments that exhibited the classic turbulent entrainment behaviour.
    Description: Support was given by the National Science Foundation project number OCE-0350891.
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  • 76
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2008. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 605 (2008): 281-291, doi:10.1017/S002211200800150X.
    Description: A condition is derived for the hydraulic criticality of a 2-layer flow with transverse variations in both layer velocities and thicknesses. The condition can be expressed in terms of a generalized composite Froude number. The derivation can be extended in order to obtain a critical condition for an N-layer system. The results apply to inviscid flows subject to the usual hydraulic approximation of gradual variations along the channel and is restricted to flows in which the velocity remains single-signed within any given layer. For an intermediate layer with a partial segment of sluggish flow, the long-wave dynamics of the overlying and underlying layers become decoupled.
    Description: The work described herein was supported by the Office of Naval Research (N00014- 07-1-0590) and the National Science Foundation (OCE-0525729).
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  • 77
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2008. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 616 (2008): 327-356, doi:10.1017/S0022112008003984.
    Description: A steady theory is presented for gravity currents propagating with constant speed into a stratified fluid with a general density profile. Solution curves for front speed versus height have an energy-conserving upper bound (the conjugate state) and a lower bound marked by the onset of upstream influence. The conjugate state is the largest-amplitude nonlinear internal wave supported by the ambient stratification, and in the limit of weak stratification approaches Benjamin's energy-conserving gravity current solution. When the front speed becomes critical with respect to linear long waves generated above the current, steady solutions cannot be calculated, implying upstream influence. For non-uniform stratification, the critical long-wave speed exceeds the ambient long-wave speed, and the critical-Froude-number condition appropriate for uniform stratification must be generalized. The theoretical results demonstrate a clear connection between internal waves and gravity currents. The steady theory is also compared with non-hydrostatic numerical solutions of the full lock release initial-value problem. Some solutions resemble classic gravity currents with no upstream disturbance, but others show long internal waves propagating ahead of the gravity current. Wave generation generally occurs when the stratification and current speed are such that the steady gravity current theory fails. Thus the steady theory is consistent with the occurrence of either wave-generating or steady gravity solutions to the dam-break problem. When the available potential energy of the dam is large enough, the numerical simulations approach the energy-conserving conjugate state. Existing laboratory experiments for intrusions and gravity currents produced by full-depth lock exchange flows over a range of stratification profiles show excellent agreement with the conjugate state solutions.
    Description: K. R. H. was supported by ONR grant N000140610798
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  • 78
    Publication Date: 2022-05-25
    Description: © International Society for Microbial Ecology, 2011. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in The ISME Journal 5 (2011): 1748–1758, doi:10.1038/ismej.2011.48.
    Description: A novel hydrothermal field has been discovered at the base of Lōihi Seamount, Hawaii, at 5000 mbsl. Geochemical analyses demonstrate that ‘FeMO Deep’, while only 0.2 °C above ambient seawater temperature, derives from a distal, ultra-diffuse hydrothermal source. FeMO Deep is expressed as regional seafloor seepage of gelatinous iron- and silica-rich deposits, pooling between and over basalt pillows, in places over a meter thick. The system is capped by mm to cm thick hydrothermally derived iron-oxyhydroxide- and manganese-oxide-layered crusts. We use molecular analyses (16S rDNA-based) of extant communities combined with fluorescent in situ hybridizations to demonstrate that FeMO Deep deposits contain living iron-oxidizing Zetaproteobacteria related to the recently isolated strain Mariprofundus ferroxydans. Bioenergetic calculations, based on in-situ electrochemical measurements and cell counts, indicate that reactions between iron and oxygen are important in supporting chemosynthesis in the mats, which we infer forms a trophic base of the mat ecosystem. We suggest that the biogenic FeMO Deep hydrothermal deposit represents a modern analog for one class of geological iron deposits known as ‘umbers’ (for example, Troodos ophilolites, Cyprus) because of striking similarities in size, setting and internal structures.
    Description: Funding has been provided by the NSF Microbial Observatories Program (KJE, DE, BT, HS and CM), by the Gordon and Betty Moore Foundation (KJE), the College of Letters, Arts, and Sciences at the University of Southern California (KJE) and by the NASA Astrobiology Institute (KJE, DE).
    Keywords: Geomicrobiology ; Deep biosphere ; Hydrothermal ; Iron bacteria ; Iron oxidation
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  • 79
    Publication Date: 2022-05-25
    Description: Author Posting. © The Authors, 2012. This article is posted here by permission of Nature Publishing Group. The definitive version was published in Nature 486 (2012): 207-214, doi:10.1038/nature11234.
    Description: Studies of the human microbiome have revealed that even healthy individuals differ remarkably in the microbes that occupy habitats such as the gut, skin and vagina. Much of this diversity remains unexplained, although diet, environment, host genetics and early microbial exposure have all been implicated. Accordingly, to characterize the ecology of human-associated microbial communities, the Human Microbiome Project has analysed the largest cohort and set of distinct, clinically relevant body habitats so far. We found the diversity and abundance of each habitat’s signature microbes to vary widely even among healthy subjects, with strong niche specialization both within and among individuals. The project encountered an estimated 81–99% of the genera, enzyme families and community configurations occupied by the healthy Western microbiome. Metagenomic carriage of metabolic pathways was stable among individuals despite variation in community structure, and ethnic/racial background proved to be one of the strongest associations of both pathways and microbes with clinical metadata. These results thus delineate the range of structural and functional configurations normal in the microbial communities of a healthy population, enabling future characterization of the epidemiology, ecology and translational applications of the human microbiome.
    Description: This research was supported in part by National Institutes of Health grants U54HG004969 to B.W.B.; U54HG003273 to R.A.G.; U54HG004973 to R.A.G., S.K.H. and J.F.P.; U54HG003067 to E.S.Lander; U54AI084844 to K.E.N.; N01AI30071 to R.L.Strausberg; U54HG004968 to G.M.W.; U01HG004866 to O.R.W.; U54HG003079 to R.K.W.; R01HG005969 to C.H.; R01HG004872 to R.K.; R01HG004885 to M.P.; R01HG005975 to P.D.S.; R01HG004908 to Y.Y.; R01HG004900 to M.K.Cho and P. Sankar; R01HG005171 to D.E.H.; R01HG004853 to A.L.M.; R01HG004856 to R.R.; R01HG004877 to R.R.S. and R.F.; R01HG005172 to P. Spicer.; R01HG004857 to M.P.; R01HG004906 to T.M.S.; R21HG005811 to E.A.V.; M.J.B. was supported by UH2AR057506; G.A.B. was supported by UH2AI083263 and UH3AI083263 (G.A.B., C. N. Cornelissen, L. K. Eaves and J. F. Strauss); S.M.H. was supported by UH3DK083993 (V. B. Young, E. B. Chang, F. Meyer, T. M. S., M. L. Sogin, J. M. Tiedje); K.P.R. was supported by UH2DK083990 (J. V.); J.A.S. and H.H.K. were supported by UH2AR057504 and UH3AR057504 (J.A.S.); DP2OD001500 to K.M.A.; N01HG62088 to the Coriell Institute for Medical Research; U01DE016937 to F.E.D.; S.K.H. was supported by RC1DE0202098 and R01DE021574 (S.K.H. and H. Li); J.I. was supported by R21CA139193 (J.I. and D. S. Michaud); K.P.L. was supported by P30DE020751 (D. J. Smith); Army Research Office grant W911NF-11-1-0473 to C.H.; National Science Foundation grants NSF DBI-1053486 to C.H. and NSF IIS-0812111 to M.P.; The Office of Science of the US Department of Energy under Contract No. DE-AC02-05CH11231 for P.S. C.; LANL Laboratory-Directed Research and Development grant 20100034DR and the US Defense Threat Reduction Agency grants B104153I and B084531I to P.S.C.; Research Foundation - Flanders (FWO) grant to K.F. and J.Raes; R.K. is an HHMI Early Career Scientist; Gordon&BettyMoore Foundation funding and institutional funding fromthe J. David Gladstone Institutes to K.S.P.; A.M.S. was supported by fellowships provided by the Rackham Graduate School and the NIH Molecular Mechanisms in Microbial Pathogenesis Training Grant T32AI007528; a Crohn’s and Colitis Foundation of Canada Grant in Aid of Research to E.A.V.; 2010 IBM Faculty Award to K.C.W.; analysis of the HMPdata was performed using National Energy Research Scientific Computing resources, the BluBioU Computational Resource at Rice University.
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  • 80
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2013. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 731 (2013): 545-578, doi:10.1017/jfm.2013.361 .
    Description: A significant amount of research effort has been made to understand the boundary layer instability and the generation and evolution of turbulence subject to periodic/oscillatory flows. However, little is known about bottom boundary layers driven by highly transient and intermittent free-stream flow forcing, such as solitary wave motion. To better understand the nature of the instability mechanisms and turbulent flow characteristics subject to solitary wave motion, a large number of direct numerical simulations are conducted. Different amplitudes of random initial fluctuating velocity field are imposed. Two different instability mechanisms are observed within the range of Reynolds number studied. The first is a short-lived, nonlinear, long-wave instability which is observed during the acceleration phase, and the second is a broadband instability that occurs during the deceleration phase. Transition from a laminar to turbulent state is observed to follow two different breakdown pathways: the first follows the sequence of $K$-type secondary instability of a near-wall boundary layer at comparatively lower Reynolds number and the second one follows a breakdown path similar to that of free shear layers. Overall characteristics of the flow are categorized into four regimes as: (i) laminar; (ii) disturbed laminar; (iii) transitional; and (iv) turbulent. Our categorization into four regimes is consistent with earlier works. However, this study is able to provide more specific definitions through the instability characteristics and the turbulence breakdown process.
    Description: This study is supported by National Science Foundation (CMMI-1135026; OCE- 1130217; OCE-1131016).
    Description: 2014-08-28
    Keywords: Coastal engineering ; Solitary waves ; Turbulent flows
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  • 81
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2002. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 468 (2002): 179-204, doi:10.1017/S0022112002001520.
    Description: A similarity solution to the long-wave shallow-water equations is obtained for a density current (reduced gravity = g[prime prime or minute], Coriolis parameter = f) propagating alongshore (y = 0). The potential vorticity q = f/H1 is uniform in [minus sign][infty infinity] 〈 x [less-than-or-eq, slant] xnose(t), 0 〈 y [less-than-or-eq, slant] L(x, t), and the nose of this advancing potential vorticity front displaces fluid of greater q = f/H0, which is located at L 〈 y 〈 [infty infinity]. If L0 = L([minus sign][infty infinity], t), the nose point with L(xnose(t), t) = 0 moves with velocity Unose = [surd radical]g[prime prime or minute]H0 [phi], where [phi] is a function of H1/H0, f2L20/g[prime prime or minute]H0. The assumptions made in the similarity theory are verified by an initial value solution of the complete reduced-gravity shallow-water equations. The latter also reveal the new effect of a Kelvin shock wave colliding with a potential vorticity front, as is confirmed by a laboratory experiment. Also confirmed is the expansion wave structure of the intrusion, but the observed values of Unose are only in qualitative agreement; the difference is attributed to the presence of small-scale (non-hydrostatic) turbulence in the laboratory experiment but not in the numerical solutions.
    Description: This work is funded by National Science Foundation grants OCE-9726584 & OCE-0092504 (M. E. S.) and OCE-9810599 (K. R. H.).
    Keywords: Potential vorticity front ; Frontal intrusion ; Kelvin wave
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  • 82
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2003. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 481 (2003): 329-353, doi:10.1017/S0022112003004051.
    Description: In this article we investigate time-periodic shear flows in the context of the two-dimensional vorticity equation, which may be applied to describe certain large-scale atmospheric and oceanic flows. The linear stability analyses of both discrete and continuous profiles demonstrate that parametric instability can arise even in this simple model: the oscillations can stabilize (destabilize) an otherwise unstable (stable) shear flow, as in Mathieu's equation (Stoker 1950). Nonlinear simulations of the continuous oscillatory basic state support the predictions from linear theory and, in addition, illustrate the evolution of the instability process and thereby show the structure of the vortices that emerge. The discovery of parametric instability in this model suggests that this mechanism can occur in geophysical shear flows and provides an additional means through which turbulent mixing can be generated in large-scale flows.
    Description: F.P.’s and G.F.’s research was supported by grants from NSF, OPP- 9910052 and OCE-0137023. J.P.’s research is supported in part by a grant from NSF, OCE-9901654.
    Keywords: Time-periodic shear flows ; Parametric instability
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  • 83
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2004. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 515 (2004): 415-443, doi:10.1017/S0022112004000576.
    Description: The investigation involves the hydraulic behaviour of a dense layer of fluid flowing over an obstacle and subject to entrainment of mass and momentum from a dynamically inactive (but possibly moving) overlying fluid. An approach based on the use of reduced gravity, shallow-water theory with a cross-interface entrainment velocity is compared with numerical simulations based on a model with continuously varying stratification and velocity. The locations of critical flow (hydraulic control) in the continuous model are estimated by observing the direction of propagation of small-amplitude long-wave disturbances introduced into the flow field. Although some of the trends predicted by the shallow-water model are observed in the continuous model, the agreement between the interface profiles and the position of critical flow is quantitatively poor. A reformulation of the equations governing the continuous flow suggests that the reduced gravity model systematically underestimates inertia and overestimates buoyancy. These differences are quantified by shape coefficients that measure the vertical non-uniformities of the density and horizontal velocity that arise, in part, by incomplete mixing of entrained mass and momentum over the lower-layer depth. Under conditions of self-similarity (as in Wood's similarity solution) the shape coefficients are constant and the formulation determines a new criterion for and location of critical flow. This location generally lies upstream of the critical section predicted by the reduced-gravity model. Self-similarity is not observed in the numerically generated flow, but the observed critical section continues to lie upstream of the location predicted by the reduced gravity model. The factors influencing this result are explored.
    Description: M. H. N. would like to thank the Danish Natural Science Research Council for financial support. L. P. and K. H. were supported by the Office of Naval Research under grant N00014-1-01-0167 and by the National Science Foundation under grant OCE-0132903.
    Keywords: Hydraulic behaviour ; Reduced gravity model
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  • 84
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    Cambridge University Press
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2001. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 437 (2001): 301-323, doi:10.1017/S0022112001004402.
    Description: Laboratory and numerical experiments are used to study flow of a uniform-density fluid on the [beta]-plane around a thin zonally elongated island (or ridge segment in the abyss). This orientation is chosen specifically to highlight the roles of the zonal boundary layer dynamics in controlling the circulation around the island. There are examples of deep ocean topography that fall into this category which make the work directly applicable to oceanic flows. Linear theory for the transport around the island and the flow structure is based on a modification of the Island Rule (Pedlosky et al. 1997; Pratt & Pedlosky 1999). The linear solution gives a north–south symmetric flow around the island with novel features, including stagnation points which divide the zonal boundary layers into eastward and westward flowing zones, and a western boundary layer of vanishing length, and zonal jets. Laboratory experiments agree with the linear theory for small degrees of nonlinearity, as measured by the ratio of the inertial to Munk boundary layer scales. With increasing nonlinearity the north–south symmetry is broken. The southern stagnation point (for anticyclonic forcing) moves to the eastern tip of the island. The flow rounding the eastern tip from the northern side of the island now separates from the island. Time-dependence emerges and recirculation cells develop on the northern side of the island. Mean transport around the island is relatively unaffected by nonlinearity and given to within 20% by the modified Island Rule. Numerical solutions of the shallow water equations are in close agreement with the laboratory results. The transition from zonal to meridional island orientation occurs for island inclinations from zonal greater than about 20°.
    Description: This work was supported by the National Science Foundation (Grant Number OCE96-16949).
    Keywords: Zonal boundary layer dynamics ; Island Rule
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  • 85
    Publication Date: 2022-05-25
    Description: First published online as a Review in Advance on October 24, 2005. (Some corrections may occur before final publication online and in print)
    Description: Author Posting. © Annual Reviews, 2005. This article is posted here by permission of Annual Reviews for personal use, not for redistribution. The definitive version was published in Annual Review of Physiology 68 (2006): 22.1-22.29, doi:10.1146/annurev.physiol.68.040104.105418.
    Description: Superfast muscles of vertebrates power sound production. The fastest, the swimbladder muscle of toadfish, generates mechanical power at frequencies in excess of 200 Hz. To operate at these frequencies, the speed of relaxation has had to increase approximately 50-fold. This increase is accomplished by modifications of three kinetic traits: (a) a fast calcium transient due to extremely high concentration of sarcoplasmic reticulum (SR)-Ca2+ pumps and parvalbumin, (b) fast off-rate of Ca2+ from troponin C due to an alteration in troponin, and (c) fast cross-bridge detachment rate constant (g, 50 times faster than that in rabbit fast-twitch muscle) due to an alteration in myosin. Although these three modifications permit swimbladder muscle to generate mechanical work at high frequencies (where locomotor muscles cannot), it comes with a cost: The high g causes a large reduction in attached force-generating cross-bridges, making the swimbladder incapable of powering low-frequency locomotory movements. Hence the locomotory and sound-producing muscles have mutually exclusive designs.
    Description: This work was made possible by support from NIH grants AR38404 and AR46125 as well as the University of Pennsylvania Research Foundation.
    Keywords: Parvalbumin ; Ca2+ release ; Ca2+ uptake ; Cross-bridges ; Adaptation ; Sound production ; Whitman Center
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  • 86
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2006. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 564 (2006): 435-454, doi:10.1017/S0022112006001522.
    Description: Motivated by work on tilted convection (Sheremet, J. Fluid Mech., vol. 506, 2004, p. 217), a set of experiments is presented here using the same set-up of a tilted tank attached to a rotating centrifuge with a 2.5 m arm. Within the tank small, almost neutrally buoyant, spheres are released, and their trajectories are recorded. Thus the forces acting on a sphere can be analysed in the case of misalignment between the buoyancy force and the axis of rotation. The angles of descent characterizing the trajectory are compared with inviscid linear theory developed by Stewartson (Q. J. Math. Appl. Mech., vol. 6, 1953, p. 141), and the agreement is found to be good. The angles should be independent of the density anomaly of the spheres compared to their environment. Using the descent velocity from non-rotating experiments, the density of the spheres is estimated and used to determine the drag acting on them in the rotating experiments. It is found that the drag is up to 50% larger than expected from Stewartson's theory. The agreement is best, not for infinitesimal, but for small Rossby numbers. The results are consistent with observations recorded by Maxworthy (J. Fluid Mech., vol. 40, 1970, p. 453).
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  • 87
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2007. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 593 (2007): 1-32, doi:10.1017/S0022112007008415.
    Description: Results are presented from an experimental study of shallow flow in a channel partially obstructed by an array of circular cylinders. The cylinder array is a model for emergent vegetation in an open channel, but also represents a simple sparse porous medium. A shear layer with regular vortex structures forms at the edge of the array, evolving downstream to an equilibrium width and vortex size. The vortices induce nearly periodic oscillations with a frequency that matches the most unstable linear mode for a parallel shear flow. The shear layer is asymmetric about the array interface and has a two-layer structure. An inner region of maximum shear near the interface contains a velocity inflection point and establishes the penetration of momentum into the array. An outer region, resembling a boundary layer, forms in the main channel, and establishes the scale of the vortices. The vortex structure, educed by conditional sampling, shows strong crossflows with sweeps from the main channel and ejections from the array, which create significant momentum and mass fluxes across the interface. The sweeps maintain the coherent structures by enhancing shear and energy production at the interface. A linear stability analysis is consistent with the experimental results and demonstrates that the instability is excited by the differential drag between the channel and the array.
    Description: This material is based upon work supported by the National Science Foundation under Grant 0125056.
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  • 88
    Publication Date: 2022-05-25
    Description: © International Society for Microbial Ecology, 2011. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in The ISME Journal 5 (2011): 1565–1567, doi:10.1038/ismej.2011.39.
    Description: Interest in sampling of diverse environments, combined with advances in high-throughput sequencing, vastly accelerates the pace at which new genomes and metagenomes are generated. For example, as of January 2011, 12 500 user-generated metagenomes have been submitted to the public MG-RAST Annotation server (http://metagenomics. nmpdr.org; Meyer et al., 2008), 490% of which were produced using high-throughput sequencing methodologies. We have entered into an era of ‘mega-sequencing projects’ that include the Genomic Encyclopaedia of Bacteria and Archaea project (http://www.jgi.doe.gov/programs/GEBA), the Microbial Earth Project (http://genome.jgi-psf. org/programs/bacteria-archaea/MEP/index.jsf), the Human Microbiome Project (http://nihroadmap.nih. gov/hmp), the Metagenomics of the Human Intestinal Tract consortium (http://www.metahit.eu), the Terragenome Initiative (http://www.terragenome. org), the Tara Oceans Expedition (http://oceans. taraexpeditions.org), the National Ecological Observatory Network (NEON-http://www.neoninc.org), the International Census of Marine Microbes (ICoMM-http://icomm.mbl.edu), Microbial Inventory Research Across Diverse Aquatic Long-Term Ecological Research Sites (http://amarallab.mbl. edu/mirada/mirada.html), the Earth Microbiome Project (http://www.earthmicrobiome.org) and other funded and unfunded projects, with many more visionary projects on the horizon.
    Repository Name: Woods Hole Open Access Server
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  • 89
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    Unknown
    Cambridge University Press
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2012. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 692 (2012): 1-4, doi:10.1017/jfm.2011.468.
    Description: Salt fingers are a form of double-diffusive convection that can occur in a wide variety of fluid systems, ranging from stellar interiors and oceans to magma chambers. Their amplitude has long been difficult to quantify, and a variety of mechanisms have been proposed. Radko & Smith (J. Fluid Mech., this issue, vol. 692, 2012, pp. 5–27) have developed a new theory that balances the basic growth rate with that of secondary instabilities that act on the finite amplitude fingers. Their approach promises a way forward for computationally challenging systems with vastly different scales of decay for momentum, heat and dissolved substances.
    Description: 2013-01-24
    Keywords: Double diffusive convection ; Instability ; Ocean processes
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  • 90
    facet.materialart.
    Unknown
    Cambridge University Press
    Publication Date: 2022-05-25
    Description: Author Posting. © Cambridge University Press, 2013. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 726 (2013): 371-403, doi:10.1017/jfm.2013.231.
    Description: Nonlinear stratified spindown of an along-isobath current over an insulated slope is shown to develop asymmetries in the vertical circulation and vertical relative vorticity field. During spindown, cyclonic vorticity is weakened to a greater extent than anticyclonic vorticity near the boundary because of buoyancy advection. As a consequence, Ekman pumping is weakened over Ekman suction. Momentum advection can weaken Ekman pumping and strengthen Ekman suction. Time-dependent feedback between the geostrophic flow and the frictional secondary circulation induces asymmetry in cyclonic and anticyclonic vorticity away from the boundary. Buoyancy advection over a slope can modify the secondary circulation such that anticyclonic vorticity decays faster than cyclonic vorticity outside the boundary layer. In contrast, momentum advection can cause cyclonic vorticity to spin down faster than anticyclonic vorticity. A scaling and analytical solutions are derived for when buoyancy advection over a slope can have a more significant impact than momentum advection on these asymmetries. In order to test this scaling and analytical solutions, numerical experiments are run in which both buoyancy and momentum advection are active. These solutions are contrasted with homogeneous or stratified spindown over a flat bottom, in which momentum advection controls the asymmetries. These results are applied to ocean currents over continental shelves and slopes.
    Description: 2014-06-05
    Keywords: Geophysical flows ; Ocean circulation ; Topographic effects
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  • 91
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    Unknown
    Nature Publishing Group
    In:  EPIC3Nature Communications, Nature Publishing Group, 5, pp. 5520, ISSN: 2041-1723
    Publication Date: 2016-06-13
    Description: One of the most abrupt and yet unexplained past rises in atmospheric CO2 (〉10 p.p.m.v. in two centuries) occurred in quasi-synchrony with abrupt northern hemispheric warming into the Bølling/Allerød, ~14,600 years ago. Here we use a U/Th-dated record of atmospheric Δ14C from Tahiti corals to provide an independent and precise age control for this CO2 rise. We also use model simulations to show that the release of old (nearly 14C-free) carbon can explain these changes in CO2 and Δ14C. The Δ14C record provides an independent constraint on the amount of carbon released (~125 Pg C). We suggest, in line with observations of atmospheric CH4 and terrigenous biomarkers, that thawing permafrost in high northern latitudes could have been the source of carbon, possibly with contribution from flooding of the Siberian continental shelf during meltwater pulse 1A. Our findings highlight the potential of the permafrost carbon reservoir to modulate abrupt climate changes via greenhouse-gas feedbacks.
    Repository Name: EPIC Alfred Wegener Institut
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  • 92
    Publication Date: 2014-12-17
    Description: Interior Antarctica is among the most remote places on Earth and was thought to be beyond the reach of human impacts when Amundsen and Scott raced to the South Pole in 1911. Here we show detailed measurements from an extensive array of 16 ice cores quantifying substantial toxic heavy metal lead pollution at South Pole and throughout Antarctica by 1889 – beating polar explorers by more than 22 years. Unlike the Arctic where lead pollution peaked in the 1970s, lead pollution in Antarctica was as high in the early 20th century as at any time since industrialization. The similar timing and magnitude of changes in lead deposition across Antarctica, as well as the characteristic isotopic signature of Broken Hill lead found throughout the continent, suggest that this single emission source in southern Australia was responsible for the introduction of lead pollution into Antarctica at the end of the 19th century and remains a significant source today. An estimated 660 t of industrial lead have been deposited over Antarctica during the past 130 years as a result of mid-latitude industrial emissions, with regional-to-global scale circulation likely modulating aerosol concentrations. Despite abatement efforts, significant lead pollution in Antarctica persists into the 21st century.
    Repository Name: EPIC Alfred Wegener Institut
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  • 93
    Publication Date: 2022-05-26
    Description: © 2008 Nature Publishing Group. This article is distributed under the terms of the Creative Commons Attribution-Noncommercial-Share Alike license. The definitive version was published in Nature Biotechnology 26 (2008): 909-915, doi:10.1038/nbt.1482.
    Description: Plant-parasitic nematodes are major agricultural pests worldwide and novel approaches to control them are sorely needed. We report the draft genome sequence of the root-knot nematode Meloidogyne incognita, a biotrophic parasite of many crops, including tomato, cotton and coffee. Most of the assembled sequence of this asexually reproducing nematode, totaling 86 Mb, exists in pairs of homologous but divergent segments. This suggests that ancient allelic regions in M. incognita are evolving toward effective haploidy, permitting new mechanisms of adaptation. The number and diversity of plant cell wall–degrading enzymes in M. incognita is unprecedented in any animal for which a genome sequence is available, and may derive from multiple horizontal gene transfers from bacterial sources. Our results provide insights into the adaptations required by metazoans to successfully parasitize immunocompetent plants, and open the way for discovering new antiparasitic strategies.
    Description: SCRI laboratory (V.C.B. and J.T.J.) received funding from the Scottish Government. This work benefited from links funded via COST Action 872. G.V.M. and V.L. are supported by ARC, CNRS, EMBO, MENRT and Region Rhone-Alpes. G.V.M., M.R.-R. and V.L. are also funded by the EU Cascade Network of Excellence and the integrated project Crescendo. M.-C.C. is supported by MENRT.
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  • 94
    Publication Date: 2022-05-26
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature 500 (2013): 453–457, doi:10.1038/nature12326.
    Description: Loss of sexual reproduction is considered an evolutionary dead end for metazoans, but bdelloid rotifers challenge this view as they appear to have persisted asexually for millions of years1. Neither male sex organs nor meiosis have ever been observed in these microscopic animals: oocytes are formed through mitotic divisions, with no reduction of chromosome number and no indication of chromosome pairing2. However, current evidence does not exclude that they may engage in sex on rare, cryptic occasions. Here we report the genome of a bdelloid rotifer, Adineta vaga (Davis, 1873)3, and show that its structure is incompatible with conventional meiosis. At gene scale, the genome of A. vaga is tetraploid and comprises both anciently duplicated segments and less divergent allelic regions. However, in contrast to sexual species, the allelic regions are rearranged and sometimes even found on the same chromosome. Such structure does not allow meiotic pairing; instead, we find abundant evidence of gene conversion, which may limit the accumulation of deleterious mutations in the absence of meiosis. Gene families involved in resistance to oxidation, carbohydrate metabolism and defence against transposons are significantly expanded, which may explain why transposable elements cover only 3% of the assembled sequence. Furthermore, 8% of the genes are likely to be of non-metazoan origin and were probably acquired horizontally. This apparent convergence between bdelloids and prokaryotes sheds new light on the evolutionary significance of sex.
    Description: This work was supported by Genoscope-CES (where most of the sequencing was performed), by US National Science Foundation grants MCB-0821956 and MCB-1121334 to I.A., by German Research Foundation grant HA 5163/2-1 to O.H., by grant 11.G34.31.0008 fromthe Ministry of Education and Science of the Russian Federation to A.S.K., by grant NSF CAREER number 0644282 to M.K., by US National Science Foundation grant MCB-0923676 to D.B.M.W., by FRFC grant 2.4.655.09.F from the Belgian Fonds National de la Recherche Scientifique (FNRS) and a start-up grant from the University of Namur to K.V.D.; J.F.F. and K.V.D. thank also J.-P. Descy (University of Namur) for funding support.
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  • 95
    Publication Date: 2022-05-26
    Description: Author Posting. © Cambridge University Press, 2011. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 686 (2011): 534-567, doi:10.1017/jfm.2011.345.
    Description: Most of the nearly zonal, multiple, alternating jets observed in the oceans are latent, that is, their amplitudes are weak relative to the ambient mesoscale eddies. Yet, relatively strong jets are often observed in dynamical simulations. To explore mechanisms controlling the degree of latency, we analyse solutions of an idealized, eddy-resolving and flat-bottom quasigeostrophic model, in which dynamically generated mesoscale eddies maintain and interact with a set of multiple zonal jets. We find that the degree of the latency is controlled primarily by the bottom friction: the larger the friction parameter, the more latent are the jets; and the degree of the latency is substantial for a realistic range of the oceanic bottom friction coefficient. This result not only provides a plausible explanation for the latency of the oceanic jets, but it may also be relevant to the prominent atmospheric multiple jets observed on giant gas planets, such as Jupiter. We hypothesize that these jets can be so strong because of the relative absence of the bottom friction. The mechanism controlling the latency in our solutions is understood in terms of the changes induced in the linear eigenmodes of the time–mean flow by varying the bottom friction coefficient; these changes, in turn, affect and modify the jets. Effects of large Reynolds numbers on the eddies, jets, and the latency are also discussed.
    Description: Funding was provided: for P.B. by NSF grants OCE 0725796 and OCE 0845150, for J.T.F. by NSF grant OCE 0845150, for I.K. by NSF grant OCE 0842834, and for S.K. by the University Research Fellowship from the Royal Society. S.K. also acknowledges support from the Mary Sears Grant from the Woods Hole Oceanographic Institution.
    Description: 2012-09-27
    Keywords: Geostrophic turbulence ; Quasi-geostrophic flows ; Waves in rotating fluids
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  • 96
    Publication Date: 2022-05-26
    Description: Author Posting. © Cambridge University Press, 2013. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 738 (2014): 143-183, doi:10.1017/jfm.2013.583.
    Description: We investigate and quantify stirring due to chaotic advection within a steady, three-dimensional, Ekman-driven, rotating cylinder flow. The flow field has vertical overturning and horizontal swirling motion, and is an idealization of motion observed in some ocean eddies. The flow is characterized by strong background rotation, and we explore variations in Ekman and Rossby numbers, E and Ro, over ranges appropriate for the ocean mesoscale and submesoscale. A high-resolution spectral element model is used in conjunction with linear analytical theory, weakly nonlinear resonance analysis and a kinematic model in order to map out the barriers, manifolds, resonance layers and other objects that provide a template for chaotic stirring. As expected, chaos arises when a radially symmetric background state is perturbed by a symmetry-breaking disturbance. In the background state, each trajectory lives on a torus and some of the latter survive the perturbation and act as barriers to chaotic transport, a result consistent with an extension of the KAM theorem for three-dimensional, volume-preserving flow. For shallow eddies, where E is O(1), the flow is dominated by thin resonant layers sandwiched between KAM-type barriers, and the stirring rate is weak. On the other hand, eddies with moderately small E experience thicker resonant layers, wider-spread chaos and much more rapid stirring. This trend reverses for sufficiently small E, corresponding to deep eddies, where the vertical rigidity imposed by strong rotation limits the stirring. The bulk stirring rate, estimated from a passive tracer release, confirms the non-monotonic variation in stirring rate with E. This result is shown to be consistent with linear Ekman layer theory in conjunction with a resonant width calculation and the Taylor–Proudman theorem. The theory is able to roughly predict the value of E at which stirring is maximum. For large disturbances, the stirring rate becomes monotonic over the range of Ekman numbers explored. We also explore variation in the eddy aspect ratio.
    Description: L.J.P., I.I.R., T.M.O. and P.W. have been supported on DOD (MURI) grant N000141110087, administered by the Office of Naval Research. I.I.R. and L.J.P. received additional support from Grant NSF-OCE-0725796 from the National Science Foundation.
    Description: 2014-12-05
    Keywords: Chaotic advection ; Geophysical and geological flows ; Ocean processes
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  • 97
    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 5 (2014): 4342, doi:10.1038/ncomms5342.
    Description: Three-dimensional (3D) bioimaging, visualization and data analysis are in strong need of powerful 3D exploration techniques. We develop virtual finger (VF) to generate 3D curves, points and regions-of-interest in the 3D space of a volumetric image with a single finger operation, such as a computer mouse stroke, or click or zoom from the 2D-projection plane of an image as visualized with a computer. VF provides efficient methods for acquisition, visualization and analysis of 3D images for roundworm, fruitfly, dragonfly, mouse, rat and human. Specifically, VF enables instant 3D optical zoom-in imaging, 3D free-form optical microsurgery, and 3D visualization and annotation of terabytes of whole-brain image volumes. VF also leads to orders of magnitude better efficiency of automated 3D reconstruction of neurons and similar biostructures over our previous systems. We use VF to generate from images of 1,107 Drosophila GAL4 lines a projectome of a Drosophila brain.
    Description: This work was mainly supported by Howard Hughes Medical Institute. H.P. is currently supported by the Allen Institute for Brain Science. R.W.T. and A.M. were supported by a grant MH071739 (MERIT).
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  • 98
    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 5 (2014): 5385, doi:10.1038/ncomms6385.
    Description: Submarine mud volcanoes are important sources of methane to the water column. However, the temporal variability of their mud and methane emissions is unknown. Methane emissions were previously proposed to result from a dynamic equilibrium between upward migration and consumption at the seabed by methane-consuming microbes. Here we show non-steady-state situations of vigorous mud movement that are revealed through variations in fluid flow, seabed temperature and seafloor bathymetry. Time series data for pressure, temperature, pH and seafloor photography were collected over 431 days using a benthic observatory at the active Håkon Mosby Mud Volcano. We documented 25 pulses of hot subsurface fluids, accompanied by eruptions that changed the landscape of the mud volcano. Four major events triggered rapid sediment uplift of more than a metre in height, substantial lateral flow of muds at average velocities of 0.4 m per day, and significant emissions of methane and CO2 from the seafloor.
    Description: Participation of the Sentry AUV and TETHYS team from WHOI was funded by the Arctic Research Initiative of WHOI’s Ocean and Climate Change Institute and the NASA ASTEP grant NNX09AB76G. Additional funds were made available by the AWI, the Max Planck Society and the DFG METEOR/MERIAN programme, as well as the Leibniz programme to A.B.
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  • 99
    Publication Date: 2022-05-26
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 5 (2014): 4102, doi:10.1038/ncomms5102.
    Description: Tropical south-western Pacific temperatures are of vital importance to the Great Barrier Reef (GBR), but the role of sea surface temperatures (SSTs) in the growth of the GBR since the Last Glacial Maximum remains largely unknown. Here we present records of Sr/Ca and δ18O for Last Glacial Maximum and deglacial corals that show a considerably steeper meridional SST gradient than the present day in the central GBR. We find a 1–2 °C larger temperature decrease between 17° and 20°S about 20,000 to 13,000 years ago. The result is best explained by the northward expansion of cooler subtropical waters due to a weakening of the South Pacific gyre and East Australian Current. Our findings indicate that the GBR experienced substantial meridional temperature change during the last deglaciation, and serve to explain anomalous deglacial drying of northeastern Australia. Overall, the GBR developed through significant SST change and may be more resilient than previously thought.
    Description: Funding was provided by Deutsche Forschungsgemeinschaft (FE 615/4-1), Australian Research Council (Discovery grant DP1094001), Australia and New Zealand IODP Consortium, Australian Institute of Nuclear Science and Engineering, Natural Environmental Research Council (NE/H014136/1, NE/H014268/1), the Cooperative Research Program of the Center for Advanced Marine Core Research (10B039, 11A013, 11B041), Ministry of Earth Sciences, Govt. of India (with partial support from DST & ISRO-GBP) and Japan Society for the Promotion of Science (JSPS NEXT-GR031).
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  • 100
    Publication Date: 2022-05-26
    Description: Author Posting. © Cambridge University Press, 2005. This article is posted here by permission of Cambridge University Press for personal use, not for redistribution. The definitive version was published in Journal of Fluid Mechanics 536 (2005): 253-283, doi:10.1017/S0022112005004544.
    Description: The generation of a gravity current by the release of a semi-infinite region of buoyant fluid of depth $H$ overlying a deeper, denser and quiescent lower layer in a rotating channel of width $w$ is considered. Previous studies have focused on the characteristics of the gravity current head region and produced relations for the gravity current speed $c_{b}$ and width $w_b$ as a functions of the local current depth along the wall $h_b$, reduced gravity $g^\prime$, and Coriolis frequency $f$. Here, the dam-break problem is solved analytically by the method of characteristics assuming reduced-gravity flow, uniform potential vorticity and a semigeostrophic balance. The solution makes use of a local gravity current speed relation $c_{b} \,{=}\, c_b(h_b,\ldots)$ and a continuity constraint at the head to close the problem. The initial value solution links the local gravity current properties to the initiating dam-break conditions. The flow downstream of the dam consists of a rarefaction joined to a uniform gravity current with width $w_b$ (${\le}\, w$) and depth on the right-hand wall of $h_b$, terminated at the head moving at speed $c_b$. The solution gives $h_b$, $c_b$, $w_b$ and the transport of the boundary current as functions of $w/L_R$, where $L_R \,{=}\, \sqrt{g^\prime H}/f$ is the deformation radius. The semigeostrophic solution compares favourably with numerical solutions of a single-layer shallow-water model that internally develops a leading bore. Existing laboratory experiments are re-analysed and some new experiments are undertaken. Comparisons are also made with a three-dimensional shallow-water model. These show that lateral boundary friction is the primary reason for differences between the experiments and the semigeostrophic theory. The wall no-slip condition is identified as the primary cause of the experimentally observed decrease in gravity current speed with time. A model for the viscous decay is developed and shown to agree with both experimental and numerical model data.
    Description: This work was supported by NSF Grants OCE-0095059 and OCE-0132903.
    Keywords: Gravity current ; Dam-break problem
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