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  • Fungi
  • Tehran, Iran  (10)
  • Springer Nature  (1)
  • American Institute of Physics
  • 2015-2019  (11)
  • 1995-1999
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  • 1
    Publication Date: 2022-05-25
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gruen, D. S., Wolfe, J. M., & Fournier, G. P.. Paleozoic diversification of terrestrial chitin-degrading bacterial lineages. BMC Evolutionary Biology, 19, (2019): 34, doi:10.1186/s12862-019-1357-8.
    Description: Background Establishing the divergence times of groups of organisms is a major goal of evolutionary biology. This is especially challenging for microbial lineages due to the near-absence of preserved physical evidence (diagnostic body fossils or geochemical biomarkers). Horizontal gene transfer (HGT) can serve as a temporal scaffold between microbial groups and other fossil-calibrated clades, potentially improving these estimates. Specifically, HGT to or from organisms with fossil-calibrated age estimates can propagate these constraints to additional groups that lack fossils. While HGT is common between lineages, only a small subset of HGT events are potentially informative for dating microbial groups. Results Constrained by published fossil-calibrated studies of fungal evolution, molecular clock analyses show that multiple clades of Bacteria likely acquired chitinase homologs via HGT during the very late Neoproterozoic into the early Paleozoic. These results also show that, following these HGT events, recipient terrestrial bacterial clades likely diversified ~ 300–500 million years ago, consistent with established timescales of arthropod and plant terrestrialization. Conclusions We conclude that these age estimates are broadly consistent with the dispersal of chitinase genes throughout the microbial world in direct response to the evolution and ecological expansion of detrital-chitin producing groups. The convergence of multiple lines of evidence demonstrates the utility of HGT-based dating methods in microbial evolution. The pattern of inheritance of chitinase genes in multiple terrestrial bacterial lineages via HGT processes suggests that these genes, and possibly other genes encoding substrate-specific enzymes, can serve as a “standard candle” for dating microbial lineages across the Tree of Life.
    Description: This work was supported by a National Science Foundation (NSF) Graduate Research Fellowship Program Award to DSG., and Simons Collaboration on the Origins of Life Award #339603 and NSF Integrated Earth Systems Program Award #1615426 to GPF. The funding agencies for this study had no role in study design, data collection, data analysis and interpretation, or in writing the manuscript.
    Keywords: Horizontal gene transfer ; Chitinase ; Chitin ; Bacteria ; Fungi ; Arthropods
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
    Publication Date: 2021-05-19
    Description: At present, the aquaculture industry to provide proper instructions in the field of health management, including production of Specific Pathogen Free shrimp (SPF), require sensitive and reliable methods for the detection and identification of pathogenic microorganisms. Molecular methods which used in the detection of microorganisms have a high discriminatory power in the taxonomy and in relation to libraries in the world. On the other hand, the accurate identification of microorganisms, providing the genetic data bank of shrimp pathogens and maintenance of these strains is the step to promote further research on the mechanisms of pathogenesis of pathogens, diagnosis, treatment, prevention of disease, identify indigenous production kits, diagnosis re emerging and emerging diseases and their origin. Therefore, in this project, by using ribotyping technique, native isolated pathogenic bacteria and fungi were identified and recorded in the gene bank database center. During sampling of shrimp and water of Specific Pathogen Free shrimp center, 40 bacterial strains were isolated, which 8 of them had the most frequency and identification based on 16S rDNA sequencing was performed. Bacteria identified are: Vibrio nigripulchritudo strain IS013(GenBank:KP843725), Vibrio brasiliensis strain IS014 (GenBank:KR186076), Vibrio rotiferianus strain IS015 (GenBank:KR186077), Vibrio azureus strain IS012 (GenBank:KJ018724.1), Vibrio owensii strain IS016 (GenBank:KR186078), Agarivorans gilvus strain IS017 (GenBank:KR186079), Vibrio brasiliensis IS018 (GenBank:KR186080) and Vibrio alginolyticus strain IS019 (GenBank:1817854), which were recorded in The World Bank genes. In this study fungal isolates were not detected.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Bacteria ; Fungi ; Ribotyping ; 16S rDNA ; Shrimp ; Specific pathogen free ; Vibrio rotiferianus ; Vibrio owensii ; Vibrio brasiliensis ; Vibrio azureus ; Agarivorans gilvus ; Vibrio alginolyticus ; GenBank
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 64pp.
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  • 3
    Publication Date: 2021-05-19
    Description: The alarming rate of population growth has increased the demand for food production in third-world countries leading to a yawning gap in demand and supply. This has led to an increase in the number of hungry and chronically malnourished people. This situation has created a demand for the formulation of innovative and alternative proteinaceous food sources. Single cell protein production is a major step in this direction. SCP is the protein extracted from cultivated microbial biomass. Algae, fungi and bacteria are the chief sources of microbial protein that can be utilized as SCP. Produced proteins from these microbes have various nutrition values. SCP is the manufacture of cell mass using microorganisms by culturing on available agriculture, industrial wastes and fisheries by products. Fish wastes due to high protein are the most important substrates for SCP production. In this study, SCP production was done from Silver carp and tuna fish wastes (head, tail and vise versa) and cooked water of canned tuna factories. The used microbes were six genus and species of yeasts include Candida utilis, Saccharomyces cereviceae, Rhodotorula, Khyveromyces marxians, Zygosaccharomyces rouxii and Bacillus subtilis and B.licheniformis. The examination was done in bench scale and CSTR bioreactor (Continuous Stirred Tank Reactor). The effects of various parameters such as pH, temperature, time, supplemented substrates, method of inoculation of microbes, rpm were evaluated. Changes of microbial growth and protein contents were tested by using Optical Density (OD) and Makrokjeldal methods respectively. In end of examination, produced protein were extracted and lyophilized. The results showed that protein percentage in bacterial protein was than yeast protein but wet percentage in bacterial protein was low. Production value produced from tuna fish wastes was higher than (30-45 g/l) to Silver carp wastes (25-29 g/l) and cooked water (10-15 g/l). By adding supplemented substrates, production value has been increased. Candida utilis, in comparison other yeasts, has high activation. B.licheniformis has also had more activation than Bacillus subtilis. The results of the effect some parameters on fermentation showed that yeasts and Bacillus in pH= 5.4 and 32oC and pH=6.9 and 35oC were better than growth pH=6 and 25oC and pH=6.5 and 30oC respectively. Time of fermentation in batch and bioreactor was 54 and 21 hours respectively. High rpm has been caused increasing of microbial growth in bioreactor. The conclusion showed that with optimizing of the growth condition such as some parameters (pH, temperature, substrates and so on) produced SCP with high efficiency. However, produced SCP should be exanimated with other specific tests such as amino acid and fatty acid profiles, minerals, nucleic acids and so on. After full examination, this SCP as probiotic could be used in fish and poultry feed.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Single cell protein ; Marine ; Culture ; Fish wastes ; Yeast ; Bacterial ; Population ; Growth ; Biomass ; Algae ; Fungi ; Nutrition ; Candida utilis ; Silver carp ; Bacillus subtilis ; B.licheniformis ; pH ; Protein
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 132pp.
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  • 4
    Publication Date: 2021-05-19
    Description: The The Shahid Rajaei Reservoir- Sari is an important and large reservoir in Iran. The major objectives of dam instruction are flood control, irrigation purposes, and electricity power. However the dam is going to supply drinking water for the people. In order to prevent threats of unsuitable water to human health risks and economic losses, it is necessary to monitor the water quality before offering it to people. In this study, some of the physicochemical parameters and Chlorophyl- a, phytoplankton,microb and fungi of Shahid Rajaei reservoir were measured at 4 stations (Shirin Roud branch, Sefid Roud branch, the crossing point of branches, near the tower) during six sampling months (June, July, August, September, November and February) in 2012-2013. In order to water quality classification, the water quality index, trophic status, Shanoon and saproby indices of reservoir calculated and the results compared to different criteria and standards. The results showed that the mean (±Standard Error) of temperature, dissolved oxygen, pH, phosohate, amonium and nitrate concentrations and Chlorophyl a were 21.35 (±1.30) ºC, 10.48 (±0.37), 8.54 (±0.04), 0.050 (±0.004), 0.036 (±0.004), 0.75 (±0.03) mg/l and 18.00 (±7.23) mg/m3, respectively. In the present study, temperature between surface and deep layer was stratified in June and July, which the stratification was registerd 0.47 and 0.69 °C decreases with increasing of each meter depth in 15 to 30 meter culumn. But, these changes for each increasing meter of water depth were 0.2 to 0.26 °C in August and September, respectively, and finally was close to zero in November. In the warm months (July, August and September) with the formation of thermal stratification in the reservoir was formed oxygen stratification, but in the cold season (November and February), with vertical mixing of water oxygen and percent saturation of the reservoir was nearly homogeneous. TSI showed the maximum and minimum values at stations 4 (oligotrophic condition) and 2 (mesotrophic condition), respectively. The maximum and minimum monthly values of TSI obtained in July, August (eutrophic level) and September, February (oligotrophic level) respectively. Based on the Water Quality Index (WQI), the reservoir was in the “good” quality in whole months, .This class shows that the reservoir is suitable as source of drinking water through routine treatment of drinking water and the quality of water is rarely is low. Meanwhile the water is suitable for swimming and water recreation and survives of .sensitive fish and other aquatic species. Based on the results, 107 phytoplankton species were identified during the period of study. The species were classified in 8 divisions. Maximum and minimum values of mean (SE) abundance observed in July and January, 661 (±286) and 10 (±2) million cells/m3 respectively at the surface layer. The One way analysis of abundance and biomass data showed temporal significant variances (P〈 0/05), however the spatial variances of data were not significant (P〉 0/05). Bacillariophyta and Pyrrophyta formed more than 95% of phytoplankton. 3 dominant species namely, Cyclotella meneghiniana, Goniaulax polyedra and Ceratium hirundinella formed about 70% of phytoplankton aboundance. Comparison of diversity indices (Shannon and Evenness) showed higher values in May and January; however the indices reached its lowest level (0.58 and 0.16) in August. Water quality assessment using Shannon index showed the lowest quality of water (moderately to high polluted) in July and August. This index demonstrated the highest water quality (slightly polluted) at station 1 and 4 respectively. The results of the water quality assessment using Saproby index (based on the resistant phytoplankton species to organic pollution) also indicated to organic pollution of water in the months of summer. The saproby assessment in stations categorized most of the stations in “moderately polluted” class of organic pollution except at station 4 which was in "slightly polluted" class. In conclusion, the removal (transfer) place and time of water to the water treatment plants.are impratnt because of temporal and spatial variation of water quality due to changes of phytoplankton structure in Shahid Rajaee Reservoir. Meanwhile, the survey showed that physico-chemical parameters alone did not reflect the actual conditions of aquatic water bodies. Monitoring of aquatic ecosystems must be complemented by biological monitoring. Microbial survey showed that the maximum and minimum geometric mean of the total number of bacteria, in September (6101559 CFU/100ml) and February (3310 CFU/100ml) respectively. However in stations, the maximum and minimum count of this parameter obtained at stations 2 (455316 CFU/100ml) and 3 (40964 CFU/100ml) respectively. There were no viable count of total coliform in the months of May and June. However it’s counting reach to the maximum value in September. Clostridium perfrigens showed viable count in water sample during September. The results also showed no proportion of fecal streptococci in microbe account in the Shahid Rajaei Reservoir. It might be good sign of suitable water quality in term of no-contamination by old and resistant fecal microbes. Base on the total coliform count, water quality was suitable for swimming and source of drinking water in most stations and months. The coliform count increased in August and September in stations 3 and 4. In these 2 months the probability of new fecal contamination increased by warm blood animals in the reservoir. It seems that the environment in September is suitable for accession of old and resistant microbes such as Clostridium perfrigens. The results of sample analysis revealed that the fungal colony counts in the station 4 and 5 were significantly higher than those the other stations. Moreover, the minimum and maximum of the fungal colony counts wereobserved in August and February, respectively. The most commonly isolated genera were Aspergillus, yeasts (especially candida) Penicillium, Cladosporium, Mucor, Fusarium, Althernariya, sterile hyafe and Paecilomyces respectively. Finally, in order to prevent of occurrence of eutrophication, algal bloom, and control of microbial activities and organic phosphorus loading it is necessary to control the activities of the human societies around the dam or the rivers tributary.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Water Quality ; Trophic State ; Biotic ; Abiotic ; Chlorophyll-a ; Phytoplankton ; Microbe ; Fungi ; Temperature ; Dissolved oxygen ; pH ; Aquatic ; Species
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 76pp.
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  • 5
    Publication Date: 2021-05-19
    Description: The present study initially investigated on the recovery the quality of kilka fish meal during the year of 2000-2001. "Three experiments such as .temperature, pressure, time were studied and 8 formulas, the chemical and hygienic condition of the production were investigation in the period of 270 days storage. Sampling were drawn after 0, 45, 90, 135, 270 days of storage and the changes in the total count, Fungi, Aspergilus, Salmonella, Percentages of Fat, Wet, Protein, Ash ratio of Calcium to Phosphorous, Histamine Total volatile nitrogen (IVN) and peroxide value were determined. - The statistic evaluation of formulas have been shown the significant differences between 8 formulas (P 〈0.()00) as well as between formulas in pair (1 to 4m 5 to 8) which they had a significant In N conclusion. the formulas I to 4 (in pressure of atmosphere and 1000c. 1200c temperature as well 6 atmosphere indirect pressure and 1000c, 1200c in different have been recognized as the best formulas and it had been evaluated for the production of 1 grade fish meal according to standards. In this research the cooling system was used to cool the products and .using 3 layers paper bags with internal plastic layer for packing instead of simple plastic bags.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Kilka ; Fish Meal ; Temperature ; Sampling ; Fungi ; Salmonella ; Protein
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 80pp.
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  • 6
    Publication Date: 2021-05-19
    Description: In recent years, aquatic diseases have damaged aquaculture industry in different areas of the world. Although tilapias are known as resistant fish against different pathogens, but there are some reports about infectious diseases of tilapia. Tilapia aquaculture in Iran is in the beginning stage. So, planning for hygiene observations and preventing of disease prevalence must be considered. Tilapia hatchery and indoor systems of National Research Center of Saline water Aquatics were monitored for infectious disease from October 2012 to February 2014. Unusual locomotion/feeding or uncommon signs in the shape or body surface of cultured tilapias, fries and eggs or exceed mortalities were mentioned for bacterial, fungal, parasitic or viral pathogens. Infectious agents in this study were bacteria Streptococcus and Edwardsiella, the fungi Penicillium and Aspergillus and parasitic monogeneans Gyrodactylus and Dactylogyrus. No viral agent was diagnosed. Although recorded pathogens were rarely observed during the study but much attention must be paid for hygiene monitoring and instruction performance.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Tilapia ; Aquaculture ; Bacteria ; Fungi ; Parasite ; Virus ; Streptococcus ; Edwardsiella ; Penicillium ; Aspergillus ; Gyrodactylus ; Dactylogyrus
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 76pp.
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  • 7
    Publication Date: 2021-05-19
    Description: Mariculture is one of the most important sub sector fisheries industry in Asia-pacific region. There are over 40 marine fish species commonly cultured, such as groupers (Epinephlus spp.), snappers (Lutjanus spp.) and Asian sea bass (Lattes calcarifer). But this industry in Southeast Asia experienced serious disease problem since the late 1980s. Khouzestan province has a coastal line about 200 km with many Creek and suitable area for Mariculture. Marine fish culture in Khouzestan province in floating net cages was successfully initiated in Ghazaleh Creek following development of Epinephlus coioides artificial seed production in the 1372. This study has been conducted since 1384 to 1387 in Bandar-e-Imam station. The aim of this research project was to determine the health management status in cage and hatchery, identification of marine fish pathogens (Bacteria, Fungi and parasite), examination of heavy metal in cages sediment and test the physico chemical factors of water in cages and hatchery. Different parts of broodstocks body and fingerlings including intestine, gills and body surface were examined. In this study, 18 Genus and species of bacteria such as Vibrio alginolyticus, Vibrio anguillarum, Vibrio splendidus, Vibrio vulnificus, Plesiomonas shigelloides , Aeromonas hydrophila, Aeromonas caviae, Pseudomonas sp. Were diagnosed. Also 7 Genus and species of fungi such as: Aspergillus niger , Aspergillus flavus , Aspergillus fumigatus , Penicillium sp. And Fusarium sp. Were isolated. In this survey following of disease appearance parasites such as ; protozoans Amyloodinium sp. And Trichodina sp. In E.coioides and Acanthopagrus latus and Sparidentex hasta , monogean such as Benedenia sp. In E.coioides and S. hasta, isopoda probably Nerocila sp. In nasal cavity of E.coioides and copepods such as: Caligus sp. And Lernanthropus sp. In A.latus and S.hasta were identified. In this study, microorganisms (bacteria, fungi and parasites) isolated from three different marine fishes species, were reported for the first time in Iran. The range of the physico-chemical parameters of water in cages were: DO(5.42-10.24 ppm), BOD5 (1.51-10.24 ppm), No2(0.0197-0.89 ppm), No3(3.53-11.93 ppm), Po4(0.965-6.05 ppm), turbidity ( 4-58 NTU) and ammonia ( 0.0008-0.03 ppm). According to the results parameters such as nitrate, nitrite and turbidity were found more than standard levels. Heavy metals: Ni and Pb relatively high observed.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Mariculture ; Fisheries ; Species ; Epinephlus spp. ; Lutjanus spp. ; Lattes calcarifer ; Bacteria ; Fungi ; Parasite ; Aspergillus niger ; Aspergillus flavus ; Aspergillus fumigatus ; Penicillium sp. ; Fusarium sp. ; Vibrio alginolyticus ; Vibrio anguillarum ; Vibrio splendidus ; Vibrio vulnificus ; Plesiomonas shigelloides ; Aeromonas hydrophila ; Aeromonas caviae ; Pseudomonas sp. ; Grouper ; Snapper ; Sea bass
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 86pp.
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  • 8
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    Iranian Fisheries Science Research Institute | Tehran, Iran
    Publication Date: 2021-05-19
    Description: Artemia is considered as live food which can produce cysts and biomass in million tons at hatchery centers or from natural resources. Artemia can be harvested using different variety of methods and has commercial value in aquaculture industry. The quality of produced products has great effect on trading of Artemia at the world. The aim of the present study was to study the hazardous factors in order to increase the quality of Artemia urmiana based on HACCP system. The survived factors were included; biological (bacteria, fungi, yeast, parasite), chemical (Aflatoxine, Organophosphorous, Organocholor, heavy metals, structure of fatty acid, hatchingpercentage), Physical (physical damages, breakdown percentage). The experimental treatments were planned based on two separate groups comprising of without HACCP and the second one, processed with HACCP system. The main hypothesis of current study was to identify the biological, chemical, andphysical hazardous factors of Artemia urmiana based on HACCP system in order toincrease the quality value of A. urmiana cysts. The amount of humidity, protein, lipid, total ash percentage and fatty acid structure in group one (without HACCP sys.) were 45, 28, 10, 18.5 % and in the second group (with HACCP) were 41, 32, 10, 18.2 %. The results of fatty acid profile for both groups indicated in tables 2, 3, 4, and 5. The results showed no significant outcome on quality value of A. urmiana cysts. The concentration of heavy metals (Mn, Cr, Pb, Zn, Ni, Ca, and Cu) in cysts samples of group one was estimated to be 7.4, 0.04, 0.27, 0.98, 0.29, 0.02, 0.18 mg/kg ww. The amount of these elements in cysts samples of group two was 8, 0.03, 0.23, 0.81, 0.21, 0.02, 0.2 mg/kg ww. The results showed no significant outcome in the concentration of metals in group two. The amount of Alderin, Lindin, Alochlar Organophosphorous, and Aflatoxine in samples of group one was 1.25, 0.14, 0.08, and 9.8 ppb and in group two was 1.21, 0.12, 0.05, 8.9, and 0 ppb. There wasn't any significant result in samples, too. Infections of secondary bacteria, gram-positive bacillus and cocci, aspergillus, alternaria, candida were observed in cyst samples of group one. Hatching percentage and efficiency at harvesting time and after keeping for one year, decreased to 11±3 %in cysts samples of group one. It`s concluded that the processing of Artemia urmiana cysts using HACCP system will increase the quality of products and therefore prevent the transmission of secondary infections.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Critical ; Artemiana ; Artemia urmia ; Biomass ; Bacteria ; Fungi ; Yeast ; Parasite ; Aflatoxine ; Organophosphorous ; Organocholor ; Heavy metals
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 82pp.
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  • 9
    Publication Date: 2021-05-19
    Description: The present study is carried out to investigate the fungal species present in water of Shahid Rajaeii damlake in Sari, (Mazandaran province). Samples were taken from five stations including, Station 1: Input of Shirinrud river, station 2: Input of Sefidrud river, Station 3: The confluence of the two branches, Station 4: dam crest and stations 5: Output dam from June to February 2012. Every sample was diluted by sterile saline (10-1 and 10-2) and 0.5 mL from each dilution was cultured on SD and incubated at 27-30°C for 3-5 days. Finally, the number of colonies wasrecorded as (colony forming unit = CFU) per 100 mL. Identification of fungal agents were conducted by slide culture preparation and stained in lacto-phenol blue. The results showed that in August and February were significantly highest and lowest rates of fungal colonies were isolated from water in different stations respectively. Moreover, the number of fungal colonies in the crown and the output was significantly higher than other stations. The frequency of identified fungi were: Aspergillus species (31.4%), various types of yeast (mainly Candida) (24.2%), Penicillium sp. (19.3%), Cladosporium sp.(10.3%), Mucor sp. (5.4%), Fusarium sp. (2.9%), sterile hype (2.8%), Alternaria sp. (2.3%) and Paecilomyces sp. (1.4%).
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Evaluation ; Identification ; Fungi ; Fungal ; Species ; Samples ; Aspergillus ; Penicillium sp. ; Cladosporium sp. ; Mucor sp. ; Fusarium sp. ; Alternaria sp. ; Paecilomyces sp.
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 42pp.
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  • 10
    Publication Date: 2021-05-19
    Description: Carp fishes culture is one of the most important subsector fisheries industry in Khouzestan province. Every year in summer high mortality occurred in carp fishes farms specially in silver carp of north Khouzestan province. Inspection of silver carp for identification microorganisms agents (Bacteria, Fungi, Parasite and virus: SVC,KHV), determine total plate count, examination physic chemical factors of farms water, histopathology, identification planktons, the main objectives of this study, which was held in 2012. 180 silver carp from 5 farms (10 ponds) with high mortality in years ago were collected in north Khouzestan province and then differents parts of fish body including: intestine, gills, body surface, eyes and liver were examined. Physico chemical parameters and plankton sampled monthly. Physico chemical parameters of water were measured all over culture period for 960 times as follows: Do(4.45-8.5 ppm), BOD5(1.1-9.25 ppm), temp(19-33•c), pH(6.82-8.6), total hardness(348-10053), turbidity(5-56 FTU), Amonia(0.001- 0.06 ppm) and co2( 0.88-13.2). From a total 180 fish examined, 136 (75%) showed unknown algae infestation and 126 (70%) showed parasitic (Dactylogyrus, Gyrodactylus and metacercaria Diplostomum). The results of biotic parameters in farms showed that cyanophycae (Cylindropermopsis, Merismopedia and Nitzeshia) were the most group of phytoplanktons. Histopathological studies have shown necrosis in tobules kidney, degeneration hepatocyte and hyperplasia in gill cells and also results demonstrated the mean of total plate count (0-376 CFU/ml103). 60 samples with sighn severe hemorrhagic on surface body were collected for virology studies by PCR procedure (IQ2000 kit) and have shown which 3 sample suspected to KHV but SVC was not identified.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Silver Carp ; Water physic chemical factor ; Microorganisms ; Histopathology ; Fresh water ; Mortality ; Fisheries ; Bacteria ; Fungi ; Parasite ; Virus ; Planktons ; Dactylogyrus ; Gyrodactylus ; Cyanophycae ; Cylindropermopsis ; Nitzeshia ; PCR
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 110pp.
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  • 11
    Publication Date: 2021-05-19
    Description: The introduction of L. vannamei to Iran from Hawaii was initiated when high mortality occurred in shrimp farms of Abadan in 2002 then in Bushehr during summer of 2004. Inspection of L. vannamei for infectious agents (Bacteria , virus , fungi and parasite ) , determine total plate count and total vibrio in Bahmanshir Rivers, shrimps and farms water , examination physicochemical factors of farms water , Identification of carriers of wssv in wild shrimp and crabs , the main objectives of this study , which was held in 2007 . 540 shrimp samples (pl12 pl15) and subadults were collected from different shrimp farms in khouzestan province and then check for identity bacteria, fungi and parasite. Also 280 samples of L. vannamei , wild shrimps ( Metapenaeus af inis , Exopalaemon styliferus ) and crabs (Grapsus sp .and Sesarma sp. ) were Collected from Bahmanshir river for virology studies by PCR procedure (Iq2000 kit WSSV , IHHNV , TSV ) . 120 samples of L. vannamei for histopathology had been collected randomly and preserved in Davidson’s fixation and then transferred to 75% ethyl alcohol for storage. (Hepatopancreas gills). Physicochemical parameters of water in culture ponds comprising of pH DO, BOD, NO3, NO2, salinity. Total. Hardness and NH3 were measured all over culture period for 340 times. Finally it has been detected 10 genus and species of bacteria consisting of V . alginolyticus, V. parahaemolyticus, V. proteolyticus , plesiomonas shigelloides ; 6 genus and species of fungi specially Aspergilus niger , Asp.fumigatus and Asp.flavus and two genus of parasites vorticella sp. And Zoothamnium sp. were isolated. Crab (Sesarma sp.) were tested by using Iq2000 diagnostic kit for WSSV that positive for WSSV. There was a positive result (three viruses TSV, IHHNV and WSSV) for postlarvae and subadults of L.vannamei by using Iq2000 kit and IFRO kit (Internal kit). Histopathological studies have shown inclusion bodies of TSV, WSSV, IHHNV, MBV and HPV in various tissues. Results demonstrated the mean of vibrio count (0. 01×103 - 1.96 ×103) and tolal plate count (0 .21 ×103 - 14.25 ×10 3). physicochemical parameters of water were measured as follows : salinity (12.3 22.5 ppt ).BOD5 ( 1.98 10.21 ppm ) , DO (3.17 11.25 ppm ) , NH3(0.02 3.45 ppm ) and temperature (20 31. 5 c) . Keywords: L.vannamei, bacteria, virus, fungi, parasite Histo pathology - physicochemical parameters of water- Abadan khouzestan province.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Virology ; Histopathology ; L.Vannamei ; Bacteria ; Virus ; Fungi ; Parasite ; Histopathology ; Physicochemical parameters of water ; Mortality ; Shrimp ; Metapenaeus affinis ; Exopalaemon styliferus ; Grapsus sp. ; Sesarma sp. ; Aspergilus niger ; Asp. Fumigatus ; Asp. Flavus ; Temperature
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 78pp.
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