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  • American Meteorological Society  (124)
  • Wiley-AGU  (46)
  • American Chemical Society
  • Wiley-Blackwell
  • 2020-2023  (185)
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  • 1
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    Differences in Leaf Chemistry and Glandular Trichome Density between Wild Southwestern American Hop ( Humulus neomexicanus ) and Commercial Hop Cultivars (2021)
    American Chemical Society
    In:  Journal of Agricultural and Food Chemistry, 69 (27). pp. 7798-7814.
    Details
    Publication Date: 2022-01-07
    Description: The female flowers (“cones”) of the hop plant (Humulus L.) produce compounds that contribute to the flavor and other properties of beer. Hop leaves and cones produce many of the same compounds, which also confer agronomic traits such as insect and disease resistance. Targeted and untargeted ultraperformance liquid chromatography-quadrupole time-of-flight–mass spectrometry with Waters MSE technology (UPLC-QTof-MSE) metabolomics were used to compare leaf phytochemical compositions of greenhouse-grown southwestern American wild Humulus neomexicanus (A. Nelson and Cockerell) Rydb. against a group of commercial hop cultivars consisting of both pure European Humulus lupulus L. and European–North American hybrids. Principal component analysis showed a clear distinction in chemical profiles between the two groups. H. neomexicanus leaves had a significantly higher content of total α acids (p = 4.4 × 10–9), total bitter acids (p = 2.6 × 10–6), cohumulone (p = 1.0 × 10–13), humulone + adhumulone (p = 9.1 × 10–4), and the prenylflavonoids xanthohumol (p = 0.013) and desmethylxanthohumol (p = 0.029) as well as significantly higher densities of glandular trichomes (p = 1.3 × 10–6), the biosynthetic site of those compounds. Most flavonol glycosides measured were also significantly more abundant in H. neomexicanus (p = 1.5 × 10–22 to 0.0027), whereas phenolic acids were consistently, but generally nonsignificantly (p 〉 0.05), more abundant in the cultivars. The higher bitter acid, prenylflavonoid, and flavonol glycoside content of H. neomexicanus leaves may help to confer more favorable insect and disease-resistance properties.
    Type: Article , PeerReviewed
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  • 2
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    Genetic and Biochemical Reconstitution of Bromoform Biosynthesis in Asparagopsis Lends Insights into Seaweed Reactive Oxygen Species Enzymology (2020)
    American Chemical Society
    In:  ACS Chemical Biology, 15 (6). pp. 1662-1670.
    Details
    Publication Date: 2022-01-07
    Description: Marine macroalgae, seaweeds, are exceptionally prolific producers of halogenated natural products. Biosynthesis of halogenated molecules in seaweeds is inextricably linked to reactive oxygen species (ROS) signaling as hydrogen peroxide serves as a substrate for haloperoxidase enzymes that participate in the construction these halogenated molecules. Here, using red macroalga Asparagopsis taxiformis, a prolific producer of the ozone depleting molecule bromoform, we provide the discovery and biochemical characterization of a ROS-producing NAD(P)H oxidase from seaweeds. This discovery was enabled by our sequencing of Asparagopsis genomes, in which we find the gene encoding the ROS-producing enzyme to be clustered with genes encoding bromoform-producing haloperoxidases. Biochemical reconstitution of haloperoxidase activities establishes that fatty acid biosynthesis can provide viable hydrocarbon substrates for bromoform production. The ROS production haloperoxidase enzymology that we describe here advances seaweed biology and biochemistry by providing the molecular basis for decades worth of physiological observations in ROS and halogenated natural product biosyntheses.
    Type: Article , PeerReviewed
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  • 3
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    Iron Acquisition Systems of Gram-negative Bacterial Pathogens Define TonB-Dependent Pathways to Novel Antibiotics (2021)
    American Chemical Society
    In:  Chemical Reviews, 121 (9). pp. 5193-5239.
    Details
    Publication Date: 2022-01-07
    Description: Iron is an indispensable metabolic cofactor in both pro- and eukaryotes, which engenders a natural competition for the metal between bacterial pathogens and their human or animal hosts. Bacteria secrete siderophores that extract Fe3+ from tissues, fluids, cells, and proteins; the ligand gated porins of the Gram-negative bacterial outer membrane actively acquire the resulting ferric siderophores, as well as other iron-containing molecules like heme. Conversely, eukaryotic hosts combat bacterial iron scavenging by sequestering Fe3+ in binding proteins and ferritin. The variety of iron uptake systems in Gram-negative bacterial pathogens illustrates a range of chemical and biochemical mechanisms that facilitate microbial pathogenesis. This document attempts to summarize and understand these processes, to guide discovery of immunological or chemical interventions that may thwart infectious disease.
    Type: Article , PeerReviewed
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  • 4
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    Mass Spectrometry-Based Metabolomics Reveals a Concurrent Action of Several Chemical Mechanisms in Arabidopsis-Fusarium oxysporum Compatible and Incompatible Interactions (2020)
    American Chemical Society
    In:  Journal of Agricultural and Food Chemistry, 68 (51). pp. 15335-15344.
    Details
    Publication Date: 2022-01-07
    Description: Fusarium oxysporum is a destructive root-infecting plant pathogen that causes significant yield losses in many economically important crop species. Hence, a deeper understanding of pathogen infection strategies is needed. With liquid chromatography-tandem mass spectrometry and gas chromatography-time of flight mass spectrometry platforms, we analyzed the metabolic changes in a time-course experiment with Arabidopsis accessions either resistant (Col-0) or susceptible (Ler-0) to isolates of Fusarium oxysporum forma specialis matthioli infection. We showed a concurrent effect of Fusarium-derived polyols and the mycotoxin beauvericin in the suppression of the immune response of susceptible hosts. A significant increase in oxidized glutathione in the resistant host was probably associated with effective reactive oxygen species-mediated resistance responses. Through a combination of targeted and untargeted metabolomics, we demonstrated the concurrent action of several Arabidopsis defense systems as well as the concurrent action of several virulence systems in the fungal attack of susceptible Arabidopsis.
    Type: Article , PeerReviewed
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  • 5
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    Synthase-Selective Exploration of a Tunicate Microbiome by Activity-Guided Single-Cell Genomics (2021)
    American Chemical Society
    In:  ACS Chemical Biology .
    Details
    Publication Date: 2022-01-07
    Description: While thousands of environmental metagenomes have been mined for the presence of novel biosynthetic gene clusters, such computational predictions do not provide evidence of their in vivo biosynthetic functionality. Using fluorescent in situ enzyme assay targeting carrier proteins common to polyketide (PKS) and nonribosomal peptide synthetases (NRPS), we applied fluorescence-activated cell sorting to tunicate microbiome to enrich for microbes with active secondary metabolic capabilities. Single-cell genomics uncovered the genetic basis for a wide biosynthetic diversity in the enzyme-active cells and revealed a member of marine Oceanospirillales harboring a novel NRPS gene cluster with high similarity to phylogenetically distant marine and terrestrial bacteria. Interestingly, this synthase belongs to a larger class of siderophore biosynthetic gene clusters commonly associated with pestilence and disease. This demonstrates activity-guided single-cell genomics as a tool to guide novel biosynthetic discovery.
    Type: Article , PeerReviewed
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  • 6
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    Duvalo “Volcano” (North Macedonia): A Purely Tectonic‐Related CO2 Degassing System (2022)
    Wiley-AGU
    Details
    Publication Date: 2022-04-01
    Description: Duvalo “volcano” is a site of anomalous geogenic degassing close to Ohrid (North Macedonia) not related to volcanic activity, despite its name. CO2 flux measurements made with the accumulation chamber (321 sites over ∼50,000 m2) showed fluxes up to nearly 60,000 g m−2 d−1, sustaining a total output of ∼67 t d−1. Soil gas samples were taken at 50 cm depth from sites with high CO2 fluxes and analyzed for their chemical and isotope composition. The gas is mainly composed by CO2 (〉90%) with significant concentrations of H2S (up to 0.55%) and CH4 (up to 0.32%). The isotope compositions of He (R/RA 0.10) and of CO2 (δ13C ∼ 0‰) exclude significant mantle contribution, while δ13C-CH4 (∼−35‰) and δ2H-CH4 (∼−170‰) suggest a thermogenic origin for CH4. The area is characterized by intense seismic activity and Duvalo corresponds to an active tectonic structure bordering the Ohrid graben. The production of H2S within the stratigraphic sequence may be explained by thermochemical reduction of sulfate. The uprising H2S is partially oxidized to sulfuric acid that, reacting with carbonate rocks, releases CO2. The tectonic structure of the area favors fluid circulation, sustaining H2S production and oxidation, CO2 production and allowing the escape of the gases to the atmosphere. In the end, Duvalo represents a tectonic-related CO2 degassing area whose gases originate mostly, if not exclusively, in the shallowest part of the crust (〈10 km). This finding highlights that even systems with trivial mantle contribution may sustain intense CO2 degassing (〉1,000 t km−2 d−1).
    Description: Published
    Description: e2021GC010198
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Keywords: Geogenic degassing ; CO2 fluxes ; 04. Solid Earth
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 7
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    Fault Planes, Fault Zone Structure and Detachment Fragmentation Resolved With High‐Precision Aftershock Locations of the 2016–2017 Central Italy Sequence (2022)
    Wiley-AGU
    Details
    Publication Date: 2022-03-02
    Description: Three devastating earthquakes of MW ≥ 5.9 activated a complex system of high-angle normal, antithetic, and sub-horizontal detachment faults during the 2016–2017 central Italy seismic sequence. Waveform cross-correlation based double-difference location of nearly 400,000 aftershocks illuminate complex, fine-scale structures of interacting fault zones. The Mt. Vettore–Mt. Bove (VB) normal fault exhibits wide and complex damage zones, including a system of bookshelf faults that intersects the detachment zone. In the Laga domain, a comparatively narrow, shallow dipping segment of the deep Mt. Gorzano fault progressively ruptures through the detachment zone in four subsequent MW ∼ 5.4 events. Reconstructed fault planes show that the detachment zone is fragmented in four sub-horizontal, partly overlaying shear planes that correlated with the extent of the mainshock ruptures. We find a new, deep reaching seismic barrier that coincides with a bend in the VB fault and may play a role in controlling rupture evolution.
    Description: Published
    Description: e2021GL092918
    Description: 4T. Sismicità dell'Italia
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 8
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    Comment on “Fragmentation of the Adriatic Promontory: New Chronological Constraints From Neogene Shortening Rates Across the Southern Alps (NE Italy)” by Moulin & Benedetti (2022)
    Wiley-AGU
    Details
    Publication Date: 2022-04-29
    Description: Moulin and Benedetti (2018), https://doi.org/10.1029/2018tc00495810.1029/2018tc004958 present a new interpretation of the Neogene-Quaternary tectonic evolution of the Eastern Southern Alps (ESA) in Friuli. After the reinterpretation of literature field data by means of remote sensing analysis (Digital Elevation Model interpretation), they calculated deformation rates of the tectonic structures through age interpretation of geomorphological surfaces of the Veneto-Friuli piedmont plain. The authors linked the result of surface analysis to the thrust and fold architecture of the ESA basing on the Castellarin et al. (2006), https://doi.org/10.1016/j.tecto.2005.10.013 interpretation of TRANSALP project and the Friuli geological map at the scale 1:150,000 (Carulli, 2006). Discussing their new architecture of the ESA, the Authors finally yielded rates of Europe-Adria plates convergence and suggest fragmentation of Adria over the last 1–2 Ma. The present comment is aimed at discussing several critical points concerning: the use of the geomorphological and chronological data; the misinterpretation of the Digital Terrain Model; the reconstruction of the balanced geological cross section. Moreover, the application of a structural model defined in a certain area to another without considering peculiar structural complexities available in the literature results is geologically and methodologically questionable.
    Description: Published
    Description: e2019TC005696
    Description: 2T. Deformazione crostale attiva
    Description: JCR Journal
    Keywords: Comment ; active tectonics ; NE Italy ; Eastern Southern Alps ; Geodynamics ; 04.07. Tectonophysics ; 04.04. Geology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 9
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    Tephra Fallout Probabilistic Hazard Maps for Cotopaxi and Guagua Pichincha Volcanoes (Ecuador) With Uncertainty Quantification (2022)
    Wiley-AGU
    Details
    Publication Date: 2022-05-03
    Description: Tephra fallout hazard assessment is undertaken with probabilistic maps that rely on numerical models. Regarding maps production, the input parameters of the model (including atmospheric conditions), the physical approximations of the numerical simulations, and the probabilities of occurrence of different eruption types in specific time frames are among the most critical sources of uncertainty. We therefore present a tephra fallout hazard assessment study for two active volcanoes (Cotopaxi and Guagua Pichincha) in Ecuador. We utilize PLUME-MoM/HYSPLIT models, and a procedure for uncertainty quantification where: (a) the uncertainty on eruptive source parameters and eruption type occurrence is quantified through expert elicitation; (b) we implement a new procedure for correlations between the different parameters, and (c) we use correction coefficients to take into account the uncertainty of the numerical model. Maps of exceedance probability given a deposit thickness threshold, and thickness maps given a probability of exceedance, are produced (a) for two eruptive scenarios (sub-Plinian and Plinian) and (b) as a combination of these scenarios in case the next eruption will be sub-Plinian or Plinian. These maps are described according to the uncertainty distribution of eruption type occurrence probabilities, considering their 5th percentile, mean, and 95th percentile values. We finally present hazard curves describing exceeding probabilities in 10 sensitive sites within the city of Quito. Additional information includes the areal extent and the population potentially affected by different isolines of tephra accumulation. This work indicates that full uncertainty quantification helps in providing more robust scientific information, improving the hazard assessment reliability.
    Description: Published
    Description: e2021JB022780
    Description: 6V. Pericolosità vulcanica e contributi alla stima del rischio
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 10
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    Latitudinal structure of the meridional overturning circulation variability on interannual to decadal time scales in the North Atlantic Ocean (2020)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2020. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 33(9), (2020): 3845-3862, doi:10.1175/JCLI-D-19-0215.1.
    Description: The latitudinal structure of the Atlantic meridional overturning circulation (AMOC) variability in the North Atlantic is investigated using numerical results from three ocean circulation simulations over the past four to five decades. We show that AMOC variability south of the Labrador Sea (53°N) to 25°N can be decomposed into a latitudinally coherent component and a gyre-opposing component. The latitudinally coherent component contains both decadal and interannual variabilities. The coherent decadal AMOC variability originates in the subpolar region and is reflected by the zonal density gradient in that basin. It is further shown to be linked to persistent North Atlantic Oscillation (NAO) conditions in all three models. The interannual AMOC variability contained in the latitudinally coherent component is shown to be driven by westerlies in the transition region between the subpolar and the subtropical gyre (40°–50°N), through significant responses in Ekman transport. Finally, the gyre-opposing component principally varies on interannual time scales and responds to local wind variability related to the annual NAO. The contribution of these components to the total AMOC variability is latitude-dependent: 1) in the subpolar region, all models show that the latitudinally coherent component dominates AMOC variability on interannual to decadal time scales, with little contribution from the gyre-opposing component, and 2) in the subtropical region, the gyre-opposing component explains a majority of the interannual AMOC variability in two models, while in the other model, the contributions from the coherent and the gyre-opposing components are comparable. These results provide a quantitative decomposition of AMOC variability across latitudes and shed light on the linkage between different AMOC variability components and atmospheric forcing mechanisms.
    Description: The authors gratefully acknowledge support from the Physical Oceanography Program of the U.S. National Science Foundation (Awards OCE-1756143 and OCE-1537136) and the Climate Program Office of the National Oceanic and Atmospheric Administration (Award NA15OAR4310088). Gratitude is extended to Claus Böning and Arne Biastoch who shared ORCA025 output. S. Zou thanks F. Li, M. Buckley, and L. Li for helpful discussions. We also thank three anonymous reviewers for helpful suggestions.
    Keywords: Deep convection ; Ocean circulation ; Thermocline circulation
    Repository Name: Woods Hole Open Access Server
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