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  • Articles  (66)
  • crystal structure
  • Springer  (66)
  • 2020-2023
  • 1995-1999  (66)
  • 1960-1964
  • 1945-1949
  • Chemistry and Pharmacology  (66)
  • 1
    Electronic Resource
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    Springer
    Journal of applied electrochemistry 28 (1998), S. 559-563 
    ISSN: 1572-8838
    Keywords: electroless Ni–Co–B alloy ; dimethylamineborane ; complexing agent ; deposition rate ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Electrical Engineering, Measurement and Control Technology
    Notes: Abstract Fundamental aspects of electroless Ni–B, Co–B and Ni–Co–B alloys have been systematically examined. The composition, crystal structure and deposition rate of the alloys were determined as a function of the concentration of reducing agent (dimethylamineborane) and complexing agents (tartrate, citrate, malonate and succinic acid), bath pH and Ni2+/Co2+ ratio. Changes in the deposition rate and metallurgical features of the alloys induced by the change in plating parameters are discussed, based on electrochemical polarization data and the formation enthalpy of the nickel and cobalt borides.
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  • 2
    Electronic Resource
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    Journal of thermal analysis and calorimetry 50 (1997), S. 569-586 
    ISSN: 1572-8943
    Keywords: crystal structure ; metal(II) picolinate and quinaldinate ; thermal degradation of imidazole and pyrazole complexes
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Complexes of the type M(Pa)2(HAz)2 and M(QA)2(HAz)2 (M=cobalt(II) and nickel(II); HPa=picolinic acid, HQa=quinaldic acid; HAz=azoles like imidazole (Him), pyrazole (HPz), benzimidazole (HBzIm) etc.) show a similar thermal behaviour. In the first step of decomposition the corresponding azolinium picolinates or quinaldinates (H2AzPa, H2AzQa) are split off with formation of polymeric mixed ligand complexes M(Pa)(Az) or M(Qa)(Az). X-ray analysis of Co(Qa)2(HBzIm)2 XIIIa illustrates a proton transfer and a subsequent thermal removal of benzimidazolinium quinaldinate (H2BzImQa): Hydrogen bridges from pyrrole nitrogen of the benzimidazole to the non-coordinated oxygen of the quinaldinate predetermine the thermal initiated proton transfer. The high volatility of the heterocyclic acids and the nitrogen coordination are responsible for the formation of the mixed ligand complex Co(Qa)(BzIm) XIVa. Exceptions are the complexes M(Pa)2(HPz)2 XIa-b and M(Qa)2(HIm)2 XVIIa-b. Pyrazole is eliminated from the complexes XIa-b with formation of the solvent-free inner complex M(Pa)2 XIIa-b. From compounds XVIIIa-b quinaldic acid or their decomposition products are split off and a high temperature modification of M(Im)2 XVIIIa-b is formed at elevated temperature. XVIIIa-b are decomposed to the cyanides M(CN)2 similarly to the thermal behaviour of Cu(Im). In the first step the thermal degradation of imidazole and pyrazole adducts of copper(II) picolinates and quinaldinates is characterized by the elimination of azoles. The reason for this thermal behaviour is the weaker coordination of the azole heterocycles in copper chelate compounds.
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  • 3
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    Journal of thermal analysis and calorimetry 55 (1999), S. 797-806 
    ISSN: 1572-8943
    Keywords: cadmium coordination ; crystal structure ; enthalpy of solution ; lattice energy ; lattice enthalpy ; NTO salt ; preparation ; standard enthalpy of dehydration ; standard enthalpy of formation ; thermal decomposition mechanism
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract [Cd(NTO)4Cd(H2O)6]·4H2O was prepared by mixing the aqueous solution of 3-nitro-1,2,4-triazol-5-one and cadmium carbonate in excess. The single crystal structure was determined by a four-circle X-ray diffractometer. The crystal is monoclinic, space group C2/c with crystal parameters of a=2.1229(3) nm, b=0.6261(8) nm, c=2.1165(3) nm, β=90.602(7)°, V=2.977(6) nm3, Z=4, Dc=2.055 g·cm−3, μ=15.45 cm−1, F(000)=1824, λ(MoKα)=0.071073 nm. The final R is 0.0282. Based on the results of thermal analysis, the thermal decomposition mechanism of [Cd(NTO)4Cd(H2O)6]·4H2O was derived. From measurements of the enthalpy of solution of [Cd(NTO)4Cd(H2O)6]·4H2O in water at 298.15 K, the standard enthalpy of formation, lattice energy, lattice enthalpy and standard enthalpy of dehydration have been determined as -(1747.8±4.8), -2394, -2414 and 313.6 kJ mol−1 respectively.
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  • 4
    ISSN: 1572-9001
    Keywords: Tetrahydrotetrol ; polycyclic aromatic hydrocarbon derivative ; carcinogen ; crystal structure ; structure-activity relationship
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The molecular structures of two racemic trans-tetrahydrotetrols formed by hydrolysis of the (±)anti-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydro derivatives of the strong carcinogen benzo[a]pyrene and the weak carcinogen chrysene have been determined by X-ray crystallographic methods.3 Focusing on the (+)isomers, the stereochemical features of the two tetrols are discussed in detail to determine structural differences, which can be related to the different biological activity of their parent hydrocarbons, since they provide a model for the hydrocarbon moiety in the major PAH-DNA adduct. As a result of this study, a tentative correlation can be stated between biological activity of quasi-planar bay-region PAHs and the presence of structural features, which can decrease the steric hindrance of the aromatic skeleton and the other hydroxy groups on the pseudo-axial O4, which mimics the position of the covalent bond to DNA. The significant structural features seem to be an out-of-plane distortion with a negative torsion angle at the bay region and a half chair conformation of the saturated ring distorted toward the envelope with C8 at the tip as in BPT, in addition to the axial and pseudo-axial conformations of the hydroxy groups at C9 and C10 due to the near bay region. They may be considered generated by trans-opening of the oxirane ring in an anti-diol epoxide biologically active because it is highly strained. The strains, derived from the activation of bay-region PAHs with a negative torsion angle, seem greater in an anti-diol epoxide relative to the syn-isomer. Thus, when the strains are released, the derived trans-tetrol occurs with structural features, which seem to better fit the target. As a consequence, the presence of a methyl group at a bay region should increase the biological activity of a PAH, imposing greater strains to the structure of the anti-diol epoxide.
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  • 5
    ISSN: 1572-9001
    Keywords: Cobalt complexes ; potassium squarate ; crystal structure ; molecular structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Compound (I), idealized as Br4Co3O14N8C16H41 (see text), crystallizes in the triclinic space groupP¯ 1 (No. 2) with cell constants ofa=7.4470(7),b=7.9648(4),c=15.2223(8),α=96.338(4)ℴΒ=93.504(6)ℴ,γ=112.894(6)ℴ,V=821.328 å3, and d(calc; MW=1065.97,z=1)=2.155 gm-cm−3. Data (3880 total reflections) were collected over the range 2ℴ ≤ 2θ ≤ 55ℴ and corrected for absorption (Μ=63.69 cm−1) using data from Psi scans. The unexpectedly isolated compound contains a [cis-Co(en)2Br(OH)]+ cation, while the anion contains a central Co(III) surrounded by two mondentate,trans-squarato ligands, twotrans-hydroxo, and two waters. The waters and hydroxy ligands were identified by determining, experimentally, the presence and positions of their respective hydrogens. Given the need for overall electroneutrality, one squarato ligand must be a dianion (Sq2−) and the other a monoanion (SqH−); however, since the ion bearing the squarato ligands sits at an inversion center, the hydrogen of the latter must be disordered. Refinement of the heavy atoms with anisotropic thermal parameters and fixed hydrogen positions (B's fixed at) led to the finalR(F) andR W(F) factors of 0.036 and 0.042, respectively. (I) was obtained during efforts to prepare [Co(en)2(squarate)]Br by the displacement of two chloro ligands from the coordination sphere of [cis-Co(en)2Cl2]Cl by K2 (squarate) followed by addition of NaBr. Compound (I) appears to be the first example of a coordination compound in which squarate2− and squarate H− anions are present as ligands to a transition metal ion. A search of the Cambridge file (to 1992) produced no known examples of Co(III) squarates. Thus, (I) appears to also be the first example of its kind.
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  • 6
    ISSN: 1572-9001
    Keywords: MM3 ; PM3 ; MMX ; crystal structure ; norbonadienone ; distorted compound
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The reaction of 4,5-didehydroacenaphthene with phencyclone yields the title compound, a stable dibenzo-fused norbornadienone (8). The X-ray structure of8 is presented and compared with the structure predicted from a MM3, PM3, and a MMX calculation. Thermal decomposition of 8 produces, 7,16-diphenylcyclopenta[d,e]tribenzo[a,h,j]anthracene (9), a hydrocarbon that is computed to have a significantly twisted polycyclic aromatic skeleton with 19 kcal/mole of strain energy.
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  • 7
    ISSN: 1572-9001
    Keywords: Protected tripeptide ; solution structure ; crystal structure ; X-ray analysis ; NMR analysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The solid-state structure of Boc-Gly-Trp-Ala-OBut was determined by single-crystal X-ray diffraction analysis. The tripeptide gave crystals belonging to the orthorhombic systemP212121 and at 122.0(5) K:a=11.0663(12),b=14.107(2),c=17.275(2) Å,V=2697.0(5) Å3Z=4,R(F)=0.0259, andR w(F)=0.0695. The peptide adopts a type-Iβ-turn in the solid state with a single, rather weak, intramolecular hydrogen bond between the Boc-CO and Ala-NH groups (N⋯O 3.082(1) Å, 〈NH⋯O 167(1)°). The conformation of the Boc-Gly-Trp-Ala-OBut peptide has also been studied by1H NMR spectroscopy. The solvent and temperature dependencies of NH chemical shifts suggests that this hydrogen bond is broken and that all amide protons are solvent exposed in CDCl3 and (CD3)2SO.
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  • 8
    ISSN: 1572-9001
    Keywords: 1-Acetyl-indoline ; crystal structure ; electronic structure ; AM1 calculation ; CI calculation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The crystal and molecular structures of the following molecules have been determined: 1-acetyl-indoline, 1-acetyl-5-nitro-indoline, l-acetyl-5-nitro-7-bromo-indoline, 1-acetyl-5-bromo-7-nitroindoline, and l-acetyl-5-bromo-7-nitro-indol. Molecular orbital calculations are performed for these compounds and two related species.
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  • 9
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    Journal of thermal analysis and calorimetry 46 (1996), S. 719-731 
    ISSN: 1572-8943
    Keywords: aromatic polyimide fiber ; as-spun fiber ; crystallization ; crystal structure ; crystal unit cell ; draw ratio ; dry-jet wet spinning ; isotropic solution ; modulus ; self-elongation ; tensile strength ; thermal shrinkage stress ; thermal shrinkage strain ; thermomechnical analysis ; triclinic ; wide angle X-ray diffraction ; zone drawing
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Three aromatic polyimides based on 3,3′,4,4′-biphenyl-tetracarboxylic dianhydride (BPDA) and three different diamines 2,2′-bis(trifluoromethyl)-4,4′-diaminobiphenyl (PFMB), 2,2′-dimethyl-4, 4′-diaminophenyl (DMB) or 3,3′-dimethylbenzidine (OTOL) have been synthesized. These polyimides are soluble in hotp-chlorophenol,m-cresol or other phenolic solvents. Fibers have been spun from isotropic solutions using a dry-jet wet spinning method. The as-spun fibers generally exhibit low tensile properties, and can be drawn at elevated temperatures (〉380° C) up to a draw ratio of 10 times. Remarkable increases in tensile strength and modulus are achieved after drawing and annealing. The crystal structures of highly drawn fibers were determinedvia wide angle X-ray diffraction (WAXD). The crystal unit cell lattices have been determined to be monoclinic for BPDA-PFMB and triclinic for both BPDA-DMB and BPDA-OTOL. Thermomechanical analysis (TMA) was used to measure thermal shrinkage stress and strain. A selfelongation has been found in the temperature region around 450°C. This phenomenon can be explained as resulting from the structural development in the fibers as evidencedvia WAXD observations.
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  • 10
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    Journal of thermal analysis and calorimetry 57 (1999), S. 807-821 
    ISSN: 1572-8943
    Keywords: bibliography ; critical temperature ; crystal structure ; CuRh2S4 ; CuRh2Se4 ; survey of chalcogenide superconductors
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The thread that runs through all research in the field of superconductivity is new physics through discovery of new materials. The knowledge of superconducting materials has become voluminous and complex. The comprehensive review of the superconducting materials is of particular importance. The main purpose of this report is to present the results of classification for chalcogenide superconductors. Superconducting critical temperature Tc, crystal-structure type and the references proper to these compounds are summarized. Brief survey of the superconductivity in chalcogen elements is also given. Furthermore, as representative sulfide and selenide, superconducting characteristics of CuRh2S4 and CuRh2Se4 will be shown.
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  • 11
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    Journal of thermal analysis and calorimetry 58 (1999), S. 257-267 
    ISSN: 1572-8943
    Keywords: crystal structure ; lattice energy ; lattice enthalpy ; lead salt of NTO ; preparation ; quantum chemical calculation ; thermal decomposition mechanism
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The single crystal of lead salt of 3-nitro-1,2,4-triazol-5-one (NTO), [Pb(NTO)2(H2O)] was prepared and its structure was determined by a four-circle X-ray diffractometer. The crystal is monoclinic, its space group is P21/n with crystal parameters of a=0.7262(1) nm, b=1.2129(2) nm, c=1.2268(3) nm, β=90.38(2)°, V=1.0806(2) nm3, Z=4, Dc=2.97 g cm−3, µ=157.83cm−1, F(000)=888. The final R is 0.027. By using SCF-PM3-MO method we obtained optimized geometry for [Pb(NTO)2⋅H2O] and particularly positions for hydrogen atoms. Through the analyses of MO levels and bond orders it is found that Pb atom bond to ligands mainly with its 6pz and 6py AOs. The thermal decomposition experiments are elucidated when [Pb(NTO)2⋅H2O] is heated, ligand water is dissociated first and NO2 group has priority of leaving. Based on the thermal analysis, the thermal decomposition mechanism of [Pb(NTO)2⋅H2O] has been derived. The lattice enthalpy and its lattice energy were also estimated.
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  • 12
    ISSN: 1572-8951
    Keywords: hydrogen bond ; ferrocenyl carbonyl proanoic ; supermolecule ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Selective recognition in the title compound, (C14H14FeO3)2 ċ (C10H8N2), between ferrocenyl carbonyl propanoic acid and 4,4'-bipyridine through strong O–-HċN intermolecular hydrogen bonds results in a novel supramolecular architecture. Its crystal structure has been solved by single-crystal X-ray diffraction methods while its characterization has been studied by IR and DSC.
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  • 13
    ISSN: 1572-9001
    Keywords: Nickel complex ; dithiocarbimate ; sulfonamide ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Potassium N-4-methylphenylsulfonyldithiocarbimate, K2(4-CH3C6H4SO2N=CS2), reacted with nickel(II) chloride hexahydrate and tetrabutylammonium bromide to form the bis(N-4-methylphenylsulfonyldithiocarbimate)nickelate(II) tetrabutylammonium salt (Bu4N)2[Ni(4-CH3C6H4S2C=NSO2)2]. The elemental analyses, IR and UV-Vis data obtained were consistent with the formation of a $${\text{nickel}}{\kern 1pt} - {\kern 1pt} {\text{sulfur}}$$ diamagnetic planar complex. The 1H NMR and the 13C NMR spectra showed the expected signals for the dithiocarbimate moiety and the tetrabutylammonium cation. The single-crystal structure analysis showed that this substance crystallizes in the triclinic $${P\bar 1}$$ space group with a = 10.474(3) Å, b = 10.767(3) Å, c = 13.657(3) Å and α = 81.54(2)°, β = 80.44(2)°, γ = 67.63(2)°, V = 1398.5(8) Å3, and Z = 2. The nickel atom is coordinated to four sulfur atoms.
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  • 14
    ISSN: 1572-9001
    Keywords: Nicotine-derived nitrosaminoketone ; nitrosamine ; crystal structure ; molecular dimensions
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The three-dimensional structure of the carcinogenic nicotine-derived nitrosaminoketone, 4-(methyl-nitrosamino)-l-(3-pyridyl)-l-butanone, has been determined by X-ray crystallographic techniques. The molecule is essentially planar except for the methylnitrosamine group which is oriented at a dihedral angle of 68.7° to the pyridine ring. Molecules pack by way of —H⋯O interactions that involve the —NNO group.
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  • 15
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    Structural chemistry 6 (1995), S. 57-63 
    ISSN: 1572-9001
    Keywords: Hydrogen bonding ; carcinogen ; polycyclic aromatic hydrocarbon derivative ; dihydrodiol ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The crystal structure of the weak carcinogen 5-methylchrysene-7,8-dihydro-7,8-trans-(e,e)-diol is reported. This molecule contains a distorted bay region as a result of the presence of the 5-methyl group as found in 5-methylchrysene and 5,6- and 5, 12-dimethylchrysene. One torsion angle in this bay region is 20
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  • 16
    ISSN: 1572-9001
    Keywords: Betaine ; sodium perchlorate ; crystal structure ; polymeric framework
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Three crystalline complexes of sodium perchlorate with different flexible double betaines [Na 2(L1)(ClO4)(H2O) n ](ClO4) n (1), [Na 3(L2)(ClO4)3(H2O)2 n ] (2), and [Na(L 3)(CH3OH)n]-(ClO4) n ·xnH2O (x=0.25) (3) [−O2CCH2N+Me2−(CH2) n -N+Me2CH2CO2 −,n=2 L1;n=3 L2;n=4 L3] have been synthesized and characterized by single-crystal X-ray structure analysis. Complex (1) comprises tetranuclear sodium units consolidated by betaine and aqua ligands, which are bridged by half of the ClO4 − anions to form layers matching the (200) planes, the remaining uncoordinated ClO4 − anions being accommodated between adjacent layers. Complex (2) possesses a double-layer polymeric structure with the sodium atoms bridged by ligand oxygen atoms to form columns running parallel to thea axis, which are interconnected by double-betaine ligands lying parallel to theac plane. All of the ClO4 − groups and water molecules are coordinated to the metal atoms. In complex (3) the chains composed of alternating eight-membered and four-membered metallocycles are cross-linked by the betaine ligands, which lie in the (020) and (01/1) families of planes, to yield a three-dimensional network. All of the ClO4 − groups and water molcules fill the resulting infinite channels running parallel to thea axis. Two unusual carboxylate coordination modes are identified, namelyμ 3-O andhapto-3-O plushapto-2-O′ in (1) and (2), respectively.
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  • 17
    ISSN: 1572-9001
    Keywords: Tautomerism ; anthraquinone ; crystal structure ; semiempirical computations
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Substituted 1-hydroxy-9,10-anthraquinone-9-imines have been found to exhibit tautomeric interconversions between the 9,10- and 1,10-quinonoid forms in the solid state as well as in solution. Single-crystal X-ray crystallography was used to study the structures of 4-(N-acetyl-p-tolylamino)-9-amino-1,10-anthracenedione and 4-hydroxy-1-phenylamino-10-mesitylimino-9(10H)-anthracenone at ambient and low temperatures. The former compound gave crystals belonging to the monoclinic space group P2l/c and, at 295 K,a=9.684(2),b=16.371(3),c=12.097(2) å,Β=110.41(1)
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  • 18
    ISSN: 1572-9001
    Keywords: Benzopsoralen ; photochemotherapeutic agent ; crystal structure ; molecular mechanics ; AM1 theoretical calculations
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract 5-Methoxy-4-methyl-2H-benzofuro[3,2-g]benzo-1-pyran-2-one was synthesized and its crystal structure was determined and compared with the optimal conformation arrived at by MM and AM1 theoretical calculations. The latter indicated that the tetracyclic skeleton is planar with total length (C2–C8) 9.23 å, and that the line joining the conters of the terminal-benzene and furan rings makes an angle of 30.5
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  • 19
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    Structural chemistry 9 (1998), S. 39-45 
    ISSN: 1572-9001
    Keywords: Enantioselective chromatographic technique ; chiral selector ; ergot alkaloid derivative ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The structure of (+)1-(3-allylpropyl)-(5R,8S,10R)-N,N-diethyl-N′-[6-methylergolin-8-yl]urea, C22H33N4O (allyl-terguride), has been determined as part of a study on the chiral recognition mechanism of ergot alkaloids when they are used as the chiral stationary phase for the separation of racemic mixtures in liquid chromatographic methods. At the pH of the solution used for the crystallization, the molecules of allyl-terguride are protonated at N(6). All bond distances and angles are in the expected ranges. In the asymmetric unit one hydroxide ion is present. Hydrogen bonds join molecules of allyl-terguride in pairs along the b axis, connecting O(2) of the hydroxide ion to O(1) of one molecule and to N(2) and N(6) of another.
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  • 20
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    Journal of sol gel science and technology 13 (1998), S. 987-990 
    ISSN: 1573-4846
    Keywords: mullite ; MnO ; crystal structure ; electronic paramagnetic resonance (EPR) ; sol-gel chemistry
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Gels were synthesized from solutions of tetraethylorthosilicate (TEOS) and aluminium nitrate (with and without manganese nitrate). The structural evolution of the gels as a function of manganese content and heat-treatment temperature was studied by visible spectrophotometry (VIS), electron paramagnetic resonance (EPR), X-ray diffraction (XRD) and scanning electron microscopy (SEM). The results show that the presence of manganese can induce mullitization at lower temperatures. However, the effect of manganese depends on its content and how it enters into the mullite structure.
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  • 21
    ISSN: 1573-4943
    Keywords: Artificial neural network ; crystal structure ; statistics ; tetanus toxin ; botulinum neurotoxin
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Earlier studies used Rost and Sander's artificial neural network [(1993a), J. Mol. Biol. 232, 584–599] to predict the secondary structures [Lebeda and Olson (1994), Proteins 20, 293–300] and residue solvent accessibilities [Lebeda and Olson (1997), J. Protein Chem. 16, 607–618] of the clostridial neurotoxins. Because the X-ray crystal structure of the 50-kDa C-terminal half of the heavy chain of tetanus toxin was recently determined, this report evaluates the accuracy of these network-derived predictions. For this predominantly β-strand-containing fragment, predictions, on a per-residue basis, for both secondary structure and solvent accessibility were about 70% accurate. A more flexible and realistic analysis based on overlapping segments yielded accuracies of over 80% for the three-state secondary structure and for the two-state accessibility predictions. Because the accuracies of these predictions are comparable to those made by Rost and Sander using a dataset of 126 nonhomologous globular proteins, our predictions provide a quantitative foundation for gauging the results when building by homology the structures of related proteins.
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  • 22
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    Russian chemical bulletin 45 (1996), S. 370-375 
    ISSN: 1573-9171
    Keywords: organic conductors ; bis(ethylenedithio)tetrathiafuIvalene ; mercury halides ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract A new organic semiconductor, (ET)8[Hg4C112] · 2C6H6, obtained in the ET+-HgCl 3 − -PhF system has been studied by X-ray structural analysis. Radical cations of bis(ethylenedithio)tctrathiafulvalene (ET) in the organic layer of the structure are packed in stacks ofa-type. The average angle between the planes of ET cations from adjacent stacks is 50.1°. The anionic layer is formed by four-charge centrosymmetric [Hg4Cl12]4− complexes and benzene solvate molecules. A comparative crystal-chemical study of the salts obtained by the reaction in the ET+-HgX 3 − -PhY system (where X = Cl, Br, and I; Y = F, Cl, and Br) made it possible to reveal a substantial effect of the sizes of the X and Y atoms on the composition of the salts and on the structural characteristics of the layers, which are responsible for the various conductivities of these salts.
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  • 23
    ISSN: 1573-9171
    Keywords: substituted sulfur-containing cyclopentadienes ; cyclopentadienyl zirconium complexes ; dynamic behavior ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Chelating sulfur-containing cyclopentadienyl ligand tetramethyl(2-methylthioethyl)cyclopentadiene (1), was synthesized for the first time. Its sodium (2a) and lithium (2b) derivatives were isolated in the crystalline state. Starting from compound1 some novel ZrIV complexes were prepared: [tetramethyl(2-methylthioethyl)cyclopentadienylltriclllorozirconium (3), bis[tetramethyl(2-methylthioethyl)cyclopentadienylldichlorozirconium (4), and [pentamethylcyclopentadienyll [tetramethyl(2-methylthioethyl)cyclopentadienylldichlorozirconium (5). The crystal structures of3 and5 were determined by X-ray diffraction analysis. The dynamic behavior of complex3 in various solvents was investigated by1H and13C N MR spectroscopy. The S→Zr coordination bond was shown to exist in complex3 both in the crystalline state and in solution. No coordination of this type was found in compounds4 and5.
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  • 24
    ISSN: 1573-9171
    Keywords: cyclopentadienes with oxygen-containing substituents ; cyclopentadienyl zirconium complexes ; crystal structure
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    Topics: Chemistry and Pharmacology
    Notes: Abstract Several novel zirconium(iv) complexes with the chelating oxygen-containing cyclopentadienyl ligand, tetramethyl(2-methoxyethyl)cyclopentadiene, have been synthesized. [η5:η1-Tetra-methyl(2-methyl)cyclopentadienyl]trichlorozirconium (2), bis[η5-tetramethyl(2-methoxyethyl)cyclopentadienyl]dichlorozirconium (3), [η5-pentamethylcyclopentadienyl][η5-tetra-methyl(2-methoxyethyl)cyclopentadienyl]dichlorozirconium (4), and [η5-tetra-methyl(2-methylthioethyl)cyclopentadienyl][η5-tetramethyl(2-methoxyethyl)-cyclopentadienyl]dichlorozirconium (5) have been prepared from the corresponding lithium cyclopentadienide (l). The crystal structure of cyclopentadienyl complex2 has been established by X-ray analysis. The coordination O→Zr bond in compound2 exists both in the crystalline state and in solutions. No coordination of this type was observed in complexes3–5. Synthesized complexes2–5 are discussed in comparison with their sulfur-containing analogs.
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  • 25
    ISSN: 1573-9171
    Keywords: resorcinol-based crown ethers ; crystal structure ; intramolecular nonbonded C-H...O contacts
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    Topics: Chemistry and Pharmacology
    Notes: Abstract 13- and 26-Membered crown ethers have been synthesized based on resorcinol and 1,8-dichloro-3,6-dioxaoctane. The products with substituents in the benzene ring have been prepared by alkylation of 13-membered crown ether. Complexing properties of the macrocycles have been studied with the use of ion-selective membrane electrodes. The structures of 13- and 26-membered crown ethers have been established by X-ray structural analysis.
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  • 26
    ISSN: 1573-9171
    Keywords: dihydroisoquinoline derivatives ; crystal structure ; electronic, IR, and1H NMR spectra ; quantum-chemical calculation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract 3,3-Dimethyl-3,4-dihydroisocarbostyryl azine (2) has been synthesized by oxidation of l-hydrazino-3,3-dimethyl-3,4-dihydroisoquinoline (1). The crystal and molecular structures of compound 2 were determined. It has been established that in the solid state, compound2 exists as an azine tautomer. The IR, electronic, and NMR spectral data indicate that in solution the tautomeric form of2 does not change. A possible mechanism of the oxidation of1 to2 is suggested.
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  • 27
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    Glycoconjugate journal 14 (1997), S. 677-690 
    ISSN: 1573-4986
    Keywords: molecular dynamics ; crystal structure ; cellulose I and II
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    Topics: Chemistry and Pharmacology
    Notes: Abstract The paper describes molecular dynamics (MD) simulations on the crystal structures of the Iβ and II phases of cellulose. Structural proposals for each of these were made in the 1970s on the basis of X-ray diffraction data. However, due to the limited resolution of these data some controversies remained and details on hydrogen bonding could not be directly obtained. In contrast to structure factor amplitudes in X-ray diffraction, energies, as obtained from MD simulations, are very sensitive to the positions of the hydroxyl hydrogen atoms. Therefore the latter technique is very suitable for obtaining such structural details. MD simulations of the Iβ phase clearly shows preference for one of the two possible models in which the chains are packed in a parallel orientation. Only the parallel-down mode (in the definition of Gardner and Blackwell (1974) J Biopolym 13: 1975-2001) presents a stable structure. The hydrogen bonding consists of two intramolecular hydrogen bonds parallel to the glycosidic linkage for both chains, and two intralayer hydrogen bonds. The layers are packed hydrophobically. All hydroxymethyl group are positioned in the tg conformation. For the cellulose II form it was found that, in contrast to what seemed to emerge from the X-ray fibre diffraction data, both independent chains had the gt conformation. This idea already existed because of elastic moduli calculations and 13C-solid state NMR data. Recently, the structure of cellotetraose was determined. There appear to be a striking similarity between the structure obtained from the MD simulations and this cellotetraose structure in terms of packing of the two independent molecules, the hydrogen bonding network and the conformations of the hydroxymethyl group, which were also gt for both molecules. The structure forms a 3D hydrogen bonded network, and the contribution from electrostatics to the packing is more pronounced than in case of the Iβ structure. In contrast to what is expected, in view of the irreversible transition of the cellulose I to II form, the energies of the Iβ form is found to be lower than that of II by 1 kcal mol-1 per cellobiose.
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  • 28
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    Pharmaceutical research 13 (1996), S. 1003-1007 
    ISSN: 1573-904X
    Keywords: molecular simulation ; interfacial energy ; wettability ; crystal structure ; Monte Carlo method ; potential energy calculations ; contact angle
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Purpose. This study describes the development and application of a molecular simulation technique for investigating the solid-liquid interface. It attempts to relate the molecular and crystal structure to the observed wettability of solids. Methods. Molecular simulations have been carried out for the crystal-water interface of a series of N-n-alkyl-D-gluconamide crystals using the Monte Carlo technique. The molecular system simulated consisted of a layer of water bounded by two crystal slabs. The interfacial potential energies were calculated for the crystal-water interactions and compared with experimental enthalpy values obtained from contact angle measurements. Results. The simulations clearly reveal the distinct hydrophilic and hydrophobic nature of the respective (010) and (010) faces of these compounds. The distribution of water at the interface observed in the simulations is in accord with the nature of the crystal faces. The calculated interfacial potential energies are in the right ball park, but consistently higher than the experimental values. The disparity, however, is justifiable, resulting from the highly simplified model simulated. Conclusions. Using the developed molecular simulation technique one can calculate the wettability of a solid given the crystal structure. This approach represents an important step towards the goal of engineering crystals with desired wettability characteristics.
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  • 29
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    Pharmaceutical research 12 (1995), S. 337-341 
    ISSN: 1573-904X
    Keywords: 2-debenzoyl, 2-acetoxy paclitaxel ; docetaxel ; paclitaxel side-chain ; crystal structure ; solid state conformation ; intramolecular hydrogen bonding ; intermolecular hydrogen bonding
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Crystals of the C2-acetate analog of paclitaxel, grown from a mixture of isopropyl alcohol and methanol, belong to the space group P2l with a = 9.058(3), b = 18.306(5), c = 15.043(1) Å, β = 97.09(1)°, Z = 2, V = 2475.1(9)Å3, D calc = 1.269 gcm−3 and µ = 0.75 cm−1. The structure was determined by direct methods and refined to R(F) = 0.054 and wR(F) = 0.057 for 605 variables and 3496 observed reflections. The paclitaxel side chain possesses a conformation similar to that observed in the crystal structure of docetaxel (Taxotere®). A three dimensional network of hydrogen bonds is formed through solvent molecules and stabilizes the crystal lattice.
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  • 30
    ISSN: 1573-6881
    Keywords: Terminal oxidase ; redox coupling ; electrochemical gradient ; electron transport ; energy transduction ; proton translocation ; crystal structure ; site-directed mutagenesis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Chemistry and Pharmacology , Physics
    Notes: Abstract One of the challenging features of energy-transducing terminal oxidases, like the aa 3 cytochrome c oxidase of Paracoccus denitrificans, is the translocation of protons across the cytoplasmic membrane, which is coupled to the transfer of electrons to oxygen. As a prerequisite for a more advanced examination of the enzymatic properties, several amino acid residues, selected on the basis of recent three-dimensional structure determinations, were exchanged in subunit I of the Paracoccus enzyme by site-directed mutagenesis. The properties of the mutated oxidases were analyzed by different methods to elucidate whether they are involved in the coupled and coordinated transfer of protons via two different pathways either to the site of oxygen reduction or through the enzyme from the cytoplasm to the periplasmic side.
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  • 31
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    Journal of inclusion phenomena and macrocyclic chemistry 22 (1995), S. 33-40 
    ISSN: 1573-1111
    Keywords: Calixarene-dye ; crystal structure ; inclusion compound
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    Topics: Chemistry and Pharmacology
    Notes: Abstract The structure of thep-tetrakis-(4-nitrophenylazo)calix[4]arene-4-picoline (1∶4) complex has been determined by X-ray crystallography. Crystals are monoclinic, space groupC2/c,a=24.9097) Å,b=8.425(6) Å,c=33.81(1) Å, β=101.13(2)°,D c =1.330 g/cm3,Z=4, finalR value =0.067. The cone conformation adopted by this azocalixarene is disturbed by the positions of the picoline molecules. Two of them are inside the macorocycle cavity and the two others are outside.
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    Journal of inclusion phenomena and macrocyclic chemistry 22 (1995), S. 119-130 
    ISSN: 1573-1111
    Keywords: Calixarene ; complexation ; crystal structure
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    Topics: Chemistry and Pharmacology
    Notes: Abstract A new method is described for the synthesis of isolatedp-tert-butyldihomooxacalix[4]arene (CALO) with a 24% yield. The ability of CALO to form complexes in the solid state with small neutral molecules has been studied; the potential guests were common solvents bearing various chemical functions. The powder obtained after evaporation of the solvent has been characterized by the X-ray powder diffraction technique. Analysis of the patterns shows the non-complexation of linear alkanes and alcohols, but formation of complexes when the guest is cyclic or when it bears an amine or a ketone function. As illustration of the possible arrangement of molecules in complexes, the structure of the 1:2 complex with tetrahydrofuran (THF) is presented: the crystals are monoclinic, space groupP21/c,a=9.459(2) Å,b=17.286(2) Å,c=30.469(6) Å, β=92.52(2)o,V=4977(2) Å3,Z=4,D c=1.099 Mg m−3, λ=1.54178 Å, μ=5.6 cm−1,R=0.086 for 3590 reflections withF〉4σ (F); one of the THF molecules is inside the cavity of the macrocycle, while the other, in the interhost space, exhibits disorder. In the CALO molecule, three out of the fourtert-butyl groups are disordered which may induce the disorder of the THF molecule.
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    Journal of inclusion phenomena and macrocyclic chemistry 22 (1995), S. 187-201 
    ISSN: 1573-1111
    Keywords: Inclusion compounds ; gossypol ; crystal structure ; hydrogen bonds
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    Topics: Chemistry and Pharmacology
    Notes: Abstract The crystal structure of the inclusion compound of gossypol withn-valeric acid as a guest molecule has been determined by X-ray structure analysis. The crystals of C30H30O8·(C5H10O2)2, are triclinic, space group $$P\bar 1$$ ,a=6.912(2),b=14.506(3),c=19.387(4) Å, α=78.85(2)°, β=83.92(3)°, γ=86.78(3)°V=1895(1) Å3,Z=2,D x=1.267 g cm−3, μ (CuK α)=0.768 mm−1,T=292 K. The structure has been solved by direct methods on intensity data collected for a twinned crystal and refined to the finalR value of 0.062 for 1606 observed reflections and 470 refined parameters. Gossypol-n-valeric acid (1/2) coordinato-clathrate is not isostructural with any of the previously investigated gossypol inclusion compounds but shows some structural similarities to gossypol-acetic acid (1/1). The host and one of the carboxylic acid molecules are connected via hydrogen bonds into molecular assemblies of a column type which are further bonded to centrosymmetric dimers of the secondn-valeric acid molecule. In effect, host and guest molecules are assembled into layer-type H-bonded aggregates. Structural features common to gossypol-n-valeric acid (1/2) and other earlier reported gossypol inclusion compounds are discussed.
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    Journal of inclusion phenomena and macrocyclic chemistry 33 (1999), S. 321-330 
    ISSN: 1573-1111
    Keywords: crystal structure ; hexakis(2,3,6-triO-methyl)- α-cyclodextrin ; (R)-(-)-1,7-dioxaspiro ; {}[5.5]undecane ; chiral recognition
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The crystal structure of the 1 : 1 inclusion complex of hexakis(2,3,6-tri-O-methyl)- α-cyclodextrin (TM αCD) with 1,7-dioxaspiro[5.5]undecane (spiroacetal) is orthorhombic, space group C2221, with a = 24.002(2), b = 14.812(1), c = 21.792(2) Å V = 7747.3(11) Å3 and Z = 8. The molecular six-fold axis of TM αCD coincides with the a two-fold crystallographic axis and the guest is located at the secondary methoxy group side, disordered over two positions related by that axis. The guest model used during the refinement is that of the (R)-enantiomer alone because trials to either refine a 1 : 1 mixture of (R)- and (S)-enantiomers or the (S)-enantiomer alone failed. The crystallographic evidence of enantioselectivity towards the (R)-enantiomer of spiroacetal was confirmed by independent experiments and may be attributed to numerous non bonding interactions between host and guest involving non conventional H-bonds.
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  • 35
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    Colloid & polymer science 274 (1996), S. 1006-1011 
    ISSN: 1435-1536
    Keywords: Syndiotactic polypropylene ; cold stretching ; chain conformation ; crystal structure ; crystallization behavior
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology , Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
    Notes: Abstract The influence of the chain conformation on the crystallization behavior of cold-drawn syndiotactic polypropylene (sPP) has been investigated. The conformational and structural changes depending on drawing conditions and thermal treatments has been observed by x-ray diffraction, infra-red spectroscopy and modulated differential scanning calorimetry. A nucleation and crystal growth model is introduced, which explains the low crystallinity of cold-drawn sPP.
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  • 36
    ISSN: 1572-9001
    Keywords: x-ray ; crystal structure ; cocaine ; analogs ; QSAR ; CoMFA
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    Topics: Chemistry and Pharmacology
    Notes: Abstract A QSAR and CoMFA study including 78 cocaine analogs has been completed. These analogs have varied functional groups on the 2β and 3β positions of the tropane ring and include various stereoisomers. The CoMFA program was used to calculate the steric and electrostatic interaction energies as a probe atom or probe charge interacts with the molecules. Shaded contour maps show regions of the cocaine analogs where an increase in bulky substituents is desirable for increased pharmacological activity. The maps also show that small electronegative substituents on the phenyl ring are favored for enhanced activity. The X-ray crystal structures of (–)-cocaine hydrochloride (1) and N-methyl-3β-(p-fluorophenyl)tropane-2β-carboxylic acid methyl ester (2) are reported. These molecules are mostly rigid except for some rotational flexibility in the orientation of the phenyl and benzoyl functional groups. Crystallographic data: (1) C17H21NO4·HCl, orthorhombic space group P212121, a = 7.622(1)Å, b = 10.285(1)Å, c = 21.428(3)Å, Z = 4, final R = 0.035 for 960 observed reflections (I〉3σ(I)). (2) C16H20FNO2, monoclinic space group C2, a = 22.572(7)Å, b = 5.810(1)Å, c = 15.752(4)Å, β = 133.65(2)°, Z = 4, final R = 0.059 for 1511 observed reflections (I〉3σ(I)).
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  • 37
    ISSN: 1572-9001
    Keywords: Cesium complexes ; crown ethers ; mercuric iodide ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Reactions of CsI and HgI2 with benzo-15-crown-5 (B15C5) and 15-crown-5 (15C5) in an ethanol-acetone mixture produced [Cs(B15C5)2]2[Hg2I6] (1) and {[Cs(15C5)]2[Hg2I6]}n (2), respectively. The structures of the two complexes are quite different. Molar ratios of Cs+ : crown ether are 1 : 2 in 1 and 1 : 1 in 2. Complex 1 consists of two Cs(B15C5) 2 + cations and a Hg2I 6 2- anion. Cs+ lies between the two crown-5 ligands, resulting in a sandwich-type cation. Cationic Cs(B15C5) 2 + and anionic Hg2I 6 2- are linked together by electrostatic interactions and the complex 1 is an ion pair compound. Complex 2 consists of infinite [Cs(15C5)]2[Hg2I6] units. Each structural unit contains two Cs(15C5)+ cations and a Hg2I 6 2- anion. Cs+ is coordinated by five oxygen atoms of 15C5, three iodine atoms of Hg2I 6 2- , and an iodine atom of Hg2I 6 2- in an adjacent structural unit. The interactions between the Cs+ of Cs(15C5)+ and an I− in Hg2I 6 2- from adjacent structural units polymerize the complex 2, resulting in a one-dimensional network structure. The anions of Hg2I 6 2- in both complexes are similar. The two mercury atoms are linked through two bridging iodine atoms and each mercury is also coordinated by two terminal iodines. Crystal data for 1: space group P21/c (No. 14), a = 12.253(4), b = 20.945(7), c = 16.110(6) Å, β = 111.0(1)°, V = 3860 Å3, Z = 4, R = 0.082 (R w = 0.089). Crystal data for 2: space group P21/c (No. 14), a = 12.157(4), b = 8.546(4), c = 20.666(6) Å, β = 91.54(3)°, V = 2146 Å3, Z = 4, R = 0.034 (R w = 0.048).
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  • 38
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    Structural chemistry 8 (1997), S. 141-147 
    ISSN: 1572-9001
    Keywords: Dibenzanthracene ; trinitrobenzene complex ; trinitrobenzene complex ; π-complex ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The crystal structure of the complex between the polycyclic aromatic hydrocarbon di-benz[a,c]anthracene and 1,3,5-trinitrobenzene is reported. The crystals are triclinic, space group P¯1 with unit cell dimensionsa=7.277(2) å,b=11.237(6) å, andc=13.902(5) å,α= 104.13(4)
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  • 39
    ISSN: 1573-904X
    Keywords: HMG-CoA reductase inhibitor ; SQ-33600 ; crystal structure ; hydrates ; solid-state fluorescence
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract It has been shown previously that the disodium salt of a new HMG-CoA reductase inhibitor (SQ-33600) is capable of existing as a number of hydrate species [1]. Three crystalline solid hydrates and one liquid crystalline phase have been identified, each having a definite stability over a defined range of humidity. These forms have been found to exhibit varying fluorescence properties in their respective solid states, with differences in bandshapes and intensities being noted for each. These spectral variations have been correlated with the known pseudopolymorphism of the compound.
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  • 40
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    Journal of inclusion phenomena and macrocyclic chemistry 26 (1996), S. 153-159 
    ISSN: 1573-1111
    Keywords: Cadmium cyanide ; crystal structure ; clathrate ; mineralomimetic chemistry ; dimethyl carbonate
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Cd(CN)2·(CH3O)2CO (1) contains a mineralomimetic framework of Cd(CN)2 analogous to the low temperature form of cristobalite. The host framework is isostructural to those of previously reported Cd(CN)2·G compounds (G = CHCl2CH2Cl2, (CH3)2CHBr3). The dimethyl carbonate molecules in the adamantane-like cage display orientation disorder associated with the location of the carbonyl oxygen atom.
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  • 41
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    Journal of inclusion phenomena and macrocyclic chemistry 27 (1997), S. 169-178 
    ISSN: 1573-1111
    Keywords: Bridged calix[4]arene ; ditopic receptor ; crystal structure
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    Topics: Chemistry and Pharmacology
    Notes: Abstract The crystal structures of a new solvate of the ditopic receptor 1,3-calix[4]-bis-crown-6, Bis-C6, and of 1,3-calix[4]-bis-(benzo-crown-6), Bis-benzoC6, are reported. Bis-C6.3 CH3CN (1) crystallizes in the monoclinic space group P21/n, a = 14.388(3), b = 26.947(8), c = 14.707(4) Å, β = 113.19(3)°, V = 5241(5) Å3, Z = 4. Refinement led to a final conventional R value of 0.092 for 2723 reflections. The structure of (1) differs from the previously reported structure of Bis-C6.4 CH3CN by the conformation of one crown either chain. Two acetonitrile molecules are in the close neighbourhood of the crown ether cavities. Bis-benzoC6.3 CH3CN (2) crystallizes in the monoclinic space group P21/c, a = 10.391(4), b = 17.264(11), c = 30.426(9) Å, β = 94.62(3)°, V = 5440(7) Å3, Z = 4. Refinement led to a final conventional R value of 0.106 for 2965 reflections. Two acetonitrile molecules are located near the crown ether cavities, as in (1). One of the crown ether conformations is the same as in the binuclear caesium complex of Bis-benzoC6, supporting the hypothesis of a preorganization of this ligand towards the complexation of this ion; the second crown ether chain is partially disordered.
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  • 42
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    Journal of inclusion phenomena and macrocyclic chemistry 28 (1997), S. 125-140 
    ISSN: 1573-1111
    Keywords: X-ray ; crystal structure ; Li-complex ; triamides ; 1H-NMR
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The structure of the lithium complex with1,3,5-tris[oxymethylene(N,N-dicyclohexyl)carboxyamido]cyclohexanehas been determined by the X-ray method.The compound is triclinic, space group P¯1,a = 15.623(3), b = 19.279(4),c = 19.295(4)Å α = 102.32(3), β = 92.45(3),γ = 105.67(3)0, V = 5436(2)Å3, Z = 4. Itscomposition is represented by the formulaC48H82N3O6LiI 0.5H2O. The lithium cationis encapsulated in a polar pseudo-cavity of six oxygen atoms of the ligandmolecule and displays a distorted trigonal prism coordination. The conformationof the ligand in the solid state complex has been compared with the conformationof the complex in solution determined by 1H-NMR measurements. Supplementary data relevant to this publication have been deposited with the British Library, No. SUP 82224 (21 pages).
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  • 43
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    Journal of inclusion phenomena and macrocyclic chemistry 28 (1997), S. 17-32 
    ISSN: 1573-1111
    Keywords: Azocrown ether ; azoxycrown ether ; sodium complexes ; crystal structure ; X-ray analysis ; conformation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Sodium iodide complexes of 13-membered azo-(I)and azoxycrown ethers (II) have been synthesized. Compound I[Na(L1 trans)2]⋅I⋅H2O is triclinic witha = 11.53(2), b = 15.74(2), c = 19.17(2) Å,α = 98.93(9), β = 105.51(9),γ = 89.20(9) deg.; Z = 4, space groupP1. Compound II [Na(L2)2]⋅I is orthorhombic witha = 12.451(2), b = 13.796(3), c = 18.667(4)Å; Z = 4, space group P212121. In bothcomplexes the cation is coordinated tochain oxygen atoms and to one nitrogen atom of the azoor azoxy unit. The ability of bothligands to form complexes in relation to thegeometry of the azo or azoxy subunit of themacrocycle is discussed.
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    Journal of inclusion phenomena and macrocyclic chemistry 33 (1999), S. 27-38 
    ISSN: 1573-1111
    Keywords: X-ray crystallography ; gossindane ; inclusion complexes ; H-bond ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Gossindane, the oxidation product of gossypol, demonstrates inclusion properties towards four solvents chosen accidentally. The crystal data of these complexes with ethanol (I), ethylacetate (II), dichloromethane (III) and water (IV) are: (I): C26H30O6· 2C2H5OH, monoclinic, P2/c, a = 8.687(2) Å, b = 10.986(3) Å, c = 14.778(3) Å β = 110.94° V = 1317 Å3, Z = 2, R = 0.069, N = 1368; (II): C26H30O6· 0.5C4H8O2, monoclinic, P21/c, a = 8.960(2) Å, b = 21.937(5) Å, c = 14.712(3) Å, β = 111.98(2)°, V = 2681 Å3, Z = 4, R = 0.083, N = 2653; (III): C26H30O6· CH2Cl2, monoclinic, P21/c, a = 8.886(2) Å, b = 21.778(6) Å, c = 14.996(4) Å, β = 111.31(3)°, V = 2704 Å3, Z = 4, R = 0.131, N = 1580; (IV): C26H30O6·2H2O, monoclinic, C2/c, a = 29.422(9) Å, b = 6.720(2) Å, c = 27.525(9) Å, β = 117.43(2)°, V = 4830 Å3, Z = 8. R = 0.096, N = 2240. In the solvates H-bonded host molecules form bilayers with very similar structures and a nearly hydrophobic surface. Guest molecules are placed in channels formed between these bilayers and may be H- bonded to host molecules (ethanol). In the hydrate two water molecules using their H-bonding capacity incorporate gossindane molecules into bilayers.
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  • 45
    ISSN: 1573-1111
    Keywords: ion-selective membrane electrodes ; ionophores ; crystal structure ; tetraazacrown ethers
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Tetra-N-substituted 1,10-dioxa-4,7,13,16-tetraazacyclooctadecanes (tetraazacrown ethers) (1-5) have been synthesised. Each compound was incorporated in a PVC membrane that provided the basis for a lead-selective potentiometric electrode. The electrode based on the 4,7,13,16-tetrathenoyl-1,10-dioxa-4,7,13,16- tetraazacyclooctadecane (5) ionophore bearing four thenoyl functional subunits exhibited excellent lead (II) ion selectivity with only Ag+ and Hg2+ significantly interfering. The crystal structure of this host (5) has been determined by single crystal X-ray analysis. Crystal data. C32H36N4O6S4, M 700.9, monoclinic, space group P21/c, a, 10.315(4), b, 13.635(2), c, 14.357(6)Å, β 124.63(2)°, V 1661.6(9)Å3, Dc 1.40 g cm-3, Z 2, μ Cu 29.90 cm-1. Final residuals R, Rw were 0.054, 0.082 for the observed data.
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  • 46
    ISSN: 1573-1111
    Keywords: unsymmetrical ditopic calixcrown ; synthesis ; crystal structure
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    Topics: Chemistry and Pharmacology
    Notes: Abstract Consecutive base-catalysed reactions of calix[4]arene with the ditosylates of two different polyetherdiols result in the relatively efficient production of an unsymmetrical calix biscrown-6 which, after reduction of an ethoxycarbonyl substituent to an hydroxymethyl group, has been characterised structurally by a room-temperature, single crystal X-ray study of its chloroform solvate. Crystals of ( 4), C53H62O13... ∼0.57CHCl3, are triclinic, P¯1, a 18.95(3), b 12.394(9), c 11.756(7) Å α 106.93(5), β 101.77(8), γ 94.63(8)°, Z = 2; R was 0.088 for 2231 ’observed' (I 〉 3σ(I)) diffractometer data.
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  • 47
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    Journal of inclusion phenomena and macrocyclic chemistry 31 (1998), S. 357-365 
    ISSN: 1573-1111
    Keywords: calixarenes ; crystal structure ; supramolecular assembly
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    Topics: Chemistry and Pharmacology
    Notes: Abstract p-Benzylcalix[5]arene.3py (py = pyridine) (1) crystallizes in the triclinic space group P1, a = 10.641(3), b = 13.975(3), c = 24.052(12) Å, α = 94.60(4), β = 91.51(4), γ = 111.46(2)°, V = 3312(4) Å3, Z = 2. Refinement led to a final conventional R value of 0.065 for 5457 reflections. The calixarene is in a distorted cone conformation. Two pyridine molecules are hydrogen bonded to phenolic oxygen atoms and one of them is included in the hydrophobic cavity of the neighboring calixarene molecule along the a axis.
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  • 48
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    Journal of inclusion phenomena and macrocyclic chemistry 22 (1995), S. 145-154 
    ISSN: 1573-1111
    Keywords: tert-Butylamine 7.25 H2O ; amine hydrate ; semi-clathrate ; clathrate hydrate ; hydrate ; hydrogen bonding ; crystal structure
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    Topics: Chemistry and Pharmacology
    Notes: Abstract Of the various hydrates oftert-butylamine, the title compound has been identified as the second-highest, melting incongruently at −19°C. Its crystal structure (orthorhombic, space groupPca21,Z=32 formula units per unit cell,a=24.80,b=16.440,c=25.29 Å) and the exact composition have been determined from X-ray diffraction at −150°C. The hydrate is a rather complex semi-clathrate, with the amine molecules not merely encaged, but also hydrogen-bonded, in a three-dimensional water host structure, which in turn is not fully four-connected. Nevertheless, it bears a clear relationship to the basic and genuine clathrate-hydrate cubic 12 Å type.
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  • 49
    ISSN: 1573-1111
    Keywords: 18-crown-6 ; diaminofurazane ; crystal structure ; host-guest complexes
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    Topics: Chemistry and Pharmacology
    Notes: Abstract An X-ray—diffraction study is reported for two molecular complexes containing 3,4-diamino-1,2,5-oxadiazole as guest (G) with 18-crown-6 (18-C-6) andcis-anti-cis-dicyclohexano-18-crown-6 (DCH-6B) as host. Both complexes are of the polymeric-chain structure with the guest molecule bridging two crown neighbours. ComplexI: [18-C-6*G*H2O], 1∶1∶1, monoclinic,P21/n,a=8.171(1),b=15.042(2),c=16.209(6) Å, β=101.15(2)°, finalR-factor 0.068. ComplexII: [DCH-6B*G], 1∶1, monoclinicC2/c,a=21.212(4),b=9.380(2),c=13.049(3) Å, β=108.61(3)°, finalR 0.047.
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  • 50
    ISSN: 1573-1111
    Keywords: Cyanocuprate(I) complex ; crystal structure ; three-dimensional framework ; bifurcated cyano group ; N-(2-aminoethyl)piperazine ; hydrogen-bond ; dimeric onium guest
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The title inclusion compound [{NH2(CH2CH2)2NCH2CH2NH2}2H][Cu4(CN)7] was obtained as single crystals from an aqueous solution containing CuCN, KCN, andN-(2-aminoethyl)piperazine. It crystallizes in the monoclinic space groupP2/n,a = 12.3829(9),b = 8.5970(9),c = 12.6633(7) Å, β = 109.984(5)°,z = 2,R = 0.035 for 2921 independent reflections. The inclusion structure is composed of the hydrogen-bonded dimeric onium guest [{NH2(CH2CH2)2NCH2CH2NH2}2H]3+ and the negatively-charged three-dimensional host [CU4(CN)7]3− in which the CN-bridged framework Cu(I) atoms are all tetrahedral. A polyacene-like one-dimensional array of hexagons cornered by Cu(I) atoms and edged by -CN- linkages is arrayed in parallel to theb axis and stacked approximately along the c axis. The Cu(I) corner shared in the one-dimensional array extends an N-coordinate CN group along the c axis to a pair of unshared Cu(I) corners for which the C end behaves as a bifurcated ligand to build up the three-dimensional host structure. The cavity is composed of two networks of the hexagons at the top and bottom and pillared by six 〉CN- groups and accommodates a dimeric guest ofN-(2-aminoethyl)piperazinium cations protonated at each 4-N with the cations being hydrogen-bonded to each other through the 2-NH2 groups sharing another H+.
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  • 51
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    Journal of inclusion phenomena and macrocyclic chemistry 26 (1996), S. 197-207 
    ISSN: 1573-1111
    Keywords: Crown ether ; nitromethane complex ; coordination isomers ; crystal structure
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    Topics: Chemistry and Pharmacology
    Notes: Abstract Single crystal X-ray diffraction analyses of two nitromethane complexes of furanotribenzo-21-crown-7 (1 and2) and the nitromethane complex of dibenzo-2l-crown-7 (3) are reported. The two nitromethane complexes1 and2 are polymorphic in that the macrocyclic ring adopts the ‘dentist's chair’ conformation in both structures, with a single nitromethane molecule coordinating to either the lower, concave (1) or upper, convex (2) face of the crown ether. Complex3 adopts an entirely different conformation with a coplanar arrangement of the crown ether oxygen atoms binding a single nitromethane molecule.
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  • 52
    ISSN: 1573-1111
    Keywords: β-Dimorph ; crystal structure ; dianilinegossypol ethylacetate 1 : 1 clathrate ; packing motifs
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    Topics: Chemistry and Pharmacology
    Notes: Abstract Depending on crystallization conditions, dianilinegossypol and ethylacetate form low (ambient temperature, α-phase) and high temperature (t = 35°C, β-phase) clathrate modifications. The structure of the α-phase has been discussed earlier [1]. Crystals of the 1 : 1 β-phase complex, C42H40O6N2·C4O2H8, are monoclinic, space group P21/c, a = 11.362(6), b = 19.479(9), c = 19.085(9) Å, β = 103.21(4)°, V = 4112(3)Å3, Z = 4, R = 0.084 for 3210 observed reflections. In these complexes centrosymmetric dimers of dianilinegossypol molecules formed via O(5)—H···O(3) hydrogen bonds are associated into columns by a weak O(8)—H···O(7) H-bond. A difference in the structure of these two phases is in the packing mode of the columns. The angle formed by intersecting host columns is about 126° for the α-phase and 104° for the β-modification. Guest molecules are hydrogen bonded to the host molecules via an O(1)—H···O(10) bond and are accommodated in channels in α-phase complex and in cavities in β-phase complex.
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  • 53
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    Journal of inclusion phenomena and macrocyclic chemistry 22 (1995), S. 211-219 
    ISSN: 1573-1111
    Keywords: (R, R)-Tartaric acid derivatives ; host-guest compounds ; crystal structure
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    Topics: Chemistry and Pharmacology
    Notes: Abstract TheO, O′-dibenzoyl derivative of (R, R)-tartaric acid shows a good inclusion ability for diethyl and di-n-propol ethers. The two crystalline inclusion compounds have 1:1 stoichiometry and reveal isomorphous structures. Hydrogen bonded host molecules form chains running along thez axis of the unit cell and guest molecules join to these chains by short O−H...O hydrogen bonds. Hydrogen bonding in the crystals is characterized by a C(7)D first-order network. The ether molecules are in a fully extended conformation. They are accommodated in channel-like voids running along thex axis. Atomic displacement parameters are significantly larger for diethyl ether than for the di-n-propyl ether molecule reflecting less dense packing for this inclusion compound.
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  • 54
    ISSN: 1573-1111
    Keywords: Bridged calix[4]arene ; caesium complex ; ditopic receptor ; crystal structure
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    Topics: Chemistry and Pharmacology
    Notes: Abstract The crystal structures of two binuclear complexes between caesium and 1,3-calix[4]-bis-crowns have been determined. Cs2 Bis-benzoC6(NO3)2. 3CHCl3 (1) in whichBis-benzoC6 is 1,3-calix[4]-bis-benzo-crown-6, crystallizes in the orthorhombic system: space groupPca2 1 a=19.513(10),b=15.382(5),c=23.708(9) Å,V=7116(5) Å3,Z=4. Refinement led to a final conventionalR value of 0.065 for 2321 reflections. The structure of (1) is analogous to those already reported withBis-C6, (in whichBis-C6 is, 1,3-calix[4]-bis-crown-6) and NO 3 − as a counter-ion. Cs2 Bis-C6(NCS)2 (2) crystallizes in the monoclinic system: space, groupC2 a=36.57(2),b=11.47(1),c=13.65(1) Å, β=109.03(5)°.,V=5415(6) Å3,Z=4. Refinement led to a final conventionalR value of 0.063 for 2227 reflections. Compound (2) is made of dimers bridged by a disordered NCS− ion. The crown ether chain conformations are discussed.
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  • 55
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    Journal of inclusion phenomena and macrocyclic chemistry 27 (1997), S. 13-20 
    ISSN: 1573-1111
    Keywords: Uranyl complexes ; calixarenes ; crystal structure
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    Topics: Chemistry and Pharmacology
    Notes: Abstract The synthesis and crystal structure of the inclusion complex between uranyl and p-tert-butylcalix[5]arene are reported. [UO2 (p-tert-butylcalix[5]arene-4H]2- · $${\text{2HNE}}_{{\text{t}}_{\text{3}} }^{\text{ + }} $$ &·2MeOH(1) crystallizes in the monoclinic space group C2/c, a = 30.06(2), b = 18.20(3), c = 31.35(2) Å, β = 128.51(6)°, V = 13423(40) Å3, Z = 8. Refinement led to a final conventional R value of 0.043 for 4155 reflections. The uranyl ion is bonded, in its equatorial plane, to the five oxygen atoms of the calixarene, four of which are deprotonated. A protonated triethylamine molecule is located inside the calixarene cavity and hydrogen bonded to a uranyl oxygen atom, and another one outside and hydrogen bonded to a calixarene oxygen atom. The calixarene conformation is the usual cone one.
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  • 56
    ISSN: 1573-1111
    Keywords: Calix[4]arene ; polyether ; crystal structure ; alkali metal ion binding
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    Topics: Chemistry and Pharmacology
    Notes: Abstract The ligand 5,11,17,23-tetra-t-butyl-25,27-di(phenylmethoxy)-26,28-di(2-methoxy-ethoxy)calix[4]arene,designed as an analogue of some calixcrown speciesin order to evaluate possible origins of their selectivity in alkali metal ion binding, has been synthesised and structurally characterised by X-ray crystallography. The crystals are monoclinic, P21/n, a = 15.940(6), b = 19.388(5), c = 20.020(5) Å,β = 109.10(2) deg., Z = 4, conventional R on |F| being 0.073 for 3454 independent, ’observed‘ (I 〉 3σ(I)) reflections. 1H-NMR studies in 1:1 CD3CN/CDCl3solvent have shown that the ligand exerts a strong preference for the lighteralkali metal ions (Li+ and Na+) contrary to the binding behaviour of knowncalixcrowns. This may reflect interactions restricted to the lower rim donor atoms without concomitant interaction with the calixarene π-electrons, perhaps because the latter interactions are substituted by those with the benzyl group π-electrons.
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  • 57
    ISSN: 1573-1111
    Keywords: Dianilinegossypol ; crystal structure ; host–guest complexes ; H-bond ; α- and β-dimorphs
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Dianilinegossypol forms a 1 : 2 host-guest complex with DMSO:monoclinic, space group P21/n, a = 8.522(3), b = 18.034(4), c= 28.462(6) Å, β = 94.14(2)°, V = 4362Å3, Z = 4, D x = 1.26 g cm-3, T = 295 K.Final R value is 0.102 for 1793 observed reflections. A 1 : 1 : 1 adduct ofdianilinegossypol with 1,4-dioxane and 1,2-dichloroethane is found to beisostructural with the dianilinegossypol complex with DMSO: monoclinic,space group P21/n, a = 8.281(2), b = 19.245(3), c = 27.970(7)Å, β = 95.18°, V = 4439 Å3, Z = 4, D x =1.28 g cm-3, T = 295 K. Final R value is 0.114 for 2458observed reflections.The host molecules are associated by O(4)—H ...O(3) H-bonds toinfinite chains running in the direction of the c-axis The chains areincorporated into layers through 1,4-dioxane or DMSO molecules havingH-bonds with dianilinegossypol molecules. Another DMSO or 1,2-dichloroethanemolecule is included as a guest in the channels formed between the layers.At 60 °C a cryptate-type inclusion complex of dianilinegossypol isformed with DMSO or 1,4-dioxane. It is isostructural with the acetonecomplex reported in Part IV of the present series.
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  • 58
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    Journal of inclusion phenomena and macrocyclic chemistry 29 (1997), S. 175-185 
    ISSN: 1573-1111
    Keywords: p-tert-Butylcalix[5]arene ; synthesis ; complexation ; crystal structure
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract The formation of p-tert-butylcalix[5]arene by the opening ofp-tert-butyldihomooxacalix [4]arene and the addition of a monomer has beenstudied. Various facets, including the effects of bases and the nature ofthe monomer added to the p-tert-butyldihomooxacalix[4]arene, have beeninvestigated. p-tert-Butylcalix[5]arene can be prepared in yields up to30%. The structure of its 1 : 2 complex with DMF has been determinedby X-ray crystallography. Crystals are triclinic, space group P¯1, a =1428.2(3) pm, b = 1837.3(3) pm, c = 1276.1(2) pm, α = 108.98(1)°,β = 105.02(2)°, γ = 95.21(1)°, Z = 2, D c = 1.059 kg m-3,final R value = 0.087. The macrocycle adopts a cone conformation, one guestenclosed inside the cavity, the other one outside.
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  • 59
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    Journal of inclusion phenomena and macrocyclic chemistry 33 (1999), S. 331-338 
    ISSN: 1573-1111
    Keywords: dicyclohexano-18-crown-6 ; succinonitrile ; glutaronitrile ; crystal structure
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    Topics: Chemistry and Pharmacology
    Notes: Abstract Formation of the host-guest compounds between isomers of dicyclohexano-18-crown-6 as hosts (DC18C6) and various dinitriles as guests has been observed. The structures of two representative compounds (cis-anti-cis-DC18C6...2(NCCH2CH2CN) ( I) and (cis-syn-cis-DC18C6...(NCCH2CH2CH2CN) ( II) were obtained using X-ray diffractometry. Crystal data: ( I) P=¯1, a = 8.586(3), b = 9.324(3), c = 10.714(4) Å α = 72.47(3)°, β = 73.57(3)°, γ = 72.37(3), R1 = 0.034, GooF 1.08, Z = 1; ( II) Pbca, a = 12.881(5), b = 17.887(8), c = 23.042(13) Å, R1 = 0.049, GooF 1.02, Z = 8. Both structures show weak C–-H...O interactions between α-methylene protons of dinitrile guest molecules and oxygen atoms of the macrocyclic host ring.
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  • 60
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    Journal of inclusion phenomena and macrocyclic chemistry 34 (1999), S. 221-233 
    ISSN: 1573-1111
    Keywords: extraction ; perrhenate ; calix[4]arene ; crystal structure
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    Topics: Chemistry and Pharmacology
    Notes: Abstract The extraction of perrhenate with 25,26,27,28-tetrakis[(ethoxycarbonyl)methoxy]-p-tert-butylcali x[4]arene ( L) into 1,2-dichloroethane was investigated. The presence of Na+ in the aqueous phase is necessary for the extraction. The extraction equilibrium has been established and the thermodynamic quantities ΔH°, TΔS° and log Kex are -61.3 kJ/mol, -41.4 kJ/mol and 3.69, respectively. The effect of diverse ions on the extraction of ReO4- was studied. The corresponding extracted complex [Na L]ReO4.H2O was prepared and characterized by EA, IR and X-ray structure analysis. The complex crystallizes in the tetragonal space group P4ncc with a = b = 14.735(3), c = 29.094(3) Å, V = 6316(2) Å3, Z = 4.
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  • 61
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    Journal of inclusion phenomena and macrocyclic chemistry 34 (1999), S. 267-276 
    ISSN: 1573-1111
    Keywords: tetraoxaparacyclophane complex ; preparation ; crystal structure ; clathrate
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    Topics: Chemistry and Pharmacology
    Notes: Abstract The structure of the 2:3 complex between cyclophane 1 and para-xylene has been determined by a single crystal X-ray diffraction study at 143 K. One para-xylene molecule is enclosed within the cavity formed by two molecules of the host cyclophane; this ensemble displays crystallographic inversion symmetry. The other independent para-xylene molecule is located on a general position in the intermolecular cavities of the crystal lattice. The complex crystallizes in the triclinic space group P(-1) with a = 10β = 89.51(3), γ = 87.26(2)°, and Z = 1. Refinement based on 7539 unique reflections led to a final R(F) value of 0.0609.
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  • 62
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    Journal of inclusion phenomena and macrocyclic chemistry 35 (1999), S. 131-138 
    ISSN: 1573-1111
    Keywords: C-undecylcalix[4]resorcinarene ; crystal structure ; dioxane solvation ; exo molecular complex
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    Topics: Chemistry and Pharmacology
    Notes: Abstract The crystal structure of the molecular complex of C-undecylcalix[4]resorcinarene with dioxane has been determined by X-ray analysis. The asymmetric unit contains one host and four guest molecules. The calix[4]resorcinarene moiety adopts a bowl conformation with C4v symmetry. Four undecyl chains are axially oriented. Calix molecules are packed in a bowl-to-bowl fashion with alternating hydrophilic and hydrophobic layers. One of the ‘hydrophilic’ dioxane molecules is located at the rim of the calix moiety and is hydrogen bonded to the other one. There is no interaction to attract, or direct the dioxane molecule into the interior of the cavity. There is an exo complex formed. The dioxane molecules – located in the hydrophobic part – are highly disordered.
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  • 63
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    Journal of inclusion phenomena and macrocyclic chemistry 29 (1997), S. 335-346 
    ISSN: 1573-1111
    Keywords: Glycophane ; macrocycle ; carbohydrate ; crystal structure
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    Topics: Chemistry and Pharmacology
    Notes: Abstract Preparation of two new glycophanes is reported. These compounds arecomprised of two glucose molecules linked by hydrocarbon units at the 1,1′ and 3, 3′ or 3, 3′ and 6, 6′ positions. Thecrystal structure of one of the glycophanes is also described.
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  • 64
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    Journal of inclusion phenomena and macrocyclic chemistry 30 (1998), S. 13-19 
    ISSN: 1573-1111
    Keywords: THF clathrate ; Schiff base macrocycle ; crystal structure
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    Topics: Chemistry and Pharmacology
    Notes: Abstract A new clathrate inclusion compound of 2,3:11,12:20,21:29,30-tetrabenzo-1,13,16,19,31,34-hexaoxa-5,6,8,9,23,24,26,27- octaaza-7,25-dithioketone-2,3:4,5:9,10:11,12:22,23:27,28:29,30-cyclo-[36]ene([ 36]eneO6N8), which contains THF, has been prepared and crystallizes in the monoclinic space group P21/n with a = 9.829(5)Å, b = 24.23(1)Å, c = 10.181(9)Å, β = 92.93(5)-. Each unit cell contains two [36]ene-O6N8 molecules and four THF molecules. The [36]ene-O6N8 molecule lies on the crystallographic centre of symmetry and a pair of the THF molecules with half-chair conformation are located within rectangular channels formed by the macrocycle molecules.
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  • 65
    ISSN: 1573-9171
    Keywords: molecular structure ; conformational analysis ; crystal structure ; X-ray structural analysis ; molecular mechanics ; (−)-3-(4-bromobenzylidene)-l-isopropyl-2-methoxy-4-methylcyclohexene
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract (−)-3-(4-Bromobenzylidene)-1-isopropyl-2-methoxy-4-methylcyclohexene, capable of inducing spiral supramolecular ordering when introduced to nematic and some smectic mesophases, has been studied by an X-ray structural analysis. The crystals are orthorhombic; at 20 °Ca = 6.055(1),b = 13.282(3),c=20.734(4) Å,V=1668(1) Å3,d calc = 1.380 g cm−3, space groupP2 12121 Z=4. The cyclohexene ring has a conformation intermediate between a sofa and a half-chair. The methyl and methoxyl groups are in asyn orientation with respect to the mean plane of the cycle. The angle between the plane of the aryl substituent and the exocyclic double bond is 33°. The observed distortions of bond angles at unsaturated carbon atoms are typical of derivatives of benzylidenecyclohexene. Molecular mechanics calculations demonstrated that the conformation observed in the crystalline state is not the most favorable, and this conformation is stabilized through intermolecular interactions upon stacking in crystals. It was shown that the relative orientation of the methyl and methoxyl groups as well as the orientation of the aryl substituent substantially affect the conformation of the cyclohexene ring.
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  • 66
    ISSN: 1573-9171
    Keywords: stereoisomeric 2-(1′-biphenyl-4-yl-1′-hydroxy)methyl-p-menthan-3-ones ; molecular structure ; X-ray structural analysis ; crystal structure ; conformational analysis ; molecular mechanics ; hydrogen bond ; induced cholesteric liquid crystals ; twisting power
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract It has been established by X-ray structural analysis that 2-(1′-biphenyl-4-yl-1′-hydroxy)methyl-p-menthan-3-one, one of the products of the reaction of (−)-menthone triisopropyloxytitanium enolate with 4-phenylbenzaldehyde, has a 1R,2S,4S,1′S configuration. In crystals, this β-hydroxyketone adopts a chair conformation with equatorial methyl and isopropyl groups and an axial 2-(1′-biphenyl-4-yl-1′-hydroxy)methyl substituent. Unlike the stereoisomeric compound with the 1R,2S,4S,1′S configuration, the exocyclic fragment of which has an intramolecular 〉C=O...H-O- hydrogen bond in crystals and solutions, in the crystals of the 1R,2S,4S,1′S ketol under study, molecules are linked by a network of cooperative -O-H...O-H...O-H... hydrogen bonds. Based on the results of molecular mechanics calculations and experimental data of1H NMR and IR spectroscopy, conformations of molecules of this compound, which are in equilibrium in solution, have been characterized. Based on data on spatial structures of stereoisomeric β-hydroxyketones and the character of H-bonds formed by these compounds, the characteristic features of the effect of these chiral alloying additives on the supramolecular structure and macroscopic properties of liquid crystalline systems have been interpreted.
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