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  • American Chemical Society  (273,334)
  • Cell Press  (30,030)
  • ELSEVIER SCIENCE BV
  • 2020-2023  (33)
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  • 1
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    ELSEVIER SCIENCE BV
    In:  EPIC3Ecological Modelling, ELSEVIER SCIENCE BV, 220(18), pp. 2173-2186, ISSN: 0304-3800
    Publication Date: 2018-02-16
    Description: We present a five-year (1997-2001) numerical simulation of daily mean chlorophyll a concentrations at station Geesthacht Weir on the lower Elbe River (Germany) using an extremely simple Lagrangian model driven by (a) water discharge, global radiation, water temperature, and (b) silica observations at station Schmilka in the upper reach of the Elbe River. Notwithstanding the lack of many mechanistic details, the model is able to reproduce observed chlorophyll a variability surprisingly well, including a number of sharp valleys and ascents/descents in the observed time series. The model's success is based on the assumption of three key effects: prevailing light conditions, sporadic limitation of algal growth due to lack of silica and algae loss rates that increase above an empirically specified temperature threshold of 20 degrees C. Trimmed-down model versions are studied to analyse the model's success in terms of these mechanisms. In each of the five years the model consistently fails, however, to properly simulate characteristic steep increases of chlorophyll a concentrations after pronounced spring minima. Curing this model deficiency by global model re-calibration was found to be impossible. However, suspension of silica consumption by algae for up to 10 days in spring is shown to serve as a successful placeholder for processes that are disregarded in the model but apparently play an important role in the distinctly marked period of model failure. For the remainder of the year the very simple model was found to be adequate
    Repository Name: EPIC Alfred Wegener Institut
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  • 2
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    ELSEVIER SCIENCE BV
    In:  EPIC3Ecological Modelling, ELSEVIER SCIENCE BV, 213(2), pp. 229-244, ISSN: 0304-3800
    Publication Date: 2018-02-16
    Description: A simple Lagrangian water quality model was designed to investigate the hypothesis of sporadic silica limitations of diatom growth in the lower Elbe River in Germany. For each fluid parcel a limited reservoir of silica was specified to be consumed by diatoms. The model's simplicity notwithstanding, a set of six selected model parameters could not be fully identified from existing observations at one station. After the introduction of prior knowledge of the ranges of meaningful parameter values, calibration of the over-parameterised model manifested itself primarily in the generation of posterior parameter covariances. Estimations of the covariance matrix based on (a) second order partial derivatives of a quadratic cost function at its optimum and (b) Monte Carlo simulations exploring the whole space of parameter values gave consistent results. Diagonalisation of the covariance matrix yielded two linear parameter combinations that were most effectively controlled by data from periods with and without lack of silica, respectively. The two parameter combinations were identified as the essential inputs that govern the successful simulation of intermittently decreasing chlorophyll a concentrations in summer. A satisfactory simulation of the pronounced chlorophyll a minimum in spring, by contrast, was found to be beyond the means of the simple model.
    Repository Name: EPIC Alfred Wegener Institut
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  • 3
    Publication Date: 2017-04-04
    Description: Red Pompeian paintings, very famous for their deep intensity, are currently suffering from darkening. The origins of this darkening degradation are not clearly identified yet and remain a major issue for curators. In the specific case of cinnabar (HgS)-based red pigment, a photoinduced conversion into black metacinnabar is usually suspected. This work is focused on the blackening of red cinnabar paintings coated on a sparry calcite mortar. Different samples exhibiting different levels of degradation were selected upon visual observations and analyzed by synchrotron-based microanalytical techniques. Atomic and molecular compositions of the different debased regions revealed two possible degradation mechanisms. On one hand, micro X-ray fluorescence elemental maps show peculiar distributions of chlorine and sulfur. On the other hand, X-ray absorption spectroscopy performed at both Cl and S K-edges confirms the presence of characteristic degradation products: (i) Hg- Cl compounds (e.g., corderoite, calomel, and terlinguaite), which may result from the reaction with exogenous NaCl, in gray areas; (ii) gypsum, produced by the calcite sulfation, in black coatings. Metacinnabar is never detected. Finally, a cross section was analyzed to map the in-depth alteration gradient. Reduced and oxidized sulfur distributions reveal that the sulfated black coating consists of a 5-ím-thick layer covering intact cinnabar.
    Description: Published
    Description: 7484-7492
    Description: reserved
    Keywords: Microspectroscopy Analysis ; 05. General::05.09. Miscellaneous::05.09.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 4
    Publication Date: 2019-08-23
    Repository Name: EPIC Alfred Wegener Institut
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  • 5
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    ELSEVIER SCIENCE BV
    In:  EPIC3Marine Geology, ELSEVIER SCIENCE BV, 254(3-4), pp. 197-215, ISSN: 0025-3227
    Publication Date: 2019-07-17
    Description: We studied the impact of the last glacial (late Weichselian) sea level cycle on sediment architecture in theinner Kara Sea using high-resolution acoustic sub-bottom profiling. The acoustic lines were ground-truthedwith dated sediment cores. Furthermore we refined the location of the eastern LGM ice margin, by new subbottom profiles. New model results of post-Last Glacial Maximum (LGM) isostatic rebound for this area allowa well-constrained interpretation of acoustic units in terms of sequence stratigraphy. The lowstand (orregressive) system tract sediments are absent but are represented by an unconformity atop of Pleistocenesediments on the shelf and by a major incised dendritic paleo-river network. The subsequent transgressiveand highstand system tracts are best preserved in the incised channels and the recent estuaries while onlyminor sediment accumulation on the adjacent shelf areas is documented. The Kara Sea can be subdividedinto three areas: estuaries (A), the shelf (B) and (C) deeper lying areas that accumulated a total of 114 x1010 t of Holocene sediments.
    Repository Name: EPIC Alfred Wegener Institut
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  • 6
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    ELSEVIER SCIENCE BV
    In:  EPIC3Earth-Science Reviews, ELSEVIER SCIENCE BV, 228, pp. 103987, ISSN: 0012-8252
    Publication Date: 2022-03-30
    Description: The seabed plays a key role in the marine carbon cycle as a) the terminal location of aerobic oxidation of organic matter, b) the greatest anaerobic bioreactor, and c) the greatest repository for reactive organic carbon on Earth. We compiled data on the oxygen uptake of marine sediments with the objective to understand the constraints on mineralization rates of deposited organic matter and their relation to key environmental parameters. The compiled database includes nearly 4000 O 2 uptake data and is available as supplementary material. It includes also information on bottom water O 2 concentration, O 2 penetration depth, geographic position, water depth, and full information on the data sources. We present the different in situ and ex situ approaches to measure the total oxygen uptake (TOU) and the diffusive oxygen uptake (DOU) of sediments and discuss their robustness towards methodological errors and statistical uncertainty. We discuss O 2 transport through the benthic and diffusive boundary layers, the diffusion- and fauna-mediated O 2 uptake, and the coupling of aerobic respiration to anaerobic processes. Five regional examples are presented to illustrate the diversity of the seabed: Eutrophic seas, oxygen minimum zones, abyssal plains, mid-oceanic gyres, and hadal trenches. A multiple correlation analysis shows that seabed O 2 uptake is primarily controlled by ocean depth and sea surface primary productivity. The O2 penetration depth scales with the DOU according to a power law that breaks down under the abyssal ocean gyres. The developed multiple correlation model was used to draw a global map of seabed O2 uptake rates. Respiratory coefficients, differentiated for depth regions of the ocean, were used to convert the global O 2 uptake to organic carbon oxidation. The resulting global budget shows an oxidation of 212 Tmol C yr − 1 in marine sediments with a 5-95% confidence interval of 175-260 Tmol C yr − 1 . A comparison with the global flux of particulate organic carbon (POC) from photic surface waters to the deep sea, determined from multiple sediment trap studies, suggests a deficit in the sedimentation flux at 2000 m water depth of about 70% relative to the carbon turnover in the underlying seabed. At the ocean margins, the flux of organic carbon from rivers and from vegetated coastal ecosystems contributes greatly to the budget and may even exceed the phytoplankton production on the inner continental shelf.
    Repository Name: EPIC Alfred Wegener Institut
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  • 7
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    ELSEVIER SCIENCE BV
    In:  EPIC3Aquaculture, ELSEVIER SCIENCE BV, 254(1-4), pp. 714-729, ISSN: 0044-8486
    Publication Date: 2015-06-25
    Description: For most fish species raised in marine aquaculture, the use of live feeds cannot be replaced by formulated diets. Artemia nauplii and rotifers are still the most commonly used live feeds. A good alternative lies in the use of copepods which could lead to the cultivation of new fish species. Cold stored subitaneous eggs from the continuously cultured calanoid copepod Acartia tonsa were used to investigate the effect of storage upon the viability of the eggs, the development of the copepod community originating from the cold stored eggs. Finally a 3 days snapshot of the egg production of the first generation of females was followed. This was done in order to develop a database usable within copepod dependent hatcheries. The viability of cold stored A. tonsa eggs remained high (〉 70% hatching rate) for 11 months of storage. Generally, the period of storage was observed to decrease the viability (hatching rate) of the eggs and no hatching was observed after twenty months of cold storage. Hatched populations of copepods experienced increased mortality rate with longer storage of the eggs from which they originated. This mortality ranged from 0.035 to 0.13 d− 1 for non-stored (fresh) and 12 months stored eggs, respectively. However, all copepod communities originating from fresh to 12 months stored eggs reached adulthood. Additionally, the egg production from the stored generation was apparently normal and the viability of their eggs was not statistically different when compared to productions from non-stored communities. Contents of total fatty acids decreased during the storage period. Contents of free amino acids were not statistically different for eggs cold stored up to 12 months, but had decreased severely by 20 months. In conclusion, we consider it safe to store the eggs for up to one year at 2–3 °C during which the eggs retain their viability and biochemical composition. Cold storage of calanoid copepod eggs is relevant for aquaculture as inoculum for culturing live food.
    Repository Name: EPIC Alfred Wegener Institut
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  • 8
    Publication Date: 2022-02-26
    Description: ARTICLE INFO Keywords: Amazonia GDGT Amazon River Biomarkers Compound-specific isotopes N-Alkanes Paleoclimate proxies Plant waxes ABSTRACT Lipid biomarker proxies from terrigenous sediments have been extensively used to understand variations in paleoenvironmental conditions, but many of the mechanisms affecting these proxies during riverine transport are still poorly understood. Here, we analyze glycerol dialkyl glycerol tetraether (GDGT) distributions and n-alkane isotopic compositions of soils and sediments from the Amazon River Basin. Our dataset includes suspended sediments of the Amazon River and its main tributaries, as well as soils and sediments of the Xingu River, a large clearwater tributary draining the easternmost part of the Amazon River Basin. Our sampling design aimed at understanding the processes behind spatially distinct GDGT distributions and n-alkane isotopic signatures across lowland Amazonia. Gradual changes in the fractional abundances of isoprenoid GDGTs and in 5- and 6- methyl branched GDGT ratios in suspended sediments of the Amazon River towards its mouth suggest that riverine production is an increasingly important control on the distribution of GDGTs in the lower parts of the system, while values from the western parts are more in line with a dominant soil sourcing. In the Xingu River, indices based on the fractional abundances of branched GDGTs and long-chain n-alkanes demonstrate a strong contri- bution of terrestrial organic material during the high-water season and an important aquatic component during low-water season. Meanwhile, average stable carbon (δ13C) and hydrogen (δD) isotopic signatures of long-chain n-alkanes in soils, riverbed and suspended sediments of the Xingu River are similar and reinforce the relatively conservative behaviour of these proxies within large river systems. The average compound-specific δ13C signa- tures of sediments in the Xingu River are within the expected range for C3 vegetation and do not seem to capture the signals from the nearby deforested areas. n-Alkanes δD signals in the Xingu Basin are similar to values ob- tained in the Amazon River mouth and indicate that n-alkanes sourced from easternmost Amazonian lowlands may predominate over signals from western areas.
    Repository Name: EPIC Alfred Wegener Institut
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  • 9
    Publication Date: 2022-01-07
    Description: Microplastic (MP) pollution has been found in the Southern Ocean surrounding Antarctica, but many local regions within this vast area remain uninvestigated. The remote Weddell Sea contributes to the global thermohaline circulation, and one of the two Antarctic gyres is located in that region. In the present study, we evaluate MP (〉300 μm) concentration and composition in surface (n = 34) and subsurface water samples (n = 79, ∼11.2 m depth) of the Weddell Sea. All putative MP were analyzed by attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy. MP was found in 65% of surface and 11.4% of subsurface samples, with mean (±standard deviation (SD)) concentrations of 0.01 (±0.01 SD) MP m–3 and 0.04 (±0.1 SD) MP m–3, respectively, being within the range of previously reported values for regions south of the Polar Front. Additionally, we aimed to determine whether identified paint fragments (n = 394) derive from the research vessel. Environmentally sampled fragments (n = 101) with similar ATR-FTIR spectra to reference paints from the research vessel and fresh paint references generated in the laboratory were further subjected to micro-X-ray fluorescence spectroscopy (μXRF) to compare their elemental composition. This revealed that 45.5% of all recovered MP derived from vessel-induced contamination. However, 11% of the measured fragments could be distinguished from the reference paints via their elemental composition. This study demonstrates that differentiation based purely on visual characteristics and FTIR spectroscopy might not be sufficient for accurately determining sample contamination sources.
    Repository Name: EPIC Alfred Wegener Institut
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  • 10
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    ELSEVIER SCIENCE BV
    In:  EPIC3Dynamics of Atmospheres and Oceans, ELSEVIER SCIENCE BV, 93, pp. 101206, ISSN: 0377-0265
    Publication Date: 2022-02-15
    Description: This study evaluates the dependence of simulated surface air temperatures on model resolution and orography for the mid-Holocene. Sensitivity experiments with the atmospheric general circulation model ECHAM5 are performed with low (∼3.75°, 19 vertical levels) and high (∼1.1°, 31 vertical levels) resolution. Results are compared to the respective preindustrial runs. It is found that the large-scale temperature anomalies for the mid-Holocene (compared to preindustrial) are significantly different in the low- and high-resolution versions. For boreal winter, differences are mainly related to circulation changes caused by the response to thermal forcing in conjunction with orographic resolution. For summer, shortwave cloud radiative forcing emerges as an important factor. The anomaly differences (low minus high resolution version) in the Northern Hemisphere are regionally as large as the anomalous mid-Holocene temperature signals. Furthermore, they depend on the applied surface boundary conditions. We conclude that the resolution matters for the Northern Hemisphere response in mid-Holocene simulations, which should be taken into account in model-model and data-model comparisons.
    Repository Name: EPIC Alfred Wegener Institut
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  • 11
    Publication Date: 2022-02-15
    Description: Previous studies on surface temperature reconstructions for the last 2000 years (2 k) revealed a long-term cooling trend for the last millennium in comparison to the previous millennium. However, knowledge on the decadal- to centennial-scale variability in sea surface temperature and the underlying governing mechanisms throughout the period is limited. We reconstructed high-resolution continuous sea surface temperature changes over the last 2 k in the northwest Pacific margin based on the alkenone unsaturation index. Our alkenone temperature record revealed enhanced and more rapidly changing climate variability during the last millennium (approximately 1200–1850 Common Era) than during the previous millennium. Cold and hot extremes also occurred more frequently during the last millennium. The enhanced and rapidly changing climate variability appears to be associated with frequent volcanic eruptions and grand solar minima. The reconstructed surface temperature variability tends to be associated with variations in the East Asia summer monsoon and the Pacific Decadal Oscillation, implying that these variations are also enhanced in the last millennium than in the previous millennium.
    Repository Name: EPIC Alfred Wegener Institut
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  • 12
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    ELSEVIER SCIENCE BV
    In:  EPIC3Geomorphology, ELSEVIER SCIENCE BV, 413(108328), pp. 1-10, ISSN: 0169-555X
    Publication Date: 2022-07-13
    Description: Here we present dense acoustic and swath bathymetry data sets as well as geological age constraints that allow a new view on past glacial processes at the Siberian termination of Lomonosov Ridge in the Arctic Ocean between 81° and 84° 20′ N. Here, the seabed is marked by three sets of streamlined glacial lineations observed at present water depths of ~760 m to 1250 m. The shallower streamlined glacial lineations were likely formed during MIS 6 and the deeper ones during MIS 12. Other observations include recessional moraines and pockmarks on a flattened ridge crest. In the subsurface, an acoustically transparent unit above well stratified strata is interpreted as subglacial diamicton overlying pre-glacial sediments at an erosional contact. Furthermore, the diamicton is interpreted to have been deposited as lenses in glacially-eroded proximal settings. In contrast, some parts of the seafloor and subsurface show no glacial overprint in water depths as shallow as 819 m. To explain these findings, we propose that the Siberian termination of Lomonosov Ridge was covered by an ice mass of spatial and temporal variable thickness between ~780 to ~1250 m, that was likely composed of sea ice and thick icebergs calved from ice shelves.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 13
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Meaders, J. L., de Matos, S. N., & Burgess, D. R. A pushing mechanism for microtubule aster positioning in a large cell type. Cell Reports, 33(1), (2020): 108213, doi:10.1016/j.celrep.2020.108213.
    Description: After fertilization, microtubule (MT) sperm asters undergo long-range migration to accurately position pronuclei. Due to the large sizes of zygotes, the forces driving aster migration are considered to be from pulling on the astral MTs by dynein, with no significant contribution from pushing forces. Here, we re-investigate the forces responsible for sperm aster centration in sea urchin zygotes. Our quantifications of aster geometry and MT density preclude a pulling mechanism. Manipulation of aster radial lengths and growth rates, combined with quantitative tracking of aster migration dynamics, indicates that aster migration is equal to the length of rear aster radii, supporting a pushing model for centration. We find that dynein inhibition causes an increase in aster migration rates. Finally, ablation of rear astral MTs halts migration, whereas front and side ablations do not. Collectively, our data indicate that a pushing mechanism can drive the migration of asters in a large cell type.
    Description: We would like to thank Dr. Jesse Gatlin for sending us the Tau-mCherry fusion protein for imaging live MTs. We would also like to thank Dr. Timothy Mitchison, Dr. Christine Field, and Dr. James Pelletier for supplying us with CA4, p150-CC1, and EB1-GFP peptides, as well as for fruitful discussions. Finally, we would like to thank Dr. Charles Shuster and Leslie Toledo-Jacobo for constructive feedback when preparing the manuscript. We thank Bret Judson and the Boston College Imaging Core for infrastructure and support. This material is based upon work supported by NSF grant no. 124425 to D.R.B.
    Keywords: Dynein ; Aster ; Microtubule ; Centrosome ; Pronucleus ; Fertilization ; Aster position
    Repository Name: Woods Hole Open Access Server
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  • 14
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Stolp, Z. D., Kulkarni, M., Liu, Y., Zhu, C., Jalisi, A., Lin, S., Casadevall, A., Cunningham, K. W., Pineda, F. J., Teng, X., & Hardwick, J. M. Yeast cell death pathway requiring AP-3 vesicle trafficking leads to vacuole/lysosome membrane permeabilization. Cell Reports, 39(2), (2022): 110647, https://doi.org/10.1016/j.celrep.2022.110647.
    Description: Unicellular eukaryotes have been suggested as undergoing self-inflicted destruction. However, molecular details are sparse compared with the mechanisms of programmed/regulated cell death known for human cells and animal models. Here, we report a molecular cell death pathway in Saccharomyces cerevisiae leading to vacuole/lysosome membrane permeabilization. Following a transient cell death stimulus, yeast cells die slowly over several hours, consistent with an ongoing molecular dying process. A genome-wide screen for death-promoting factors identified all subunits of the AP-3 complex, a vesicle trafficking adapter known to transport and install newly synthesized proteins on the vacuole/lysosome membrane. To promote cell death, AP-3 requires its Arf1-GTPase-dependent vesicle trafficking function and the kinase Yck3, which is selectively transported to the vacuole membrane by AP-3. Video microscopy revealed a sequence of events where vacuole permeability precedes the loss of plasma membrane integrity. AP-3-dependent death appears to be conserved in the human pathogenic yeast Cryptococcus neoformans.
    Description: Funding sources: National Institutes of Health, United States grants AI144373 and NS127076 (J.M.H.), AI115016 and AI153414 (K.W.C.), and AI052733, AI152078, and HL059842 (A.C.); National Natural Science Foundation of China 31970550; and the Priority Academic Program Development of the Jiangsu Higher Education Institutes (X.T.).
    Keywords: Yeast ; Programmed cell death ; Vesicle trafficking ; AP-3 ; Vacuole ; Cryptococcus ; Yck3 ; Regulated cell death ; Lysosome ; Vacuolar membrane permeabilization
    Repository Name: Woods Hole Open Access Server
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  • 15
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Walsh, A. N., Reddy, C. M., Niles, S. F., McKenna, A. M., Hansel, C. M., & Ward, C. P. Plastic formulation is an emerging control of its photochemical fate in the ocean. Environmental Science & Technology, 55(18), (2021): 12383–12392, https://doi.org/10.1021/acs.est.1c02272.
    Description: Sunlight exposure is a control of long-term plastic fate in the environment that converts plastic into oxygenated products spanning the polymer, dissolved, and gas phases. However, our understanding of how plastic formulation influences the amount and composition of these photoproducts remains incomplete. Here, we characterized the initial formulations and resulting dissolved photoproducts of four single-use consumer polyethylene (PE) bags from major retailers and one pure PE film. Consumer PE bags contained 15–36% inorganic additives, primarily calcium carbonate (13–34%) and titanium dioxide (TiO2; 1–2%). Sunlight exposure consistently increased production of dissolved organic carbon (DOC) relative to leaching in the dark (3- to 80-fold). All consumer PE bags produced more DOC during sunlight exposure than the pure PE (1.2- to 2.0-fold). The DOC leached after sunlight exposure increasingly reflected the 13C and 14C isotopic composition of the plastic. Ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry revealed that sunlight exposure substantially increased the number of DOC formulas detected (1.1- to 50-fold). TiO2-containing bags photochemically degraded into the most compositionally similar DOC, with 68–94% of photoproduced formulas in common with at least one other TiO2-containing bag. Conversely, only 28% of photoproduced formulas from the pure PE were detected in photoproduced DOC from the consumer PE. Overall, these findings suggest that plastic formulation, especially TiO2, plays a determining role in the amount and composition of DOC generated by sunlight. Consequently, studies on pure, unweathered polymers may not accurately represent the fates and impacts of the plastics entering the ocean.
    Description: Funding was provided by the Seaver Institute, the Gerstner Family Foundation, Woods Hole Oceanographic Institution, and the National Science Foundation Graduate Research Fellowship Program (A.N.W.). The Ion Cyclotron Resonance user facility at the National High Magnetic Field Laboratory is supported by the National Science Foundation Division of Chemistry and Division of Materials Research through DMR-1644779 and the State of Florida.
    Keywords: Plastic pollution ; Marine debris ; Additives ; Dissolved organic carbon ; Photochemical oxidation ; FT-ICR-MS ; Titanium dioxide
    Repository Name: Woods Hole Open Access Server
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  • 16
    Publication Date: 2022-10-14
    Description: With a growing concern over rapid Antarctic ice loss in recent years, the Amundsen Sea, one of the fastest-melting areas in Antarctica, currently becomes a hotspot for the Earth sciences in the context of its linkage to global climate. As a center of strong physical and biological coupling processes, polynyas of the Amundsen Sea could act as sentinels of changes in atmosphere–ice–ocean interactions, offering a unique perspective into its sensitivity to climate variability. Here, we present a new, multiproxy-based high-resolution sedimentary record from the Amundsen Sea polynya, which provides new insights into environmental conditions of the region over the last 350 years and their linkages to climatic factors. Our results show that the polynya witnessed step-wise environmental shifts in parallel with the phases and strength of large-scale climate patterns, i.e., the Southern Annular Mode (SAM) and El Niño–Southern Oscillation (ENSO). Notably, intersite correlation of on-shelf Circumpolar Deep Water (CDW) intrusion signals at different locals suggests that the CDW may have gained increased access to the shelves at the time of a strong coupling of positive SAM and El Niño states. We tentatively speculate that anomalous large-scale atmospheric and oceanic circulation patterns over the Southern Hemisphere, forced by increasing greenhouse gas levels, were strongly involved in the mid-20th century CDW invigoration, which may be greater in scale that goes well beyond the Amundsen Sea region. This result is relevant to the current debate on spatial heterogeneity in the timing and phasing of major climatic events in Antarctica, underscoring an unambiguous connection of the Antarctic climate state to the large-scale ocean–atmosphere reorganizations. Our study also extends a growing evidence that today's global warming trend is expected to have a severe effect on future configuration of Antarctic continental ice-shelf environment.
    Repository Name: EPIC Alfred Wegener Institut
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  • 17
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gosselin, K. M., Nelson, R. K., Spivak, A. C., Sylva, S. P., Van Mooy, B. A. S., Aeppli, C., Sharpless, C. M., O’Neil, G. W., Arrington, E. C., Reddy, C. M., & Valentine, D. L. Production of two highly abundant 2-methyl-branched fatty acids by blooms of the globally significant marine cyanobacteria Trichodesmium erythraeum. ACS Omega, 6(35), (2021): 22803–22810, https://doi.org/10.1021/acsomega.1c03196.
    Description: The bloom-forming cyanobacteria Trichodesmium contribute up to 30% to the total fixed nitrogen in the global oceans and thereby drive substantial productivity. On an expedition in the Gulf of Mexico, we observed and sampled surface slicks, some of which included dense blooms of Trichodesmium erythraeum. These bloom samples contained abundant and atypical free fatty acids, identified here as 2-methyldecanoic acid and 2-methyldodecanoic acid. The high abundance and unusual branching pattern of these compounds suggest that they may play a specific role in this globally important organism.
    Description: This work was funded with grants from the National Science Foundation grants OCE-1333148, OCE-1333162, and OCE-1756254 and the Woods Hole Oceanographic Institution (IR&D). GCxGC analysis made possible by WHOI’s Investment in Science Fund.
    Keywords: Lipids ; Alkyls ; Bacteria ; Genetics ; Chromatography
    Repository Name: Woods Hole Open Access Server
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  • 18
    Publication Date: 2022-05-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Mazzotta, M. G., Reddy, C. M., & Ward, C. P. Rapid degradation of cellulose diacetate by marine microbes. Environmental Science & Technology Letters, 9(1), (2022): 37-41. https://doi.org/10.1021/acs.estlett.1c00843.
    Description: The persistence of cellulose diacetate (CDA), a biobased plastic used in textiles and single-use consumer products, in the ocean is currently unknown. Here, we probe the disintegration and degradation of CDA-based materials (25 μm films, 510 μm foam, and 97 g/m2 fabric) by marine microbes in a continuous flow seawater mesocosm. Photographic evidence and mass loss measurements demonstrate that CDA-based materials disintegrate in months. Disintegration is marked by the increasing esterase and cellulase activity of the biofilm community, suggesting that marine microbes degrade CDA. The natural abundance stable (13C) and radiocarbon (14C) isotopic signature of carbon dioxide respired during short-term bottle incubations confirms the rapid degradation of both acetyl and cellulosic components of CDA by seawater microbial communities. These findings challenge the paradigm set by governmental agencies and advocacy groups that CDA-based materials persist in the ocean for decades, and represent a positive step toward identifying high-utility, biobased plastics with low environmental persistence.
    Description: M.G.M., C.M.R., and C.P.W. thank Eastman Chemical Co. and Woods Hole Oceanographic Institution (WHOI) for scientific and financial support.
    Repository Name: Woods Hole Open Access Server
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  • 19
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Xie, L., Liu, X., Caratenuto, A., Tian, Y., Chen, F., DeGiorgis, J. A., Wan, Y., & Zheng, Y. Environmentally friendly and efficient hornet nest envelope-based photothermal absorbers. Acs Omega, 6(50), (2021): 34555–34562, https://doi.org/10.1021/acsomega.1c04851.
    Description: Water shortage is a critical global issue that threatens human health, environmental sustainability, and the preservation of Earth’s climate. Desalination from seawater and sewage is a promising avenue for alleviating this stress. In this work, we use the hornet nest envelope material to fabricate a biomass-based photothermal absorber as part of a desalination isolation system. This system realizes an evaporation rate of 3.98 kg m–2 h–1 under one-sun illumination, with prolonged evaporation rates all above 4 kg m–2 h–1. This system demonstrates a strong performance of 3.86 kg m–2 h–1 in 3.5 wt % saltwater, illustrating its effectiveness in evaporation seawater. Thus, with its excellent evaporation rate, great salt rejection ability, and easy fabrication approach, the hornet nest envelope constitutes a promising natural material for solar water treatment applications.
    Description: The authors acknowledge the support from the National Science Foundation, USA, through grant number CBET-1941743 and the National Science Foundation under EPSCoR Cooperation Agreement OIA-1655221.
    Repository Name: Woods Hole Open Access Server
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  • 20
    Publication Date: 2022-08-30
    Description: Most tropical corals live in symbiosis with Symbiodiniaceae algae whose photosynthetic production of oxygen (O2) may lead to excess O2 in the diffusive boundary layer (DBL) above the coral surface. When flow is low, cilia-induced mixing of the coral DBL is vital to remove excess O2 and prevent oxidative stress that may lead to coral bleaching and mortality. Here, we combined particle image velocimetry using O2-sensitive nanoparticles (sensPIV) with chlorophyll (Chla)-sensitive hyperspectral imaging to visualize the microscale distribution and dynamics of ciliary flows and O2 in the coral DBL in relation to the distribution of Symbiodiniaceae Chla in the tissue of the reef building coral, Porites lutea. Curiously, we found an inverse relation between O2 in the DBL and Chla in the underlying tissue, with patches of high O2 in the DBL above low Chla in the underlying tissue surrounding the polyp mouth areas and pockets of low O2 concentrations in the DBL above high Chla in the coenosarc tissue connecting neighboring polyps. The spatial segregation of Chla and O2 is related to ciliary-induced flows, causing a lateral redistribution of O2 in the DBL. In a 2D transport-reaction model of the coral DBL, we show that the enhanced O2 transport allocates parts of the O2 surplus to areas containing less chla, which minimizes oxidative stress. Cilary flows thus confer a spatially complex mass transfer in the coral DBL, which may play an important role in mitigating oxidative stress and bleaching in corals.
    Repository Name: EPIC Alfred Wegener Institut
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  • 21
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    Unknown
    ELSEVIER SCIENCE BV
    In:  EPIC3Earth-Science Reviews, ELSEVIER SCIENCE BV, 221(103803), ISSN: 0012-8252
    Publication Date: 2022-08-21
    Description: Benthic organisms and their bioturbation activities have a profound effect on a multitude of sediment properties. While many studies have already explored benthic impacts at small temporal and spatial scales, little is known on how the small-scale effects accumulate and interactively guide large-scale (km-scale) morphological evolution. Here we firstly summarize the most important processes of benthos affecting sediment stability and then explore existing biomorphodynamic modeling studies both at small- and large-scales. In general, microbenthos (body size 〈0.1 mm) mainly stabilizes sediments while meio- (0.1–1 mm) and macrobenthos (〉1 mm) may stabilize or destabilize sediments. Among all types of sediment, fine-grained fraction (silt and clay) is most sensitive to the impact of benthos. Benthic organisms have the capability to mediate sediment transport and sedimentation patterns beyond their habitats on the long-term and over a large-scale. However, so far, numerical models evaluating benthic impact are limited to explorative studies and have not reached a stage where they can be used for predictive modeling. The barriers hindering a further development of biomorphodynamic models include not only limited understanding of fundamental biological/bio-physical processes affecting morphological development and dynamic feedback loops among them but also a shortage of data for model calibration and confirmation of simulation results. On the other hand, thriving for higher model complexity does not necessarily lead to better performance. Before conducting biomorphodynamic modeling, researchers must figure out which questions can be answered in a meaningful sense with simulation results that can be compared with observations and which level of modeling complexity is sufficient for that purpose.
    Repository Name: EPIC Alfred Wegener Institut
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  • 22
    Publication Date: 2022-06-14
    Description: The 318-m long sediment record from Lake El'gygytgyn, NE Russia situated in the present-day herb tundra zone, provides a unique archive of high Arctic environmental changes since ca 3.6 million years ago (Ma). This paper focuses on pollen-derived vegetation change during the mid-Pliocene Warm Period (mPWP) and in particular during Marine Isotope Stage (MIS) M2, which is known torepresent the coldest interval ofthe Pliocene. Building on initial pollen studies, we provide a more complete record and a more detailed discussion of climaticallydriven vegetation and environmental changes in the northeastern Russian Arctic, spanning the 203-thousandyear interval between 3.383 and 3.180 Ma ago. Pine-spruce-fir-larch-Douglas fir forests dominated the area around Lake El'gygytgyn between 3.383 and 3.330 Ma (MIS MG4 - MIS MG2). Colder and drier climate caused a decrease of coniferous forests and widespread Sphagnum habitats around the lake between 3.370 and 3.357 Ma. After 3.3 Ma, the presence of spruce, fir and Douglas fir decreased again. A very pronounced cooling took place at the first half of MIS M2 (3.312–3.283 Ma), when treeless tundra- and steppe-like habitats became common in the regional vegetation. Climate conditions were similar or only slightly warmer and wetter to those of the Holocene. Numerous coprophilous fungi spores identified in the MIS M2 pollen samples suggest the presence of grazing mammals around the lake. Larch-pine forests with some spruce started to dominate the area again after ca. 3.282 Ma, thus pointing to a significant climate amelioration during the mPWP. However, the forested area decreased, while herb- and shrub-dominated vegetation spread again during MIS KM6 (especially 3.235–3.223 Ma), suggesting a noticeable climatic deterioration and relatively cold and dry conditions.
    Repository Name: EPIC Alfred Wegener Institut
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  • 23
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in McLean, C., & Kujawinski, E. B. AutoTuner: high fidelity and robust parameter selection for metabolomics data processing. Analytical Chemistry, 92(8), (2020): 5724-5732, doi:10.1021/acs.analchem.9b04804.
    Description: Untargeted metabolomics experiments provide a snapshot of cellular metabolism but remain challenging to interpret due to the computational complexity involved in data processing and analysis. Prior to any interpretation, raw data must be processed to remove noise and to align mass-spectral peaks across samples. This step requires selection of dataset-specific parameters, as erroneous parameters can result in noise inflation. While several algorithms exist to automate parameter selection, each depends on gradient descent optimization functions. In contrast, our new parameter optimization algorithm, AutoTuner, obtains parameter estimates from raw data in a single step as opposed to many iterations. Here, we tested the accuracy and the run-time of AutoTuner in comparison to isotopologue parameter optimization (IPO), the most commonly used parameter selection tool, and compared the resulting parameters’ influence on the properties of feature tables after processing. We performed a Monte Carlo experiment to test the robustness of AutoTuner parameter selection and found that AutoTuner generated similar parameter estimates from random subsets of samples. We conclude that AutoTuner is a desirable alternative to existing tools, because it is scalable, highly robust, and very fast (∼100–1000× speed improvement from other algorithms going from days to minutes). AutoTuner is freely available as an R package through BioConductor.
    Description: We thank Titus Brown and Ben Temperton for advice on the algorithm validation, Arthur Eschenlauer for constructive feedback on the software design, Krista Longnecker for continuous support and discussions, Gabriel Leventhal for mathematics advice, the users of AutoTuner for debugging help through Github, and David Angeles-Albores and two anonymous reviewers for critical feedback on the manuscript. Funding support included the National GEM Consortium and NSF graduate research program fellowships (C.M.) and grants from the MIT Microbiome Center (Award 6936800, E.B.K.) and the Simons Foundation (Award ID #509034, E.B.K.).
    Repository Name: Woods Hole Open Access Server
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  • 24
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Reusch, S., Biswas, A., Hirst, W. G., & Reber, S. Affinity purification of label-free tubulins from xenopus egg extracts. STAR Protocols, 1(3), (2020): 100151, doi:10.1016/j.xpro.2020.100151.
    Description: Cytoplasmic extracts from unfertilized Xenopus eggs have made important contributions to our understanding of microtubule dynamics, spindle assembly, and scaling. Until recently, these in vitro studies relied on the use of heterologous tubulin. This protocol allows for the purification of physiologically relevant Xenopus tubulins in milligram yield, which are a complex mixture of isoforms with various post-translational modifications. The protocol is applicable to any cell or tissue of interest. For complete details on the use and execution of this protocol, please refer to Hirst et al. (2020).
    Description: This article was prompted by our stay at the Marine Biological Laboratory (MBL), Woods Hole, MA, in the summer of 2016 funded by the Princeton-Humboldt Strategic Partnership Grant together with the lab of Sabine Petry (Princeton University). We are grateful to the National Xenopus Resource (NXR) for supplying frogs. For mass spectrometry, we would like to acknowledge the assistance of Benno Kuropka and Chris Weise from the Core Facility BioSupraMol supported by the Deutsche Forschungsgemeinschaft (DFG). We thank the Protein Expression Purification and Characterization (PEPC) facility at the MPI-CBG; in particular, we thank Aliona Bogdanova and Barbara Borgonovo. We thank all former and current members of the Reber lab for discussions and helpful advice, in particular Christoph Hentschel and Soma Zsoter for technical assistance. S.R. acknowledges funding from the IRI Life Sciences (Humboldt-Universität zu Berlin, Excellence Initiative/DFG). W.H. was supported by the Alliance Berlin Canberra co-funded by a grant from the Deutsche Forschungsgemeinschaft (DFG) for the International Research Training Group (IRTG) 2290 and the Australian National University.
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  • 25
    Publication Date: 2022-05-26
    Description: Author Posting. © American Chemical Society, 2020. This is an open access article published under an ACS AuthorChoice License. The definitive version was published in Chemical Research in Toxicology, 33(4), (2020): 860-879, doi:10.1021/acs.chemrestox.9b00476.
    Description: The Ah receptor (AHR) has been studied for almost five decades. Yet, we still have many important questions about its role in normal physiology and development. Moreover, we still do not fully understand how this protein mediates the adverse effects of a variety of environmental pollutants, such as the polycyclic aromatic hydrocarbons (PAHs), the chlorinated dibenzo-p-dioxins (“dioxins”), and many polyhalogenated biphenyls. To provide a platform for future research, we provide the historical underpinnings of our current state of knowledge about AHR signal transduction, identify a few areas of needed research, and then develop concepts such as adaptive metabolism, ligand structural diversity, and the importance of proligands in receptor activation. We finish with a discussion of the cognate physiological role of the AHR, our perspective on why this receptor is so highly conserved, and how we might think about its cognate ligands in the future.
    Description: This review is dedicated in memory of the career of Alan Poland, one of the truly great minds in pharmacology and toxicology. This work was supported by the National Institutes of Health Grants R35-ES028377, T32-ES007015, P30-CA014520, P42-ES007381, and U01-ES1026127, The UW SciMed GRS Program, and The Morgridge Foundation. The authors would like to thank Catherine Stanley of UW Media Solutions for her artwork.
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  • 26
    Publication Date: 2022-12-07
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in James, B., de Vos, A., Aluwihare, L., Youngs, S., Ward, C., Nelson, R., Michel, A., Hahn, M., & Reddy, C. Divergent forms of pyroplastic: lessons learned from the M/V X-Press Pearl ship fire. ACS Environmental Au, 2(5), (2022): 467–479, https://doi.org/10.1021/acsenvironau.2c00020.
    Description: In late May 2021, the M/V X-Press Pearl container ship caught fire while anchored 18 km off the coast of Colombo, Sri Lanka and spilled upward of 70 billion pieces of plastic or “nurdles” (∼1680 tons), littering the country’s coastline. Exposure to combustion, heat, chemicals, and petroleum products led to an apparent continuum of changes from no obvious effects to pieces consistent with previous reports of melted and burned plastic (pyroplastic) found on beaches. At the middle of this continuum, nurdles were discolored but appeared to retain their prefire morphology, resembling nurdles that had been weathered in the environment. We performed a detailed investigation of the physical and surface properties of discolored nurdles collected on a beach 5 days after the ship caught fire and within 24 h of their arrival onshore. The color was the most striking trait of the plastic: white for nurdles with minimal alteration from the accident, orange for nurdles containing antioxidant degradation products formed by exposure to heat, and gray for partially combusted nurdles. Our color analyses indicate that this fraction of the plastic released from the ship was not a continuum but instead diverged into distinct groups. Fire left the gray nurdles scorched, with entrained particles and pools of melted plastic, and covered in soot, representing partial pyroplastics, a new subtype of pyroplastic. Cross sections showed that the heat- and fire-induced changes were superficial, leaving the surfaces more hydrophilic but the interior relatively untouched. These results provide timely and actionable information to responders to reevaluate cleanup end points, monitor the recurrence of these spilled nurdles, gauge short- and long-term effects of the spilled nurdles to the local ecosystem, and manage the recovery of the spill. These findings underscore partially combusted plastic (pyroplastic) as a type of plastic pollution that has yet to be fully explored despite the frequency at which plastic is burned globally.
    Description: This work was supported by the Postdoctoral Scholar Program at the Woods Hole Oceanographic Institution (WHOI), with funding provided by the Weston Howland Jr. Postdoctoral Scholarship. Additional support was provided by the WHOI Marine Microplastics Catalyst Program, the WHOI Marine Microplastics Innovation Accelerator Program, the WHOI Investment in Science Fund, the March Marine Initiative (a program of March Limited, Bermuda), The Seaver Institute, Gerstner Philanthropies, the Wallace Research Foundation, the Richard Saltonstall Charitable Foundation, the Harrison Foundation, Hollis and Ermine Lovell Charitable Foundation, and the Richard Grand Foundation. AdV was supported by funding from the Schmidt Foundation.
    Keywords: Microplastic ; Resin pellets ; Pollution ; Additives ; Open burning ; Weathering ; Maritime accident
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  • 27
    Publication Date: 2022-11-03
    Description: This is the first study presenting temporal changes of the macrofauna biodiversity along the bathymetric gradient from the shelf to abyssal depths in the eastern Fram Striat. In this region, between 2004 and 2008, a significant increase in surface water temperature was observed due to the transport of Atlantic water from lower latitudes and was defined as a Warm Water Anomaly (WWA). Effects of the WWA in the eastern Fram Strait were observed across the entire food web, from the pelagic to the deep seafloor. The material for our study was collected before (in 2000) and after the WWA (in 2010 and 2017) at station depths ranging from 203 m to 5561 m. Samples of macrofauna and surface sediments were collected with use of a box corer to analyze species composition and functional traits, and environmental characteristics in sediments. We explore the influence of environmental changes on the structure (species composition and diversity) and functioning (functional trait composition and diversity) of macrofauna communities. An increase of primary production in surface waters during and after the WWA was reflected in a higher food availability at the seafloor from shelf to abyssal depths. Warming induced environmental changes led to an increase of macrofauna density and taxonomic diversity at all water depths. Macrofauna species composition significantly changed after the WWA. At all study sites, macrofauna functional diversity increased after the warm period. Functional trait composition changed significantly along the bathymetric transect. Despite changes in the taxonomic composition, macrofauna communities at the shallowest stations showed high functional redundancy, i.e., trait composition remained unchanged after the WWA. At water depths below 1500 m, where functional redundancy was significantly lower, functional trait composition changed significantly after the WWA. Our results suggest that macrofauna communities on the shelves are more resistant to environmental changes compared to deep-sea assemblages in the eastern Fram Strait.
    Repository Name: EPIC Alfred Wegener Institut
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  • 28
    Publication Date: 2022-11-07
    Description: Microplastics (MP) have been recorded in various environments around the globe. For a better understanding of distribution patterns and for providing a basis for risk assessments, detailed data on MP concentrations and polymer compositions are required. This study investigated the effluents of two German wastewater treatment plants (WWTP) monthly over one year, in order to better understand their temporal input of MP into the receiving river systems. MP item data down to 11 μm were obtained by means of Fourier Transform Infrared (FTIR) spectroscopy under the application of an improved polymer database. Complementary mass data were obtained by pyrolysis gas chromatography–mass spectrometry (Py-GC/MS) (for one WWTP). Both FTIR and Py-GC/MS analysis revealed a homogeneous polymer composition over the year, with a general dominance of polyolefins. Elevated MP item and mass concentrations (maximum: 3 × 104 items m−3 and 3.8 × 103 μg m−3) were observed during winter months and were accompanied by either heavy rainfall (increased discharge and total organic carbon) or elevated turbidity values. These observations emphasize the need for the assessment of background parameters in future MP monitoring studies. By providing monthly data over one year on MP items and masses in WWTP effluents, this study helps enhancing the understanding of temporal MP dynamics and can act as a valuable reference point for future assessments.
    Repository Name: EPIC Alfred Wegener Institut
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  • 29
    Publication Date: 2022-05-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Widner, B., Kido Soule, M. C., Ferrer-González, F. X., Moran, M. A., & Kujawinski, E. B. Quantification of amine- and alcohol-containing metabolites in saline samples using pre-extraction benzoyl chloride derivatization and ultrahigh performance liquid chromatography tandem mass spectrometry (UHPLC MS/MS). Analytical Chemistry, 93(11), (2021): 4809-4817, https://doi.org/10.1021/acs.analchem.0c03769.
    Description: Dissolved metabolites serve as nutrition, energy, and chemical signals for microbial systems. However, the full scope and magnitude of these processes in marine systems are unknown, largely due to insufficient methods, including poor extraction of small, polar compounds using common solid-phase extraction resins. Here, we utilized pre-extraction derivatization and ultrahigh performance liquid chromatography electrospray ionization tandem mass spectrometry (UHPLC-ESI-MS/MS) to detect and quantify targeted dissolved metabolites in seawater and saline culture media. Metabolites were derivatized with benzoyl chloride by their primary and secondary amine and alcohol functionalities and quantified using stable isotope-labeled internal standards (SIL-ISs) produced from 13C6-labeled benzoyl chloride. We optimized derivatization, extraction, and sample preparation for field and culture samples and evaluated matrix-derived biases. We have optimized this quantitative method for 73 common metabolites, of which 50 cannot be quantified without derivatization due to low extraction efficiencies. Of the 73 metabolites, 66 were identified in either culture media or seawater and 45 of those were quantified. This derivatization method is sensitive (detection limits = pM to nM), rapid (∼5 min per sample), and high throughput.
    Description: Funding included the Gordon and Betty Moore Foundation (Award GBMF5503 to M.A.M. and E.B.K.), Simons Foundation International (Award 409923 to E.B.K.), and the National Science Foundation (Award 1656311 to M.A.M.).
    Repository Name: Woods Hole Open Access Server
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  • 30
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hirst, W. G., Kiefer, C., Abdosamadi, M. K., Schäffer, E., & Reber, S. In Vitro reconstitution and imaging of microtubule dynamics by fluorescence and label-free microscopy. STAR Protocols, 1(3), (2020): 100177, doi:10.1016/j.xpro.2020.100177.
    Description: Dynamic microtubules are essential for many processes in the lives of eukaryotic cells. To study and understand the mechanisms of microtubule dynamics and regulation, in vitro reconstitution with purified components has proven a vital approach. Imaging microtubule dynamics can be instructive for a given species, isoform composition, or biochemical modification. Here, we describe two methods that visualize microtubule dynamics at high speed and high contrast: (1) total internal reflection fluorescence microscopy and (2) label-free interference reflection microscopy.
    Description: We thank the AMBIO imaging facility (Charité, Berlin) and Nikon at MBL for imaging support. We thank all former and current members of the Reber lab for discussion and helpful advice, in particular Christoph Hentschel and Soma Zsoter for technical assistance. S.R. acknowledges funding by the IRI Life Sciences (Humboldt-Universität zu Berlin, Excellence Initiative/DFG). W.H. was supported by the Alliance Berlin Canberra co-funded by a grant from the Deutsche Forschungsgemeinschaft (DFG) for the International Research Training Group (IRTG) 2290 and the Australian National University. C.K. thanks the Deutsche Forschungsgesellschaft (DFG, JA 2589/1-1). C.K. and M.A. thank Steve Simmert and Tobias Jachowski former and current members of the Schäffer lab.
    Keywords: Biophysics ; Cell Biology ; Microscopy
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  • 31
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Geisterfer, Z. M., Oakey, J., & Gatlin, J. C. . Microfluidic encapsulation of Xenopus laevis cell-free extracts using hydrogel photolithography. STAR Protocols, 1(3), (2020): 100221, doi:10.1016/j.xpro.2020.100221.
    Description: Cell-free extract derived from the eggs of the African clawed frog Xenopus laevis is a well-established model system that has been used historically in bulk aliquots. Here, we describe a microfluidic approach for isolating discrete, biologically relevant volumes of cell-free extract, with more expansive and precise control of extract shape compared with extract-oil emulsions. This approach is useful for investigating the mechanics of intracellular processes affected by cell geometry or cytoplasmic volume, including organelle scaling and positioning mechanisms. For complete details on the use and execution of this protocol, please refer to Geisterfer et al. (2020).
    Description: This work was made possible by an Institutional Development Award (IDeA) from the National Institute of General Medical Sciences of the National Institutes of Health under grant no. 2P20GM103432. It was also supported by additional funding provided by the NIGMS under grant no. R01GM113028, the NSF Faculty CAREER Program under award no. BBBE 1254608, Whitman Center fellowships at the Marine Biological Laboratory, and the Biomedical Scholars program of the Pew Charitable Trusts. We thank Drs. Aaron Groen and Tim Mitchison for their intellectual contributions and involvement in some of the pioneering experiments that set the foundation for this approach.
    Keywords: Biophysics ; Cell Biology ; Cell isolation ; Microscopy ; Model Organisms
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  • 32
    Publication Date: 2022-11-18
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tian, Y., Liu, X., Li, J., Deng, Y., DeGiorgis, J. A., Zhou, S., Caratenuto, A., Minus, M. L., Wan, Y., Xiao, G., & Zheng, Y. Farm-waste-derived recyclable photothermal evaporator. Cell Reports Physical Science, 2(9), (2021): 100549, https://doi.org/10.1016./j.xcrp.2021.100549
    Description: Interfacial solar steam generation is emerging as a promising technique for efficient desalination. Although increasing efforts have been made, challenges exist for achieving a balance among a plethora of performance indicators—for example, rapid evaporation, durability, low-cost deployment, and salt rejection. Here, we demonstrate that carbonized manure can convert 98% of sunlight into heat, and the strong capillarity of porous carbon fibers networks pumps sufficient water to evaporation interfaces. Salt diffusion within microchannels enables quick salt drainage to the bulk seawater to prevent salt accumulation. With these advantages, this biomass-derived evaporator is demonstrated to feature a high evaporation rate of 2.81 kg m−2 h−1 under 1 sun with broad robustness to acidity and alkalinity. These advantages, together with facial deployment, offer an approach for converting farm waste to energy with high efficiency and easy implementation, which is particularly well suited for developing regions.
    Description: This project is supported by the National Science Foundation through grant no. CBET-1941743. This project is based upon work supported in part by the National Science Foundation under EPSCoR Cooperative Agreement no. OIA-1655221.
    Keywords: Biomass ; Recyclable ; Manure ; Farm waste ; Photothermal evaporation ; Desalination
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  • 33
    facet.materialart.
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    ELSEVIER SCIENCE BV
    In:  EPIC3Science of The Total Environment, ELSEVIER SCIENCE BV, pp. 154886-154886, ISSN: 0048-9697
    Publication Date: 2022-11-28
    Description: Some of the highest microplastic concentrations in marine environments have been reported from the Fram Strait in the Arctic. This region supports a diverse ecosystem dependent on high concentrations of zooplankton at the base of the food web. Zooplankton samples were collected during research cruises using Bongo and MOCNESS nets in the boreal summers of 2018 and 2019. Using FTIR scanning spectroscopy in combination with an automated polymer identification approach, we show that all five species of Arctic zooplankton investigated had ingested microplastics. Amphipod species, found in surface waters or closely associated with sea ice, had ingested significantly more microplastic per individual (Themisto libellula: 1.8, Themisto abyssorrum: 1, Apherusa glacialis: 1) than copepod species (Calanus hyperboreus: 0.21, Calanus glacialis/finmarchicus: 0.01). The majority of microplastics ingested were below 50 μm in size, all were fragments and several different polymer types were present. We quantified microplastics in water samples collected at six of the same stations as the Calanus using an underway sampling system (inlet at 6.5 m water depth). Fragments of several polymer types and anthropogenic cellulosic fibres were present, with an average concentration of 7 microplastic particles (MP) L−1 (0–18.5 MP L−1). In comparison to the water samples, those microplastics found ingested by zooplankton were significantly smaller, highlighting that the smaller-sized microplastics were being selected for by the zooplankton. High levels of microplastic ingestion in zooplankton have been associated with negative effects on growth, development, and fecundity. As Arctic zooplankton only have a short window of biological productivity, any negative effect could have broad consequences. As global plastic consumption continues to increase and climate change continues to reduce sea ice cover, releasing ice-bound microplastics and leaving ice free areas open to exploitation, the Arctic could be exposed to further plastic pollution which could place additional strain on this fragile ecosystem.
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  • 34
    Publication Date: 2022-10-21
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Colson, B. C., & Michel, A. P. M. Flow-through quantification of microplastics using impedance spectroscopy. ACS Sensors, 6(1), (2021): 238–244, doi:10.1021/acssensors.0c02223.
    Description: Understanding the sources, impacts, and fate of microplastics in the environment is critical for assessing the potential risks of these anthropogenic particles. However, our ability to quantify and identify microplastics in aquatic ecosystems is limited by the lack of rapid techniques that do not require visual sorting or preprocessing. Here, we demonstrate the use of impedance spectroscopy for high-throughput flow-through microplastic quantification, with the goal of rapid measurement of microplastic concentration and size. Impedance spectroscopy characterizes the electrical properties of individual particles directly in the flow of water, allowing for simultaneous sizing and material identification. To demonstrate the technique, spike and recovery experiments were conducted in tap water with 212–1000 μm polyethylene beads in six size ranges and a variety of similarly sized biological materials. Microplastics were reliably detected, sized, and differentiated from biological materials via their electrical properties at an average flow rate of 103 ± 8 mL/min. The recovery rate was ≥90% for microplastics in the 300–1000 μm size range, and the false positive rate for the misidentification of the biological material as plastic was 1%. Impedance spectroscopy allowed for the identification of microplastics directly in water without visual sorting or filtration, demonstrating its use for flow-through sensing.
    Description: The authors thank the Richard Saltonstall Charitable Foundation and the National Academies Keck Futures Initiative (NAKFI DBS13) for their funding support.
    Keywords: Microplastics ; Plastics ; Impedance spectroscopy ; Dielectric properties ; Instrumentation ; Particle detection ; Flow-through ; Environmental sensing
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  • 35
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 1-7 
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology , Physics
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  • 36
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 21-26 
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology , Physics
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 36-39 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 91-94 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 87-90 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 117-122 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 112-116 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 152-159 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 170-180 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 181-186 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 219-227 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 275-280 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 288-298 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 268-274 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 298-305 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 308-314 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 318-326 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 314-317 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 305-308 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 327-330 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 331-338 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 346-355 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 338-340 
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    The @journal of physical chemistry 〈Washington, DC〉 74 (1970), S. 356-362 
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