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  • Nature Publishing Group
  • 2015-2019  (4)
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  • 2016  (4)
  • 1
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    Nature Publishing Group
    In:  Nature Methods, 13 (2). pp. 107-108.
    Publikationsdatum: 2020-06-24
    Beschreibung: To the Editor: We congratulate Halsey et al. for their important discussion of the random nature of P values in an earlier issue of this journal1. P values from identical experiments can differ greatly in a way that is surprising to many2, 3, 4, 5, 6. The failure to appreciate this…
    Materialart: Article , PeerReviewed
    Format: text
    Format: text
    Format: other
    Standort Signatur Erwartet Verfügbarkeit
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  • 2
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    Nature Publishing Group
    In:  Nature Reviews Genetics, 17 (2). pp. 81-92.
    Publikationsdatum: 2020-06-23
    Beschreibung: High-throughput techniques based on restriction site-associated DNA sequencing (RADseq) are enabling the low-cost discovery and genotyping of thousands of genetic markers for any species, including non-model organisms, which is revolutionizing ecological, evolutionary and conservation genetics. Technical differences among these methods lead to important considerations for all steps of genomics studies, from the specific scientific questions that can be addressed, and the costs of library preparation and sequencing, to the types of bias and error inherent in the resulting data. In this Review, we provide a comprehensive discussion of RADseq methods to aid researchers in choosing among the many different approaches and avoiding erroneous scientific conclusions from RADseq data, a problem that has plagued other genetic marker types in the past.
    Materialart: Article , PeerReviewed
    Format: text
    Standort Signatur Erwartet Verfügbarkeit
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  • 3
    Publikationsdatum: 2023-12-21
    Beschreibung: Remarkable technological advances have revealed ever more properties and behaviours of individual microorganisms, but the novel data generated by these techniques have not yet been fully exploited. In this Opinion article, we explain how individual-based models (IBMs) can be constructed based on the findings of such techniques and how they help to explore competitive and cooperative microbial interactions. Furthermore, we describe how IBMs have provided insights into self-organized spatial patterns from biofilms to the oceans of the world, phage–CRISPR dynamics and other emergent phenomena. Finally, we discuss how combining individual-based observations with IBMs can advance our understanding at both the individual and population levels, leading to the new approach of microbial individual-based ecology (μIBE).
    Materialart: Article , PeerReviewed
    Format: text
    Standort Signatur Erwartet Verfügbarkeit
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  • 4
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    Nature Publishing Group
    Publikationsdatum: 2024-04-12
    Beschreibung: Bacteria use quorum sensing to orchestrate gene expression programmes that underlie collective behaviours. Quorum sensing relies on the production, release, detection and group-level response to extracellular signalling molecules, which are called autoinducers. Recent work has discovered new autoinducers in Gram-negative bacteria, shown how these molecules are recognized by cognate receptors, revealed new regulatory components that are embedded in canonical signalling circuits and identified novel regulatory network designs. In this Review we examine how, together, these features of quorum sensing signal–response systems combine to control collective behaviours in Gram-negative bacteria and we discuss the implications for host–microbial associations and antibacterial therapy.
    Materialart: Article , PeerReviewed
    Format: text
    Standort Signatur Erwartet Verfügbarkeit
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